AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0743720


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0743720 MtrunA17_Chr5g0445771 84.910 444 53 5 1 438 69 504 0.0 690
Msa0743720 MtrunA17_Chr5g0445881 52.009 423 136 6 4 405 57 433 5.27e-101 309
Msa0743720 MtrunA17_Chr5g0446181 49.436 443 76 15 1 438 72 371 1.23e-87 271
Msa0743720 MtrunA17_Chr5g0445861 41.799 378 121 7 1 309 77 424 1.92e-57 194
Msa0743720 MtrunA17_Chr5g0445811 40.683 322 87 6 4 308 41 275 4.90e-52 176
Msa0743720 MtrunA17_Chr5g0445961 39.683 315 102 3 7 233 87 401 1.21e-45 166
Msa0743720 MtrunA17_Chr5g0445871 47.642 212 69 4 194 405 1 170 6.69e-45 155
Msa0743720 MtrunA17_Chr5g0445831 40.404 297 103 6 49 317 166 416 2.92e-37 140
Msa0743720 MtrunA17_Chr5g0445821 57.798 109 36 3 334 438 5 107 5.15e-20 85.1
Msa0743720 MtrunA17_Chr5g0445801 56.944 72 31 0 334 405 5 76 6.95e-20 84.7
Msa0743720 MtrunA17_Chr1g0185261 35.652 230 84 5 1 221 1 175 7.05e-17 79.3
Msa0743720 MtrunA17_Chr5g0446231 47.475 99 48 2 2 96 36 134 2.54e-14 75.1
Msa0743720 MtrunA17_Chr5g0446191 47.475 99 48 2 2 96 51 149 3.25e-14 74.7
Msa0743720 MtrunA17_Chr5g0446171 34.706 170 63 6 4 173 59 180 8.64e-13 67.8
Msa0743720 MtrunA17_Chr5g0413371 46.316 95 48 2 5 98 37 129 1.96e-11 66.2
Msa0743720 MtrunA17_Chr5g0434151 50.000 64 27 1 326 389 18 76 3.46e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 110 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAACTATTATCTAAGGTAAA+TGG 0.159605 5_1:-64238538 Msa0743720:three_prime_UTR
TAATGATCATCTTGATTTAT+TGG 0.203669 5_1:+64240386 None:intergenic
GATGGACTTAAGGTTAAAAT+TGG 0.205009 5_1:-64240770 Msa0743720:CDS
ATTGTTAGGCTTTGTGGAAT+TGG 0.283522 5_1:+64241382 None:intergenic
TAAGGTTAAAATTGGAGAAT+TGG 0.289099 5_1:-64240762 Msa0743720:CDS
TGAATTAGAGAGTAAGGTTT+TGG 0.290330 5_1:-64240840 Msa0743720:CDS
AAATGCTTTGGATGGACTTA+AGG 0.315634 5_1:-64240780 Msa0743720:CDS
TGGTGACCCAGGTTCAGTTT+TGG 0.318302 5_1:+64241412 None:intergenic
TCGGGCTTAGATGCCTCTAT+TGG 0.322418 5_1:-64240572 Msa0743720:CDS
TGATAGTGTTGAAGCTGTTT+TGG 0.323247 5_1:-64241294 Msa0743720:five_prime_UTR
CATTTAAAGAAAGCTAGTTT+TGG 0.330754 5_1:-64238786 Msa0743720:CDS
GGAGACAGTAAAGAAGAATT+TGG 0.339017 5_1:-64240738 Msa0743720:CDS
TTCAAGATTGTTAGGCTTTG+TGG 0.342117 5_1:+64241376 None:intergenic
TTGGGTTGCATGTTGATGAT+TGG 0.348752 5_1:+64241431 None:intergenic
AGGAAAACGGTTGAGATTAC+AGG 0.365163 5_1:-64239510 Msa0743720:CDS
AGTAGAAGTGGAGGTGGAAG+TGG 0.367803 5_1:+64238641 None:intergenic
TTAGTGTGAAAACCTGAAAA+TGG 0.368433 5_1:+64241488 None:intergenic
GTCTATTCATGATCTTGTTA+TGG 0.368869 5_1:-64241348 Msa0743720:five_prime_UTR
TGGGTTGCATGTTGATGATT+GGG 0.369404 5_1:+64241432 None:intergenic
AGAAAAGAAGAACAATGAAT+TGG 0.369477 5_1:-64241032 Msa0743720:CDS
GTTGCAACAAAGCTTTGAAA+TGG 0.369757 5_1:-64241236 Msa0743720:exon
CAGGATTGAACTATTATCTA+AGG 0.378675 5_1:-64238545 Msa0743720:three_prime_UTR
GAGAGGAAATTTGTGAGAAA+GGG 0.390161 5_1:-64241138 Msa0743720:CDS
GAGGAATGAAAGCAGCAAAT+TGG 0.390389 5_1:-64240699 Msa0743720:CDS
AACTATTATCTAAGGTAAAT+GGG 0.392903 5_1:-64238537 Msa0743720:three_prime_UTR
CAAGATGATCATTACACTCT+TGG 0.393009 5_1:-64240377 Msa0743720:CDS
AATTGTTGAATTAGAGGATC+AGG 0.394146 5_1:-64240939 Msa0743720:CDS
CTCATTGTTGCCACCAATAG+AGG 0.396366 5_1:+64240559 None:intergenic
TCGTCCTCGTTATCTTCAAA+AGG 0.398727 5_1:+64240464 None:intergenic
GGAGGAAGATGACATTGAAT+TGG 0.407668 5_1:-64240885 Msa0743720:CDS
TCCTCGCTCTCTTCAGAACT+TGG 0.410782 5_1:+64240509 None:intergenic
AGAGAGGAAATTTGTGAGAA+AGG 0.411748 5_1:-64241139 Msa0743720:CDS
GACTGGTGAATTAGAGAGTA+AGG 0.418061 5_1:-64240846 Msa0743720:CDS
AGCCGGTGGAAGAGTGAAAC+TGG 0.434903 5_1:-64238880 Msa0743720:CDS
CGCTAGAAAGCCCAGGAAAA+CGG 0.451250 5_1:-64239523 Msa0743720:CDS
TCATCTTGATTTATTGGTAA+AGG 0.453360 5_1:+64240392 None:intergenic
GACTTGTCTTCAAGATTGTT+AGG 0.457224 5_1:+64241368 None:intergenic
GCCAAGTTCATCAGCGGCAC+TGG 0.467989 5_1:-64238742 Msa0743720:CDS
GGTTAAAATTGGAGAATTGG+AGG 0.470375 5_1:-64240759 Msa0743720:CDS
TTCCAGTTTCACTCTTCCAC+CGG 0.474751 5_1:+64238878 None:intergenic
ATGCAACCCAAAACTGAACC+TGG 0.476085 5_1:-64241419 Msa0743720:five_prime_UTR
GGTTGAAATTAAGAATTTGA+AGG 0.477261 5_1:-64241008 Msa0743720:CDS
GGCTTTGTGGAATTGGAACC+TGG 0.477680 5_1:+64241389 None:intergenic
GATGCTCAAGGTTCATCATC+AGG 0.480745 5_1:-64240314 Msa0743720:intron
GCCAGTGCCGCTGATGAACT+TGG 0.489599 5_1:+64238741 None:intergenic
TCTTCAGAACTTGGAACCAC+TGG 0.490593 5_1:+64240518 None:intergenic
TTTGACTGTGTCAACTGCAT+TGG 0.494201 5_1:+64238695 None:intergenic
GGCTTAGATGCCTCTATTGG+TGG 0.497178 5_1:-64240569 Msa0743720:CDS
AAAGAAGAACAATGAATTGG+AGG 0.497575 5_1:-64241029 Msa0743720:CDS
GCTTAGAGAGGAGTTTCACT+TGG 0.499506 5_1:-64241203 Msa0743720:CDS
TTCACTTGGAGAGACTTTCA+AGG 0.504313 5_1:-64241189 Msa0743720:CDS
AGAAGTGGAGGTGGAAGTGG+AGG 0.504345 5_1:+64238644 None:intergenic
TCCACTTCTACTTCCTCCGA+TGG 0.506545 5_1:-64238630 Msa0743720:CDS
TTTCTGCAGGTGAAGAGTGT+TGG 0.516504 5_1:-64239554 Msa0743720:intron
CGTCCTCGTTATCTTCAAAA+GGG 0.521407 5_1:+64240465 None:intergenic
ACTACGTGGAACTTGTCAAT+GGG 0.522509 5_1:-64241324 Msa0743720:five_prime_UTR
TACTACGTGGAACTTGTCAA+TGG 0.523079 5_1:-64241325 Msa0743720:five_prime_UTR
GTCACCGAGCAAAGGGATCA+AGG 0.524366 5_1:-64240336 Msa0743720:CDS
GAGGAAGATGACATTGAATT+GGG 0.529053 5_1:-64240884 Msa0743720:CDS
CATGTCTCGATAATCTTACA+AGG 0.529060 5_1:-64238605 Msa0743720:CDS
GCATCCTTGATCCCTTTGCT+CGG 0.529843 5_1:+64240332 None:intergenic
GAAGAGCGTGTTCCTGTGGT+TGG 0.530070 5_1:-64240488 Msa0743720:CDS
GTACTCAGTCACCGAGCAAA+GGG 0.531835 5_1:-64240343 Msa0743720:CDS
TTGATGATTGGGTGGAAAGG+TGG 0.536330 5_1:+64241443 None:intergenic
GGAGGAAGTAGAAGTGGAGG+TGG 0.539101 5_1:+64238635 None:intergenic
TCTATTGGTGGCAACAATGA+GGG 0.540187 5_1:-64240557 Msa0743720:CDS
CTCTATTGGTGGCAACAATG+AGG 0.543509 5_1:-64240558 Msa0743720:CDS
TTGGAACCTGGTGGTGACCC+AGG 0.547983 5_1:+64241401 None:intergenic
GGAGAGATTAAAGCTTAGAG+AGG 0.551503 5_1:-64241215 Msa0743720:CDS
TCACTTGGAGAGACTTTCAA+GGG 0.554056 5_1:-64241188 Msa0743720:CDS
TTTGGAGTTGACGAAGTCAA+AGG 0.554284 5_1:-64240822 Msa0743720:CDS
GATAACGAGGACGAGAATGC+TGG 0.561580 5_1:-64240455 Msa0743720:CDS
GGAGCCTTCTGCTGATCCAG+TGG 0.561757 5_1:-64240534 Msa0743720:CDS
AAGATGTAGGCGGACAGTGC+AGG 0.564461 5_1:-64238564 Msa0743720:exon
CAAAGCCTCAAGTAATGTCT+CGG 0.571102 5_1:+64240658 None:intergenic
GTTGAGATTACAGGGTCTTG+TGG 0.573376 5_1:-64239501 Msa0743720:CDS
TGACGAAGTCAAAGGAAAAG+TGG 0.576702 5_1:-64240814 Msa0743720:CDS
ACTGAACCTGGGTCACCACC+AGG 0.584855 5_1:-64241407 Msa0743720:five_prime_UTR
GATGATCAATCTATGTCTCA+AGG 0.584996 5_1:-64238813 Msa0743720:CDS
AGTACTCAGTCACCGAGCAA+AGG 0.588934 5_1:-64240344 Msa0743720:CDS
TCTTCAAAAGGGCCAACCAC+AGG 0.593551 5_1:+64240476 None:intergenic
ACCATCGGAGGAAGTAGAAG+TGG 0.600712 5_1:+64238629 None:intergenic
GAGATTACAGGGTCTTGTGG+AGG 0.601325 5_1:-64239498 Msa0743720:intron
TGGCAACGATGAGTGAGTTG+AGG 0.602280 5_1:-64240718 Msa0743720:CDS
CGAGGAAGAGCGTGTTCCTG+TGG 0.602659 5_1:-64240492 Msa0743720:CDS
GGAACCACTGGATCAGCAGA+AGG 0.603309 5_1:+64240530 None:intergenic
CTATTGGTGGCAACAATGAG+GGG 0.607900 5_1:-64240556 Msa0743720:CDS
CATTACTTGAGGCTTTGAAG+AGG 0.609257 5_1:-64240652 Msa0743720:CDS
TCCAAGTTCTGAAGAGAGCG+AGG 0.609667 5_1:-64240510 Msa0743720:CDS
CATAAATGACATTGTTGACG+AGG 0.611921 5_1:-64240420 Msa0743720:CDS
TGGTATACGCTAGAAAGCCC+AGG 0.612521 5_1:-64239530 Msa0743720:CDS
TGAAAGAGTAACAACGTTGG+AGG 0.614401 5_1:-64240612 Msa0743720:CDS
TGAAAGCAGCAAATTGGCAG+AGG 0.619230 5_1:-64240693 Msa0743720:CDS
ATGTTGATGATTGGGTGGAA+AGG 0.620886 5_1:+64241440 None:intergenic
GTTGCATGTTGATGATTGGG+TGG 0.621163 5_1:+64241435 None:intergenic
TGCAACCCAAAACTGAACCT+GGG 0.623349 5_1:-64241418 Msa0743720:five_prime_UTR
GGAAAACGGTTGAGATTACA+GGG 0.627772 5_1:-64239509 Msa0743720:CDS
AAAGGGATCAAGGATGCTCA+AGG 0.628139 5_1:-64240326 Msa0743720:CDS
CGAAGCCGAGACATTACTTG+AGG 0.631250 5_1:-64240663 Msa0743720:CDS
TGCAGGTGAAGAGTGTTGGA+TGG 0.633165 5_1:-64239550 Msa0743720:intron
GTCTGAATTTAAGAAAAGAG+AGG 0.635967 5_1:-64241155 Msa0743720:CDS
ATTATCGAGACATGAACCAT+CGG 0.637556 5_1:+64238614 None:intergenic
AAGAGGGATATGAGACTCAG+AGG 0.640463 5_1:-64241269 Msa0743720:five_prime_UTR
ATCGGAGGAAGTAGAAGTGG+AGG 0.645940 5_1:+64238632 None:intergenic
TGAAGAGCCAAGTTCATCAG+CGG 0.677802 5_1:-64238748 Msa0743720:CDS
TATTGGTGGCAACAATGAGG+GGG 0.686512 5_1:-64240555 Msa0743720:CDS
ATCGAGACATGAACCATCGG+AGG 0.699092 5_1:+64238617 None:intergenic
GCGTGAAAGAGTAACAACGT+TGG 0.738449 5_1:-64240615 Msa0743720:CDS
GATCTTGTTATGGTACTACG+TGG 0.742209 5_1:-64241338 Msa0743720:five_prime_UTR
TTTGTGGAATTGGAACCTGG+TGG 0.802029 5_1:+64241392 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAATAATTCATAGTTATTAA+GGG - chr5_1:64240591-64240610 Msa0743720:CDS 15.0%
!! AATAATTCATAGTTATTAAG+GGG - chr5_1:64240592-64240611 Msa0743720:CDS 15.0%
!!! AAATATAGTGAAAATGTTTT+TGG - chr5_1:64240672-64240691 Msa0743720:CDS 15.0%
!! AAACAAAAACTTGAAAAATA+AGG + chr5_1:64241072-64241091 None:intergenic 15.0%
!!! GAAACTTTAGAAGAAAAAAT+GGG + chr5_1:64238571-64238590 None:intergenic 20.0%
!! AACAAAAATTGTTGAATTAG+AGG - chr5_1:64239088-64239107 Msa0743720:intron 20.0%
!! TAAAGAAGATCAAGAAAAAA+TGG - chr5_1:64239126-64239145 Msa0743720:intron 20.0%
!! AAAGAAGATCAAGAAAAAAT+GGG - chr5_1:64239127-64239146 Msa0743720:intron 20.0%
!! TAATGATCATCTTGATTTAT+TGG + chr5_1:64239650-64239669 None:intergenic 20.0%
!! AAATTATATAATATCCAGAG+AGG + chr5_1:64239988-64240007 None:intergenic 20.0%
!! TTCAAAGTACAAACAATAAA+TGG + chr5_1:64240310-64240329 None:intergenic 20.0%
!! GGAATAATTCATAGTTATTA+AGG - chr5_1:64240590-64240609 Msa0743720:CDS 20.0%
!!! AAATGTATTTTGTTTTTCCT+AGG - chr5_1:64240890-64240909 Msa0743720:CDS 20.0%
!! AAAACTTGAAAAATAAGGTA+TGG + chr5_1:64241067-64241086 None:intergenic 20.0%
!!! AACTATTATCTAAGGTAAAT+GGG - chr5_1:64241496-64241515 Msa0743720:five_prime_UTR 20.0%
!!! AAAACCTGAAAATGGATTTT+TGG + chr5_1:64238540-64238559 None:intergenic 25.0%
!! GGAAACTTTAGAAGAAAAAA+TGG + chr5_1:64238572-64238591 None:intergenic 25.0%
! AGAAAAGAAGAACAATGAAT+TGG - chr5_1:64239001-64239020 Msa0743720:intron 25.0%
! GGTTGAAATTAAGAATTTGA+AGG - chr5_1:64239025-64239044 Msa0743720:intron 25.0%
! TAAGGTTAAAATTGGAGAAT+TGG - chr5_1:64239271-64239290 Msa0743720:intron 25.0%
! TCATCTTGATTTATTGGTAA+AGG + chr5_1:64239644-64239663 None:intergenic 25.0%
! ATGTGTGATTGAATAAATGT+TGG - chr5_1:64239810-64239829 Msa0743720:intron 25.0%
! TGTGTGATTGAATAAATGTT+GGG - chr5_1:64239811-64239830 Msa0743720:intron 25.0%
!!! AAACTGGATAAACTGTTTTT+TGG - chr5_1:64240717-64240736 Msa0743720:CDS 25.0%
! AATGAAAAACACACAAAATC+AGG - chr5_1:64240866-64240885 Msa0743720:CDS 25.0%
! TATCAGATAATATATACAGC+AGG + chr5_1:64240935-64240954 None:intergenic 25.0%
!! TGCTTAAACATATCTCTTTT+TGG - chr5_1:64241127-64241146 Msa0743720:CDS 25.0%
!!! CATTTAAAGAAAGCTAGTTT+TGG - chr5_1:64241247-64241266 Msa0743720:five_prime_UTR 25.0%
! TGCAAAAAAGAAAAAGATGT+AGG - chr5_1:64241456-64241475 Msa0743720:five_prime_UTR 25.0%
! AAAAAAGAAAAAGATGTAGG+CGG - chr5_1:64241459-64241478 Msa0743720:five_prime_UTR 25.0%
!! GAACTATTATCTAAGGTAAA+TGG - chr5_1:64241495-64241514 Msa0743720:five_prime_UTR 25.0%
!!! GATTTTTGGAATGAAGATGA+AGG + chr5_1:64238526-64238545 None:intergenic 30.0%
! CATTCCAAAAATCCATTTTC+AGG - chr5_1:64238533-64238552 Msa0743720:three_prime_UTR 30.0%
TTAGTGTGAAAACCTGAAAA+TGG + chr5_1:64238548-64238567 None:intergenic 30.0%
GTCTATTCATGATCTTGTTA+TGG - chr5_1:64238685-64238704 Msa0743720:CDS 30.0%
GTCTGAATTTAAGAAAAGAG+AGG - chr5_1:64238878-64238897 Msa0743720:CDS 30.0%
!! AGCTCTTTTGAAAGAAGTTA+AGG - chr5_1:64238941-64238960 Msa0743720:intron 30.0%
AAAGAAGAACAATGAATTGG+AGG - chr5_1:64239004-64239023 Msa0743720:intron 30.0%
AATTGTTGAATTAGAGGATC+AGG - chr5_1:64239094-64239113 Msa0743720:intron 30.0%
GGTGAATTAAGAAAAATGAC+TGG - chr5_1:64239170-64239189 Msa0743720:intron 30.0%
! TGAATTAGAGAGTAAGGTTT+TGG - chr5_1:64239193-64239212 Msa0743720:intron 30.0%
GCTAGATGATAAAAATGCTT+TGG - chr5_1:64239241-64239260 Msa0743720:intron 30.0%
! GATGATAAAAATGCTTTGGA+TGG - chr5_1:64239245-64239264 Msa0743720:intron 30.0%
! GATGGACTTAAGGTTAAAAT+TGG - chr5_1:64239263-64239282 Msa0743720:intron 30.0%
TAGATAAACTCGATTAACAC+CGG - chr5_1:64240016-64240035 Msa0743720:intron 30.0%
GACAAATTACCATAATATCC+CGG + chr5_1:64240038-64240057 None:intergenic 30.0%
! AATGCTACTTACATTTCCTT+AGG + chr5_1:64240182-64240201 None:intergenic 30.0%
ATATACTCCAACACTTGATA+TGG - chr5_1:64240384-64240403 Msa0743720:CDS 30.0%
TATACTCCAACACTTGATAT+GGG - chr5_1:64240385-64240404 Msa0743720:CDS 30.0%
AATTATCCCATATCAAGTGT+TGG + chr5_1:64240394-64240413 None:intergenic 30.0%
!!! TTTTTTAGAGCATTTTCTGC+AGG - chr5_1:64240466-64240485 Msa0743720:CDS 30.0%
AATTCATAGTTATTAAGGGG+AGG - chr5_1:64240595-64240614 Msa0743720:CDS 30.0%
!!! TGTTTTTGGATTATCTGTTG+AGG - chr5_1:64240686-64240705 Msa0743720:CDS 30.0%
TCAATTACTTGAAGATCCAA+TGG - chr5_1:64240981-64241000 Msa0743720:CDS 30.0%
CAGGATTGAACTATTATCTA+AGG - chr5_1:64241488-64241507 Msa0743720:five_prime_UTR 30.0%
! ATTGTTAGGCTTTGTGGAAT+TGG + chr5_1:64238654-64238673 None:intergenic 35.0%
TTCAAGATTGTTAGGCTTTG+TGG + chr5_1:64238660-64238679 None:intergenic 35.0%
GACTTGTCTTCAAGATTGTT+AGG + chr5_1:64238668-64238687 None:intergenic 35.0%
!! TGATAGTGTTGAAGCTGTTT+TGG - chr5_1:64238739-64238758 Msa0743720:CDS 35.0%
!! GTTGCAACAAAGCTTTGAAA+TGG - chr5_1:64238797-64238816 Msa0743720:CDS 35.0%
AGAGAGGAAATTTGTGAGAA+AGG - chr5_1:64238894-64238913 Msa0743720:intron 35.0%
GAGAGGAAATTTGTGAGAAA+GGG - chr5_1:64238895-64238914 Msa0743720:intron 35.0%
GAAGATCAAGAAAAAATGGG+AGG - chr5_1:64239130-64239149 Msa0743720:intron 35.0%
GAGGAAGATGACATTGAATT+GGG - chr5_1:64239149-64239168 Msa0743720:intron 35.0%
! AAATGCTTTGGATGGACTTA+AGG - chr5_1:64239253-64239272 Msa0743720:intron 35.0%
GGTTAAAATTGGAGAATTGG+AGG - chr5_1:64239274-64239293 Msa0743720:intron 35.0%
GGAGACAGTAAAGAAGAATT+TGG - chr5_1:64239295-64239314 Msa0743720:intron 35.0%
! GGAAGATCTCATTCTTTTGT+CGG - chr5_1:64239442-64239461 Msa0743720:intron 35.0%
! GAAGATCTCATTCTTTTGTC+GGG - chr5_1:64239443-64239462 Msa0743720:intron 35.0%
CATAAATGACATTGTTGACG+AGG - chr5_1:64239613-64239632 Msa0743720:intron 35.0%
CAAGATGATCATTACACTCT+TGG - chr5_1:64239656-64239675 Msa0743720:intron 35.0%
AAGGTTCATCATCAGGTATA+TGG - chr5_1:64239726-64239745 Msa0743720:intron 35.0%
CAATCACTAGTTGAACATAC+TGG + chr5_1:64239838-64239857 None:intergenic 35.0%
! AAAGTGTGATGACTAGCTAA+TGG + chr5_1:64239911-64239930 None:intergenic 35.0%
AGATAAACTCGATTAACACC+GGG - chr5_1:64240017-64240036 Msa0743720:intron 35.0%
! TTATGGTAATTTGTCCTCTC+TGG - chr5_1:64240043-64240062 Msa0743720:intron 35.0%
AATAAAGATGAACCTTGGAG+AGG + chr5_1:64240106-64240125 None:intergenic 35.0%
CATGGAATAAAGATGAACCT+TGG + chr5_1:64240111-64240130 None:intergenic 35.0%
!! GAAATGTAAGTAGCATTGAC+AGG - chr5_1:64240185-64240204 Msa0743720:intron 35.0%
TTGGAGTATATCTCTACAAG+AGG + chr5_1:64240375-64240394 None:intergenic 35.0%
!! TGCTCTAAAAAACTGTCTGA+AGG + chr5_1:64240458-64240477 None:intergenic 35.0%
GGAGGTTTATTAGAGAATAG+AGG - chr5_1:64240613-64240632 Msa0743720:CDS 35.0%
TTGGATTATCTGTTGAGGTT+TGG - chr5_1:64240691-64240710 Msa0743720:CDS 35.0%
TCGAAAGAAAACTTCCTCAA+GGG + chr5_1:64240837-64240856 None:intergenic 35.0%
TTCGAAAGAAAACTTCCTCA+AGG + chr5_1:64240838-64240857 None:intergenic 35.0%
GATGATCAATCTATGTCTCA+AGG - chr5_1:64241220-64241239 Msa0743720:CDS 35.0%
ATTATCGAGACATGAACCAT+CGG + chr5_1:64241422-64241441 None:intergenic 35.0%
CATGTCTCGATAATCTTACA+AGG - chr5_1:64241428-64241447 Msa0743720:five_prime_UTR 35.0%
!! ATGTTGATGATTGGGTGGAA+AGG + chr5_1:64238596-64238615 None:intergenic 40.0%
!! TGGGTTGCATGTTGATGATT+GGG + chr5_1:64238604-64238623 None:intergenic 40.0%
!! TTGGGTTGCATGTTGATGAT+TGG + chr5_1:64238605-64238624 None:intergenic 40.0%
! GATCTTGTTATGGTACTACG+TGG - chr5_1:64238695-64238714 Msa0743720:CDS 40.0%
TACTACGTGGAACTTGTCAA+TGG - chr5_1:64238708-64238727 Msa0743720:CDS 40.0%
ACTACGTGGAACTTGTCAAT+GGG - chr5_1:64238709-64238728 Msa0743720:CDS 40.0%
!!! TTGAAGCTGTTTTGGAGAAG+AGG - chr5_1:64238747-64238766 Msa0743720:CDS 40.0%
!!! TGAAGCTGTTTTGGAGAAGA+GGG - chr5_1:64238748-64238767 Msa0743720:CDS 40.0%
GGAGAGATTAAAGCTTAGAG+AGG - chr5_1:64238818-64238837 Msa0743720:CDS 40.0%
TTCACTTGGAGAGACTTTCA+AGG - chr5_1:64238844-64238863 Msa0743720:CDS 40.0%
TCACTTGGAGAGACTTTCAA+GGG - chr5_1:64238845-64238864 Msa0743720:CDS 40.0%
GGAGGAAGATGACATTGAAT+TGG - chr5_1:64239148-64239167 Msa0743720:intron 40.0%
GACTGGTGAATTAGAGAGTA+AGG - chr5_1:64239187-64239206 Msa0743720:intron 40.0%
! TTTGGAGTTGACGAAGTCAA+AGG - chr5_1:64239211-64239230 Msa0743720:intron 40.0%
TGACGAAGTCAAAGGAAAAG+TGG - chr5_1:64239219-64239238 Msa0743720:intron 40.0%
GAGGAATGAAAGCAGCAAAT+TGG - chr5_1:64239334-64239353 Msa0743720:intron 40.0%
CAAAGCCTCAAGTAATGTCT+CGG + chr5_1:64239378-64239397 None:intergenic 40.0%
!! CATTACTTGAGGCTTTGAAG+AGG - chr5_1:64239381-64239400 Msa0743720:intron 40.0%
TGAAAGAGTAACAACGTTGG+AGG - chr5_1:64239421-64239440 Msa0743720:intron 40.0%
! TCTATTGGTGGCAACAATGA+GGG - chr5_1:64239476-64239495 Msa0743720:intron 40.0%
CGTCCTCGTTATCTTCAAAA+GGG + chr5_1:64239571-64239590 None:intergenic 40.0%
TCGTCCTCGTTATCTTCAAA+AGG + chr5_1:64239572-64239591 None:intergenic 40.0%
GCATATACTCAATTAGCACC+AGG - chr5_1:64239954-64239973 Msa0743720:intron 40.0%
CGATTAACACCGGGATATTA+TGG - chr5_1:64240026-64240045 Msa0743720:intron 40.0%
AATTCAACTTCCATCCAGAG+AGG + chr5_1:64240060-64240079 None:intergenic 40.0%
! AGCTGGATCTGATTTTCCTA+AGG - chr5_1:64240163-64240182 Msa0743720:intron 40.0%
! GTAATCTCAACCGTTTTCCT+GGG + chr5_1:64240523-64240542 None:intergenic 40.0%
! TGTAATCTCAACCGTTTTCC+TGG + chr5_1:64240524-64240543 None:intergenic 40.0%
AGGAAAACGGTTGAGATTAC+AGG - chr5_1:64240523-64240542 Msa0743720:CDS 40.0%
GGAAAACGGTTGAGATTACA+GGG - chr5_1:64240524-64240543 Msa0743720:CDS 40.0%
GTTATTCAGTAGCATGCAGA+AGG - chr5_1:64240561-64240580 Msa0743720:CDS 40.0%
! TGTTGAGGTTTGGTAGAAAC+TGG - chr5_1:64240701-64240720 Msa0743720:CDS 40.0%
CGCTGTAATCATGTTTACCT+AGG + chr5_1:64240910-64240929 None:intergenic 40.0%
TTACTTGAAGATCCAATGGC+TGG - chr5_1:64240985-64241004 Msa0743720:CDS 40.0%
TTCAAGGAAAATCCAGCCAT+TGG + chr5_1:64241000-64241019 None:intergenic 40.0%
! GGATTTTCCTTGAAATGCTG+AGG - chr5_1:64241006-64241025 Msa0743720:CDS 40.0%
! ATATCTCTTTTTGGACCAGC+CGG - chr5_1:64241136-64241155 Msa0743720:CDS 40.0%
TTTGACTGTGTCAACTGCAT+TGG + chr5_1:64241341-64241360 None:intergenic 40.0%
! TTGATGATTGGGTGGAAAGG+TGG + chr5_1:64238593-64238612 None:intergenic 45.0%
!! GTTGCATGTTGATGATTGGG+TGG + chr5_1:64238601-64238620 None:intergenic 45.0%
ATGCAACCCAAAACTGAACC+TGG - chr5_1:64238614-64238633 Msa0743720:CDS 45.0%
TGCAACCCAAAACTGAACCT+GGG - chr5_1:64238615-64238634 Msa0743720:CDS 45.0%
TTTGTGGAATTGGAACCTGG+TGG + chr5_1:64238644-64238663 None:intergenic 45.0%
AAGAGGGATATGAGACTCAG+AGG - chr5_1:64238764-64238783 Msa0743720:CDS 45.0%
GCTTAGAGAGGAGTTTCACT+TGG - chr5_1:64238830-64238849 Msa0743720:CDS 45.0%
TGAAAGCAGCAAATTGGCAG+AGG - chr5_1:64239340-64239359 Msa0743720:intron 45.0%
GCGTGAAAGAGTAACAACGT+TGG - chr5_1:64239418-64239437 Msa0743720:intron 45.0%
CTCATTGTTGCCACCAATAG+AGG + chr5_1:64239477-64239496 None:intergenic 45.0%
! CTCTATTGGTGGCAACAATG+AGG - chr5_1:64239475-64239494 Msa0743720:intron 45.0%
! CTATTGGTGGCAACAATGAG+GGG - chr5_1:64239477-64239496 Msa0743720:intron 45.0%
! TATTGGTGGCAACAATGAGG+GGG - chr5_1:64239478-64239497 Msa0743720:intron 45.0%
TCTTCAGAACTTGGAACCAC+TGG + chr5_1:64239518-64239537 None:intergenic 45.0%
!! TGGCCCTTTTGAAGATAACG+AGG - chr5_1:64239565-64239584 Msa0743720:intron 45.0%
AAAGGGATCAAGGATGCTCA+AGG - chr5_1:64239707-64239726 Msa0743720:intron 45.0%
GATGCTCAAGGTTCATCATC+AGG - chr5_1:64239719-64239738 Msa0743720:intron 45.0%
CTCAATTAGCACCAGGATGT+TGG - chr5_1:64239961-64239980 Msa0743720:intron 45.0%
! GGTAATTTGTCCTCTCTGGA+TGG - chr5_1:64240047-64240066 Msa0743720:intron 45.0%
AAGATGAACCTTGGAGAGGA+AGG + chr5_1:64240102-64240121 None:intergenic 45.0%
!! AGTAGCATTGACAGGAACTG+TGG - chr5_1:64240193-64240212 Msa0743720:intron 45.0%
! TTTCTGCAGGTGAAGAGTGT+TGG - chr5_1:64240479-64240498 Msa0743720:CDS 45.0%
GTTGAGATTACAGGGTCTTG+TGG - chr5_1:64240532-64240551 Msa0743720:CDS 45.0%
GATTTCTTCCTCATCCCTTG+AGG - chr5_1:64240820-64240839 Msa0743720:CDS 45.0%
GAAAACTTCCTCAAGGGATG+AGG + chr5_1:64240831-64240850 None:intergenic 45.0%
CTAGTAGCCTCAGCATTTCA+AGG + chr5_1:64241016-64241035 None:intergenic 45.0%
TTCCAGTTTCACTCTTCCAC+CGG + chr5_1:64241158-64241177 None:intergenic 45.0%
TGAAGAGCCAAGTTCATCAG+CGG - chr5_1:64241285-64241304 Msa0743720:five_prime_UTR 45.0%
! GGTGACCCAGGTTCAGTTTT+GGG + chr5_1:64238623-64238642 None:intergenic 50.0%
! TGGTGACCCAGGTTCAGTTT+TGG + chr5_1:64238624-64238643 None:intergenic 50.0%
! GGCTTTGTGGAATTGGAACC+TGG + chr5_1:64238647-64238666 None:intergenic 50.0%
TGGCAACGATGAGTGAGTTG+AGG - chr5_1:64239315-64239334 Msa0743720:intron 50.0%
CGAAGCCGAGACATTACTTG+AGG - chr5_1:64239370-64239389 Msa0743720:intron 50.0%
TCGGGCTTAGATGCCTCTAT+TGG - chr5_1:64239461-64239480 Msa0743720:intron 50.0%
GGCTTAGATGCCTCTATTGG+TGG - chr5_1:64239464-64239483 Msa0743720:intron 50.0%
!! TCCAAGTTCTGAAGAGAGCG+AGG - chr5_1:64239523-64239542 Msa0743720:CDS 50.0%
TCCTCGCTCTCTTCAGAACT+TGG + chr5_1:64239527-64239546 None:intergenic 50.0%
TCTTCAAAAGGGCCAACCAC+AGG + chr5_1:64239560-64239579 None:intergenic 50.0%
GATAACGAGGACGAGAATGC+TGG - chr5_1:64239578-64239597 Msa0743720:intron 50.0%
AGTACTCAGTCACCGAGCAA+AGG - chr5_1:64239689-64239708 Msa0743720:intron 50.0%
GTACTCAGTCACCGAGCAAA+GGG - chr5_1:64239690-64239709 Msa0743720:intron 50.0%
GCATCCTTGATCCCTTTGCT+CGG + chr5_1:64239704-64239723 None:intergenic 50.0%
TGCTTCTTCCTTCCTCTCCA+AGG - chr5_1:64240091-64240110 Msa0743720:intron 50.0%
! CTTGCTTGGGCTAGGTAACA+TGG + chr5_1:64240129-64240148 None:intergenic 50.0%
! TGAGAGCCAAGAGCTTGCTT+GGG + chr5_1:64240142-64240161 None:intergenic 50.0%
! ATGAGAGCCAAGAGCTTGCT+TGG + chr5_1:64240143-64240162 None:intergenic 50.0%
! AAGCTCTTGGCTCTCATAGC+TGG - chr5_1:64240146-64240165 Msa0743720:intron 50.0%
!! TGCAGGTGAAGAGTGTTGGA+TGG - chr5_1:64240483-64240502 Msa0743720:CDS 50.0%
TGGTATACGCTAGAAAGCCC+AGG - chr5_1:64240503-64240522 Msa0743720:CDS 50.0%
CGCTAGAAAGCCCAGGAAAA+CGG - chr5_1:64240510-64240529 Msa0743720:CDS 50.0%
! GAGATTACAGGGTCTTGTGG+AGG - chr5_1:64240535-64240554 Msa0743720:CDS 50.0%
! GTAGCATGCAGAAGGTGTAG+TGG - chr5_1:64240569-64240588 Msa0743720:CDS 50.0%
AGTAGAAGTGGAGGTGGAAG+TGG + chr5_1:64241395-64241414 None:intergenic 50.0%
ATCGGAGGAAGTAGAAGTGG+AGG + chr5_1:64241404-64241423 None:intergenic 50.0%
TCCACTTCTACTTCCTCCGA+TGG - chr5_1:64241403-64241422 Msa0743720:five_prime_UTR 50.0%
ACCATCGGAGGAAGTAGAAG+TGG + chr5_1:64241407-64241426 None:intergenic 50.0%
ATCGAGACATGAACCATCGG+AGG + chr5_1:64241419-64241438 None:intergenic 50.0%
GGAACCACTGGATCAGCAGA+AGG + chr5_1:64239506-64239525 None:intergenic 55.0%
! GAAGAGCGTGTTCCTGTGGT+TGG - chr5_1:64239545-64239564 Msa0743720:CDS 55.0%
GTCACCGAGCAAAGGGATCA+AGG - chr5_1:64239697-64239716 Msa0743720:intron 55.0%
ACCAGGATGTTGGTCCTCTC+TGG - chr5_1:64239971-64239990 Msa0743720:intron 55.0%
TCCAGAGAGGACCAACATCC+TGG + chr5_1:64239975-64239994 None:intergenic 55.0%
ACCTAGCCCAAGCAAGCTCT+TGG - chr5_1:64240133-64240152 Msa0743720:intron 55.0%
! TCTCTTTTTGGACCAGCCGG+TGG - chr5_1:64241139-64241158 Msa0743720:CDS 55.0%
AGTTTCACTCTTCCACCGGC+TGG + chr5_1:64241154-64241173 None:intergenic 55.0%
AGCCGGTGGAAGAGTGAAAC+TGG - chr5_1:64241153-64241172 Msa0743720:CDS 55.0%
AGAAGTGGAGGTGGAAGTGG+AGG + chr5_1:64241392-64241411 None:intergenic 55.0%
GGAGGAAGTAGAAGTGGAGG+TGG + chr5_1:64241401-64241420 None:intergenic 55.0%
AAGATGTAGGCGGACAGTGC+AGG - chr5_1:64241469-64241488 Msa0743720:five_prime_UTR 55.0%
ACTGAACCTGGGTCACCACC+AGG - chr5_1:64238626-64238645 Msa0743720:CDS 60.0%
! TTGGAACCTGGTGGTGACCC+AGG + chr5_1:64238635-64238654 None:intergenic 60.0%
GGAGCCTTCTGCTGATCCAG+TGG - chr5_1:64239499-64239518 Msa0743720:CDS 60.0%
! CGAGGAAGAGCGTGTTCCTG+TGG - chr5_1:64239541-64239560 Msa0743720:CDS 60.0%
! GCCAAGAGCTTGCTTGGGCT+AGG + chr5_1:64240137-64240156 None:intergenic 60.0%
GCCAAGTTCATCAGCGGCAC+TGG - chr5_1:64241291-64241310 Msa0743720:five_prime_UTR 60.0%
! GCCAGTGCCGCTGATGAACT+TGG + chr5_1:64241295-64241314 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 64238516 64241539 64238516 ID=Msa0743720;Name=Msa0743720
chr5_1 mRNA 64238516 64241539 64238516 ID=Msa0743720-mRNA-1;Parent=Msa0743720;Name=Msa0743720-mRNA-1;_AED=0.39;_eAED=0.39;_QI=300|1|1|1|1|1|3|62|438
chr5_1 exon 64238516 64238900 64238516 ID=Msa0743720-mRNA-1:exon:18996;Parent=Msa0743720-mRNA-1
chr5_1 exon 64239499 64239567 64239499 ID=Msa0743720-mRNA-1:exon:18995;Parent=Msa0743720-mRNA-1
chr5_1 exon 64240315 64241539 64240315 ID=Msa0743720-mRNA-1:exon:18994;Parent=Msa0743720-mRNA-1
chr5_1 five_prime_UTR 64241240 64241539 64241240 ID=Msa0743720-mRNA-1:five_prime_utr;Parent=Msa0743720-mRNA-1
chr5_1 CDS 64240315 64241239 64240315 ID=Msa0743720-mRNA-1:cds;Parent=Msa0743720-mRNA-1
chr5_1 CDS 64239499 64239567 64239499 ID=Msa0743720-mRNA-1:cds;Parent=Msa0743720-mRNA-1
chr5_1 CDS 64238578 64238900 64238578 ID=Msa0743720-mRNA-1:cds;Parent=Msa0743720-mRNA-1
chr5_1 three_prime_UTR 64238516 64238577 64238516 ID=Msa0743720-mRNA-1:three_prime_utr;Parent=Msa0743720-mRNA-1
Gene Sequence

>Msa0743720

ATGGAGAGATTAAAGCTTAGAGAGGAGTTTCACTTGGAGAGACTTTCAAGGGTGTATGCTGAGTCTGAATTTAAGAAAAGAGAGGAAATTTGTGAGAAAGGGAAGAAAGTGCAAGAAAGTTATGAAGCTCTTTTGAAAGAAGTTAAGGTAAATAGATTAGCTGATAGAAAAACTAATGAAGAGTTAGAAAAGAAGAACAATGAATTGGAGGTTGAAATTAAGAATTTGAAGGAGAAATGTGTTGATCGTATCAATGAAGTTGATGTATTAAGAACAAAAATTGTTGAATTAGAGGATCAGGTTTTAGAGTTAAAGAAGATCAAGAAAAAATGGGAGGAAGATGACATTGAATTGGGTGAATTAAGAAAAATGACTGGTGAATTAGAGAGTAAGGTTTTGGAGTTGACGAAGTCAAAGGAAAAGTGGCTAGATGATAAAAATGCTTTGGATGGACTTAAGGTTAAAATTGGAGAATTGGAGGAGACAGTAAAGAAGAATTTGGCAACGATGAGTGAGTTGAGGAATGAAAGCAGCAAATTGGCAGAGGAGAAGCGCGAAGCCGAGACATTACTTGAGGCTTTGAAGAGGAAGTTTATTCGACTGCGTGAAAGAGTAACAACGTTGGAGGAAGATCTCATTCTTTTGTCGGGCTTAGATGCCTCTATTGGTGGCAACAATGAGGGGGAGCCTTCTGCTGATCCAGTGGTTCCAAGTTCTGAAGAGAGCGAGGAAGAGCGTGTTCCTGTGGTTGGCCCTTTTGAAGATAACGAGGACGAGAATGCTGGTGAAGATGAGTTCATAAATGACATTGTTGACGAGGCTGCTCCTTTACCAATAAATCAAGATGATCATTACACTCTTGGAGTTGCTGCTAGTACTCAGTCACCGAGCAAAGGGATCAAGGATGCTCAAGGTTCATCATCAGGTGAAGAGTGTTGGATGGTATACGCTAGAAAGCCCAGGAAAACGGTTGAGATTACAGGGTCTTGTGGAGCCGGTGGAAGAGTGAAACTGGAAAATGAGATTGAGATCATAAATCTTGACGACGACGACGACGACGATGATCAATCTATGTCTCAAGGAGTACATTTAAAGAAAGCTAGTTTTGGAATCACTGTGAAGATTGAAGAGCCAAGTTCATCAGCGGCACTGGCAACACAACAAAAAAGCAAATTTGCCAATGCAGTTGACACAGTCAAAAGAAAATTTTCTTTCAGCGACAGTGAAACCTCCACTTCCACCTCCACTTCTACTTCCTCCGATGGTTCATGTCTCGATAATCTTACAAGGTCTGATGCAAAAAAGAAAAAGATGTAG

Protein sequence

>Msa0743720

MERLKLREEFHLERLSRVYAESEFKKREEICEKGKKVQESYEALLKEVKVNRLADRKTNEELEKKNNELEVEIKNLKEKCVDRINEVDVLRTKIVELEDQVLELKKIKKKWEEDDIELGELRKMTGELESKVLELTKSKEKWLDDKNALDGLKVKIGELEETVKKNLATMSELRNESSKLAEEKREAETLLEALKRKFIRLRERVTTLEEDLILLSGLDASIGGNNEGEPSADPVVPSSEESEEERVPVVGPFEDNEDENAGEDEFINDIVDEAAPLPINQDDHYTLGVAASTQSPSKGIKDAQGSSSGEECWMVYARKPRKTVEITGSCGAGGRVKLENEIEIINLDDDDDDDDQSMSQGVHLKKASFGITVKIEEPSSSAALATQQKSKFANAVDTVKRKFSFSDSETSTSTSTSTSSDGSCLDNLTRSDAKKKKM*