Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0349720 | XP_003598630.1 | 100.000 | 304 | 0 | 0 | 1 | 304 | 1 | 304 | 0.0 | 640 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0349720 | sp|Q10L91|DIS1_ORYSJ | 83.113 | 302 | 49 | 2 | 3 | 304 | 2 | 301 | 0.0 | 530 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0349720 | A8W462 | 100.000 | 304 | 0 | 0 | 1 | 304 | 1 | 304 | 0.0 | 640 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0349720 | Msa0396520 | 0.947728 | 3.819709e-106 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0349720 | MtrunA17_Chr3g0083571 | 100.000 | 304 | 0 | 0 | 1 | 304 | 1 | 304 | 0.0 | 640 |
| Msa0349720 | MtrunA17_Chr8g0352701 | 84.539 | 304 | 47 | 0 | 1 | 304 | 1 | 304 | 0.0 | 556 |
| Msa0349720 | MtrunA17_Chr3g0126851 | 79.630 | 270 | 54 | 1 | 36 | 304 | 42 | 311 | 4.12e-169 | 471 |
| Msa0349720 | MtrunA17_Chr1g0147041 | 83.333 | 258 | 43 | 0 | 47 | 304 | 62 | 319 | 2.12e-168 | 470 |
| Msa0349720 | MtrunA17_Chr8g0346801 | 77.256 | 277 | 62 | 1 | 29 | 304 | 19 | 295 | 7.76e-165 | 460 |
| Msa0349720 | MtrunA17_Chr7g0275701 | 79.008 | 262 | 55 | 0 | 43 | 304 | 51 | 312 | 2.02e-162 | 454 |
| Msa0349720 | MtrunA17_Chr7g0258941 | 73.704 | 270 | 67 | 1 | 38 | 303 | 40 | 309 | 3.56e-153 | 431 |
| Msa0349720 | MtrunA17_Chr1g0175721 | 74.525 | 263 | 66 | 1 | 43 | 304 | 47 | 309 | 2.61e-152 | 428 |
| Msa0349720 | MtrunA17_Chr7g0223111 | 26.147 | 218 | 149 | 5 | 45 | 262 | 31 | 236 | 7.14e-22 | 94.0 |
| Msa0349720 | MtrunA17_Chr5g0433631 | 26.778 | 239 | 159 | 5 | 23 | 261 | 9 | 231 | 1.84e-21 | 92.8 |
| Msa0349720 | MtrunA17_Chr5g0428191 | 25.822 | 213 | 142 | 5 | 53 | 262 | 11 | 210 | 3.90e-19 | 85.9 |
| Msa0349720 | MtrunA17_Chr5g0433661 | 26.860 | 242 | 149 | 8 | 30 | 262 | 22 | 244 | 1.18e-18 | 85.1 |
| Msa0349720 | MtrunA17_Chr4g0051351 | 32.479 | 117 | 77 | 1 | 52 | 168 | 96 | 210 | 4.60e-18 | 83.2 |
| Msa0349720 | MtrunA17_Chr5g0433531 | 32.402 | 179 | 105 | 5 | 46 | 219 | 4 | 171 | 5.31e-18 | 82.8 |
| Msa0349720 | MtrunA17_Chr5g0424971 | 30.405 | 148 | 95 | 5 | 41 | 185 | 4 | 146 | 1.34e-17 | 81.6 |
| Msa0349720 | MtrunA17_Chr5g0433541 | 27.907 | 215 | 135 | 6 | 52 | 261 | 10 | 209 | 2.29e-17 | 79.7 |
| Msa0349720 | MtrunA17_Chr5g0433551 | 27.907 | 215 | 135 | 6 | 52 | 261 | 10 | 209 | 2.29e-17 | 79.7 |
| Msa0349720 | MtrunA17_Chr5g0433411 | 25.000 | 244 | 166 | 7 | 54 | 296 | 34 | 261 | 4.12e-17 | 80.5 |
| Msa0349720 | MtrunA17_Chr7g0259431 | 36.000 | 100 | 62 | 1 | 69 | 168 | 9 | 106 | 3.47e-16 | 77.4 |
| Msa0349720 | MtrunA17_Chr2g0298951 | 31.858 | 113 | 72 | 2 | 69 | 178 | 9 | 119 | 5.12e-15 | 74.3 |
| Msa0349720 | MtrunA17_Chr1g0169381 | 31.897 | 116 | 76 | 2 | 53 | 168 | 11 | 123 | 7.06e-15 | 70.9 |
| Msa0349720 | MtrunA17_Chr5g0433731 | 26.887 | 212 | 125 | 10 | 60 | 262 | 1 | 191 | 6.49e-14 | 70.5 |
| Msa0349720 | MtrunA17_Chr5g0433521 | 28.205 | 156 | 96 | 5 | 69 | 219 | 23 | 167 | 1.59e-12 | 67.0 |
| Msa0349720 | MtrunA17_Chr1g0169371 | 23.000 | 200 | 129 | 7 | 70 | 262 | 3 | 184 | 7.66e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0349720 | AT3G61790.1 | 82.239 | 259 | 46 | 0 | 46 | 304 | 53 | 311 | 1.44e-166 | 466 |
| Msa0349720 | AT4G27880.1 | 79.775 | 267 | 53 | 1 | 39 | 304 | 46 | 312 | 7.30e-165 | 461 |
| Msa0349720 | AT3G58040.1 | 79.070 | 258 | 54 | 0 | 47 | 304 | 51 | 308 | 4.05e-159 | 446 |
| Msa0349720 | AT3G58040.3 | 79.070 | 258 | 54 | 0 | 47 | 304 | 51 | 308 | 4.05e-159 | 446 |
| Msa0349720 | AT2G41980.1 | 78.295 | 258 | 56 | 0 | 47 | 304 | 48 | 305 | 2.34e-158 | 444 |
| Msa0349720 | AT5G53360.1 | 85.784 | 204 | 29 | 0 | 101 | 304 | 15 | 218 | 9.12e-136 | 384 |
| Msa0349720 | AT5G53360.3 | 85.784 | 204 | 29 | 0 | 101 | 304 | 15 | 218 | 9.12e-136 | 384 |
| Msa0349720 | AT3G58040.2 | 73.964 | 169 | 38 | 1 | 47 | 209 | 51 | 219 | 4.40e-88 | 263 |
| Msa0349720 | AT3G13672.1 | 58.333 | 168 | 67 | 1 | 140 | 304 | 45 | 212 | 1.84e-73 | 225 |
| Msa0349720 | AT3G13672.2 | 50.769 | 195 | 66 | 2 | 140 | 304 | 45 | 239 | 9.01e-68 | 212 |
| Msa0349720 | AT5G53360.2 | 87.736 | 106 | 13 | 0 | 199 | 304 | 60 | 165 | 1.64e-66 | 206 |
| Msa0349720 | AT5G37870.1 | 28.251 | 223 | 150 | 5 | 52 | 271 | 41 | 256 | 7.68e-24 | 98.6 |
| Msa0349720 | AT5G37890.1 | 26.908 | 249 | 163 | 7 | 52 | 296 | 47 | 280 | 1.13e-22 | 95.5 |
| Msa0349720 | AT5G37930.1 | 36.585 | 123 | 76 | 1 | 52 | 174 | 109 | 229 | 8.68e-22 | 94.4 |
| Msa0349720 | AT5G37910.1 | 35.537 | 121 | 76 | 1 | 52 | 172 | 34 | 152 | 8.71e-21 | 90.1 |
| Msa0349720 | AT5G62800.2 | 28.163 | 245 | 144 | 8 | 43 | 271 | 28 | 256 | 8.34e-20 | 88.2 |
| Msa0349720 | AT5G62800.1 | 28.163 | 245 | 144 | 8 | 43 | 271 | 28 | 256 | 1.28e-19 | 88.2 |
| Msa0349720 | AT1G66650.1 | 35.556 | 135 | 77 | 3 | 37 | 170 | 74 | 199 | 1.97e-19 | 87.4 |
| Msa0349720 | AT1G66660.2 | 37.500 | 112 | 68 | 1 | 52 | 163 | 102 | 211 | 3.72e-17 | 81.3 |
| Msa0349720 | AT1G66620.1 | 34.188 | 117 | 75 | 1 | 52 | 168 | 40 | 154 | 5.43e-17 | 80.1 |
| Msa0349720 | AT1G66630.1 | 36.066 | 122 | 74 | 2 | 52 | 171 | 45 | 164 | 2.79e-16 | 78.2 |
| Msa0349720 | AT1G66610.2 | 44.156 | 77 | 41 | 1 | 39 | 115 | 146 | 220 | 5.43e-14 | 70.5 |
Find 88 sgRNAs with CRISPR-Local
Find 256 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACTTTGTGATCATCTTTC+AGG | 0.107653 | 3_1:+13760825 | None:intergenic |
| TATATTCTGCATTGTGATTT+AGG | 0.136659 | 3_1:-13759791 | Msa0349720:three_prime_UTR |
| CCTTGTAAATATCAAGGTTT+TGG | 0.179238 | 3_1:-13760977 | Msa0349720:CDS |
| TTTGATCAAACCATCATTTC+AGG | 0.216931 | 3_1:-13763497 | Msa0349720:intron |
| GCCATATTTGGCACACATTA+AGG | 0.227588 | 3_1:+13759680 | None:intergenic |
| AAGTGGAAATGATGAGAAAT+AGG | 0.232134 | 3_1:+13763540 | None:intergenic |
| ATCCTTTCTTTGATGATATA+CGG | 0.258381 | 3_1:-13762035 | Msa0349720:CDS |
| TGGCTTTCCCTAATGCTTCT+AGG | 0.260871 | 3_1:+13760059 | None:intergenic |
| GCCAGCGTATGGACAGTTAT+AGG | 0.313869 | 3_1:+13760892 | None:intergenic |
| CAGACTGTTGTTAAACCTAA+TGG | 0.317142 | 3_1:-13761940 | Msa0349720:CDS |
| AGTCTTGAGGTAGGTGGAAA+TGG | 0.332194 | 3_1:-13760107 | Msa0349720:CDS |
| CCACTTCATTCTCTCTTCAA+TGG | 0.350717 | 3_1:-13763523 | Msa0349720:five_prime_UTR |
| TACGAGTTACCGGAAGGATT+TGG | 0.352091 | 3_1:-13759947 | Msa0349720:CDS |
| ATAGGATCATTTACGAGTTC+AGG | 0.352374 | 3_1:+13761964 | None:intergenic |
| AGGGAGTGCCTAGAAGCATT+AGG | 0.370736 | 3_1:-13760067 | Msa0349720:CDS |
| CTGCTTGAAACAGTCCCATT+AGG | 0.388735 | 3_1:+13761925 | None:intergenic |
| CTGCTCTTTCCAAATCCTTC+CGG | 0.395229 | 3_1:+13759938 | None:intergenic |
| CGTCGGTGATGTACAATTCT+TGG | 0.396672 | 3_1:-13760855 | Msa0349720:CDS |
| CCAGCGTATGGACAGTTATA+GGG | 0.402731 | 3_1:+13760893 | None:intergenic |
| GGTTTAACAACAGTCTGTAT+AGG | 0.402918 | 3_1:+13761946 | None:intergenic |
| GAACTTCCTTGTAAATATCA+AGG | 0.422080 | 3_1:-13760983 | Msa0349720:CDS |
| AGACTGTTGTTAAACCTAAT+GGG | 0.431620 | 3_1:-13761939 | Msa0349720:CDS |
| TCTTTGTTGCAGTGCTCAAA+TGG | 0.438664 | 3_1:-13761118 | Msa0349720:intron |
| GAATTGAAACTACGAGTTAC+CGG | 0.441197 | 3_1:-13759957 | Msa0349720:CDS |
| TTTCATCAAAATATATGGTC+AGG | 0.446830 | 3_1:-13759746 | Msa0349720:three_prime_UTR |
| TTGCAGACGCGCACAAATGA+AGG | 0.448090 | 3_1:-13763643 | Msa0349720:five_prime_UTR |
| TGTTAGTGGTATGAATCATC+TGG | 0.448409 | 3_1:-13759818 | Msa0349720:three_prime_UTR |
| TCTGTTGACTCTTCAGTTTG+AGG | 0.451697 | 3_1:+13761991 | None:intergenic |
| ATGACCGGTGCCCTACTTGT+AGG | 0.452100 | 3_1:-13761060 | Msa0349720:CDS |
| GGGAGTGCCTAGAAGCATTA+GGG | 0.471441 | 3_1:-13760066 | Msa0349720:CDS |
| AATGGTCACACTTTATGCTC+TGG | 0.475297 | 3_1:-13761100 | Msa0349720:CDS |
| CCAAAACCTTGATATTTACA+AGG | 0.480693 | 3_1:+13760977 | None:intergenic |
| TACAAGTAGGGCACCGGTCA+TGG | 0.488202 | 3_1:+13761062 | None:intergenic |
| CATTTGTGCGCGTCTGCAAG+TGG | 0.490569 | 3_1:+13763647 | None:intergenic |
| AAATGCCACGTGGATGTTAA+CGG | 0.491591 | 3_1:-13760741 | Msa0349720:intron |
| GCTCGGCAATATTAGATGTC+TGG | 0.494495 | 3_1:-13761032 | Msa0349720:CDS |
| AATAATGTTTAGATGAAGAA+AGG | 0.496248 | 3_1:+13759902 | None:intergenic |
| TGGGAGGAAGATGACATGGC+AGG | 0.496612 | 3_1:-13760087 | Msa0349720:CDS |
| GTCTTGAGGTAGGTGGAAAT+GGG | 0.502924 | 3_1:-13760106 | Msa0349720:CDS |
| GGGCACCGGTCATGGACTCT+TGG | 0.507747 | 3_1:+13761070 | None:intergenic |
| GATGATATACGGAGCAGACC+TGG | 0.512497 | 3_1:-13762024 | Msa0349720:CDS |
| CTCCGTATATCATCAAAGAA+AGG | 0.512924 | 3_1:+13762033 | None:intergenic |
| GTTGACTCTTCAGTTTGAGG+AGG | 0.520191 | 3_1:+13761994 | None:intergenic |
| CGGTGATGTACAATTCTTGG+TGG | 0.525654 | 3_1:-13760852 | Msa0349720:CDS |
| GTTGAAAAGCTTCAAAATGC+AGG | 0.526970 | 3_1:+13760204 | None:intergenic |
| CGAGCTCATGCCTACAAGTA+GGG | 0.527877 | 3_1:+13761050 | None:intergenic |
| ACGAAGGGGCTGCTGATCGT+TGG | 0.529410 | 3_1:-13762081 | Msa0349720:intron |
| CAATTCCTTCCTATCACCCC+CGG | 0.530867 | 3_1:+13759974 | None:intergenic |
| CCGAGCTCATGCCTACAAGT+AGG | 0.541442 | 3_1:+13761049 | None:intergenic |
| CAATATTAGATGTCTGGCAT+TGG | 0.542091 | 3_1:-13761026 | Msa0349720:CDS |
| AAAACAACCTGGTGGATTGG+AGG | 0.544752 | 3_1:+13761856 | None:intergenic |
| ATGATATACGGAGCAGACCT+GGG | 0.547918 | 3_1:-13762023 | Msa0349720:CDS |
| GCACATTCTGAGCCAGCGTA+TGG | 0.548394 | 3_1:+13760881 | None:intergenic |
| GGCTCAGAATGTGCTGTCGT+CGG | 0.549909 | 3_1:-13760872 | Msa0349720:CDS |
| AAACAACCTGGTGGATTGGA+GGG | 0.552550 | 3_1:+13761857 | None:intergenic |
| AGTGGAAATGATGAGAAATA+GGG | 0.571708 | 3_1:+13763541 | None:intergenic |
| TAGATGTCTGGCATTGGAGA+AGG | 0.574141 | 3_1:-13761020 | Msa0349720:CDS |
| ATTCTGCATTGTGATTTAGG+AGG | 0.574981 | 3_1:-13759788 | Msa0349720:three_prime_UTR |
| ATCAAAATATATGGTCAGGA+AGG | 0.576115 | 3_1:-13759742 | Msa0349720:three_prime_UTR |
| GTTTGAGGAGGATCAACCCC+AGG | 0.578379 | 3_1:+13762006 | None:intergenic |
| TTGAGGTAGGTGGAAATGGG+AGG | 0.580688 | 3_1:-13760103 | Msa0349720:CDS |
| GGGAGGAAGATGACATGGCA+GGG | 0.581927 | 3_1:-13760086 | Msa0349720:CDS |
| CTATGTCAAATCAAATCCAC+AGG | 0.591513 | 3_1:-13760771 | Msa0349720:CDS |
| TTGACGGTCTCATCATTCAG+AGG | 0.602337 | 3_1:-13760016 | Msa0349720:CDS |
| GCAAACCAAGAGTCCATGAC+CGG | 0.602981 | 3_1:-13761075 | Msa0349720:CDS |
| CATGCCTACAAGTAGGGCAC+CGG | 0.605884 | 3_1:+13761056 | None:intergenic |
| TACATAGCATTCAAGCACAC+AGG | 0.610121 | 3_1:+13761880 | None:intergenic |
| ACCTACAGTCTTGAGGTAGG+TGG | 0.614102 | 3_1:-13760113 | Msa0349720:CDS |
| AACTGTCACGAACCTTGCGG+TGG | 0.618648 | 3_1:+13760039 | None:intergenic |
| TGCAGACGCGCACAAATGAA+GGG | 0.624483 | 3_1:-13763642 | Msa0349720:five_prime_UTR |
| CCCTATAACTGTCCATACGC+TGG | 0.625668 | 3_1:-13760893 | Msa0349720:CDS |
| GAACTATACCTACAGTCTTG+AGG | 0.625891 | 3_1:-13760120 | Msa0349720:CDS |
| CACAAAGTTGACATGCATAG+TGG | 0.627122 | 3_1:-13760812 | Msa0349720:CDS |
| TATGTACCCTCCAATCCACC+AGG | 0.632101 | 3_1:-13761863 | Msa0349720:intron |
| ATGTCTGGCATTGGAGAAGG+TGG | 0.632129 | 3_1:-13761017 | Msa0349720:CDS |
| CATTAGGGAAAGCCACCGCA+AGG | 0.634165 | 3_1:-13760051 | Msa0349720:CDS |
| GAAATGGGAGGAAGATGACA+TGG | 0.639042 | 3_1:-13760091 | Msa0349720:CDS |
| ACATAGCATTCAAGCACACA+GGG | 0.641099 | 3_1:+13761881 | None:intergenic |
| TCTCATCATTCAGAGGAACA+TGG | 0.653246 | 3_1:-13760009 | Msa0349720:CDS |
| CCATTGAAGAGAGAATGAAG+TGG | 0.654250 | 3_1:+13763523 | None:intergenic |
| TGAAACTACGAGTTACCGGA+AGG | 0.656079 | 3_1:-13759953 | Msa0349720:CDS |
| CCTACTTGTAGGCATGAGCT+CGG | 0.657939 | 3_1:-13761049 | Msa0349720:CDS |
| TATACCTACAGTCTTGAGGT+AGG | 0.664992 | 3_1:-13760116 | Msa0349720:CDS |
| TCCACCTACCTCAAGACTGT+AGG | 0.671872 | 3_1:+13760112 | None:intergenic |
| TGATATACGGAGCAGACCTG+GGG | 0.690514 | 3_1:-13762022 | Msa0349720:CDS |
| CAAAACTGTCACGAACCTTG+CGG | 0.727655 | 3_1:+13760036 | None:intergenic |
| AGGAAGTTGAAAATGCCACG+TGG | 0.762196 | 3_1:-13760751 | Msa0349720:CDS |
| GAATACCGTTAACATCCACG+TGG | 0.817117 | 3_1:+13760736 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAATAAGAAAATAAGT+TGG | + | chr3_1:13759953-13759972 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTTTGCATTTTA+AGG | - | chr3_1:13760214-13760233 | Msa0349720:CDS | 10.0% |
| !!! | TTTTTTTTTTTGCATTTTAA+GGG | - | chr3_1:13760215-13760234 | Msa0349720:CDS | 10.0% |
| !! | ATTAATTAGTATTTGAATTA+AGG | - | chr3_1:13761098-13761117 | Msa0349720:CDS | 10.0% |
| !! | CATTTAAAAAAAAATTCATA+CGG | + | chr3_1:13761255-13761274 | None:intergenic | 10.0% |
| !!! | ATTTTTTTTTAAATGATGAT+TGG | - | chr3_1:13761260-13761279 | Msa0349720:intron | 10.0% |
| !! | TTATATAAATCAAAATAGAA+GGG | + | chr3_1:13761815-13761834 | None:intergenic | 10.0% |
| !! | TTTATATAAATCAAAATAGA+AGG | + | chr3_1:13761816-13761835 | None:intergenic | 10.0% |
| !! | TCAAAATAAACAAAAAATGT+TGG | + | chr3_1:13760093-13760112 | None:intergenic | 15.0% |
| !! | TATATAAATCAAAATAGAAG+GGG | + | chr3_1:13761814-13761833 | None:intergenic | 15.0% |
| !! | TAATGAATTCACAAATTTAT+AGG | + | chr3_1:13762236-13762255 | None:intergenic | 15.0% |
| !!! | TTACTTTTCATCAAAATATA+TGG | - | chr3_1:13763642-13763661 | Msa0349720:five_prime_UTR | 15.0% |
| !! | AAAAAAAATACCTGAAATGA+TGG | + | chr3_1:13759909-13759928 | None:intergenic | 20.0% |
| !!! | TTTTACTTGTTTTTGTTTCT+GGG | - | chr3_1:13759978-13759997 | Msa0349720:CDS | 20.0% |
| !!! | TTATGAATGTTTTCATTGAT+GGG | - | chr3_1:13760020-13760039 | Msa0349720:CDS | 20.0% |
| !!! | TTTTACTTGTTTTTGTTTCT+GGG | - | chr3_1:13759978-13759997 | Msa0349720:CDS | 20.0% |
| !! | ATAATCAAACAAATGAATGA+AGG | + | chr3_1:13760790-13760809 | None:intergenic | 20.0% |
| !!! | TGATCATTTTATCTTATGTT+AGG | - | chr3_1:13761069-13761088 | Msa0349720:CDS | 20.0% |
| !! | AATATACAATGCTGTAAAAA+TGG | - | chr3_1:13761215-13761234 | Msa0349720:intron | 20.0% |
| !!! | TTTTTTTTTTTCATTCACGA+AGG | - | chr3_1:13761296-13761315 | Msa0349720:intron | 20.0% |
| !!! | TTTTTTTTTTCATTCACGAA+GGG | - | chr3_1:13761297-13761316 | Msa0349720:intron | 20.0% |
| !! | TATTTGTAGCTAATCTAAAT+AGG | - | chr3_1:13762082-13762101 | Msa0349720:intron | 20.0% |
| !! | ACACTTTCAATATAAAATGT+CGG | + | chr3_1:13762792-13762811 | None:intergenic | 20.0% |
| !!! | AAGAAATCATATTTTAGTAG+TGG | - | chr3_1:13763011-13763030 | Msa0349720:intron | 20.0% |
| !! | AATAATGTTTAGATGAAGAA+AGG | + | chr3_1:13763494-13763513 | None:intergenic | 20.0% |
| !!! | GTTTTACTTGTTTTTGTTTC+TGG | - | chr3_1:13759977-13759996 | Msa0349720:CDS | 25.0% |
| !! | CTTATGAATGTTTTCATTGA+TGG | - | chr3_1:13760019-13760038 | Msa0349720:CDS | 25.0% |
| !! | TATGAATGTTTTCATTGATG+GGG | - | chr3_1:13760021-13760040 | Msa0349720:CDS | 25.0% |
| !!! | GTTTTACTTGTTTTTGTTTC+TGG | - | chr3_1:13759977-13759996 | Msa0349720:CDS | 25.0% |
| !! | TCATGAATGTTTTCATTGAT+GGG | - | chr3_1:13760157-13760176 | Msa0349720:CDS | 25.0% |
| !!! | TTTTTTTTGCATTTTAAGGG+TGG | - | chr3_1:13760218-13760237 | Msa0349720:CDS | 25.0% |
| !! | TTAAGGTTAGGATTTTTGAA+TGG | - | chr3_1:13760283-13760302 | Msa0349720:intron | 25.0% |
| !! | AAAGTGAAGAATGTATGTTT+TGG | - | chr3_1:13760352-13760371 | Msa0349720:intron | 25.0% |
| !! | CAATGCTTAAAATAACGTTT+TGG | - | chr3_1:13760442-13760461 | Msa0349720:intron | 25.0% |
| ! | AGTATTAAAATTGAGTAACC+AGG | + | chr3_1:13760598-13760617 | None:intergenic | 25.0% |
| !!! | TTTTATGTCTTGCTAGTTTA+TGG | - | chr3_1:13760748-13760767 | Msa0349720:CDS | 25.0% |
| ! | ACTAACTTCAAGTATTCAAA+TGG | + | chr3_1:13760879-13760898 | None:intergenic | 25.0% |
| ! | AGATTATGTTGTTCTGTATA+AGG | - | chr3_1:13760961-13760980 | Msa0349720:CDS | 25.0% |
| ! | GATTATGTTGTTCTGTATAA+GGG | - | chr3_1:13760962-13760981 | Msa0349720:CDS | 25.0% |
| ! | AATGATCAACATTTCAACAA+TGG | + | chr3_1:13761057-13761076 | None:intergenic | 25.0% |
| !! | TCATTTTATCTTATGTTAGG+TGG | - | chr3_1:13761072-13761091 | Msa0349720:CDS | 25.0% |
| ! | GAATTAAGGTTATCTTATGA+TGG | - | chr3_1:13761112-13761131 | Msa0349720:intron | 25.0% |
| !!! | TGTTTGGTGATTACTTTTTA+GGG | - | chr3_1:13761156-13761175 | Msa0349720:intron | 25.0% |
| !!! | TTTTTTTTTCATTCACGAAG+GGG | - | chr3_1:13761298-13761317 | Msa0349720:intron | 25.0% |
| !! | ATCCTTTCTTTGATGATATA+CGG | - | chr3_1:13761358-13761377 | Msa0349720:intron | 25.0% |
| !!! | TTTTAACTAGTGTTGTCAAA+TGG | - | chr3_1:13761633-13761652 | Msa0349720:intron | 25.0% |
| !!! | ACTAACTGCTATTTTTTTTG+CGG | - | chr3_1:13761761-13761780 | Msa0349720:intron | 25.0% |
| ! | AACATGAAACATAAATTCAG+GGG | + | chr3_1:13761851-13761870 | None:intergenic | 25.0% |
| ! | GAACATGAAACATAAATTCA+GGG | + | chr3_1:13761852-13761871 | None:intergenic | 25.0% |
| ! | AGAACATGAAACATAAATTC+AGG | + | chr3_1:13761853-13761872 | None:intergenic | 25.0% |
| ! | ATCTCTAATTAAGAAAGCAA+GGG | + | chr3_1:13761884-13761903 | None:intergenic | 25.0% |
| ! | AATCTCTAATTAAGAAAGCA+AGG | + | chr3_1:13761885-13761904 | None:intergenic | 25.0% |
| ! | TGAAAAAAAAGAAACTCATC+AGG | - | chr3_1:13761951-13761970 | Msa0349720:CDS | 25.0% |
| !! | ACACTTACTATACTTACTTT+TGG | - | chr3_1:13761996-13762015 | Msa0349720:CDS | 25.0% |
| ! | ATTTGTCAATGATGTAGTTA+TGG | - | chr3_1:13762125-13762144 | Msa0349720:intron | 25.0% |
| !! | CTTGTAAATATCAAGGTTTT+GGG | - | chr3_1:13762417-13762436 | Msa0349720:intron | 25.0% |
| ! | ACTTTGCAAATTAACTAAAC+TGG | - | chr3_1:13762714-13762733 | Msa0349720:intron | 25.0% |
| !!! | TGTTATTTTTGTCATGCTTA+TGG | - | chr3_1:13762747-13762766 | Msa0349720:intron | 25.0% |
| !!! | TTTTATATTGAAAGTGTGTC+TGG | - | chr3_1:13762795-13762814 | Msa0349720:intron | 25.0% |
| ! | GAAAAGCAGAAAAAATTACA+GGG | + | chr3_1:13762972-13762991 | None:intergenic | 25.0% |
| ! | TATATTCTGCATTGTGATTT+AGG | - | chr3_1:13763602-13763621 | Msa0349720:five_prime_UTR | 25.0% |
| ! | TTTCATCAAAATATATGGTC+AGG | - | chr3_1:13763647-13763666 | Msa0349720:five_prime_UTR | 25.0% |
| AGTGGAAATGATGAGAAATA+GGG | + | chr3_1:13759855-13759874 | None:intergenic | 30.0% | |
| AAGTGGAAATGATGAGAAAT+AGG | + | chr3_1:13759856-13759875 | None:intergenic | 30.0% | |
| TTTGATCAAACCATCATTTC+AGG | - | chr3_1:13759896-13759915 | Msa0349720:intron | 30.0% | |
| CAATGAAAACATTCATGAGA+GGG | + | chr3_1:13760155-13760174 | None:intergenic | 30.0% | |
| TCAATGAAAACATTCATGAG+AGG | + | chr3_1:13760156-13760175 | None:intergenic | 30.0% | |
| ! | CTCATGAATGTTTTCATTGA+TGG | - | chr3_1:13760156-13760175 | Msa0349720:CDS | 30.0% |
| AAAATCTGCATACCATTTGA+GGG | + | chr3_1:13760329-13760348 | None:intergenic | 30.0% | |
| AAAAATCTGCATACCATTTG+AGG | + | chr3_1:13760330-13760349 | None:intergenic | 30.0% | |
| TTTGGATTATCATGCATTTG+TGG | - | chr3_1:13760370-13760389 | Msa0349720:intron | 30.0% | |
| !!! | TTACTCGATGTTTTAAAACC+CGG | - | chr3_1:13760552-13760571 | Msa0349720:intron | 30.0% |
| !!! | TTTTAAAACCCGGTTTGAAT+CGG | - | chr3_1:13760562-13760581 | Msa0349720:intron | 30.0% |
| AACTTCAAGTATTCAAATGG+TGG | + | chr3_1:13760876-13760895 | None:intergenic | 30.0% | |
| !! | TACTTGAAGTTAGTTTGTGT+AGG | - | chr3_1:13760885-13760904 | Msa0349720:CDS | 30.0% |
| !!! | GTGTTTGGTGATTACTTTTT+AGG | - | chr3_1:13761155-13761174 | Msa0349720:intron | 30.0% |
| TGCCAAAAACAATTAGCAAT+GGG | + | chr3_1:13761192-13761211 | None:intergenic | 30.0% | |
| TTGCCAAAAACAATTAGCAA+TGG | + | chr3_1:13761193-13761212 | None:intergenic | 30.0% | |
| AGACTGTTGTTAAACCTAAT+GGG | - | chr3_1:13761454-13761473 | Msa0349720:intron | 30.0% | |
| TCTCTAATTAAGAAAGCAAG+GGG | + | chr3_1:13761883-13761902 | None:intergenic | 30.0% | |
| AGTAAGTATAGTAAGTGTCA+TGG | + | chr3_1:13761994-13762013 | None:intergenic | 30.0% | |
| ATGATGTAGTTATGGTTCAA+AGG | - | chr3_1:13762133-13762152 | Msa0349720:intron | 30.0% | |
| ! | TAATTTTCCAACATGTCATG+TGG | - | chr3_1:13762156-13762175 | Msa0349720:intron | 30.0% |
| GAACTTCCTTGTAAATATCA+AGG | - | chr3_1:13762410-13762429 | Msa0349720:intron | 30.0% | |
| CCAAAACCTTGATATTTACA+AGG | + | chr3_1:13762419-13762438 | None:intergenic | 30.0% | |
| ! | CCTTGTAAATATCAAGGTTT+TGG | - | chr3_1:13762416-13762435 | Msa0349720:intron | 30.0% |
| !!! | GTTTTAGCTTGCTGTAATAT+GGG | + | chr3_1:13762457-13762476 | None:intergenic | 30.0% |
| !!! | TGTTTTAGCTTGCTGTAATA+TGG | + | chr3_1:13762458-13762477 | None:intergenic | 30.0% |
| TTGCAAAGTCAATAAAATGC+AGG | + | chr3_1:13762703-13762722 | None:intergenic | 30.0% | |
| TTGCAAATTAACTAAACTGG+TGG | - | chr3_1:13762717-13762736 | Msa0349720:intron | 30.0% | |
| GGAAAAGCAGAAAAAATTAC+AGG | + | chr3_1:13762973-13762992 | None:intergenic | 30.0% | |
| !! | CTTTTCTTGTTTAAGCTAGA+AGG | + | chr3_1:13762994-13763013 | None:intergenic | 30.0% |
| AACTTATAACCTTGTCTTTG+TGG | - | chr3_1:13763074-13763093 | Msa0349720:intron | 30.0% | |
| AAATCTATACCACAAAGACA+AGG | + | chr3_1:13763086-13763105 | None:intergenic | 30.0% | |
| !!! | TTCTAGGTTTTTAGTTGCTT+CGG | - | chr3_1:13763154-13763173 | Msa0349720:intron | 30.0% |
| !!! | CATTTTGAAGCTTTTCAACT+GGG | - | chr3_1:13763193-13763212 | Msa0349720:intron | 30.0% |
| ! | ATAGCATTTTTGCGGTTTAT+GGG | - | chr3_1:13763232-13763251 | Msa0349720:intron | 30.0% |
| ! | GTGCAAGTATTTTATGTTAG+TGG | - | chr3_1:13763561-13763580 | Msa0349720:five_prime_UTR | 30.0% |
| ATCAAAATATATGGTCAGGA+AGG | - | chr3_1:13763651-13763670 | Msa0349720:five_prime_UTR | 30.0% | |
| !!! | AGATCTGCTTGCTGTTTTTA+AGG | - | chr3_1:13760266-13760285 | Msa0349720:intron | 35.0% |
| !!! | TGCTTGCTGTTTTTAAGGTT+AGG | - | chr3_1:13760271-13760290 | Msa0349720:intron | 35.0% |
| !! | GTTTGTTGTAAACCCTCAAA+TGG | - | chr3_1:13760314-13760333 | Msa0349720:intron | 35.0% |
| ATTGCCAATCTCTTACAACT+TGG | + | chr3_1:13760529-13760548 | None:intergenic | 35.0% | |
| TGTCTCACTAGTTCAATCTA+CGG | - | chr3_1:13760684-13760703 | Msa0349720:intron | 35.0% | |
| TTGTCAAACTAACAAGACTG+TGG | - | chr3_1:13760820-13760839 | Msa0349720:CDS | 35.0% | |
| ATGTTGTTCTGTATAAGGGA+AGG | - | chr3_1:13760966-13760985 | Msa0349720:CDS | 35.0% | |
| AGGGAAGGTTAACACAATAA+TGG | - | chr3_1:13760981-13761000 | Msa0349720:CDS | 35.0% | |
| ! | AGCCCATTGCTAATTGTTTT+TGG | - | chr3_1:13761187-13761206 | Msa0349720:intron | 35.0% |
| ATTCATACGGTTCAGTTTCA+TGG | + | chr3_1:13761242-13761261 | None:intergenic | 35.0% | |
| CTCCGTATATCATCAAAGAA+AGG | + | chr3_1:13761363-13761382 | None:intergenic | 35.0% | |
| ATAGGATCATTTACGAGTTC+AGG | + | chr3_1:13761432-13761451 | None:intergenic | 35.0% | |
| GGTTTAACAACAGTCTGTAT+AGG | + | chr3_1:13761450-13761469 | None:intergenic | 35.0% | |
| CAGACTGTTGTTAAACCTAA+TGG | - | chr3_1:13761453-13761472 | Msa0349720:intron | 35.0% | |
| ATCAATGAAAAACAACCTGG+TGG | + | chr3_1:13761548-13761567 | None:intergenic | 35.0% | |
| !! | ATCGCTCATTGTTGATTTGT+GGG | - | chr3_1:13761566-13761585 | Msa0349720:intron | 35.0% |
| ! | TTCGCTAGTGTTTTGCAATA+CGG | - | chr3_1:13761676-13761695 | Msa0349720:intron | 35.0% |
| AGTATAGTAAGTGTCATGGT+TGG | + | chr3_1:13761990-13762009 | None:intergenic | 35.0% | |
| CAATATTAGATGTCTGGCAT+TGG | - | chr3_1:13762367-13762386 | Msa0349720:intron | 35.0% | |
| CAACTTTGTGATCATCTTTC+AGG | + | chr3_1:13762571-13762590 | None:intergenic | 35.0% | |
| CTATGTCAAATCAAATCCAC+AGG | - | chr3_1:13762622-13762641 | Msa0349720:intron | 35.0% | |
| TCAGTAACCAGTATCAGATA+CGG | + | chr3_1:13762835-13762854 | None:intergenic | 35.0% | |
| GTTGAAAAGCTTCAAAATGC+AGG | + | chr3_1:13763192-13763211 | None:intergenic | 35.0% | |
| !!! | GCATTTTGAAGCTTTTCAAC+TGG | - | chr3_1:13763192-13763211 | Msa0349720:intron | 35.0% |
| ! | CTGTCTACATAGCATTTTTG+CGG | - | chr3_1:13763224-13763243 | Msa0349720:intron | 35.0% |
| ! | CATAGCATTTTTGCGGTTTA+TGG | - | chr3_1:13763231-13763250 | Msa0349720:intron | 35.0% |
| GAATTGAAACTACGAGTTAC+CGG | - | chr3_1:13763436-13763455 | Msa0349720:intron | 35.0% | |
| TGTTAGTGGTATGAATCATC+TGG | - | chr3_1:13763575-13763594 | Msa0349720:five_prime_UTR | 35.0% | |
| ATTCTGCATTGTGATTTAGG+AGG | - | chr3_1:13763605-13763624 | Msa0349720:five_prime_UTR | 35.0% | |
| CCATTGAAGAGAGAATGAAG+TGG | + | chr3_1:13759873-13759892 | None:intergenic | 40.0% | |
| CCACTTCATTCTCTCTTCAA+TGG | - | chr3_1:13759870-13759889 | Msa0349720:intron | 40.0% | |
| !! | TGCATTTTAAGGGTGGTGTT+TGG | - | chr3_1:13760225-13760244 | Msa0349720:CDS | 40.0% |
| !! | TGTTTGGTTTGTGTGTGTTG+TGG | - | chr3_1:13760241-13760260 | Msa0349720:intron | 40.0% |
| !! | GTTTGGTTTGTGTGTGTTGT+GGG | - | chr3_1:13760242-13760261 | Msa0349720:intron | 40.0% |
| !! | ACGTTTTGGTGTGATTTGTG+TGG | - | chr3_1:13760456-13760475 | Msa0349720:intron | 40.0% |
| ! | TTTGGTGTGATTTGTGTGGA+TGG | - | chr3_1:13760460-13760479 | Msa0349720:intron | 40.0% |
| !! | TCCATACGACATTTTCAAGC+TGG | - | chr3_1:13760494-13760513 | Msa0349720:intron | 40.0% |
| !! | CCATACGACATTTTCAAGCT+GGG | - | chr3_1:13760495-13760514 | Msa0349720:intron | 40.0% |
| ! | TCAAACCAACCGATTCAAAC+CGG | + | chr3_1:13760574-13760593 | None:intergenic | 40.0% |
| CATCAGAGTCATGGTTCAAT+TGG | + | chr3_1:13760666-13760685 | None:intergenic | 40.0% | |
| !!! | CGGTGTGGTTTTTAAAGCAT+TGG | - | chr3_1:13760704-13760723 | Msa0349720:intron | 40.0% |
| !! | GCCACCATTTGTTGTTATGT+AGG | - | chr3_1:13760907-13760926 | Msa0349720:CDS | 40.0% |
| GCCTACATAACAACAAATGG+TGG | + | chr3_1:13760911-13760930 | None:intergenic | 40.0% | |
| CCTGCCTACATAACAACAAA+TGG | + | chr3_1:13760914-13760933 | None:intergenic | 40.0% | |
| !! | CCATTTGTTGTTATGTAGGC+AGG | - | chr3_1:13760911-13760930 | Msa0349720:CDS | 40.0% |
| TGTTATGTAGGCAGGTTAAG+AGG | - | chr3_1:13760919-13760938 | Msa0349720:CDS | 40.0% | |
| GTTATGTAGGCAGGTTAAGA+GGG | - | chr3_1:13760920-13760939 | Msa0349720:CDS | 40.0% | |
| CCAAACACAAGCTAACAGTA+GGG | + | chr3_1:13761143-13761162 | None:intergenic | 40.0% | |
| ACCAAACACAAGCTAACAGT+AGG | + | chr3_1:13761144-13761163 | None:intergenic | 40.0% | |
| !! | TCTGTTGACTCTTCAGTTTG+AGG | + | chr3_1:13761405-13761424 | None:intergenic | 40.0% |
| ACATAGCATTCAAGCACACA+GGG | + | chr3_1:13761515-13761534 | None:intergenic | 40.0% | |
| TACATAGCATTCAAGCACAC+AGG | + | chr3_1:13761516-13761535 | None:intergenic | 40.0% | |
| ! | TGAAAAACAACCTGGTGGAT+TGG | + | chr3_1:13761543-13761562 | None:intergenic | 40.0% |
| GCGATCAATGAAAAACAACC+TGG | + | chr3_1:13761551-13761570 | None:intergenic | 40.0% | |
| !! | GATCGCTCATTGTTGATTTG+TGG | - | chr3_1:13761565-13761584 | Msa0349720:intron | 40.0% |
| CGGTATTTAGTGCAAAGTGT+TGG | - | chr3_1:13761696-13761715 | Msa0349720:intron | 40.0% | |
| !! | GCAAAGTGTTGGTTACATAG+CGG | - | chr3_1:13761707-13761726 | Msa0349720:intron | 40.0% |
| TCTTTGTTGCAGTGCTCAAA+TGG | - | chr3_1:13762275-13762294 | Msa0349720:intron | 40.0% | |
| AATGGTCACACTTTATGCTC+TGG | - | chr3_1:13762293-13762312 | Msa0349720:intron | 40.0% | |
| !!! | TATCAAGGTTTTGGGTGCAT+AGG | - | chr3_1:13762425-13762444 | Msa0349720:intron | 40.0% |
| CACAAAGTTGACATGCATAG+TGG | - | chr3_1:13762581-13762600 | Msa0349720:intron | 40.0% | |
| AAATGCCACGTGGATGTTAA+CGG | - | chr3_1:13762652-13762671 | Msa0349720:intron | 40.0% | |
| CATTTGTCCGTATCTGATAC+TGG | - | chr3_1:13762825-13762844 | Msa0349720:intron | 40.0% | |
| TGATACACTGACACAGACAA+TGG | + | chr3_1:13762909-13762928 | None:intergenic | 40.0% | |
| ! | TACGTGAGTTAGCTGATTTC+TGG | - | chr3_1:13763118-13763137 | Msa0349720:intron | 40.0% |
| ! | ACGTGAGTTAGCTGATTTCT+GGG | - | chr3_1:13763119-13763138 | Msa0349720:intron | 40.0% |
| ! | TGAAGCTTTTCAACTGGGAA+TGG | - | chr3_1:13763198-13763217 | Msa0349720:intron | 40.0% |
| CGCAAAAATGCTATGTAGAC+AGG | + | chr3_1:13763226-13763245 | None:intergenic | 40.0% | |
| GAACTATACCTACAGTCTTG+AGG | - | chr3_1:13763273-13763292 | Msa0349720:intron | 40.0% | |
| TATACCTACAGTCTTGAGGT+AGG | - | chr3_1:13763277-13763296 | Msa0349720:intron | 40.0% | |
| !! | AAGGTTCGTGACAGTTTTGA+CGG | - | chr3_1:13763361-13763380 | Msa0349720:intron | 40.0% |
| TCTCATCATTCAGAGGAACA+TGG | - | chr3_1:13763384-13763403 | Msa0349720:intron | 40.0% | |
| ! | AACATGGCTCTCTTCTTTTC+CGG | - | chr3_1:13763400-13763419 | Msa0349720:intron | 40.0% |
| CCCAGCTTGAAAATGTCGTA+TGG | + | chr3_1:13760498-13760517 | None:intergenic | 45.0% | |
| !! | TACGACATTTTCAAGCTGGG+AGG | - | chr3_1:13760498-13760517 | Msa0349720:intron | 45.0% |
| CTGGCCAAGTTGTAAGAGAT+TGG | - | chr3_1:13760522-13760541 | Msa0349720:intron | 45.0% | |
| ! | AAAACCCGGTTTGAATCGGT+TGG | - | chr3_1:13760566-13760585 | Msa0349720:intron | 45.0% |
| ! | CAAACCAACCGATTCAAACC+GGG | + | chr3_1:13760573-13760592 | None:intergenic | 45.0% |
| !! | TGAATCGGTTGGTTTGATCC+TGG | - | chr3_1:13760577-13760596 | Msa0349720:intron | 45.0% |
| CTAGTGAGACATCAGAGTCA+TGG | + | chr3_1:13760675-13760694 | None:intergenic | 45.0% | |
| CACTAGTTCAATCTACGGTG+TGG | - | chr3_1:13760689-13760708 | Msa0349720:intron | 45.0% | |
| !! | AGACTGTGGTGTTGATTGCT+TGG | - | chr3_1:13760834-13760853 | Msa0349720:CDS | 45.0% |
| !! | TGGTGTTGATTGCTTGGAGT+TGG | - | chr3_1:13760840-13760859 | Msa0349720:CDS | 45.0% |
| !! | TGCTTGGAGTTGGTTTGTGT+AGG | - | chr3_1:13760850-13760869 | Msa0349720:CDS | 45.0% |
| !! | CCCTACTGTTAGCTTGTGTT+TGG | - | chr3_1:13761140-13761159 | Msa0349720:intron | 45.0% |
| ATGATATACGGAGCAGACCT+GGG | - | chr3_1:13761370-13761389 | Msa0349720:intron | 45.0% | |
| ! | GTTGACTCTTCAGTTTGAGG+AGG | + | chr3_1:13761402-13761421 | None:intergenic | 45.0% |
| CTGCTTGAAACAGTCCCATT+AGG | + | chr3_1:13761471-13761490 | None:intergenic | 45.0% | |
| !! | AAACAACCTGGTGGATTGGA+GGG | + | chr3_1:13761539-13761558 | None:intergenic | 45.0% |
| !! | AAAACAACCTGGTGGATTGG+AGG | + | chr3_1:13761540-13761559 | None:intergenic | 45.0% |
| ! | TGATTTGTGGGTTCCTGAGA+TGG | - | chr3_1:13761578-13761597 | Msa0349720:intron | 45.0% |
| TTACAACCACATGCCATCTC+AGG | + | chr3_1:13761594-13761613 | None:intergenic | 45.0% | |
| GGCATGTGGTTGTAACTTAC+AGG | - | chr3_1:13761599-13761618 | Msa0349720:intron | 45.0% | |
| GCTATAGCACTATAGCGTAG+CGG | - | chr3_1:13761731-13761750 | Msa0349720:intron | 45.0% | |
| TTTCCAACATGTCATGTGGC+TGG | - | chr3_1:13762160-13762179 | Msa0349720:intron | 45.0% | |
| CTGGTCTATGCTGAGACAAT+TGG | - | chr3_1:13762179-13762198 | Msa0349720:intron | 45.0% | |
| GCTCGGCAATATTAGATGTC+TGG | - | chr3_1:13762361-13762380 | Msa0349720:intron | 45.0% | |
| ! | TAGATGTCTGGCATTGGAGA+AGG | - | chr3_1:13762373-13762392 | Msa0349720:intron | 45.0% |
| CCAGCGTATGGACAGTTATA+GGG | + | chr3_1:13762503-13762522 | None:intergenic | 45.0% | |
| CGTCGGTGATGTACAATTCT+TGG | - | chr3_1:13762538-13762557 | Msa0349720:intron | 45.0% | |
| CGGTGATGTACAATTCTTGG+TGG | - | chr3_1:13762541-13762560 | Msa0349720:intron | 45.0% | |
| ! | GTGGCATTTTCAACTTCCTG+TGG | + | chr3_1:13762641-13762660 | None:intergenic | 45.0% |
| AGGAAGTTGAAAATGCCACG+TGG | - | chr3_1:13762642-13762661 | Msa0349720:intron | 45.0% | |
| GAATACCGTTAACATCCACG+TGG | + | chr3_1:13762660-13762679 | None:intergenic | 45.0% | |
| TGACACAACACTGACACAAG+TGG | - | chr3_1:13762852-13762871 | Msa0349720:intron | 45.0% | |
| ! | CGTGAGTTAGCTGATTTCTG+GGG | - | chr3_1:13763120-13763139 | Msa0349720:intron | 45.0% |
| !! | TGGGGCTCACTTTTGTTTCT+AGG | - | chr3_1:13763138-13763157 | Msa0349720:intron | 45.0% |
| AGTCTTGAGGTAGGTGGAAA+TGG | - | chr3_1:13763286-13763305 | Msa0349720:intron | 45.0% | |
| GTCTTGAGGTAGGTGGAAAT+GGG | - | chr3_1:13763287-13763306 | Msa0349720:intron | 45.0% | |
| GAAATGGGAGGAAGATGACA+TGG | - | chr3_1:13763302-13763321 | Msa0349720:intron | 45.0% | |
| TGGCTTTCCCTAATGCTTCT+AGG | + | chr3_1:13763337-13763356 | None:intergenic | 45.0% | |
| CAAAACTGTCACGAACCTTG+CGG | + | chr3_1:13763360-13763379 | None:intergenic | 45.0% | |
| TTGACGGTCTCATCATTCAG+AGG | - | chr3_1:13763377-13763396 | Msa0349720:intron | 45.0% | |
| ! | ACATGGCTCTCTTCTTTTCC+GGG | - | chr3_1:13763401-13763420 | Msa0349720:intron | 45.0% |
| TGAAACTACGAGTTACCGGA+AGG | - | chr3_1:13763440-13763459 | Msa0349720:intron | 45.0% | |
| TACGAGTTACCGGAAGGATT+TGG | - | chr3_1:13763446-13763465 | Msa0349720:intron | 45.0% | |
| CTGCTCTTTCCAAATCCTTC+CGG | + | chr3_1:13763458-13763477 | None:intergenic | 45.0% | |
| TTGCAGACGCGCACAAATGA+AGG | - | chr3_1:13759750-13759769 | Msa0349720:three_prime_UTR | 50.0% | |
| TGCAGACGCGCACAAATGAA+GGG | - | chr3_1:13759751-13759770 | Msa0349720:three_prime_UTR | 50.0% | |
| !! | CATTTTCAAGCTGGGAGGAC+TGG | - | chr3_1:13760503-13760522 | Msa0349720:intron | 50.0% |
| ATGTAGGCAGGTTAAGAGGG+TGG | - | chr3_1:13760923-13760942 | Msa0349720:CDS | 50.0% | |
| TGTAGGCAGGTTAAGAGGGT+GGG | - | chr3_1:13760924-13760943 | Msa0349720:CDS | 50.0% | |
| GATGATATACGGAGCAGACC+TGG | - | chr3_1:13761369-13761388 | Msa0349720:intron | 50.0% | |
| TGATATACGGAGCAGACCTG+GGG | - | chr3_1:13761371-13761390 | Msa0349720:intron | 50.0% | |
| TATGTACCCTCCAATCCACC+AGG | - | chr3_1:13761530-13761549 | Msa0349720:intron | 50.0% | |
| AGACCAGCCACATGACATGT+TGG | + | chr3_1:13762166-13762185 | None:intergenic | 50.0% | |
| GCAAACCAAGAGTCCATGAC+CGG | - | chr3_1:13762318-13762337 | Msa0349720:intron | 50.0% | |
| CGAGCTCATGCCTACAAGTA+GGG | + | chr3_1:13762346-13762365 | None:intergenic | 50.0% | |
| CCTACTTGTAGGCATGAGCT+CGG | - | chr3_1:13762344-13762363 | Msa0349720:intron | 50.0% | |
| ! | ATGTCTGGCATTGGAGAAGG+TGG | - | chr3_1:13762376-13762395 | Msa0349720:intron | 50.0% |
| CCCTATAACTGTCCATACGC+TGG | - | chr3_1:13762500-13762519 | Msa0349720:intron | 50.0% | |
| GCCAGCGTATGGACAGTTAT+AGG | + | chr3_1:13762504-13762523 | None:intergenic | 50.0% | |
| ACCTACAGTCTTGAGGTAGG+TGG | - | chr3_1:13763280-13763299 | Msa0349720:intron | 50.0% | |
| TCCACCTACCTCAAGACTGT+AGG | + | chr3_1:13763284-13763303 | None:intergenic | 50.0% | |
| TTGAGGTAGGTGGAAATGGG+AGG | - | chr3_1:13763290-13763309 | Msa0349720:intron | 50.0% | |
| !! | AGGGAGTGCCTAGAAGCATT+AGG | - | chr3_1:13763326-13763345 | Msa0349720:intron | 50.0% |
| !! | GGGAGTGCCTAGAAGCATTA+GGG | - | chr3_1:13763327-13763346 | Msa0349720:intron | 50.0% |
| ! | CATGGCTCTCTTCTTTTCCG+GGG | - | chr3_1:13763402-13763421 | Msa0349720:intron | 50.0% |
| ! | ATGGCTCTCTTCTTTTCCGG+GGG | - | chr3_1:13763403-13763422 | Msa0349720:intron | 50.0% |
| ! | TCTTCTTTTCCGGGGGTGAT+AGG | - | chr3_1:13763410-13763429 | Msa0349720:intron | 50.0% |
| CAATTCCTTCCTATCACCCC+CGG | + | chr3_1:13763422-13763441 | None:intergenic | 50.0% | |
| CATTTGTGCGCGTCTGCAAG+TGG | + | chr3_1:13759749-13759768 | None:intergenic | 55.0% | |
| GTTTGAGGAGGATCAACCCC+AGG | + | chr3_1:13761390-13761409 | None:intergenic | 55.0% | |
| TGGGTTCCTGAGATGGCATG+TGG | - | chr3_1:13761585-13761604 | Msa0349720:intron | 55.0% | |
| !! | TACAAGTAGGGCACCGGTCA+TGG | + | chr3_1:13762334-13762353 | None:intergenic | 55.0% |
| ATGACCGGTGCCCTACTTGT+AGG | - | chr3_1:13762333-13762352 | Msa0349720:intron | 55.0% | |
| CATGCCTACAAGTAGGGCAC+CGG | + | chr3_1:13762340-13762359 | None:intergenic | 55.0% | |
| CCGAGCTCATGCCTACAAGT+AGG | + | chr3_1:13762347-13762366 | None:intergenic | 55.0% | |
| GCACATTCTGAGCCAGCGTA+TGG | + | chr3_1:13762515-13762534 | None:intergenic | 55.0% | |
| GGCTCAGAATGTGCTGTCGT+CGG | - | chr3_1:13762521-13762540 | Msa0349720:intron | 55.0% | |
| TGGGAGGAAGATGACATGGC+AGG | - | chr3_1:13763306-13763325 | Msa0349720:intron | 55.0% | |
| GGGAGGAAGATGACATGGCA+GGG | - | chr3_1:13763307-13763326 | Msa0349720:intron | 55.0% | |
| CATTAGGGAAAGCCACCGCA+AGG | - | chr3_1:13763342-13763361 | Msa0349720:intron | 55.0% | |
| AACTGTCACGAACCTTGCGG+TGG | + | chr3_1:13763357-13763376 | None:intergenic | 55.0% | |
| ! | CTTTTCCGGGGGTGATAGGA+AGG | - | chr3_1:13763414-13763433 | Msa0349720:intron | 55.0% |
| ACGAAGGGGCTGCTGATCGT+TGG | - | chr3_1:13761312-13761331 | Msa0349720:intron | 60.0% | |
| !! | GGGCACCGGTCATGGACTCT+TGG | + | chr3_1:13762326-13762345 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 13759694 | 13763721 | 13759694 | ID=Msa0349720;Name=Msa0349720 |
| chr3_1 | mRNA | 13759694 | 13763721 | 13759694 | ID=Msa0349720-mRNA-1;Parent=Msa0349720;Name=Msa0349720-mRNA-1;_AED=0.06;_eAED=0.06;_QI=251|1|1|1|0.5|0.2|5|221|304 |
| chr3_1 | exon | 13759694 | 13759878 | 13759694 | ID=Msa0349720-mRNA-1:exon:3443;Parent=Msa0349720-mRNA-1 |
| chr3_1 | exon | 13759899 | 13760255 | 13759899 | ID=Msa0349720-mRNA-1:exon:3442;Parent=Msa0349720-mRNA-1 |
| chr3_1 | exon | 13760742 | 13761128 | 13760742 | ID=Msa0349720-mRNA-1:exon:3441;Parent=Msa0349720-mRNA-1 |
| chr3_1 | exon | 13761864 | 13762097 | 13761864 | ID=Msa0349720-mRNA-1:exon:3440;Parent=Msa0349720-mRNA-1 |
| chr3_1 | exon | 13763498 | 13763721 | 13763498 | ID=Msa0349720-mRNA-1:exon:3439;Parent=Msa0349720-mRNA-1 |
| chr3_1 | five_prime_UTR | 13763498 | 13763721 | 13763498 | ID=Msa0349720-mRNA-1:five_prime_utr;Parent=Msa0349720-mRNA-1 |
| chr3_1 | five_prime_UTR | 13762071 | 13762097 | 13762071 | ID=Msa0349720-mRNA-1:five_prime_utr;Parent=Msa0349720-mRNA-1 |
| chr3_1 | CDS | 13761864 | 13762070 | 13761864 | ID=Msa0349720-mRNA-1:cds;Parent=Msa0349720-mRNA-1 |
| chr3_1 | CDS | 13760742 | 13761128 | 13760742 | ID=Msa0349720-mRNA-1:cds;Parent=Msa0349720-mRNA-1 |
| chr3_1 | CDS | 13759935 | 13760255 | 13759935 | ID=Msa0349720-mRNA-1:cds;Parent=Msa0349720-mRNA-1 |
| chr3_1 | three_prime_UTR | 13759899 | 13759934 | 13759899 | ID=Msa0349720-mRNA-1:three_prime_utr;Parent=Msa0349720-mRNA-1 |
| chr3_1 | three_prime_UTR | 13759694 | 13759878 | 13759694 | ID=Msa0349720-mRNA-1:three_prime_utr;Parent=Msa0349720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
