Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0396520 | XP_003598630.1 | 100.000 | 304 | 0 | 0 | 1 | 304 | 1 | 304 | 0.0 | 640 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0396520 | sp|Q10L91|DIS1_ORYSJ | 83.113 | 302 | 49 | 2 | 3 | 304 | 2 | 301 | 0.0 | 530 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0396520 | A8W462 | 100.000 | 304 | 0 | 0 | 1 | 304 | 1 | 304 | 0.0 | 640 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0209140 | Msa0396520 | 0.811209 | 7.848314e-51 | -8.615850e-47 |
| Msa0396520 | Msa1207330 | 0.827121 | 1.863681e-54 | -8.615850e-47 |
| Msa0396520 | Msa1331300 | 0.832441 | 9.438401e-56 | -8.615850e-47 |
| Msa0288620 | Msa0396520 | 0.801566 | 8.475031e-49 | -8.615850e-47 |
| Msa0349720 | Msa0396520 | 0.947728 | 3.819709e-106 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0396520 | MtrunA17_Chr3g0083571 | 100.000 | 304 | 0 | 0 | 1 | 304 | 1 | 304 | 0.0 | 640 |
| Msa0396520 | MtrunA17_Chr8g0352701 | 84.539 | 304 | 47 | 0 | 1 | 304 | 1 | 304 | 0.0 | 556 |
| Msa0396520 | MtrunA17_Chr3g0126851 | 79.630 | 270 | 54 | 1 | 36 | 304 | 42 | 311 | 4.12e-169 | 471 |
| Msa0396520 | MtrunA17_Chr1g0147041 | 83.333 | 258 | 43 | 0 | 47 | 304 | 62 | 319 | 2.12e-168 | 470 |
| Msa0396520 | MtrunA17_Chr8g0346801 | 77.256 | 277 | 62 | 1 | 29 | 304 | 19 | 295 | 7.76e-165 | 460 |
| Msa0396520 | MtrunA17_Chr7g0275701 | 79.008 | 262 | 55 | 0 | 43 | 304 | 51 | 312 | 2.02e-162 | 454 |
| Msa0396520 | MtrunA17_Chr7g0258941 | 73.704 | 270 | 67 | 1 | 38 | 303 | 40 | 309 | 3.56e-153 | 431 |
| Msa0396520 | MtrunA17_Chr1g0175721 | 74.525 | 263 | 66 | 1 | 43 | 304 | 47 | 309 | 2.61e-152 | 428 |
| Msa0396520 | MtrunA17_Chr7g0223111 | 26.147 | 218 | 149 | 5 | 45 | 262 | 31 | 236 | 7.14e-22 | 94.0 |
| Msa0396520 | MtrunA17_Chr5g0433631 | 26.778 | 239 | 159 | 5 | 23 | 261 | 9 | 231 | 1.84e-21 | 92.8 |
| Msa0396520 | MtrunA17_Chr5g0428191 | 25.822 | 213 | 142 | 5 | 53 | 262 | 11 | 210 | 3.90e-19 | 85.9 |
| Msa0396520 | MtrunA17_Chr5g0433661 | 26.860 | 242 | 149 | 8 | 30 | 262 | 22 | 244 | 1.18e-18 | 85.1 |
| Msa0396520 | MtrunA17_Chr4g0051351 | 32.479 | 117 | 77 | 1 | 52 | 168 | 96 | 210 | 4.60e-18 | 83.2 |
| Msa0396520 | MtrunA17_Chr5g0433531 | 32.402 | 179 | 105 | 5 | 46 | 219 | 4 | 171 | 5.31e-18 | 82.8 |
| Msa0396520 | MtrunA17_Chr5g0424971 | 30.405 | 148 | 95 | 5 | 41 | 185 | 4 | 146 | 1.34e-17 | 81.6 |
| Msa0396520 | MtrunA17_Chr5g0433541 | 27.907 | 215 | 135 | 6 | 52 | 261 | 10 | 209 | 2.29e-17 | 79.7 |
| Msa0396520 | MtrunA17_Chr5g0433551 | 27.907 | 215 | 135 | 6 | 52 | 261 | 10 | 209 | 2.29e-17 | 79.7 |
| Msa0396520 | MtrunA17_Chr5g0433411 | 25.000 | 244 | 166 | 7 | 54 | 296 | 34 | 261 | 4.12e-17 | 80.5 |
| Msa0396520 | MtrunA17_Chr7g0259431 | 36.000 | 100 | 62 | 1 | 69 | 168 | 9 | 106 | 3.47e-16 | 77.4 |
| Msa0396520 | MtrunA17_Chr2g0298951 | 31.858 | 113 | 72 | 2 | 69 | 178 | 9 | 119 | 5.12e-15 | 74.3 |
| Msa0396520 | MtrunA17_Chr1g0169381 | 31.897 | 116 | 76 | 2 | 53 | 168 | 11 | 123 | 7.06e-15 | 70.9 |
| Msa0396520 | MtrunA17_Chr5g0433731 | 26.887 | 212 | 125 | 10 | 60 | 262 | 1 | 191 | 6.49e-14 | 70.5 |
| Msa0396520 | MtrunA17_Chr5g0433521 | 28.205 | 156 | 96 | 5 | 69 | 219 | 23 | 167 | 1.59e-12 | 67.0 |
| Msa0396520 | MtrunA17_Chr1g0169371 | 23.000 | 200 | 129 | 7 | 70 | 262 | 3 | 184 | 7.66e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0396520 | AT3G61790.1 | 82.239 | 259 | 46 | 0 | 46 | 304 | 53 | 311 | 1.44e-166 | 466 |
| Msa0396520 | AT4G27880.1 | 79.775 | 267 | 53 | 1 | 39 | 304 | 46 | 312 | 7.30e-165 | 461 |
| Msa0396520 | AT3G58040.1 | 79.070 | 258 | 54 | 0 | 47 | 304 | 51 | 308 | 4.05e-159 | 446 |
| Msa0396520 | AT3G58040.3 | 79.070 | 258 | 54 | 0 | 47 | 304 | 51 | 308 | 4.05e-159 | 446 |
| Msa0396520 | AT2G41980.1 | 78.295 | 258 | 56 | 0 | 47 | 304 | 48 | 305 | 2.34e-158 | 444 |
| Msa0396520 | AT5G53360.1 | 85.784 | 204 | 29 | 0 | 101 | 304 | 15 | 218 | 9.12e-136 | 384 |
| Msa0396520 | AT5G53360.3 | 85.784 | 204 | 29 | 0 | 101 | 304 | 15 | 218 | 9.12e-136 | 384 |
| Msa0396520 | AT3G58040.2 | 73.964 | 169 | 38 | 1 | 47 | 209 | 51 | 219 | 4.40e-88 | 263 |
| Msa0396520 | AT3G13672.1 | 58.333 | 168 | 67 | 1 | 140 | 304 | 45 | 212 | 1.84e-73 | 225 |
| Msa0396520 | AT3G13672.2 | 50.769 | 195 | 66 | 2 | 140 | 304 | 45 | 239 | 9.01e-68 | 212 |
| Msa0396520 | AT5G53360.2 | 87.736 | 106 | 13 | 0 | 199 | 304 | 60 | 165 | 1.64e-66 | 206 |
| Msa0396520 | AT5G37870.1 | 28.251 | 223 | 150 | 5 | 52 | 271 | 41 | 256 | 7.68e-24 | 98.6 |
| Msa0396520 | AT5G37890.1 | 26.908 | 249 | 163 | 7 | 52 | 296 | 47 | 280 | 1.13e-22 | 95.5 |
| Msa0396520 | AT5G37930.1 | 36.585 | 123 | 76 | 1 | 52 | 174 | 109 | 229 | 8.68e-22 | 94.4 |
| Msa0396520 | AT5G37910.1 | 35.537 | 121 | 76 | 1 | 52 | 172 | 34 | 152 | 8.71e-21 | 90.1 |
| Msa0396520 | AT5G62800.2 | 28.163 | 245 | 144 | 8 | 43 | 271 | 28 | 256 | 8.34e-20 | 88.2 |
| Msa0396520 | AT5G62800.1 | 28.163 | 245 | 144 | 8 | 43 | 271 | 28 | 256 | 1.28e-19 | 88.2 |
| Msa0396520 | AT1G66650.1 | 35.556 | 135 | 77 | 3 | 37 | 170 | 74 | 199 | 1.97e-19 | 87.4 |
| Msa0396520 | AT1G66660.2 | 37.500 | 112 | 68 | 1 | 52 | 163 | 102 | 211 | 3.72e-17 | 81.3 |
| Msa0396520 | AT1G66620.1 | 34.188 | 117 | 75 | 1 | 52 | 168 | 40 | 154 | 5.43e-17 | 80.1 |
| Msa0396520 | AT1G66630.1 | 36.066 | 122 | 74 | 2 | 52 | 171 | 45 | 164 | 2.79e-16 | 78.2 |
| Msa0396520 | AT1G66610.2 | 44.156 | 77 | 41 | 1 | 39 | 115 | 146 | 220 | 5.43e-14 | 70.5 |
Find 88 sgRNAs with CRISPR-Local
Find 255 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACTTTGTGATCATCTTTC+AGG | 0.107653 | 3_2:-15052312 | None:intergenic |
| TATATTCTGCATTGTGATTT+AGG | 0.136659 | 3_2:+15053346 | Msa0396520:three_prime_UTR |
| CCTTGTAAATATCAAGGTTT+TGG | 0.179238 | 3_2:+15052160 | Msa0396520:CDS |
| GCCATATTTGGCACACATTA+AGG | 0.227588 | 3_2:-15053442 | None:intergenic |
| AAGTAGAAATGATGAGAAAT+AGG | 0.232134 | 3_2:-15049634 | None:intergenic |
| TTGATCAAAACCATCATTTC+AGG | 0.232347 | 3_2:+15049678 | Msa0396520:five_prime_UTR |
| ATCCTTTCTTTGATGATATA+CGG | 0.258381 | 3_2:+15051102 | Msa0396520:CDS |
| TGGCTTTCCCTAATGCTTCT+AGG | 0.260871 | 3_2:-15053078 | None:intergenic |
| GCCAGCGTATGGACAGTTAT+AGG | 0.313869 | 3_2:-15052245 | None:intergenic |
| CAGACTGTTGTTAAACCTAA+TGG | 0.317142 | 3_2:+15051197 | Msa0396520:CDS |
| AGTCTTGAGGTAGGTGGAAA+TGG | 0.332194 | 3_2:+15053030 | Msa0396520:CDS |
| TACGAGTTACCGGAAGGATT+TGG | 0.352091 | 3_2:+15053190 | Msa0396520:CDS |
| ATAGGATCATTTACGAGTTC+AGG | 0.352374 | 3_2:-15051173 | None:intergenic |
| AGGGAGTGCCTAGAAGCATT+AGG | 0.370736 | 3_2:+15053070 | Msa0396520:CDS |
| CTACTTCATTCTCTCTTCAA+TGG | 0.376657 | 3_2:+15049651 | Msa0396520:five_prime_UTR |
| CTGCTTGAAACAGTCCCATT+AGG | 0.388735 | 3_2:-15051212 | None:intergenic |
| CTGCTCTTTCCAAATCCTTC+CGG | 0.395229 | 3_2:-15053199 | None:intergenic |
| CGTCGGTGATGTACAATTCT+TGG | 0.396672 | 3_2:+15052282 | Msa0396520:CDS |
| CCAGCGTATGGACAGTTATA+GGG | 0.402731 | 3_2:-15052244 | None:intergenic |
| GGTTTAACAACAGTCTGTAT+AGG | 0.402918 | 3_2:-15051191 | None:intergenic |
| GAACTTCCTTGTAAATATCA+AGG | 0.422080 | 3_2:+15052154 | Msa0396520:CDS |
| AGACTGTTGTTAAACCTAAT+GGG | 0.431620 | 3_2:+15051198 | Msa0396520:CDS |
| TCTTTGTTGCAGTGCTCAAA+TGG | 0.438664 | 3_2:+15052019 | Msa0396520:intron |
| GAATTGAAACTACGAGTTAC+CGG | 0.441197 | 3_2:+15053180 | Msa0396520:CDS |
| TTTCATCAAAATATATGGTC+AGG | 0.446830 | 3_2:+15053391 | Msa0396520:three_prime_UTR |
| TTGCAGACGCGCACAAATGA+AGG | 0.448090 | 3_2:+15049524 | Msa0396520:five_prime_UTR |
| TGTTAGTGGTATGAATCATC+TGG | 0.448409 | 3_2:+15053319 | Msa0396520:three_prime_UTR |
| TCTGTTGACTCTTCAGTTTG+AGG | 0.451697 | 3_2:-15051146 | None:intergenic |
| ATGACCGGTGCCCTACTTGT+AGG | 0.452100 | 3_2:+15052077 | Msa0396520:CDS |
| GGGAGTGCCTAGAAGCATTA+GGG | 0.471441 | 3_2:+15053071 | Msa0396520:CDS |
| AATGGTCACACTTTATGCTC+TGG | 0.475297 | 3_2:+15052037 | Msa0396520:CDS |
| CCAAAACCTTGATATTTACA+AGG | 0.480693 | 3_2:-15052160 | None:intergenic |
| TACAAGTAGGGCACCGGTCA+TGG | 0.488202 | 3_2:-15052075 | None:intergenic |
| AGTAGAAATGATGAGAAATA+GGG | 0.488467 | 3_2:-15049633 | None:intergenic |
| CATTTGTGCGCGTCTGCAAG+TGG | 0.490569 | 3_2:-15049520 | None:intergenic |
| AAATGCCACGTGGATGTTAA+CGG | 0.491591 | 3_2:+15052396 | Msa0396520:CDS |
| GCTCGGCAATATTAGATGTC+TGG | 0.494495 | 3_2:+15052105 | Msa0396520:CDS |
| AATAATGTTTAGATGAAGAA+AGG | 0.496248 | 3_2:-15053235 | None:intergenic |
| TGGGAGGAAGATGACATGGC+AGG | 0.496612 | 3_2:+15053050 | Msa0396520:CDS |
| GTCTTGAGGTAGGTGGAAAT+GGG | 0.502924 | 3_2:+15053031 | Msa0396520:CDS |
| GGGCACCGGTCATGGACTCT+TGG | 0.507747 | 3_2:-15052067 | None:intergenic |
| GATGATATACGGAGCAGACC+TGG | 0.512497 | 3_2:+15051113 | Msa0396520:CDS |
| CTCCGTATATCATCAAAGAA+AGG | 0.512924 | 3_2:-15051104 | None:intergenic |
| GTTGACTCTTCAGTTTGAGG+AGG | 0.520191 | 3_2:-15051143 | None:intergenic |
| CGGTGATGTACAATTCTTGG+TGG | 0.525654 | 3_2:+15052285 | Msa0396520:CDS |
| GTTGAAAAGCTTCAAAATGC+AGG | 0.526970 | 3_2:-15052933 | None:intergenic |
| CGAGCTCATGCCTACAAGTA+GGG | 0.527877 | 3_2:-15052087 | None:intergenic |
| ACGAAGGGGCTGCTGATCGT+TGG | 0.529410 | 3_2:+15051056 | Msa0396520:intron |
| CAATTCCTTCCTATCACCCC+CGG | 0.530867 | 3_2:-15053163 | None:intergenic |
| CCGAGCTCATGCCTACAAGT+AGG | 0.541442 | 3_2:-15052088 | None:intergenic |
| CAATATTAGATGTCTGGCAT+TGG | 0.542091 | 3_2:+15052111 | Msa0396520:CDS |
| AAAACAACCTGGTGGATTGG+AGG | 0.544752 | 3_2:-15051281 | None:intergenic |
| ATGATATACGGAGCAGACCT+GGG | 0.547918 | 3_2:+15051114 | Msa0396520:CDS |
| GCACATTCTGAGCCAGCGTA+TGG | 0.548394 | 3_2:-15052256 | None:intergenic |
| GGCTCAGAATGTGCTGTCGT+CGG | 0.549909 | 3_2:+15052265 | Msa0396520:CDS |
| AAACAACCTGGTGGATTGGA+GGG | 0.552550 | 3_2:-15051280 | None:intergenic |
| TAGATGTCTGGCATTGGAGA+AGG | 0.574141 | 3_2:+15052117 | Msa0396520:CDS |
| ATTCTGCATTGTGATTTAGG+AGG | 0.574981 | 3_2:+15053349 | Msa0396520:three_prime_UTR |
| ATCAAAATATATGGTCAGGA+AGG | 0.576115 | 3_2:+15053395 | Msa0396520:three_prime_UTR |
| GTTTGAGGAGGATCAACCCC+AGG | 0.578379 | 3_2:-15051131 | None:intergenic |
| TTGAGGTAGGTGGAAATGGG+AGG | 0.580688 | 3_2:+15053034 | Msa0396520:CDS |
| GGGAGGAAGATGACATGGCA+GGG | 0.581927 | 3_2:+15053051 | Msa0396520:CDS |
| CTATGTCAAATCAAATCCAC+AGG | 0.591513 | 3_2:+15052366 | Msa0396520:CDS |
| TTGACGGTCTCATCATTCAG+AGG | 0.602337 | 3_2:+15053121 | Msa0396520:CDS |
| GCAAACCAAGAGTCCATGAC+CGG | 0.602981 | 3_2:+15052062 | Msa0396520:CDS |
| CATGCCTACAAGTAGGGCAC+CGG | 0.605884 | 3_2:-15052081 | None:intergenic |
| TACATAGCATTCAAGCACAC+AGG | 0.610121 | 3_2:-15051257 | None:intergenic |
| ACCTACAGTCTTGAGGTAGG+TGG | 0.614102 | 3_2:+15053024 | Msa0396520:CDS |
| AACTGTCACGAACCTTGCGG+TGG | 0.618648 | 3_2:-15053098 | None:intergenic |
| TGCAGACGCGCACAAATGAA+GGG | 0.624483 | 3_2:+15049525 | Msa0396520:five_prime_UTR |
| CCCTATAACTGTCCATACGC+TGG | 0.625668 | 3_2:+15052244 | Msa0396520:CDS |
| GAACTATACCTACAGTCTTG+AGG | 0.625891 | 3_2:+15053017 | Msa0396520:CDS |
| CACAAAGTTGACATGCATAG+TGG | 0.627122 | 3_2:+15052325 | Msa0396520:CDS |
| TATGTACCCTCCAATCCACC+AGG | 0.632101 | 3_2:+15051274 | Msa0396520:CDS |
| ATGTCTGGCATTGGAGAAGG+TGG | 0.632129 | 3_2:+15052120 | Msa0396520:CDS |
| CATTAGGGAAAGCCACCGCA+AGG | 0.634165 | 3_2:+15053086 | Msa0396520:CDS |
| GAAATGGGAGGAAGATGACA+TGG | 0.639042 | 3_2:+15053046 | Msa0396520:CDS |
| AGAAATGATGAGAAATAGGG+TGG | 0.639232 | 3_2:-15049630 | None:intergenic |
| ACATAGCATTCAAGCACACA+GGG | 0.641099 | 3_2:-15051256 | None:intergenic |
| TCTCATCATTCAGAGGAACA+TGG | 0.653246 | 3_2:+15053128 | Msa0396520:CDS |
| TGAAACTACGAGTTACCGGA+AGG | 0.656079 | 3_2:+15053184 | Msa0396520:CDS |
| CCTACTTGTAGGCATGAGCT+CGG | 0.657939 | 3_2:+15052088 | Msa0396520:CDS |
| TATACCTACAGTCTTGAGGT+AGG | 0.664992 | 3_2:+15053021 | Msa0396520:CDS |
| TCCACCTACCTCAAGACTGT+AGG | 0.671872 | 3_2:-15053025 | None:intergenic |
| TGATATACGGAGCAGACCTG+GGG | 0.690514 | 3_2:+15051115 | Msa0396520:CDS |
| CAAAACTGTCACGAACCTTG+CGG | 0.727655 | 3_2:-15053101 | None:intergenic |
| AGGAAGTTGAAAATGCCACG+TGG | 0.762196 | 3_2:+15052386 | Msa0396520:CDS |
| GAATACCGTTAACATCCACG+TGG | 0.817117 | 3_2:-15052401 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAATAAGAAAATAAGT+TGG | - | chr3_2:15049737-15049756 | None:intergenic | 10.0% |
| !!! | TTTTATTTTTTTGCATTTTA+AGG | + | chr3_2:15049994-15050013 | Msa0396520:intron | 10.0% |
| !!! | TTTATTTTTTTGCATTTTAA+GGG | + | chr3_2:15049995-15050014 | Msa0396520:intron | 10.0% |
| !! | ATTAATTAGTATTTGAATTA+AGG | + | chr3_2:15050842-15050861 | Msa0396520:intron | 10.0% |
| !! | CATTTAAAAAAAAATTCATA+CGG | - | chr3_2:15050999-15051018 | None:intergenic | 10.0% |
| !!! | ATTTTTTTTTAAATGATGAT+TGG | + | chr3_2:15051004-15051023 | Msa0396520:intron | 10.0% |
| !! | TTATATAAATCAAAATAGAA+GGG | - | chr3_2:15051559-15051578 | None:intergenic | 10.0% |
| !! | TTTATATAAATCAAAATAGA+AGG | - | chr3_2:15051560-15051579 | None:intergenic | 10.0% |
| !! | TCAAAATAAACAAAAAATGT+TGG | - | chr3_2:15049877-15049896 | None:intergenic | 15.0% |
| !! | TATATAAATCAAAATAGAAG+GGG | - | chr3_2:15051558-15051577 | None:intergenic | 15.0% |
| !! | TAATGAATTCACAAATTTAT+AGG | - | chr3_2:15051980-15051999 | None:intergenic | 15.0% |
| !!! | TTACTTTTCATCAAAATATA+TGG | + | chr3_2:15053386-15053405 | Msa0396520:three_prime_UTR | 15.0% |
| !! | ATAAAAAATACCTGAAATGA+TGG | - | chr3_2:15049691-15049710 | None:intergenic | 20.0% |
| !!! | TTTTACTTGTTTTTGTTTCT+GGG | + | chr3_2:15049762-15049781 | Msa0396520:intron | 20.0% |
| !!! | CAATGCTTAAAATAACTTTT+TGG | + | chr3_2:15050220-15050239 | Msa0396520:intron | 20.0% |
| !! | ATAATCAAACAAATGAATGA+AGG | - | chr3_2:15050568-15050587 | None:intergenic | 20.0% |
| !!! | TGATCATTTTATCTTATGTT+AGG | + | chr3_2:15050813-15050832 | Msa0396520:intron | 20.0% |
| !! | AATATACAATGCTGTAAAAA+TGG | + | chr3_2:15050959-15050978 | Msa0396520:intron | 20.0% |
| !!! | TTTTTTTTTTTCATTCACGA+AGG | + | chr3_2:15051040-15051059 | Msa0396520:intron | 20.0% |
| !!! | TTTTTTTTTTCATTCACGAA+GGG | + | chr3_2:15051041-15051060 | Msa0396520:intron | 20.0% |
| !! | TATTTGTAGCTAATCTAAAT+AGG | + | chr3_2:15051826-15051845 | Msa0396520:intron | 20.0% |
| !! | ACACTTTCAATATAAAATGT+CGG | - | chr3_2:15052536-15052555 | None:intergenic | 20.0% |
| !!! | AAGAAATCATATTTTAGTAG+TGG | + | chr3_2:15052755-15052774 | Msa0396520:intron | 20.0% |
| !! | AATAATGTTTAGATGAAGAA+AGG | - | chr3_2:15053238-15053257 | None:intergenic | 20.0% |
| ! | AGTAGAAATGATGAGAAATA+GGG | - | chr3_2:15049636-15049655 | None:intergenic | 25.0% |
| ! | AAGTAGAAATGATGAGAAAT+AGG | - | chr3_2:15049637-15049656 | None:intergenic | 25.0% |
| !!! | GTTTTACTTGTTTTTGTTTC+TGG | + | chr3_2:15049761-15049780 | Msa0396520:intron | 25.0% |
| !! | TAACCAATGTTTTCATTGTT+GGG | + | chr3_2:15049804-15049823 | Msa0396520:intron | 25.0% |
| !!! | TTTGACTTGTTTTTGTTTCT+GGG | + | chr3_2:15049899-15049918 | Msa0396520:intron | 25.0% |
| !! | TCATGAATGTTTTCATTGAT+GGG | + | chr3_2:15049941-15049960 | Msa0396520:intron | 25.0% |
| !!! | ATTTTTTTGCATTTTAAGGG+TGG | + | chr3_2:15049998-15050017 | Msa0396520:intron | 25.0% |
| !! | TTAAGGTTAGGATTTTTGAA+TGG | + | chr3_2:15050063-15050082 | Msa0396520:intron | 25.0% |
| ! | TTTGGATTATTATGCATTTG+TGG | + | chr3_2:15050148-15050167 | Msa0396520:intron | 25.0% |
| ! | AGTATTAAAATTGAGTAACC+AGG | - | chr3_2:15050376-15050395 | None:intergenic | 25.0% |
| !!! | TTTTATGTCTTGCTAGTTTA+TGG | + | chr3_2:15050526-15050545 | Msa0396520:intron | 25.0% |
| ! | ACTAACTTCAAGTATTCAAA+TGG | - | chr3_2:15050657-15050676 | None:intergenic | 25.0% |
| !! | TGATTTTATTCATCAGATCA+TGG | + | chr3_2:15050725-15050744 | Msa0396520:intron | 25.0% |
| ! | AATGATCAACATTTCAACAA+TGG | - | chr3_2:15050801-15050820 | None:intergenic | 25.0% |
| !! | TCATTTTATCTTATGTTAGG+TGG | + | chr3_2:15050816-15050835 | Msa0396520:intron | 25.0% |
| ! | GAATTAAGGTTATCTTATGA+TGG | + | chr3_2:15050856-15050875 | Msa0396520:intron | 25.0% |
| !!! | TGTTTGGTGATTACTTTTTA+GGG | + | chr3_2:15050900-15050919 | Msa0396520:intron | 25.0% |
| !!! | TTTTTTTTTCATTCACGAAG+GGG | + | chr3_2:15051042-15051061 | Msa0396520:intron | 25.0% |
| !! | ATCCTTTCTTTGATGATATA+CGG | + | chr3_2:15051102-15051121 | Msa0396520:CDS | 25.0% |
| !!! | TTTTAACTAGTGTTGTCAAA+TGG | + | chr3_2:15051377-15051396 | Msa0396520:intron | 25.0% |
| !!! | ACTAACTGCTATTTTTTTTG+CGG | + | chr3_2:15051505-15051524 | Msa0396520:intron | 25.0% |
| ! | AACATGAAACATAAATTCAG+GGG | - | chr3_2:15051595-15051614 | None:intergenic | 25.0% |
| ! | GAACATGAAACATAAATTCA+GGG | - | chr3_2:15051596-15051615 | None:intergenic | 25.0% |
| ! | AGAACATGAAACATAAATTC+AGG | - | chr3_2:15051597-15051616 | None:intergenic | 25.0% |
| ! | ATCTCTAATTAAGAAAGCAA+GGG | - | chr3_2:15051628-15051647 | None:intergenic | 25.0% |
| ! | AATCTCTAATTAAGAAAGCA+AGG | - | chr3_2:15051629-15051648 | None:intergenic | 25.0% |
| ! | TGAAAAAAAAGAAACTCATC+AGG | + | chr3_2:15051695-15051714 | Msa0396520:intron | 25.0% |
| !! | ACACTTACTATACTTACTTT+TGG | + | chr3_2:15051740-15051759 | Msa0396520:intron | 25.0% |
| ! | ATTTGTCAATGATGTAGTTA+TGG | + | chr3_2:15051869-15051888 | Msa0396520:intron | 25.0% |
| !! | CTTGTAAATATCAAGGTTTT+GGG | + | chr3_2:15052161-15052180 | Msa0396520:CDS | 25.0% |
| ! | ACTTTGCAAATTAACTAAAC+TGG | + | chr3_2:15052458-15052477 | Msa0396520:intron | 25.0% |
| !!! | TGTTATTTTTGTCATGCTTA+TGG | + | chr3_2:15052491-15052510 | Msa0396520:intron | 25.0% |
| !!! | TTTTATATTGAAAGTGTGTC+TGG | + | chr3_2:15052539-15052558 | Msa0396520:intron | 25.0% |
| ! | GAAAAGCAGAAAAAATTACA+GGG | - | chr3_2:15052716-15052735 | None:intergenic | 25.0% |
| ! | TATATTCTGCATTGTGATTT+AGG | + | chr3_2:15053346-15053365 | Msa0396520:three_prime_UTR | 25.0% |
| ! | TTTCATCAAAATATATGGTC+AGG | + | chr3_2:15053391-15053410 | Msa0396520:three_prime_UTR | 25.0% |
| TTGATCAAAACCATCATTTC+AGG | + | chr3_2:15049678-15049697 | Msa0396520:five_prime_UTR | 30.0% | |
| ! | CAACAATGAAAACATTGGTT+AGG | - | chr3_2:15049805-15049824 | None:intergenic | 30.0% |
| ! | CTAACCAATGTTTTCATTGT+TGG | + | chr3_2:15049803-15049822 | Msa0396520:intron | 30.0% |
| ! | AACCAATGTTTTCATTGTTG+GGG | + | chr3_2:15049805-15049824 | Msa0396520:intron | 30.0% |
| !!! | GTTTGACTTGTTTTTGTTTC+TGG | + | chr3_2:15049898-15049917 | Msa0396520:intron | 30.0% |
| CAATGAAAACATTCATGAGA+GGG | - | chr3_2:15049939-15049958 | None:intergenic | 30.0% | |
| TCAATGAAAACATTCATGAG+AGG | - | chr3_2:15049940-15049959 | None:intergenic | 30.0% | |
| ! | CTCATGAATGTTTTCATTGA+TGG | + | chr3_2:15049940-15049959 | Msa0396520:intron | 30.0% |
| AAAATCTGCATACCATTTGA+GGG | - | chr3_2:15050109-15050128 | None:intergenic | 30.0% | |
| AAAAATCTGCATACCATTTG+AGG | - | chr3_2:15050110-15050129 | None:intergenic | 30.0% | |
| !!! | TTACTCGATGTTTTAAAACC+CGG | + | chr3_2:15050330-15050349 | Msa0396520:intron | 30.0% |
| !!! | TTTTAAAACCCGGTTTGAAT+CGG | + | chr3_2:15050340-15050359 | Msa0396520:intron | 30.0% |
| AACTTCAAGTATTCAAATGG+TGG | - | chr3_2:15050654-15050673 | None:intergenic | 30.0% | |
| !! | TACTTGAAGTTAGTTTGTGT+AGG | + | chr3_2:15050663-15050682 | Msa0396520:intron | 30.0% |
| !!! | GTGTTTGGTGATTACTTTTT+AGG | + | chr3_2:15050899-15050918 | Msa0396520:intron | 30.0% |
| ! | AGCCTATTGCTAATTGTTTT+TGG | + | chr3_2:15050931-15050950 | Msa0396520:intron | 30.0% |
| TGCCAAAAACAATTAGCAAT+AGG | - | chr3_2:15050936-15050955 | None:intergenic | 30.0% | |
| AGACTGTTGTTAAACCTAAT+GGG | + | chr3_2:15051198-15051217 | Msa0396520:CDS | 30.0% | |
| TCTCTAATTAAGAAAGCAAG+GGG | - | chr3_2:15051627-15051646 | None:intergenic | 30.0% | |
| AGTAAGTATAGTAAGTGTCA+TGG | - | chr3_2:15051738-15051757 | None:intergenic | 30.0% | |
| ATGATGTAGTTATGGTTCAA+AGG | + | chr3_2:15051877-15051896 | Msa0396520:intron | 30.0% | |
| ! | TAATTTTCCAACATGTCATG+TGG | + | chr3_2:15051900-15051919 | Msa0396520:intron | 30.0% |
| GAACTTCCTTGTAAATATCA+AGG | + | chr3_2:15052154-15052173 | Msa0396520:CDS | 30.0% | |
| CCAAAACCTTGATATTTACA+AGG | - | chr3_2:15052163-15052182 | None:intergenic | 30.0% | |
| ! | CCTTGTAAATATCAAGGTTT+TGG | + | chr3_2:15052160-15052179 | Msa0396520:CDS | 30.0% |
| !!! | GTTTTAGCTTGCTGTAATAT+GGG | - | chr3_2:15052201-15052220 | None:intergenic | 30.0% |
| !!! | TGTTTTAGCTTGCTGTAATA+TGG | - | chr3_2:15052202-15052221 | None:intergenic | 30.0% |
| TTGCAAAGTCAATAAAATGC+AGG | - | chr3_2:15052447-15052466 | None:intergenic | 30.0% | |
| TTGCAAATTAACTAAACTGG+TGG | + | chr3_2:15052461-15052480 | Msa0396520:intron | 30.0% | |
| GGAAAAGCAGAAAAAATTAC+AGG | - | chr3_2:15052717-15052736 | None:intergenic | 30.0% | |
| !! | CTTTTCTTGTTTAAGCTAGA+AGG | - | chr3_2:15052738-15052757 | None:intergenic | 30.0% |
| AACTTATAACCTTGTCTTTG+TGG | + | chr3_2:15052818-15052837 | Msa0396520:intron | 30.0% | |
| AAATCTATACCACAAAGACA+AGG | - | chr3_2:15052830-15052849 | None:intergenic | 30.0% | |
| !!! | TTCTAGGTTTTTAGTTGCTT+CGG | + | chr3_2:15052898-15052917 | Msa0396520:intron | 30.0% |
| !!! | CATTTTGAAGCTTTTCAACT+GGG | + | chr3_2:15052937-15052956 | Msa0396520:CDS | 30.0% |
| ! | ATAGCATTTTTGCGGTTTAT+GGG | + | chr3_2:15052976-15052995 | Msa0396520:CDS | 30.0% |
| ! | GTGCAAGTATTTTATGTTAG+TGG | + | chr3_2:15053305-15053324 | Msa0396520:three_prime_UTR | 30.0% |
| ATCAAAATATATGGTCAGGA+AGG | + | chr3_2:15053395-15053414 | Msa0396520:three_prime_UTR | 30.0% | |
| AGAAATGATGAGAAATAGGG+TGG | - | chr3_2:15049633-15049652 | None:intergenic | 35.0% | |
| CTACTTCATTCTCTCTTCAA+TGG | + | chr3_2:15049651-15049670 | Msa0396520:five_prime_UTR | 35.0% | |
| !!! | AGATCTGCTTGCTGTTTTTA+AGG | + | chr3_2:15050046-15050065 | Msa0396520:intron | 35.0% |
| !!! | TGCTTGCTGTTTTTAAGGTT+AGG | + | chr3_2:15050051-15050070 | Msa0396520:intron | 35.0% |
| !! | GTTTGTTGTAAACCCTCAAA+TGG | + | chr3_2:15050094-15050113 | Msa0396520:intron | 35.0% |
| ! | CTAGTGAATAACGTGTGTTT+TGG | + | chr3_2:15050130-15050149 | Msa0396520:intron | 35.0% |
| !! | ACTTTTTGGTGTGATTTGTG+TGG | + | chr3_2:15050234-15050253 | Msa0396520:intron | 35.0% |
| ATTGCCAATCTCTTACAACT+TGG | - | chr3_2:15050307-15050326 | None:intergenic | 35.0% | |
| !!! | TGGTGTGGTTTTTAAAGCAT+TGG | + | chr3_2:15050482-15050501 | Msa0396520:intron | 35.0% |
| TTGTCAAACTAACAAGACTG+TGG | + | chr3_2:15050598-15050617 | Msa0396520:intron | 35.0% | |
| ATTCATACGGTTCAGTTTCA+TGG | - | chr3_2:15050986-15051005 | None:intergenic | 35.0% | |
| CTCCGTATATCATCAAAGAA+AGG | - | chr3_2:15051107-15051126 | None:intergenic | 35.0% | |
| ATAGGATCATTTACGAGTTC+AGG | - | chr3_2:15051176-15051195 | None:intergenic | 35.0% | |
| GGTTTAACAACAGTCTGTAT+AGG | - | chr3_2:15051194-15051213 | None:intergenic | 35.0% | |
| CAGACTGTTGTTAAACCTAA+TGG | + | chr3_2:15051197-15051216 | Msa0396520:CDS | 35.0% | |
| ATCAATGAAAAACAACCTGG+TGG | - | chr3_2:15051292-15051311 | None:intergenic | 35.0% | |
| !! | ATCGCTCATTGTTGATTTGT+GGG | + | chr3_2:15051310-15051329 | Msa0396520:intron | 35.0% |
| ! | TTCGCTAGTGTTTTGCAATA+CGG | + | chr3_2:15051420-15051439 | Msa0396520:intron | 35.0% |
| AGTATAGTAAGTGTCATGGT+TGG | - | chr3_2:15051734-15051753 | None:intergenic | 35.0% | |
| CAATATTAGATGTCTGGCAT+TGG | + | chr3_2:15052111-15052130 | Msa0396520:CDS | 35.0% | |
| CAACTTTGTGATCATCTTTC+AGG | - | chr3_2:15052315-15052334 | None:intergenic | 35.0% | |
| CTATGTCAAATCAAATCCAC+AGG | + | chr3_2:15052366-15052385 | Msa0396520:CDS | 35.0% | |
| TCAGTAACCAGTATCAGATA+CGG | - | chr3_2:15052579-15052598 | None:intergenic | 35.0% | |
| GTTGAAAAGCTTCAAAATGC+AGG | - | chr3_2:15052936-15052955 | None:intergenic | 35.0% | |
| !!! | GCATTTTGAAGCTTTTCAAC+TGG | + | chr3_2:15052936-15052955 | Msa0396520:CDS | 35.0% |
| ! | CTGTCTACATAGCATTTTTG+CGG | + | chr3_2:15052968-15052987 | Msa0396520:CDS | 35.0% |
| ! | CATAGCATTTTTGCGGTTTA+TGG | + | chr3_2:15052975-15052994 | Msa0396520:CDS | 35.0% |
| GAATTGAAACTACGAGTTAC+CGG | + | chr3_2:15053180-15053199 | Msa0396520:CDS | 35.0% | |
| TGTTAGTGGTATGAATCATC+TGG | + | chr3_2:15053319-15053338 | Msa0396520:three_prime_UTR | 35.0% | |
| ATTCTGCATTGTGATTTAGG+AGG | + | chr3_2:15053349-15053368 | Msa0396520:three_prime_UTR | 35.0% | |
| CACCCCAACAATGAAAACAT+TGG | - | chr3_2:15049810-15049829 | None:intergenic | 40.0% | |
| !! | TGCATTTTAAGGGTGGTGTT+TGG | + | chr3_2:15050005-15050024 | Msa0396520:intron | 40.0% |
| !! | TGTTTGGTTTGTGTGTGTTG+TGG | + | chr3_2:15050021-15050040 | Msa0396520:intron | 40.0% |
| !! | GTTTGGTTTGTGTGTGTTGT+GGG | + | chr3_2:15050022-15050041 | Msa0396520:intron | 40.0% |
| ! | TTTGGTGTGATTTGTGTGGA+TGG | + | chr3_2:15050238-15050257 | Msa0396520:intron | 40.0% |
| GCTTGAAAATGTCGTATGGA+TGG | - | chr3_2:15050272-15050291 | None:intergenic | 40.0% | |
| !! | TCCATACGACATTTTCAAGC+TGG | + | chr3_2:15050272-15050291 | Msa0396520:intron | 40.0% |
| !! | CCATACGACATTTTCAAGCT+GGG | + | chr3_2:15050273-15050292 | Msa0396520:intron | 40.0% |
| ! | TCAAACCAACCGATTCAAAC+CGG | - | chr3_2:15050352-15050371 | None:intergenic | 40.0% |
| CATCAGAGTCATGGTTCAAT+TGG | - | chr3_2:15050444-15050463 | None:intergenic | 40.0% | |
| TGTCTCACTAGTTCGATCTA+TGG | + | chr3_2:15050462-15050481 | Msa0396520:intron | 40.0% | |
| !! | GCCACCATTTGTTGTTATGT+AGG | + | chr3_2:15050685-15050704 | Msa0396520:intron | 40.0% |
| GCCTACATAACAACAAATGG+TGG | - | chr3_2:15050689-15050708 | None:intergenic | 40.0% | |
| CCTGCCTACATAACAACAAA+TGG | - | chr3_2:15050692-15050711 | None:intergenic | 40.0% | |
| !! | CCATTTGTTGTTATGTAGGC+AGG | + | chr3_2:15050689-15050708 | Msa0396520:intron | 40.0% |
| TGTTATGTAGGCAGGTTTAG+AGG | + | chr3_2:15050697-15050716 | Msa0396520:intron | 40.0% | |
| GTTATGTAGGCAGGTTTAGA+GGG | + | chr3_2:15050698-15050717 | Msa0396520:intron | 40.0% | |
| CCAAACACAAGCTAACAGTA+GGG | - | chr3_2:15050887-15050906 | None:intergenic | 40.0% | |
| ACCAAACACAAGCTAACAGT+AGG | - | chr3_2:15050888-15050907 | None:intergenic | 40.0% | |
| !! | TCTGTTGACTCTTCAGTTTG+AGG | - | chr3_2:15051149-15051168 | None:intergenic | 40.0% |
| ACATAGCATTCAAGCACACA+GGG | - | chr3_2:15051259-15051278 | None:intergenic | 40.0% | |
| TACATAGCATTCAAGCACAC+AGG | - | chr3_2:15051260-15051279 | None:intergenic | 40.0% | |
| ! | TGAAAAACAACCTGGTGGAT+TGG | - | chr3_2:15051287-15051306 | None:intergenic | 40.0% |
| GCGATCAATGAAAAACAACC+TGG | - | chr3_2:15051295-15051314 | None:intergenic | 40.0% | |
| !! | GATCGCTCATTGTTGATTTG+TGG | + | chr3_2:15051309-15051328 | Msa0396520:intron | 40.0% |
| CGGTATTTAGTGCAAAGTGT+TGG | + | chr3_2:15051440-15051459 | Msa0396520:intron | 40.0% | |
| !! | GCAAAGTGTTGGTTACATAG+CGG | + | chr3_2:15051451-15051470 | Msa0396520:intron | 40.0% |
| TCTTTGTTGCAGTGCTCAAA+TGG | + | chr3_2:15052019-15052038 | Msa0396520:intron | 40.0% | |
| AATGGTCACACTTTATGCTC+TGG | + | chr3_2:15052037-15052056 | Msa0396520:CDS | 40.0% | |
| !!! | TATCAAGGTTTTGGGTGCAT+AGG | + | chr3_2:15052169-15052188 | Msa0396520:CDS | 40.0% |
| CACAAAGTTGACATGCATAG+TGG | + | chr3_2:15052325-15052344 | Msa0396520:CDS | 40.0% | |
| AAATGCCACGTGGATGTTAA+CGG | + | chr3_2:15052396-15052415 | Msa0396520:CDS | 40.0% | |
| CATTTGTCCGTATCTGATAC+TGG | + | chr3_2:15052569-15052588 | Msa0396520:intron | 40.0% | |
| TGATACACTGACACAGACAA+TGG | - | chr3_2:15052653-15052672 | None:intergenic | 40.0% | |
| ! | TACGTGAGTTAGCTGATTTC+TGG | + | chr3_2:15052862-15052881 | Msa0396520:intron | 40.0% |
| ! | ACGTGAGTTAGCTGATTTCT+GGG | + | chr3_2:15052863-15052882 | Msa0396520:intron | 40.0% |
| ! | TGAAGCTTTTCAACTGGGAA+TGG | + | chr3_2:15052942-15052961 | Msa0396520:CDS | 40.0% |
| CGCAAAAATGCTATGTAGAC+AGG | - | chr3_2:15052970-15052989 | None:intergenic | 40.0% | |
| GAACTATACCTACAGTCTTG+AGG | + | chr3_2:15053017-15053036 | Msa0396520:CDS | 40.0% | |
| TATACCTACAGTCTTGAGGT+AGG | + | chr3_2:15053021-15053040 | Msa0396520:CDS | 40.0% | |
| !! | AAGGTTCGTGACAGTTTTGA+CGG | + | chr3_2:15053105-15053124 | Msa0396520:CDS | 40.0% |
| TCTCATCATTCAGAGGAACA+TGG | + | chr3_2:15053128-15053147 | Msa0396520:CDS | 40.0% | |
| ! | AACATGGCTCTCTTCTTTTC+CGG | + | chr3_2:15053144-15053163 | Msa0396520:CDS | 40.0% |
| CCCAGCTTGAAAATGTCGTA+TGG | - | chr3_2:15050276-15050295 | None:intergenic | 45.0% | |
| !! | TACGACATTTTCAAGCTGGG+AGG | + | chr3_2:15050276-15050295 | Msa0396520:intron | 45.0% |
| CTGGCCAAGTTGTAAGAGAT+TGG | + | chr3_2:15050300-15050319 | Msa0396520:intron | 45.0% | |
| ! | AAAACCCGGTTTGAATCGGT+TGG | + | chr3_2:15050344-15050363 | Msa0396520:intron | 45.0% |
| ! | CAAACCAACCGATTCAAACC+GGG | - | chr3_2:15050351-15050370 | None:intergenic | 45.0% |
| !! | TGAATCGGTTGGTTTGATCC+TGG | + | chr3_2:15050355-15050374 | Msa0396520:intron | 45.0% |
| CTAGTGAGACATCAGAGTCA+TGG | - | chr3_2:15050453-15050472 | None:intergenic | 45.0% | |
| CACTAGTTCGATCTATGGTG+TGG | + | chr3_2:15050467-15050486 | Msa0396520:intron | 45.0% | |
| !! | AGACTGTGGTGTTGATTGCT+TGG | + | chr3_2:15050612-15050631 | Msa0396520:intron | 45.0% |
| !! | TGGTGTTGATTGCTTGGAGT+TGG | + | chr3_2:15050618-15050637 | Msa0396520:intron | 45.0% |
| !! | TGCTTGGAGTTGGTTTGTGT+AGG | + | chr3_2:15050628-15050647 | Msa0396520:intron | 45.0% |
| !! | CCCTACTGTTAGCTTGTGTT+TGG | + | chr3_2:15050884-15050903 | Msa0396520:intron | 45.0% |
| ATGATATACGGAGCAGACCT+GGG | + | chr3_2:15051114-15051133 | Msa0396520:CDS | 45.0% | |
| ! | GTTGACTCTTCAGTTTGAGG+AGG | - | chr3_2:15051146-15051165 | None:intergenic | 45.0% |
| CTGCTTGAAACAGTCCCATT+AGG | - | chr3_2:15051215-15051234 | None:intergenic | 45.0% | |
| !! | AAACAACCTGGTGGATTGGA+GGG | - | chr3_2:15051283-15051302 | None:intergenic | 45.0% |
| !! | AAAACAACCTGGTGGATTGG+AGG | - | chr3_2:15051284-15051303 | None:intergenic | 45.0% |
| ! | TGATTTGTGGGTTCCTGAGA+TGG | + | chr3_2:15051322-15051341 | Msa0396520:intron | 45.0% |
| TTACAACCACATGCCATCTC+AGG | - | chr3_2:15051338-15051357 | None:intergenic | 45.0% | |
| GGCATGTGGTTGTAACTTAC+AGG | + | chr3_2:15051343-15051362 | Msa0396520:intron | 45.0% | |
| GCTATAGCACTATAGCGTAG+CGG | + | chr3_2:15051475-15051494 | Msa0396520:intron | 45.0% | |
| TTTCCAACATGTCATGTGGC+TGG | + | chr3_2:15051904-15051923 | Msa0396520:intron | 45.0% | |
| CTGGTCTATGCTGAGACAAT+TGG | + | chr3_2:15051923-15051942 | Msa0396520:intron | 45.0% | |
| GCTCGGCAATATTAGATGTC+TGG | + | chr3_2:15052105-15052124 | Msa0396520:CDS | 45.0% | |
| ! | TAGATGTCTGGCATTGGAGA+AGG | + | chr3_2:15052117-15052136 | Msa0396520:CDS | 45.0% |
| CCAGCGTATGGACAGTTATA+GGG | - | chr3_2:15052247-15052266 | None:intergenic | 45.0% | |
| CGTCGGTGATGTACAATTCT+TGG | + | chr3_2:15052282-15052301 | Msa0396520:CDS | 45.0% | |
| CGGTGATGTACAATTCTTGG+TGG | + | chr3_2:15052285-15052304 | Msa0396520:CDS | 45.0% | |
| ! | GTGGCATTTTCAACTTCCTG+TGG | - | chr3_2:15052385-15052404 | None:intergenic | 45.0% |
| AGGAAGTTGAAAATGCCACG+TGG | + | chr3_2:15052386-15052405 | Msa0396520:CDS | 45.0% | |
| GAATACCGTTAACATCCACG+TGG | - | chr3_2:15052404-15052423 | None:intergenic | 45.0% | |
| ! | CGTGAGTTAGCTGATTTCTG+GGG | + | chr3_2:15052864-15052883 | Msa0396520:intron | 45.0% |
| !! | TGGGGCTCACTTTTGTTTCT+AGG | + | chr3_2:15052882-15052901 | Msa0396520:intron | 45.0% |
| AGTCTTGAGGTAGGTGGAAA+TGG | + | chr3_2:15053030-15053049 | Msa0396520:CDS | 45.0% | |
| GTCTTGAGGTAGGTGGAAAT+GGG | + | chr3_2:15053031-15053050 | Msa0396520:CDS | 45.0% | |
| GAAATGGGAGGAAGATGACA+TGG | + | chr3_2:15053046-15053065 | Msa0396520:CDS | 45.0% | |
| TGGCTTTCCCTAATGCTTCT+AGG | - | chr3_2:15053081-15053100 | None:intergenic | 45.0% | |
| CAAAACTGTCACGAACCTTG+CGG | - | chr3_2:15053104-15053123 | None:intergenic | 45.0% | |
| TTGACGGTCTCATCATTCAG+AGG | + | chr3_2:15053121-15053140 | Msa0396520:CDS | 45.0% | |
| ! | ACATGGCTCTCTTCTTTTCC+GGG | + | chr3_2:15053145-15053164 | Msa0396520:CDS | 45.0% |
| TGAAACTACGAGTTACCGGA+AGG | + | chr3_2:15053184-15053203 | Msa0396520:CDS | 45.0% | |
| TACGAGTTACCGGAAGGATT+TGG | + | chr3_2:15053190-15053209 | Msa0396520:CDS | 45.0% | |
| CTGCTCTTTCCAAATCCTTC+CGG | - | chr3_2:15053202-15053221 | None:intergenic | 45.0% | |
| TTGCAGACGCGCACAAATGA+AGG | + | chr3_2:15049524-15049543 | Msa0396520:five_prime_UTR | 50.0% | |
| TGCAGACGCGCACAAATGAA+GGG | + | chr3_2:15049525-15049544 | Msa0396520:five_prime_UTR | 50.0% | |
| !! | CATTTTCAAGCTGGGAGGAC+TGG | + | chr3_2:15050281-15050300 | Msa0396520:intron | 50.0% |
| ATGTAGGCAGGTTTAGAGGG+TGG | + | chr3_2:15050701-15050720 | Msa0396520:intron | 50.0% | |
| TGTAGGCAGGTTTAGAGGGT+GGG | + | chr3_2:15050702-15050721 | Msa0396520:intron | 50.0% | |
| GATGATATACGGAGCAGACC+TGG | + | chr3_2:15051113-15051132 | Msa0396520:CDS | 50.0% | |
| TGATATACGGAGCAGACCTG+GGG | + | chr3_2:15051115-15051134 | Msa0396520:CDS | 50.0% | |
| TATGTACCCTCCAATCCACC+AGG | + | chr3_2:15051274-15051293 | Msa0396520:CDS | 50.0% | |
| AGACCAGCCACATGACATGT+TGG | - | chr3_2:15051910-15051929 | None:intergenic | 50.0% | |
| GCAAACCAAGAGTCCATGAC+CGG | + | chr3_2:15052062-15052081 | Msa0396520:CDS | 50.0% | |
| CGAGCTCATGCCTACAAGTA+GGG | - | chr3_2:15052090-15052109 | None:intergenic | 50.0% | |
| CCTACTTGTAGGCATGAGCT+CGG | + | chr3_2:15052088-15052107 | Msa0396520:CDS | 50.0% | |
| ! | ATGTCTGGCATTGGAGAAGG+TGG | + | chr3_2:15052120-15052139 | Msa0396520:CDS | 50.0% |
| CCCTATAACTGTCCATACGC+TGG | + | chr3_2:15052244-15052263 | Msa0396520:CDS | 50.0% | |
| GCCAGCGTATGGACAGTTAT+AGG | - | chr3_2:15052248-15052267 | None:intergenic | 50.0% | |
| !! | TGACACAGCACTGACACAAG+TGG | + | chr3_2:15052596-15052615 | Msa0396520:intron | 50.0% |
| ACCTACAGTCTTGAGGTAGG+TGG | + | chr3_2:15053024-15053043 | Msa0396520:CDS | 50.0% | |
| TCCACCTACCTCAAGACTGT+AGG | - | chr3_2:15053028-15053047 | None:intergenic | 50.0% | |
| TTGAGGTAGGTGGAAATGGG+AGG | + | chr3_2:15053034-15053053 | Msa0396520:CDS | 50.0% | |
| !! | AGGGAGTGCCTAGAAGCATT+AGG | + | chr3_2:15053070-15053089 | Msa0396520:CDS | 50.0% |
| !! | GGGAGTGCCTAGAAGCATTA+GGG | + | chr3_2:15053071-15053090 | Msa0396520:CDS | 50.0% |
| ! | CATGGCTCTCTTCTTTTCCG+GGG | + | chr3_2:15053146-15053165 | Msa0396520:CDS | 50.0% |
| ! | ATGGCTCTCTTCTTTTCCGG+GGG | + | chr3_2:15053147-15053166 | Msa0396520:CDS | 50.0% |
| ! | TCTTCTTTTCCGGGGGTGAT+AGG | + | chr3_2:15053154-15053173 | Msa0396520:CDS | 50.0% |
| CAATTCCTTCCTATCACCCC+CGG | - | chr3_2:15053166-15053185 | None:intergenic | 50.0% | |
| CATTTGTGCGCGTCTGCAAG+TGG | - | chr3_2:15049523-15049542 | None:intergenic | 55.0% | |
| GTTTGAGGAGGATCAACCCC+AGG | - | chr3_2:15051134-15051153 | None:intergenic | 55.0% | |
| TGGGTTCCTGAGATGGCATG+TGG | + | chr3_2:15051329-15051348 | Msa0396520:intron | 55.0% | |
| !! | TACAAGTAGGGCACCGGTCA+TGG | - | chr3_2:15052078-15052097 | None:intergenic | 55.0% |
| ATGACCGGTGCCCTACTTGT+AGG | + | chr3_2:15052077-15052096 | Msa0396520:CDS | 55.0% | |
| CATGCCTACAAGTAGGGCAC+CGG | - | chr3_2:15052084-15052103 | None:intergenic | 55.0% | |
| CCGAGCTCATGCCTACAAGT+AGG | - | chr3_2:15052091-15052110 | None:intergenic | 55.0% | |
| GCACATTCTGAGCCAGCGTA+TGG | - | chr3_2:15052259-15052278 | None:intergenic | 55.0% | |
| GGCTCAGAATGTGCTGTCGT+CGG | + | chr3_2:15052265-15052284 | Msa0396520:CDS | 55.0% | |
| TGGGAGGAAGATGACATGGC+AGG | + | chr3_2:15053050-15053069 | Msa0396520:CDS | 55.0% | |
| GGGAGGAAGATGACATGGCA+GGG | + | chr3_2:15053051-15053070 | Msa0396520:CDS | 55.0% | |
| CATTAGGGAAAGCCACCGCA+AGG | + | chr3_2:15053086-15053105 | Msa0396520:CDS | 55.0% | |
| AACTGTCACGAACCTTGCGG+TGG | - | chr3_2:15053101-15053120 | None:intergenic | 55.0% | |
| ! | CTTTTCCGGGGGTGATAGGA+AGG | + | chr3_2:15053158-15053177 | Msa0396520:CDS | 55.0% |
| ACGAAGGGGCTGCTGATCGT+TGG | + | chr3_2:15051056-15051075 | Msa0396520:intron | 60.0% | |
| !! | GGGCACCGGTCATGGACTCT+TGG | - | chr3_2:15052070-15052089 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 15049468 | 15053450 | 15049468 | ID=Msa0396520;Name=Msa0396520 |
| chr3_2 | mRNA | 15049468 | 15053450 | 15049468 | ID=Msa0396520-mRNA-1;Parent=Msa0396520;Name=Msa0396520-mRNA-1;_AED=0.06;_eAED=0.06;_QI=259|1|1|1|0.5|0.4|5|206|304 |
| chr3_2 | exon | 15049468 | 15049699 | 15049468 | ID=Msa0396520-mRNA-1:exon:3339;Parent=Msa0396520-mRNA-1 |
| chr3_2 | exon | 15051062 | 15051295 | 15051062 | ID=Msa0396520-mRNA-1:exon:3340;Parent=Msa0396520-mRNA-1 |
| chr3_2 | exon | 15052031 | 15052417 | 15052031 | ID=Msa0396520-mRNA-1:exon:3341;Parent=Msa0396520-mRNA-1 |
| chr3_2 | exon | 15052904 | 15053260 | 15052904 | ID=Msa0396520-mRNA-1:exon:3342;Parent=Msa0396520-mRNA-1 |
| chr3_2 | exon | 15053281 | 15053450 | 15053281 | ID=Msa0396520-mRNA-1:exon:3343;Parent=Msa0396520-mRNA-1 |
| chr3_2 | five_prime_UTR | 15049468 | 15049699 | 15049468 | ID=Msa0396520-mRNA-1:five_prime_utr;Parent=Msa0396520-mRNA-1 |
| chr3_2 | five_prime_UTR | 15051062 | 15051088 | 15051062 | ID=Msa0396520-mRNA-1:five_prime_utr;Parent=Msa0396520-mRNA-1 |
| chr3_2 | CDS | 15051089 | 15051295 | 15051089 | ID=Msa0396520-mRNA-1:cds;Parent=Msa0396520-mRNA-1 |
| chr3_2 | CDS | 15052031 | 15052417 | 15052031 | ID=Msa0396520-mRNA-1:cds;Parent=Msa0396520-mRNA-1 |
| chr3_2 | CDS | 15052904 | 15053224 | 15052904 | ID=Msa0396520-mRNA-1:cds;Parent=Msa0396520-mRNA-1 |
| chr3_2 | three_prime_UTR | 15053225 | 15053260 | 15053225 | ID=Msa0396520-mRNA-1:three_prime_utr;Parent=Msa0396520-mRNA-1 |
| chr3_2 | three_prime_UTR | 15053281 | 15053450 | 15053281 | ID=Msa0396520-mRNA-1:three_prime_utr;Parent=Msa0396520-mRNA-1 |
| Gene Sequence |
| Protein sequence |
