Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0352300 | MCI24214.1 | 51.724 | 116 | 51 | 2 | 146 | 256 | 22 | 137 | 2.75e-23 | 102 |
| Msa0352300 | MCI24214.1 | 65.385 | 130 | 33 | 1 | 66 | 183 | 10 | 139 | 9.63e-46 | 160 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0352300 | A0A392QJZ9 | 51.724 | 116 | 51 | 2 | 146 | 256 | 22 | 137 | 1.31e-23 | 102 |
| Msa0352300 | A0A392QJZ9 | 65.385 | 130 | 33 | 1 | 66 | 183 | 10 | 139 | 4.60e-46 | 160 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0352280 | Msa0352300 | 0.914512 | 1.758294e-84 | -8.615850e-47 |
| Msa0352300 | Msa0818030 | 0.818253 | 2.158630e-52 | -8.615850e-47 |
| Msa0352300 | Msa0902020 | 0.833445 | 5.311426e-56 | -8.615850e-47 |
| Msa0352300 | Msa1359820 | 0.807733 | 4.375574e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0352300 | MtrunA17_Chr3g0107931 | 46.058 | 241 | 47 | 3 | 26 | 183 | 1633 | 1873 | 6.57e-48 | 170 |
| Msa0352300 | MtrunA17_Chr3g0108171 | 43.494 | 269 | 41 | 6 | 26 | 183 | 1685 | 1953 | 2.37e-46 | 165 |
| Msa0352300 | MtrunA17_Chr3g0096771 | 56.618 | 136 | 42 | 1 | 66 | 184 | 141 | 276 | 6.99e-42 | 144 |
| Msa0352300 | MtrunA17_Chr3g0096771 | 64.286 | 70 | 25 | 0 | 187 | 256 | 204 | 273 | 1.21e-21 | 91.3 |
| Msa0352300 | MtrunA17_Chr3g0105471 | 50.955 | 157 | 37 | 1 | 66 | 182 | 82 | 238 | 1.41e-41 | 142 |
| Msa0352300 | MtrunA17_Chr2g0304131 | 49.367 | 158 | 40 | 1 | 66 | 183 | 144 | 301 | 3.13e-39 | 138 |
| Msa0352300 | MtrunA17_Chr3g0107641 | 49.686 | 159 | 40 | 1 | 65 | 183 | 20 | 178 | 3.58e-36 | 127 |
| Msa0352300 | MtrunA17_Chr3g0108151 | 48.408 | 157 | 41 | 1 | 66 | 182 | 1379 | 1535 | 8.00e-36 | 135 |
| Msa0352300 | MtrunA17_Chr3g0107261 | 45.283 | 159 | 47 | 1 | 66 | 184 | 228 | 386 | 8.70e-34 | 126 |
| Msa0352300 | MtrunA17_Chr3g0108821 | 47.561 | 164 | 39 | 2 | 66 | 182 | 1631 | 1794 | 3.51e-33 | 127 |
| Msa0352300 | MtrunA17_Chr3g0112521 | 77.027 | 74 | 17 | 0 | 186 | 259 | 5 | 78 | 4.11e-33 | 115 |
| Msa0352300 | MtrunA17_Chr3g0112521 | 78.873 | 71 | 15 | 0 | 112 | 182 | 6 | 76 | 7.92e-33 | 115 |
| Msa0352300 | MtrunA17_Chr3g0105521 | 47.771 | 157 | 37 | 2 | 66 | 182 | 1446 | 1597 | 6.11e-32 | 124 |
| Msa0352300 | MtrunA17_Chr3g0097011 | 35.115 | 262 | 52 | 5 | 26 | 183 | 136 | 383 | 1.55e-30 | 117 |
| Msa0352300 | MtrunA17_Chr3g0091861 | 45.912 | 159 | 32 | 2 | 65 | 183 | 1715 | 1859 | 1.84e-30 | 119 |
| Msa0352300 | MtrunA17_Chr3g0107171 | 43.258 | 178 | 64 | 4 | 41 | 183 | 194 | 369 | 3.54e-30 | 116 |
| Msa0352300 | MtrunA17_Chr3g0107171 | 64.286 | 70 | 25 | 0 | 187 | 256 | 298 | 367 | 1.77e-21 | 92.4 |
| Msa0352300 | MtrunA17_Chr3g0087641 | 55.172 | 116 | 12 | 1 | 65 | 140 | 231 | 346 | 6.08e-30 | 115 |
| Msa0352300 | MtrunA17_Chr3g0108811 | 46.012 | 163 | 37 | 3 | 66 | 186 | 1775 | 1928 | 7.17e-30 | 118 |
| Msa0352300 | MtrunA17_Chr7g0223911 | 62.195 | 82 | 31 | 0 | 101 | 182 | 71 | 152 | 8.98e-30 | 109 |
| Msa0352300 | MtrunA17_Chr7g0223911 | 61.429 | 70 | 27 | 0 | 187 | 256 | 82 | 151 | 2.28e-22 | 90.5 |
| Msa0352300 | MtrunA17_Chr3g0105591 | 44.785 | 163 | 43 | 2 | 66 | 181 | 264 | 426 | 1.10e-29 | 115 |
| Msa0352300 | MtrunA17_Chr3g0105551 | 43.293 | 164 | 46 | 2 | 66 | 182 | 1693 | 1856 | 2.38e-29 | 116 |
| Msa0352300 | MtrunA17_Chr3g0108761 | 42.767 | 159 | 37 | 2 | 65 | 183 | 22 | 166 | 5.64e-28 | 105 |
| Msa0352300 | MtrunA17_Chr3g0091851 | 42.138 | 159 | 37 | 3 | 65 | 183 | 1158 | 1301 | 2.23e-24 | 102 |
| Msa0352300 | MtrunA17_Chr3g0108091 | 40.972 | 144 | 31 | 2 | 65 | 168 | 370 | 499 | 2.61e-21 | 92.8 |
| Msa0352300 | MtrunA17_Chr3g0108071 | 40.972 | 144 | 31 | 2 | 65 | 168 | 833 | 962 | 5.14e-21 | 92.0 |
| Msa0352300 | MtrunA17_Chr3g0109131 | 68.254 | 63 | 20 | 0 | 122 | 184 | 97 | 159 | 7.78e-21 | 86.7 |
| Msa0352300 | MtrunA17_Chr3g0109131 | 68.333 | 60 | 19 | 0 | 197 | 256 | 97 | 156 | 2.60e-18 | 79.7 |
| Msa0352300 | MtrunA17_Chr7g0229711 | 38.095 | 147 | 42 | 3 | 70 | 183 | 7 | 137 | 7.55e-17 | 75.1 |
| Msa0352300 | MtrunA17_Chr3g0105491 | 51.562 | 64 | 24 | 1 | 200 | 256 | 1 | 64 | 2.94e-11 | 58.2 |
| Msa0352300 | MtrunA17_Chr3g0105491 | 50.769 | 65 | 25 | 1 | 125 | 182 | 1 | 65 | 4.89e-11 | 57.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 32 sgRNAs with CRISPR-Local
Find 242 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACAGTCTCTGAAGCTATTT+TGG | 0.152194 | 3_1:-21039501 | Msa0352300:CDS |
| GACAGTCTCTGAAGCTATTT+TGG | 0.152194 | 3_1:-21039793 | Msa0352300:CDS |
| TTACAAGATGTTCGCAAATT+TGG | 0.202388 | 3_1:-21039996 | Msa0352300:intron |
| CTTCCTTGGTTACACGCTTC+TGG | 0.219273 | 3_1:+21039588 | None:intergenic |
| CTTCCTTGGTTACACGCTTC+TGG | 0.219273 | 3_1:+21039880 | None:intergenic |
| AAATGCATTGCAAAAGCTAT+TGG | 0.277807 | 3_1:-21039615 | Msa0352300:CDS |
| AAATGCATTGCAAAAGCTAT+TGG | 0.277807 | 3_1:-21039907 | Msa0352300:CDS |
| ATCAGTAGCTAAATGATTCT+TGG | 0.290113 | 3_1:+21040192 | None:intergenic |
| TGATCAAGGTGAAGACTCTT+TGG | 0.310630 | 3_1:-21040733 | Msa0352300:CDS |
| TTCCTTGGTTACACGCTTCT+GGG | 0.371059 | 3_1:+21039589 | None:intergenic |
| TTCCTTGGTTACACGCTTCT+GGG | 0.371059 | 3_1:+21039881 | None:intergenic |
| CGTTGAGTTGGTTAGAATTG+AGG | 0.419380 | 3_1:-21041125 | Msa0352300:CDS |
| GCGCATCTCTTCAACTTCCT+TGG | 0.433951 | 3_1:+21039574 | None:intergenic |
| GCGCATCTCTTCAACTTCCT+TGG | 0.433951 | 3_1:+21039866 | None:intergenic |
| GTTGAGTTGGTTAGAATTGA+GGG | 0.451282 | 3_1:-21041124 | Msa0352300:CDS |
| GCGTCCGTTAAAAGAATTGA+AGG | 0.452394 | 3_1:+21040133 | None:intergenic |
| AAGCGCTTAAGTGCCCCTTT+TGG | 0.454685 | 3_1:-21039688 | Msa0352300:intron |
| AAGATGTTGATGTTAAAATC+TGG | 0.466817 | 3_1:-21040779 | Msa0352300:CDS |
| TCAACACGATCCAACCAAAA+GGG | 0.478404 | 3_1:+21039674 | None:intergenic |
| TTCAACACGATCCAACCAAA+AGG | 0.483684 | 3_1:+21039673 | None:intergenic |
| AGTAACACTAATATTGATCA+AGG | 0.544327 | 3_1:-21040747 | Msa0352300:CDS |
| TTGCCACATATGCGTTGAGT+TGG | 0.544855 | 3_1:-21041137 | Msa0352300:CDS |
| TGTTGATGTTAAAATCTGGC+AGG | 0.560410 | 3_1:-21040775 | Msa0352300:CDS |
| TAACCAACTCAACGCATATG+TGG | 0.569365 | 3_1:+21041134 | None:intergenic |
| TTTAACATCAACATCTTGAG+TGG | 0.573990 | 3_1:+21040785 | None:intergenic |
| AGTTGGTTAGAATTGAGGGT+TGG | 0.574818 | 3_1:-21041120 | Msa0352300:CDS |
| CAACACGATCCAACCAAAAG+GGG | 0.588997 | 3_1:+21039675 | None:intergenic |
| TAACACTTTGAATCGACATG+TGG | 0.607054 | 3_1:-21039543 | Msa0352300:CDS |
| TTCCCAGAAGCGTGTAACCA+AGG | 0.623541 | 3_1:-21039591 | Msa0352300:CDS |
| TTCCCAGAAGCGTGTAACCA+AGG | 0.623541 | 3_1:-21039883 | Msa0352300:CDS |
| TAACACTTTGAATCGACATG+TGG | 0.634653 | 3_1:-21039835 | Msa0352300:CDS |
| GAATTGAAGGATGCTTAACA+AGG | 0.637134 | 3_1:+21040146 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTATAGAAAAAGAAAAT+AGG | + | chr3_1:21039694-21039713 | None:intergenic | 10.0% |
| !!! | TATTTTTTTTTTATCGTTAA+TGG | - | chr3_1:21040137-21040156 | Msa0352300:CDS | 10.0% |
| !! | TTATTATAGAAAAAGAAAAT+AGG | + | chr3_1:21039694-21039713 | None:intergenic | 10.0% |
| !!! | TATTTTTTTTTTATCGTTAA+TGG | - | chr3_1:21040137-21040156 | Msa0352300:CDS | 10.0% |
| !!! | ATAGTAAGTTTTTTTTTTGA+AGG | - | chr3_1:21039740-21039759 | Msa0352300:intron | 15.0% |
| !! | TCATGAATTCTTAATATTAT+AGG | + | chr3_1:21039780-21039799 | None:intergenic | 15.0% |
| !!! | TTCTTTTAAATGAATTTTGT+AGG | - | chr3_1:21039808-21039827 | Msa0352300:CDS | 15.0% |
| !!! | TTTTGAGAAAATTTTAAATC+AGG | + | chr3_1:21040707-21040726 | None:intergenic | 15.0% |
| !!! | TTTTGAGAAAATTTTAAATC+AGG | + | chr3_1:21040707-21040726 | None:intergenic | 15.0% |
| !!! | ATAGTAAGTTTTTTTTTTGA+AGG | - | chr3_1:21039740-21039759 | Msa0352300:intron | 15.0% |
| !! | TCATGAATTCTTAATATTAT+AGG | + | chr3_1:21039780-21039799 | None:intergenic | 15.0% |
| !!! | TTCTTTTAAATGAATTTTGT+AGG | - | chr3_1:21039808-21039827 | Msa0352300:CDS | 15.0% |
| !!! | TTTTGAGAAAATTTTAAATC+AGG | + | chr3_1:21040707-21040726 | None:intergenic | 15.0% |
| !!! | TTTTGAGAAAATTTTAAATC+AGG | + | chr3_1:21040707-21040726 | None:intergenic | 15.0% |
| !! | ATCAAAATGACTCTTATAAA+TGG | + | chr3_1:21039609-21039628 | None:intergenic | 20.0% |
| !! | TGATATAAAGAGAACATAAT+TGG | - | chr3_1:21039625-21039644 | Msa0352300:CDS | 20.0% |
| !! | TAATAAAGTAAGCTTACTTT+AGG | - | chr3_1:21039708-21039727 | Msa0352300:intron | 20.0% |
| !!! | TTTTTTTTTGAAGGATAGTA+AGG | - | chr3_1:21039749-21039768 | Msa0352300:intron | 20.0% |
| !! | AAAAAAAAAATACCTTCAGA+AGG | + | chr3_1:21040129-21040148 | None:intergenic | 20.0% |
| !!! | TTTTTTTTATCGTTAATGGA+TGG | - | chr3_1:21040141-21040160 | Msa0352300:CDS | 20.0% |
| !!! | AAAAAACAAAATTTTGAGCT+TGG | - | chr3_1:21040210-21040229 | Msa0352300:CDS | 20.0% |
| !!! | TTATTTTTTCCTATACTTTC+AGG | - | chr3_1:21040345-21040364 | Msa0352300:intron | 20.0% |
| !!! | TATTTTTTCCTATACTTTCA+GGG | - | chr3_1:21040346-21040365 | Msa0352300:intron | 20.0% |
| !! | AATCTTCATATATTTGAGAA+GGG | + | chr3_1:21040374-21040393 | None:intergenic | 20.0% |
| !! | AAATCTTCATATATTTGAGA+AGG | + | chr3_1:21040375-21040394 | None:intergenic | 20.0% |
| !! | ATCAAAATGACTCTTATAAA+TGG | + | chr3_1:21039609-21039628 | None:intergenic | 20.0% |
| !! | TGATATAAAGAGAACATAAT+TGG | - | chr3_1:21039625-21039644 | Msa0352300:CDS | 20.0% |
| !! | TAATAAAGTAAGCTTACTTT+AGG | - | chr3_1:21039708-21039727 | Msa0352300:intron | 20.0% |
| !!! | TTTTTTTTTGAAGGATAGTA+AGG | - | chr3_1:21039749-21039768 | Msa0352300:intron | 20.0% |
| !! | AAAAAAAAAATACCTTCAGA+AGG | + | chr3_1:21040129-21040148 | None:intergenic | 20.0% |
| !!! | TTTTTTTTATCGTTAATGGA+TGG | - | chr3_1:21040141-21040160 | Msa0352300:CDS | 20.0% |
| !!! | AAAAAACAAAATTTTGAGCT+TGG | - | chr3_1:21040210-21040229 | Msa0352300:CDS | 20.0% |
| !!! | TTATTTTTTCCTATACTTTC+AGG | - | chr3_1:21040345-21040364 | Msa0352300:intron | 20.0% |
| !!! | TATTTTTTCCTATACTTTCA+GGG | - | chr3_1:21040346-21040365 | Msa0352300:intron | 20.0% |
| !! | AATCTTCATATATTTGAGAA+GGG | + | chr3_1:21040374-21040393 | None:intergenic | 20.0% |
| !! | AAATCTTCATATATTTGAGA+AGG | + | chr3_1:21040375-21040394 | None:intergenic | 20.0% |
| !! | AAATGAATTTTGTAGGAAGA+TGG | - | chr3_1:21039815-21039834 | Msa0352300:CDS | 25.0% |
| ! | AAGATGTTGATGTTAAAATC+TGG | - | chr3_1:21039852-21039871 | Msa0352300:CDS | 25.0% |
| ! | AGTAACACTAATATTGATCA+AGG | - | chr3_1:21039884-21039903 | Msa0352300:CDS | 25.0% |
| ! | ACTAATATTTCTTCATCCTT+AGG | + | chr3_1:21040060-21040079 | None:intergenic | 25.0% |
| ! | AGAGAAAAATATGTACAAGA+GGG | + | chr3_1:21040182-21040201 | None:intergenic | 25.0% |
| ! | AAGAGAAAAATATGTACAAG+AGG | + | chr3_1:21040183-21040202 | None:intergenic | 25.0% |
| !! | TTTTTACTAAACCAGAAGAA+AGG | + | chr3_1:21040305-21040324 | None:intergenic | 25.0% |
| !!! | ATTTTTTCCTATACTTTCAG+GGG | - | chr3_1:21040347-21040366 | Msa0352300:intron | 25.0% |
| ! | TGAAGATTTAAGCTCTTATT+TGG | - | chr3_1:21040386-21040405 | Msa0352300:intron | 25.0% |
| ! | TTCACTAAGTAATAGATACA+AGG | - | chr3_1:21040521-21040540 | Msa0352300:intron | 25.0% |
| ! | TCACTAAGTAATAGATACAA+GGG | - | chr3_1:21040522-21040541 | Msa0352300:intron | 25.0% |
| ! | ATAACTCAACAAATTCAGAT+GGG | + | chr3_1:21040616-21040635 | None:intergenic | 25.0% |
| ! | AATAACTCAACAAATTCAGA+TGG | + | chr3_1:21040617-21040636 | None:intergenic | 25.0% |
| !!! | AATTTGGTTTTGATAAGGAT+TGG | - | chr3_1:21040651-21040670 | Msa0352300:intron | 25.0% |
| !!! | AACACAAGTTTTAGAAACTA+AGG | - | chr3_1:21040880-21040899 | Msa0352300:intron | 25.0% |
| !! | AAATGAATTTTGTAGGAAGA+TGG | - | chr3_1:21039815-21039834 | Msa0352300:CDS | 25.0% |
| ! | AAGATGTTGATGTTAAAATC+TGG | - | chr3_1:21039852-21039871 | Msa0352300:CDS | 25.0% |
| ! | AGTAACACTAATATTGATCA+AGG | - | chr3_1:21039884-21039903 | Msa0352300:CDS | 25.0% |
| ! | ACTAATATTTCTTCATCCTT+AGG | + | chr3_1:21040060-21040079 | None:intergenic | 25.0% |
| ! | AGAGAAAAATATGTACAAGA+GGG | + | chr3_1:21040182-21040201 | None:intergenic | 25.0% |
| ! | AAGAGAAAAATATGTACAAG+AGG | + | chr3_1:21040183-21040202 | None:intergenic | 25.0% |
| !! | TTTTTACTAAACCAGAAGAA+AGG | + | chr3_1:21040305-21040324 | None:intergenic | 25.0% |
| !!! | ATTTTTTCCTATACTTTCAG+GGG | - | chr3_1:21040347-21040366 | Msa0352300:intron | 25.0% |
| ! | TGAAGATTTAAGCTCTTATT+TGG | - | chr3_1:21040386-21040405 | Msa0352300:intron | 25.0% |
| ! | TTCACTAAGTAATAGATACA+AGG | - | chr3_1:21040521-21040540 | Msa0352300:intron | 25.0% |
| ! | TCACTAAGTAATAGATACAA+GGG | - | chr3_1:21040522-21040541 | Msa0352300:intron | 25.0% |
| ! | ATAACTCAACAAATTCAGAT+GGG | + | chr3_1:21040616-21040635 | None:intergenic | 25.0% |
| ! | AATAACTCAACAAATTCAGA+TGG | + | chr3_1:21040617-21040636 | None:intergenic | 25.0% |
| !!! | AATTTGGTTTTGATAAGGAT+TGG | - | chr3_1:21040651-21040670 | Msa0352300:intron | 25.0% |
| !!! | AACACAAGTTTTAGAAACTA+AGG | - | chr3_1:21040880-21040899 | Msa0352300:intron | 25.0% |
| TTTAACATCAACATCTTGAG+TGG | + | chr3_1:21039849-21039868 | None:intergenic | 30.0% | |
| TCAAAATGAAAAGGCTAATG+AGG | + | chr3_1:21039947-21039966 | None:intergenic | 30.0% | |
| GGTTCAACTTCAAAATGAAA+AGG | + | chr3_1:21039956-21039975 | None:intergenic | 30.0% | |
| AATACAAGAGAGTCTTGATT+TGG | + | chr3_1:21040085-21040104 | None:intergenic | 30.0% | |
| !! | TTATCGTTAATGGATGGTTT+TGG | - | chr3_1:21040147-21040166 | Msa0352300:CDS | 30.0% |
| AAAAATATGTACAAGAGGGT+GGG | + | chr3_1:21040178-21040197 | None:intergenic | 30.0% | |
| ! | AAACAAAATTTTGAGCTTGG+TGG | - | chr3_1:21040213-21040232 | Msa0352300:CDS | 30.0% |
| ATCAGTAGCTAAATGATTCT+TGG | + | chr3_1:21040442-21040461 | None:intergenic | 30.0% | |
| ! | GCATCCTTCAATTCTTTTAA+CGG | - | chr3_1:21040494-21040513 | Msa0352300:intron | 30.0% |
| ATTTCAATAGCTACAGTTGT+AGG | + | chr3_1:21040553-21040572 | None:intergenic | 30.0% | |
| TTACAAGATGTTCGCAAATT+TGG | - | chr3_1:21040635-21040654 | Msa0352300:intron | 30.0% | |
| !!! | TCGCAAATTTGGTTTTGATA+AGG | - | chr3_1:21040646-21040665 | Msa0352300:intron | 30.0% |
| AAATGCATTGCAAAAGCTAT+TGG | - | chr3_1:21040724-21040743 | Msa0352300:intron | 30.0% | |
| AAATGCATTGCAAAAGCTAT+TGG | - | chr3_1:21040724-21040743 | Msa0352300:intron | 30.0% | |
| TTTAACATCAACATCTTGAG+TGG | + | chr3_1:21039849-21039868 | None:intergenic | 30.0% | |
| TCAAAATGAAAAGGCTAATG+AGG | + | chr3_1:21039947-21039966 | None:intergenic | 30.0% | |
| GGTTCAACTTCAAAATGAAA+AGG | + | chr3_1:21039956-21039975 | None:intergenic | 30.0% | |
| AATACAAGAGAGTCTTGATT+TGG | + | chr3_1:21040085-21040104 | None:intergenic | 30.0% | |
| !! | TTATCGTTAATGGATGGTTT+TGG | - | chr3_1:21040147-21040166 | Msa0352300:CDS | 30.0% |
| AAAAATATGTACAAGAGGGT+GGG | + | chr3_1:21040178-21040197 | None:intergenic | 30.0% | |
| ! | AAACAAAATTTTGAGCTTGG+TGG | - | chr3_1:21040213-21040232 | Msa0352300:CDS | 30.0% |
| ATCAGTAGCTAAATGATTCT+TGG | + | chr3_1:21040442-21040461 | None:intergenic | 30.0% | |
| ! | GCATCCTTCAATTCTTTTAA+CGG | - | chr3_1:21040494-21040513 | Msa0352300:intron | 30.0% |
| ATTTCAATAGCTACAGTTGT+AGG | + | chr3_1:21040553-21040572 | None:intergenic | 30.0% | |
| TTACAAGATGTTCGCAAATT+TGG | - | chr3_1:21040635-21040654 | Msa0352300:intron | 30.0% | |
| !!! | TCGCAAATTTGGTTTTGATA+AGG | - | chr3_1:21040646-21040665 | Msa0352300:intron | 30.0% |
| AAATGCATTGCAAAAGCTAT+TGG | - | chr3_1:21040724-21040743 | Msa0352300:intron | 30.0% | |
| AAATGCATTGCAAAAGCTAT+TGG | - | chr3_1:21040724-21040743 | Msa0352300:intron | 30.0% | |
| !! | GTTGAGTTGGTTAGAATTGA+GGG | - | chr3_1:21039507-21039526 | Msa0352300:CDS | 35.0% |
| ! | TTTATCCCCTTTTGCAAAAG+TGG | + | chr3_1:21039539-21039558 | None:intergenic | 35.0% |
| TGTTGATGTTAAAATCTGGC+AGG | - | chr3_1:21039856-21039875 | Msa0352300:CDS | 35.0% | |
| ATTTAGGGAAGCTGAACAAA+GGG | + | chr3_1:21039992-21040011 | None:intergenic | 35.0% | |
| CATGACAGCATCATCATTTA+GGG | + | chr3_1:21040007-21040026 | None:intergenic | 35.0% | |
| TCATGACAGCATCATCATTT+AGG | + | chr3_1:21040008-21040027 | None:intergenic | 35.0% | |
| GAAAGTAAGCTCAGATATTC+AGG | - | chr3_1:21040026-21040045 | Msa0352300:intron | 35.0% | |
| TATTCAGGATGAGTTTCCTA+AGG | - | chr3_1:21040041-21040060 | Msa0352300:intron | 35.0% | |
| GAAAAATATGTACAAGAGGG+TGG | + | chr3_1:21040179-21040198 | None:intergenic | 35.0% | |
| ! | CTCTTATTTGGTTGTCACAA+GGG | - | chr3_1:21040398-21040417 | Msa0352300:intron | 35.0% |
| GAATTGAAGGATGCTTAACA+AGG | + | chr3_1:21040488-21040507 | None:intergenic | 35.0% | |
| TAACACATCCAACACACTAT+GGG | + | chr3_1:21040585-21040604 | None:intergenic | 35.0% | |
| !!! | TGGTTTTGATAAGGATTGGT+TGG | - | chr3_1:21040655-21040674 | Msa0352300:intron | 35.0% |
| TAACACTTTGAATCGACATG+TGG | - | chr3_1:21040796-21040815 | Msa0352300:CDS | 35.0% | |
| TAACACTTTGAATCGACATG+TGG | - | chr3_1:21040796-21040815 | Msa0352300:CDS | 35.0% | |
| !! | GTTGAGTTGGTTAGAATTGA+GGG | - | chr3_1:21039507-21039526 | Msa0352300:CDS | 35.0% |
| ! | TTTATCCCCTTTTGCAAAAG+TGG | + | chr3_1:21039539-21039558 | None:intergenic | 35.0% |
| TGTTGATGTTAAAATCTGGC+AGG | - | chr3_1:21039856-21039875 | Msa0352300:CDS | 35.0% | |
| ATTTAGGGAAGCTGAACAAA+GGG | + | chr3_1:21039992-21040011 | None:intergenic | 35.0% | |
| CATGACAGCATCATCATTTA+GGG | + | chr3_1:21040007-21040026 | None:intergenic | 35.0% | |
| TCATGACAGCATCATCATTT+AGG | + | chr3_1:21040008-21040027 | None:intergenic | 35.0% | |
| GAAAGTAAGCTCAGATATTC+AGG | - | chr3_1:21040026-21040045 | Msa0352300:intron | 35.0% | |
| TATTCAGGATGAGTTTCCTA+AGG | - | chr3_1:21040041-21040060 | Msa0352300:intron | 35.0% | |
| GAAAAATATGTACAAGAGGG+TGG | + | chr3_1:21040179-21040198 | None:intergenic | 35.0% | |
| ! | CTCTTATTTGGTTGTCACAA+GGG | - | chr3_1:21040398-21040417 | Msa0352300:intron | 35.0% |
| GAATTGAAGGATGCTTAACA+AGG | + | chr3_1:21040488-21040507 | None:intergenic | 35.0% | |
| TAACACATCCAACACACTAT+GGG | + | chr3_1:21040585-21040604 | None:intergenic | 35.0% | |
| !!! | TGGTTTTGATAAGGATTGGT+TGG | - | chr3_1:21040655-21040674 | Msa0352300:intron | 35.0% |
| TAACACTTTGAATCGACATG+TGG | - | chr3_1:21040796-21040815 | Msa0352300:CDS | 35.0% | |
| TAACACTTTGAATCGACATG+TGG | - | chr3_1:21040796-21040815 | Msa0352300:CDS | 35.0% | |
| TAACCAACTCAACGCATATG+TGG | + | chr3_1:21039500-21039519 | None:intergenic | 40.0% | |
| !! | CGTTGAGTTGGTTAGAATTG+AGG | - | chr3_1:21039506-21039525 | Msa0352300:CDS | 40.0% |
| AGTTGGTTAGAATTGAGGGT+TGG | - | chr3_1:21039511-21039530 | Msa0352300:CDS | 40.0% | |
| !!! | TTGGTGCCACTTTTGCAAAA+GGG | - | chr3_1:21039530-21039549 | Msa0352300:CDS | 40.0% |
| TGATCAAGGTGAAGACTCTT+TGG | - | chr3_1:21039898-21039917 | Msa0352300:CDS | 40.0% | |
| CATTTAGGGAAGCTGAACAA+AGG | + | chr3_1:21039993-21040012 | None:intergenic | 40.0% | |
| ! | ATACCTTCAGAAGGCTTTGA+AGG | + | chr3_1:21040120-21040139 | None:intergenic | 40.0% |
| ! | ATTGGGGTACCAACCTAATT+GGG | - | chr3_1:21040252-21040271 | Msa0352300:intron | 40.0% |
| TACCAACCTAATTGGGATGT+CGG | - | chr3_1:21040259-21040278 | Msa0352300:intron | 40.0% | |
| ACTAAACCAGAAGAAAGGAC+AGG | + | chr3_1:21040300-21040319 | None:intergenic | 40.0% | |
| ! | GCTCTTATTTGGTTGTCACA+AGG | - | chr3_1:21040397-21040416 | Msa0352300:intron | 40.0% |
| GCGTCCGTTAAAAGAATTGA+AGG | + | chr3_1:21040501-21040520 | None:intergenic | 40.0% | |
| CTAACACATCCAACACACTA+TGG | + | chr3_1:21040586-21040605 | None:intergenic | 40.0% | |
| CATAGTGTGTTGGATGTGTT+AGG | - | chr3_1:21040584-21040603 | Msa0352300:intron | 40.0% | |
| !!! | GACAGTCTCTGAAGCTATTT+TGG | - | chr3_1:21040838-21040857 | Msa0352300:intron | 40.0% |
| ACACGATCCAATAGCCAAAA+GGG | + | chr3_1:21040919-21040938 | None:intergenic | 40.0% | |
| AACACGATCCAATAGCCAAA+AGG | + | chr3_1:21040920-21040939 | None:intergenic | 40.0% | |
| TCAACACGATCCAACCAAAA+GGG | + | chr3_1:21040960-21040979 | None:intergenic | 40.0% | |
| TTCAACACGATCCAACCAAA+AGG | + | chr3_1:21040961-21040980 | None:intergenic | 40.0% | |
| !!! | GACAGTCTCTGAAGCTATTT+TGG | - | chr3_1:21040838-21040857 | Msa0352300:intron | 40.0% |
| TAACCAACTCAACGCATATG+TGG | + | chr3_1:21039500-21039519 | None:intergenic | 40.0% | |
| !! | CGTTGAGTTGGTTAGAATTG+AGG | - | chr3_1:21039506-21039525 | Msa0352300:CDS | 40.0% |
| AGTTGGTTAGAATTGAGGGT+TGG | - | chr3_1:21039511-21039530 | Msa0352300:CDS | 40.0% | |
| !!! | TTGGTGCCACTTTTGCAAAA+GGG | - | chr3_1:21039530-21039549 | Msa0352300:CDS | 40.0% |
| TGATCAAGGTGAAGACTCTT+TGG | - | chr3_1:21039898-21039917 | Msa0352300:CDS | 40.0% | |
| CATTTAGGGAAGCTGAACAA+AGG | + | chr3_1:21039993-21040012 | None:intergenic | 40.0% | |
| ! | ATACCTTCAGAAGGCTTTGA+AGG | + | chr3_1:21040120-21040139 | None:intergenic | 40.0% |
| ! | ATTGGGGTACCAACCTAATT+GGG | - | chr3_1:21040252-21040271 | Msa0352300:intron | 40.0% |
| TACCAACCTAATTGGGATGT+CGG | - | chr3_1:21040259-21040278 | Msa0352300:intron | 40.0% | |
| ACTAAACCAGAAGAAAGGAC+AGG | + | chr3_1:21040300-21040319 | None:intergenic | 40.0% | |
| ! | GCTCTTATTTGGTTGTCACA+AGG | - | chr3_1:21040397-21040416 | Msa0352300:intron | 40.0% |
| GCGTCCGTTAAAAGAATTGA+AGG | + | chr3_1:21040501-21040520 | None:intergenic | 40.0% | |
| CTAACACATCCAACACACTA+TGG | + | chr3_1:21040586-21040605 | None:intergenic | 40.0% | |
| CATAGTGTGTTGGATGTGTT+AGG | - | chr3_1:21040584-21040603 | Msa0352300:intron | 40.0% | |
| !!! | GACAGTCTCTGAAGCTATTT+TGG | - | chr3_1:21040838-21040857 | Msa0352300:intron | 40.0% |
| ACACGATCCAATAGCCAAAA+GGG | + | chr3_1:21040919-21040938 | None:intergenic | 40.0% | |
| AACACGATCCAATAGCCAAA+AGG | + | chr3_1:21040920-21040939 | None:intergenic | 40.0% | |
| TCAACACGATCCAACCAAAA+GGG | + | chr3_1:21040960-21040979 | None:intergenic | 40.0% | |
| TTCAACACGATCCAACCAAA+AGG | + | chr3_1:21040961-21040980 | None:intergenic | 40.0% | |
| !!! | GACAGTCTCTGAAGCTATTT+TGG | - | chr3_1:21040838-21040857 | Msa0352300:intron | 40.0% |
| TTGCCACATATGCGTTGAGT+TGG | - | chr3_1:21039494-21039513 | Msa0352300:CDS | 45.0% | |
| !!! | GTTGGTGCCACTTTTGCAAA+AGG | - | chr3_1:21039529-21039548 | Msa0352300:CDS | 45.0% |
| !!! | TGGTGCCACTTTTGCAAAAG+GGG | - | chr3_1:21039531-21039550 | Msa0352300:CDS | 45.0% |
| ACAAAGGGTGGGAAAGAAGA+GGG | + | chr3_1:21039977-21039996 | None:intergenic | 45.0% | |
| AACAAAGGGTGGGAAAGAAG+AGG | + | chr3_1:21039978-21039997 | None:intergenic | 45.0% | |
| TCTCCTTCAAAGCCTTCTGA+AGG | - | chr3_1:21040114-21040133 | Msa0352300:intron | 45.0% | |
| ! | TTGAGCTTGGTGGCATAAGA+TGG | - | chr3_1:21040223-21040242 | Msa0352300:intron | 45.0% |
| ! | TGAGCTTGGTGGCATAAGAT+GGG | - | chr3_1:21040224-21040243 | Msa0352300:intron | 45.0% |
| GCATAAGATGGGGGTTCATT+GGG | - | chr3_1:21040235-21040254 | Msa0352300:intron | 45.0% | |
| CATAAGATGGGGGTTCATTG+GGG | - | chr3_1:21040236-21040255 | Msa0352300:intron | 45.0% | |
| ! | CATTGGGGTACCAACCTAAT+TGG | - | chr3_1:21040251-21040270 | Msa0352300:intron | 45.0% |
| GAAACACCGACATCCCAATT+AGG | + | chr3_1:21040268-21040287 | None:intergenic | 45.0% | |
| AGAAGAAAGGACAGGCATCA+AGG | + | chr3_1:21040292-21040311 | None:intergenic | 45.0% | |
| TTGATGCCTGTCCTTTCTTC+TGG | - | chr3_1:21040291-21040310 | Msa0352300:intron | 45.0% | |
| CATCCAACACACTATGGGTT+TGG | + | chr3_1:21040580-21040599 | None:intergenic | 45.0% | |
| TTCCTTGGTTACACGCTTCT+GGG | + | chr3_1:21040753-21040772 | None:intergenic | 45.0% | |
| !! | TAAGTGCCCCTTTTGGCTAT+TGG | - | chr3_1:21040909-21040928 | Msa0352300:intron | 45.0% |
| CACGATCCAATAGCCAAAAG+GGG | + | chr3_1:21040918-21040937 | None:intergenic | 45.0% | |
| CAACACGATCCAACCAAAAG+GGG | + | chr3_1:21040959-21040978 | None:intergenic | 45.0% | |
| TTCCTTGGTTACACGCTTCT+GGG | + | chr3_1:21040753-21040772 | None:intergenic | 45.0% | |
| TTGCCACATATGCGTTGAGT+TGG | - | chr3_1:21039494-21039513 | Msa0352300:CDS | 45.0% | |
| !!! | GTTGGTGCCACTTTTGCAAA+AGG | - | chr3_1:21039529-21039548 | Msa0352300:CDS | 45.0% |
| !!! | TGGTGCCACTTTTGCAAAAG+GGG | - | chr3_1:21039531-21039550 | Msa0352300:CDS | 45.0% |
| ACAAAGGGTGGGAAAGAAGA+GGG | + | chr3_1:21039977-21039996 | None:intergenic | 45.0% | |
| AACAAAGGGTGGGAAAGAAG+AGG | + | chr3_1:21039978-21039997 | None:intergenic | 45.0% | |
| TCTCCTTCAAAGCCTTCTGA+AGG | - | chr3_1:21040114-21040133 | Msa0352300:intron | 45.0% | |
| ! | TTGAGCTTGGTGGCATAAGA+TGG | - | chr3_1:21040223-21040242 | Msa0352300:intron | 45.0% |
| ! | TGAGCTTGGTGGCATAAGAT+GGG | - | chr3_1:21040224-21040243 | Msa0352300:intron | 45.0% |
| GCATAAGATGGGGGTTCATT+GGG | - | chr3_1:21040235-21040254 | Msa0352300:intron | 45.0% | |
| CATAAGATGGGGGTTCATTG+GGG | - | chr3_1:21040236-21040255 | Msa0352300:intron | 45.0% | |
| ! | CATTGGGGTACCAACCTAAT+TGG | - | chr3_1:21040251-21040270 | Msa0352300:intron | 45.0% |
| GAAACACCGACATCCCAATT+AGG | + | chr3_1:21040268-21040287 | None:intergenic | 45.0% | |
| AGAAGAAAGGACAGGCATCA+AGG | + | chr3_1:21040292-21040311 | None:intergenic | 45.0% | |
| TTGATGCCTGTCCTTTCTTC+TGG | - | chr3_1:21040291-21040310 | Msa0352300:intron | 45.0% | |
| CATCCAACACACTATGGGTT+TGG | + | chr3_1:21040580-21040599 | None:intergenic | 45.0% | |
| TTCCTTGGTTACACGCTTCT+GGG | + | chr3_1:21040753-21040772 | None:intergenic | 45.0% | |
| !! | TAAGTGCCCCTTTTGGCTAT+TGG | - | chr3_1:21040909-21040928 | Msa0352300:intron | 45.0% |
| CACGATCCAATAGCCAAAAG+GGG | + | chr3_1:21040918-21040937 | None:intergenic | 45.0% | |
| CAACACGATCCAACCAAAAG+GGG | + | chr3_1:21040959-21040978 | None:intergenic | 45.0% | |
| TTCCTTGGTTACACGCTTCT+GGG | + | chr3_1:21040753-21040772 | None:intergenic | 45.0% | |
| AGGGAAGCTGAACAAAGGGT+GGG | + | chr3_1:21039988-21040007 | None:intergenic | 50.0% | |
| TAGGGAAGCTGAACAAAGGG+TGG | + | chr3_1:21039989-21040008 | None:intergenic | 50.0% | |
| !! | GGCTTTGAAGGAGACTGAGA+TGG | + | chr3_1:21040108-21040127 | None:intergenic | 50.0% |
| ! | GAGCTTGGTGGCATAAGATG+GGG | - | chr3_1:21040225-21040244 | Msa0352300:intron | 50.0% |
| ! | AGCTTGGTGGCATAAGATGG+GGG | - | chr3_1:21040226-21040245 | Msa0352300:intron | 50.0% |
| GGCATAAGATGGGGGTTCAT+TGG | - | chr3_1:21040234-21040253 | Msa0352300:intron | 50.0% | |
| CACCGACATCCCAATTAGGT+TGG | + | chr3_1:21040264-21040283 | None:intergenic | 50.0% | |
| ! | GAAGGGTCCCCTGAAAGTAT+AGG | + | chr3_1:21040357-21040376 | None:intergenic | 50.0% |
| CCAACACACTATGGGTTTGG+AGG | + | chr3_1:21040577-21040596 | None:intergenic | 50.0% | |
| CCTCCAAACCCATAGTGTGT+TGG | - | chr3_1:21040574-21040593 | Msa0352300:intron | 50.0% | |
| ! | TTCCCAGAAGCGTGTAACCA+AGG | - | chr3_1:21040748-21040767 | Msa0352300:CDS | 50.0% |
| CTTCCTTGGTTACACGCTTC+TGG | + | chr3_1:21040754-21040773 | None:intergenic | 50.0% | |
| GCGCATCTCTTCAACTTCCT+TGG | + | chr3_1:21040768-21040787 | None:intergenic | 50.0% | |
| !! | GCTGCTTTAAGTGCCCCTTT+TGG | - | chr3_1:21040902-21040921 | Msa0352300:intron | 50.0% |
| ! | AAGCGCTTAAGTGCCCCTTT+TGG | - | chr3_1:21040943-21040962 | Msa0352300:intron | 50.0% |
| ! | GCTTAAGTGCCCCTTTTGGT+TGG | - | chr3_1:21040947-21040966 | Msa0352300:intron | 50.0% |
| ! | TTCCCAGAAGCGTGTAACCA+AGG | - | chr3_1:21040748-21040767 | Msa0352300:CDS | 50.0% |
| CTTCCTTGGTTACACGCTTC+TGG | + | chr3_1:21040754-21040773 | None:intergenic | 50.0% | |
| GCGCATCTCTTCAACTTCCT+TGG | + | chr3_1:21040768-21040787 | None:intergenic | 50.0% | |
| AGGGAAGCTGAACAAAGGGT+GGG | + | chr3_1:21039988-21040007 | None:intergenic | 50.0% | |
| TAGGGAAGCTGAACAAAGGG+TGG | + | chr3_1:21039989-21040008 | None:intergenic | 50.0% | |
| !! | GGCTTTGAAGGAGACTGAGA+TGG | + | chr3_1:21040108-21040127 | None:intergenic | 50.0% |
| ! | GAGCTTGGTGGCATAAGATG+GGG | - | chr3_1:21040225-21040244 | Msa0352300:intron | 50.0% |
| ! | AGCTTGGTGGCATAAGATGG+GGG | - | chr3_1:21040226-21040245 | Msa0352300:intron | 50.0% |
| GGCATAAGATGGGGGTTCAT+TGG | - | chr3_1:21040234-21040253 | Msa0352300:intron | 50.0% | |
| CACCGACATCCCAATTAGGT+TGG | + | chr3_1:21040264-21040283 | None:intergenic | 50.0% | |
| ! | GAAGGGTCCCCTGAAAGTAT+AGG | + | chr3_1:21040357-21040376 | None:intergenic | 50.0% |
| CCAACACACTATGGGTTTGG+AGG | + | chr3_1:21040577-21040596 | None:intergenic | 50.0% | |
| CCTCCAAACCCATAGTGTGT+TGG | - | chr3_1:21040574-21040593 | Msa0352300:intron | 50.0% | |
| ! | TTCCCAGAAGCGTGTAACCA+AGG | - | chr3_1:21040748-21040767 | Msa0352300:CDS | 50.0% |
| CTTCCTTGGTTACACGCTTC+TGG | + | chr3_1:21040754-21040773 | None:intergenic | 50.0% | |
| GCGCATCTCTTCAACTTCCT+TGG | + | chr3_1:21040768-21040787 | None:intergenic | 50.0% | |
| !! | GCTGCTTTAAGTGCCCCTTT+TGG | - | chr3_1:21040902-21040921 | Msa0352300:intron | 50.0% |
| ! | AAGCGCTTAAGTGCCCCTTT+TGG | - | chr3_1:21040943-21040962 | Msa0352300:intron | 50.0% |
| ! | GCTTAAGTGCCCCTTTTGGT+TGG | - | chr3_1:21040947-21040966 | Msa0352300:intron | 50.0% |
| ! | TTCCCAGAAGCGTGTAACCA+AGG | - | chr3_1:21040748-21040767 | Msa0352300:CDS | 50.0% |
| CTTCCTTGGTTACACGCTTC+TGG | + | chr3_1:21040754-21040773 | None:intergenic | 50.0% | |
| GCGCATCTCTTCAACTTCCT+TGG | + | chr3_1:21040768-21040787 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 21039469 | 21041184 | 21039469 | ID=Msa0352300;Name=Msa0352300 |
| chr3_1 | mRNA | 21039469 | 21041184 | 21039469 | ID=Msa0352300-mRNA-1;Parent=Msa0352300;Name=Msa0352300-mRNA-1;_AED=0.40;_eAED=0.40;_QI=0|0|0|0.66|0.4|0.33|6|0|259 |
| chr3_1 | exon | 21041095 | 21041184 | 21041095 | ID=Msa0352300-mRNA-1:exon:4748;Parent=Msa0352300-mRNA-1 |
| chr3_1 | exon | 21040883 | 21040891 | 21040883 | ID=Msa0352300-mRNA-1:exon:4747;Parent=Msa0352300-mRNA-1 |
| chr3_1 | exon | 21040729 | 21040823 | 21040729 | ID=Msa0352300-mRNA-1:exon:4746;Parent=Msa0352300-mRNA-1 |
| chr3_1 | exon | 21040125 | 21040234 | 21040125 | ID=Msa0352300-mRNA-1:exon:4745;Parent=Msa0352300-mRNA-1 |
| chr3_1 | exon | 21039767 | 21040011 | 21039767 | ID=Msa0352300-mRNA-1:exon:4744;Parent=Msa0352300-mRNA-1 |
| chr3_1 | exon | 21039469 | 21039699 | 21039469 | ID=Msa0352300-mRNA-1:exon:4743;Parent=Msa0352300-mRNA-1 |
| chr3_1 | CDS | 21041095 | 21041184 | 21041095 | ID=Msa0352300-mRNA-1:cds;Parent=Msa0352300-mRNA-1 |
| chr3_1 | CDS | 21040883 | 21040891 | 21040883 | ID=Msa0352300-mRNA-1:cds;Parent=Msa0352300-mRNA-1 |
| chr3_1 | CDS | 21040729 | 21040823 | 21040729 | ID=Msa0352300-mRNA-1:cds;Parent=Msa0352300-mRNA-1 |
| chr3_1 | CDS | 21040125 | 21040234 | 21040125 | ID=Msa0352300-mRNA-1:cds;Parent=Msa0352300-mRNA-1 |
| chr3_1 | CDS | 21039767 | 21040011 | 21039767 | ID=Msa0352300-mRNA-1:cds;Parent=Msa0352300-mRNA-1 |
| chr3_1 | CDS | 21039469 | 21039699 | 21039469 | ID=Msa0352300-mRNA-1:cds;Parent=Msa0352300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
