Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0352280 | MCI24214.1 | 51.724 | 116 | 51 | 2 | 146 | 256 | 22 | 137 | 2.75e-23 | 102 |
Msa0352280 | MCI24214.1 | 65.385 | 130 | 33 | 1 | 66 | 183 | 10 | 139 | 9.63e-46 | 160 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0352280 | A0A392QJZ9 | 51.724 | 116 | 51 | 2 | 146 | 256 | 22 | 137 | 1.31e-23 | 102 |
Msa0352280 | A0A392QJZ9 | 65.385 | 130 | 33 | 1 | 66 | 183 | 10 | 139 | 4.60e-46 | 160 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0137330 | Msa0352280 | 0.804845 | 1.776740e-49 | -8.615850e-47 |
Msa0352280 | Msa0352300 | 0.914512 | 1.758294e-84 | -8.615850e-47 |
Msa0352280 | Msa0533290 | 0.800392 | 1.472442e-48 | -8.615850e-47 |
Msa0352280 | Msa0533430 | 0.808246 | 3.403137e-50 | -8.615850e-47 |
Msa0352280 | Msa0818010 | 0.814764 | 1.305095e-51 | -8.615850e-47 |
Msa0352280 | Msa0818030 | 0.868074 | 8.553711e-66 | -8.615850e-47 |
Msa0352280 | Msa0858360 | 0.831544 | 1.571534e-55 | -8.615850e-47 |
Msa0352280 | Msa0884920 | 0.810185 | 1.306834e-50 | -8.615850e-47 |
Msa0352280 | Msa0902020 | 0.839738 | 1.324369e-57 | -8.615850e-47 |
Msa0352280 | Msa0912500 | 0.828623 | 8.111148e-55 | -8.615850e-47 |
Msa0352280 | Msa1006250 | 0.821683 | 3.543611e-53 | -8.615850e-47 |
Msa0352280 | Msa1359820 | 0.833812 | 4.300059e-56 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0352280 | MtrunA17_Chr3g0107931 | 46.058 | 241 | 47 | 3 | 26 | 183 | 1633 | 1873 | 6.57e-48 | 170 |
Msa0352280 | MtrunA17_Chr3g0108171 | 43.494 | 269 | 41 | 6 | 26 | 183 | 1685 | 1953 | 2.37e-46 | 165 |
Msa0352280 | MtrunA17_Chr3g0096771 | 56.618 | 136 | 42 | 1 | 66 | 184 | 141 | 276 | 6.99e-42 | 144 |
Msa0352280 | MtrunA17_Chr3g0096771 | 64.286 | 70 | 25 | 0 | 187 | 256 | 204 | 273 | 1.21e-21 | 91.3 |
Msa0352280 | MtrunA17_Chr3g0105471 | 50.955 | 157 | 37 | 1 | 66 | 182 | 82 | 238 | 1.41e-41 | 142 |
Msa0352280 | MtrunA17_Chr2g0304131 | 49.367 | 158 | 40 | 1 | 66 | 183 | 144 | 301 | 3.13e-39 | 138 |
Msa0352280 | MtrunA17_Chr3g0107641 | 49.686 | 159 | 40 | 1 | 65 | 183 | 20 | 178 | 3.58e-36 | 127 |
Msa0352280 | MtrunA17_Chr3g0108151 | 48.408 | 157 | 41 | 1 | 66 | 182 | 1379 | 1535 | 8.00e-36 | 135 |
Msa0352280 | MtrunA17_Chr3g0107261 | 45.283 | 159 | 47 | 1 | 66 | 184 | 228 | 386 | 8.70e-34 | 126 |
Msa0352280 | MtrunA17_Chr3g0108821 | 47.561 | 164 | 39 | 2 | 66 | 182 | 1631 | 1794 | 3.51e-33 | 127 |
Msa0352280 | MtrunA17_Chr3g0112521 | 77.027 | 74 | 17 | 0 | 186 | 259 | 5 | 78 | 4.11e-33 | 115 |
Msa0352280 | MtrunA17_Chr3g0112521 | 78.873 | 71 | 15 | 0 | 112 | 182 | 6 | 76 | 7.92e-33 | 115 |
Msa0352280 | MtrunA17_Chr3g0105521 | 47.771 | 157 | 37 | 2 | 66 | 182 | 1446 | 1597 | 6.11e-32 | 124 |
Msa0352280 | MtrunA17_Chr3g0097011 | 35.115 | 262 | 52 | 5 | 26 | 183 | 136 | 383 | 1.55e-30 | 117 |
Msa0352280 | MtrunA17_Chr3g0091861 | 45.912 | 159 | 32 | 2 | 65 | 183 | 1715 | 1859 | 1.84e-30 | 119 |
Msa0352280 | MtrunA17_Chr3g0107171 | 43.258 | 178 | 64 | 4 | 41 | 183 | 194 | 369 | 3.54e-30 | 116 |
Msa0352280 | MtrunA17_Chr3g0107171 | 64.286 | 70 | 25 | 0 | 187 | 256 | 298 | 367 | 1.77e-21 | 92.4 |
Msa0352280 | MtrunA17_Chr3g0087641 | 55.172 | 116 | 12 | 1 | 65 | 140 | 231 | 346 | 6.08e-30 | 115 |
Msa0352280 | MtrunA17_Chr3g0108811 | 46.012 | 163 | 37 | 3 | 66 | 186 | 1775 | 1928 | 7.17e-30 | 118 |
Msa0352280 | MtrunA17_Chr7g0223911 | 62.195 | 82 | 31 | 0 | 101 | 182 | 71 | 152 | 8.98e-30 | 109 |
Msa0352280 | MtrunA17_Chr7g0223911 | 61.429 | 70 | 27 | 0 | 187 | 256 | 82 | 151 | 2.28e-22 | 90.5 |
Msa0352280 | MtrunA17_Chr3g0105591 | 44.785 | 163 | 43 | 2 | 66 | 181 | 264 | 426 | 1.10e-29 | 115 |
Msa0352280 | MtrunA17_Chr3g0105551 | 43.293 | 164 | 46 | 2 | 66 | 182 | 1693 | 1856 | 2.38e-29 | 116 |
Msa0352280 | MtrunA17_Chr3g0108761 | 42.767 | 159 | 37 | 2 | 65 | 183 | 22 | 166 | 5.64e-28 | 105 |
Msa0352280 | MtrunA17_Chr3g0091851 | 42.138 | 159 | 37 | 3 | 65 | 183 | 1158 | 1301 | 2.23e-24 | 102 |
Msa0352280 | MtrunA17_Chr3g0108091 | 40.972 | 144 | 31 | 2 | 65 | 168 | 370 | 499 | 2.61e-21 | 92.8 |
Msa0352280 | MtrunA17_Chr3g0108071 | 40.972 | 144 | 31 | 2 | 65 | 168 | 833 | 962 | 5.14e-21 | 92.0 |
Msa0352280 | MtrunA17_Chr3g0109131 | 68.254 | 63 | 20 | 0 | 122 | 184 | 97 | 159 | 7.78e-21 | 86.7 |
Msa0352280 | MtrunA17_Chr3g0109131 | 68.333 | 60 | 19 | 0 | 197 | 256 | 97 | 156 | 2.60e-18 | 79.7 |
Msa0352280 | MtrunA17_Chr7g0229711 | 38.095 | 147 | 42 | 3 | 70 | 183 | 7 | 137 | 7.55e-17 | 75.1 |
Msa0352280 | MtrunA17_Chr3g0105491 | 51.562 | 64 | 24 | 1 | 200 | 256 | 1 | 64 | 2.94e-11 | 58.2 |
Msa0352280 | MtrunA17_Chr3g0105491 | 50.769 | 65 | 25 | 1 | 125 | 182 | 1 | 65 | 4.89e-11 | 57.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 32 sgRNAs with CRISPR-Local
Find 242 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GACAGTCTCTGAAGCTATTT+TGG | 0.152194 | 3_1:-21007276 | Msa0352280:CDS |
GACAGTCTCTGAAGCTATTT+TGG | 0.152194 | 3_1:-21007568 | Msa0352280:CDS |
TTACAAGATGTTCGCAAATT+TGG | 0.202388 | 3_1:-21007771 | Msa0352280:intron |
CTTCCTTGGTTACACGCTTC+TGG | 0.219273 | 3_1:+21007363 | None:intergenic |
CTTCCTTGGTTACACGCTTC+TGG | 0.219273 | 3_1:+21007655 | None:intergenic |
AAATGCATTGCAAAAGCTAT+TGG | 0.277807 | 3_1:-21007390 | Msa0352280:CDS |
AAATGCATTGCAAAAGCTAT+TGG | 0.277807 | 3_1:-21007682 | Msa0352280:CDS |
ATCAGTAGCTAAATGATTCT+TGG | 0.290113 | 3_1:+21007967 | None:intergenic |
TGATCAAGGTGAAGACTCTT+TGG | 0.310630 | 3_1:-21008509 | Msa0352280:CDS |
TTCCTTGGTTACACGCTTCT+GGG | 0.371059 | 3_1:+21007364 | None:intergenic |
TTCCTTGGTTACACGCTTCT+GGG | 0.371059 | 3_1:+21007656 | None:intergenic |
CGTTGAGTTGGTTAGAATTG+AGG | 0.419380 | 3_1:-21008901 | Msa0352280:CDS |
GCGCATCTCTTCAACTTCCT+TGG | 0.433951 | 3_1:+21007349 | None:intergenic |
GCGCATCTCTTCAACTTCCT+TGG | 0.433951 | 3_1:+21007641 | None:intergenic |
GTTGAGTTGGTTAGAATTGA+GGG | 0.451282 | 3_1:-21008900 | Msa0352280:CDS |
GCGTCCGTTAAAAGAATTGA+AGG | 0.452394 | 3_1:+21007908 | None:intergenic |
AAGCGCTTAAGTGCCCCTTT+TGG | 0.454685 | 3_1:-21007463 | Msa0352280:intron |
AAGATGTTGATGTTAAAATC+TGG | 0.466817 | 3_1:-21008555 | Msa0352280:CDS |
TCAACACGATCCAACCAAAA+GGG | 0.478404 | 3_1:+21007449 | None:intergenic |
TTCAACACGATCCAACCAAA+AGG | 0.483684 | 3_1:+21007448 | None:intergenic |
AGTAACACTAATATTGATCA+AGG | 0.544327 | 3_1:-21008523 | Msa0352280:CDS |
TTGCCACATATGCGTTGAGT+TGG | 0.544855 | 3_1:-21008913 | Msa0352280:CDS |
TGTTGATGTTAAAATCTGGC+AGG | 0.560410 | 3_1:-21008551 | Msa0352280:CDS |
TAACCAACTCAACGCATATG+TGG | 0.569365 | 3_1:+21008910 | None:intergenic |
TTTAACATCAACATCTTGAG+TGG | 0.573990 | 3_1:+21008561 | None:intergenic |
AGTTGGTTAGAATTGAGGGT+TGG | 0.574818 | 3_1:-21008896 | Msa0352280:CDS |
CAACACGATCCAACCAAAAG+GGG | 0.588997 | 3_1:+21007450 | None:intergenic |
TAACACTTTGAATCGACATG+TGG | 0.607054 | 3_1:-21007318 | Msa0352280:CDS |
TTCCCAGAAGCGTGTAACCA+AGG | 0.623541 | 3_1:-21007366 | Msa0352280:CDS |
TTCCCAGAAGCGTGTAACCA+AGG | 0.623541 | 3_1:-21007658 | Msa0352280:CDS |
TAACACTTTGAATCGACATG+TGG | 0.634653 | 3_1:-21007610 | Msa0352280:CDS |
GAATTGAAGGATGCTTAACA+AGG | 0.637134 | 3_1:+21007921 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTATTATAGAAAAAGAAAAT+AGG | + | chr3_1:21007469-21007488 | None:intergenic | 10.0% |
!!! | TATTTTTTTTTTATCGTTAA+TGG | - | chr3_1:21007912-21007931 | Msa0352280:CDS | 10.0% |
!! | TTATTATAGAAAAAGAAAAT+AGG | + | chr3_1:21007469-21007488 | None:intergenic | 10.0% |
!!! | TATTTTTTTTTTATCGTTAA+TGG | - | chr3_1:21007912-21007931 | Msa0352280:CDS | 10.0% |
!!! | ATAGTAAGTTTTTTTTTTGA+AGG | - | chr3_1:21007515-21007534 | Msa0352280:intron | 15.0% |
!! | TCATGAATTCTTAATATTAT+AGG | + | chr3_1:21007555-21007574 | None:intergenic | 15.0% |
!!! | TTCTTTTAAATGAATTTTGT+AGG | - | chr3_1:21007583-21007602 | Msa0352280:CDS | 15.0% |
!!! | TTTTGAGAAAATTTTAAATC+AGG | + | chr3_1:21008483-21008502 | None:intergenic | 15.0% |
!!! | TTTTGAGAAAATTTTAAATC+AGG | + | chr3_1:21008483-21008502 | None:intergenic | 15.0% |
!!! | ATAGTAAGTTTTTTTTTTGA+AGG | - | chr3_1:21007515-21007534 | Msa0352280:intron | 15.0% |
!! | TCATGAATTCTTAATATTAT+AGG | + | chr3_1:21007555-21007574 | None:intergenic | 15.0% |
!!! | TTCTTTTAAATGAATTTTGT+AGG | - | chr3_1:21007583-21007602 | Msa0352280:CDS | 15.0% |
!!! | TTTTGAGAAAATTTTAAATC+AGG | + | chr3_1:21008483-21008502 | None:intergenic | 15.0% |
!!! | TTTTGAGAAAATTTTAAATC+AGG | + | chr3_1:21008483-21008502 | None:intergenic | 15.0% |
!! | ATCAAAATGACTCTTATAAA+TGG | + | chr3_1:21007384-21007403 | None:intergenic | 20.0% |
!! | TGATATAAAGAGAACATAAT+TGG | - | chr3_1:21007400-21007419 | Msa0352280:CDS | 20.0% |
!! | TAATAAAGTAAGCTTACTTT+AGG | - | chr3_1:21007483-21007502 | Msa0352280:intron | 20.0% |
!!! | TTTTTTTTTGAAGGATAGTA+AGG | - | chr3_1:21007524-21007543 | Msa0352280:intron | 20.0% |
!! | AAAAAAAAAATACCTTCAGA+AGG | + | chr3_1:21007904-21007923 | None:intergenic | 20.0% |
!!! | TTTTTTTTATCGTTAATGGA+TGG | - | chr3_1:21007916-21007935 | Msa0352280:CDS | 20.0% |
!!! | AAAAAACAAAATTTTGAGCT+TGG | - | chr3_1:21007986-21008005 | Msa0352280:CDS | 20.0% |
!!! | TTATTTTTTCCTATACTTTC+AGG | - | chr3_1:21008121-21008140 | Msa0352280:intron | 20.0% |
!!! | TATTTTTTCCTATACTTTCA+GGG | - | chr3_1:21008122-21008141 | Msa0352280:intron | 20.0% |
!! | AATCTTCATATATTTGAGAA+GGG | + | chr3_1:21008150-21008169 | None:intergenic | 20.0% |
!! | AAATCTTCATATATTTGAGA+AGG | + | chr3_1:21008151-21008170 | None:intergenic | 20.0% |
!! | ATCAAAATGACTCTTATAAA+TGG | + | chr3_1:21007384-21007403 | None:intergenic | 20.0% |
!! | TGATATAAAGAGAACATAAT+TGG | - | chr3_1:21007400-21007419 | Msa0352280:CDS | 20.0% |
!! | TAATAAAGTAAGCTTACTTT+AGG | - | chr3_1:21007483-21007502 | Msa0352280:intron | 20.0% |
!!! | TTTTTTTTTGAAGGATAGTA+AGG | - | chr3_1:21007524-21007543 | Msa0352280:intron | 20.0% |
!! | AAAAAAAAAATACCTTCAGA+AGG | + | chr3_1:21007904-21007923 | None:intergenic | 20.0% |
!!! | TTTTTTTTATCGTTAATGGA+TGG | - | chr3_1:21007916-21007935 | Msa0352280:CDS | 20.0% |
!!! | AAAAAACAAAATTTTGAGCT+TGG | - | chr3_1:21007986-21008005 | Msa0352280:CDS | 20.0% |
!!! | TTATTTTTTCCTATACTTTC+AGG | - | chr3_1:21008121-21008140 | Msa0352280:intron | 20.0% |
!!! | TATTTTTTCCTATACTTTCA+GGG | - | chr3_1:21008122-21008141 | Msa0352280:intron | 20.0% |
!! | AATCTTCATATATTTGAGAA+GGG | + | chr3_1:21008150-21008169 | None:intergenic | 20.0% |
!! | AAATCTTCATATATTTGAGA+AGG | + | chr3_1:21008151-21008170 | None:intergenic | 20.0% |
!! | AAATGAATTTTGTAGGAAGA+TGG | - | chr3_1:21007590-21007609 | Msa0352280:CDS | 25.0% |
! | AAGATGTTGATGTTAAAATC+TGG | - | chr3_1:21007627-21007646 | Msa0352280:CDS | 25.0% |
! | AGTAACACTAATATTGATCA+AGG | - | chr3_1:21007659-21007678 | Msa0352280:CDS | 25.0% |
! | ACTAATATTTCTTCATCCTT+AGG | + | chr3_1:21007835-21007854 | None:intergenic | 25.0% |
! | AGAGAAAAATATGTACAAGA+GGG | + | chr3_1:21007957-21007976 | None:intergenic | 25.0% |
! | AAGAGAAAAATATGTACAAG+AGG | + | chr3_1:21007958-21007977 | None:intergenic | 25.0% |
!! | TTTTTACTAAACCAGAAGAA+AGG | + | chr3_1:21008081-21008100 | None:intergenic | 25.0% |
!!! | ATTTTTTCCTATACTTTCAG+GGG | - | chr3_1:21008123-21008142 | Msa0352280:intron | 25.0% |
! | TGAAGATTTAAGCTCTTATT+TGG | - | chr3_1:21008162-21008181 | Msa0352280:intron | 25.0% |
! | TTCACTAAGTAATAGATACA+AGG | - | chr3_1:21008297-21008316 | Msa0352280:intron | 25.0% |
! | TCACTAAGTAATAGATACAA+GGG | - | chr3_1:21008298-21008317 | Msa0352280:intron | 25.0% |
! | ATAACTCAACAAATTCAGAT+GGG | + | chr3_1:21008392-21008411 | None:intergenic | 25.0% |
! | AATAACTCAACAAATTCAGA+TGG | + | chr3_1:21008393-21008412 | None:intergenic | 25.0% |
!!! | AATTTGGTTTTGATAAGGAT+TGG | - | chr3_1:21008427-21008446 | Msa0352280:intron | 25.0% |
!!! | AACACAAGTTTTAGAAACTA+AGG | - | chr3_1:21008656-21008675 | Msa0352280:intron | 25.0% |
!! | AAATGAATTTTGTAGGAAGA+TGG | - | chr3_1:21007590-21007609 | Msa0352280:CDS | 25.0% |
! | AAGATGTTGATGTTAAAATC+TGG | - | chr3_1:21007627-21007646 | Msa0352280:CDS | 25.0% |
! | AGTAACACTAATATTGATCA+AGG | - | chr3_1:21007659-21007678 | Msa0352280:CDS | 25.0% |
! | ACTAATATTTCTTCATCCTT+AGG | + | chr3_1:21007835-21007854 | None:intergenic | 25.0% |
! | AGAGAAAAATATGTACAAGA+GGG | + | chr3_1:21007957-21007976 | None:intergenic | 25.0% |
! | AAGAGAAAAATATGTACAAG+AGG | + | chr3_1:21007958-21007977 | None:intergenic | 25.0% |
!! | TTTTTACTAAACCAGAAGAA+AGG | + | chr3_1:21008081-21008100 | None:intergenic | 25.0% |
!!! | ATTTTTTCCTATACTTTCAG+GGG | - | chr3_1:21008123-21008142 | Msa0352280:intron | 25.0% |
! | TGAAGATTTAAGCTCTTATT+TGG | - | chr3_1:21008162-21008181 | Msa0352280:intron | 25.0% |
! | TTCACTAAGTAATAGATACA+AGG | - | chr3_1:21008297-21008316 | Msa0352280:intron | 25.0% |
! | TCACTAAGTAATAGATACAA+GGG | - | chr3_1:21008298-21008317 | Msa0352280:intron | 25.0% |
! | ATAACTCAACAAATTCAGAT+GGG | + | chr3_1:21008392-21008411 | None:intergenic | 25.0% |
! | AATAACTCAACAAATTCAGA+TGG | + | chr3_1:21008393-21008412 | None:intergenic | 25.0% |
!!! | AATTTGGTTTTGATAAGGAT+TGG | - | chr3_1:21008427-21008446 | Msa0352280:intron | 25.0% |
!!! | AACACAAGTTTTAGAAACTA+AGG | - | chr3_1:21008656-21008675 | Msa0352280:intron | 25.0% |
TTTAACATCAACATCTTGAG+TGG | + | chr3_1:21007624-21007643 | None:intergenic | 30.0% | |
TCAAAATGAAAAGGCTAATG+AGG | + | chr3_1:21007722-21007741 | None:intergenic | 30.0% | |
GGTTCAACTTCAAAATGAAA+AGG | + | chr3_1:21007731-21007750 | None:intergenic | 30.0% | |
AATACAAGAGAGTCTTGATT+TGG | + | chr3_1:21007860-21007879 | None:intergenic | 30.0% | |
!! | TTATCGTTAATGGATGGTTT+TGG | - | chr3_1:21007922-21007941 | Msa0352280:CDS | 30.0% |
AAAAATATGTACAAGAGGGT+GGG | + | chr3_1:21007953-21007972 | None:intergenic | 30.0% | |
! | AAACAAAATTTTGAGCTTGG+TGG | - | chr3_1:21007989-21008008 | Msa0352280:CDS | 30.0% |
ATCAGTAGCTAAATGATTCT+TGG | + | chr3_1:21008218-21008237 | None:intergenic | 30.0% | |
! | GCATCCTTCAATTCTTTTAA+CGG | - | chr3_1:21008270-21008289 | Msa0352280:intron | 30.0% |
ATTTCAATAGCTACAGTTGT+AGG | + | chr3_1:21008329-21008348 | None:intergenic | 30.0% | |
TTACAAGATGTTCGCAAATT+TGG | - | chr3_1:21008411-21008430 | Msa0352280:intron | 30.0% | |
!!! | TCGCAAATTTGGTTTTGATA+AGG | - | chr3_1:21008422-21008441 | Msa0352280:intron | 30.0% |
AAATGCATTGCAAAAGCTAT+TGG | - | chr3_1:21008500-21008519 | Msa0352280:intron | 30.0% | |
AAATGCATTGCAAAAGCTAT+TGG | - | chr3_1:21008500-21008519 | Msa0352280:intron | 30.0% | |
TTTAACATCAACATCTTGAG+TGG | + | chr3_1:21007624-21007643 | None:intergenic | 30.0% | |
TCAAAATGAAAAGGCTAATG+AGG | + | chr3_1:21007722-21007741 | None:intergenic | 30.0% | |
GGTTCAACTTCAAAATGAAA+AGG | + | chr3_1:21007731-21007750 | None:intergenic | 30.0% | |
AATACAAGAGAGTCTTGATT+TGG | + | chr3_1:21007860-21007879 | None:intergenic | 30.0% | |
!! | TTATCGTTAATGGATGGTTT+TGG | - | chr3_1:21007922-21007941 | Msa0352280:CDS | 30.0% |
AAAAATATGTACAAGAGGGT+GGG | + | chr3_1:21007953-21007972 | None:intergenic | 30.0% | |
! | AAACAAAATTTTGAGCTTGG+TGG | - | chr3_1:21007989-21008008 | Msa0352280:CDS | 30.0% |
ATCAGTAGCTAAATGATTCT+TGG | + | chr3_1:21008218-21008237 | None:intergenic | 30.0% | |
! | GCATCCTTCAATTCTTTTAA+CGG | - | chr3_1:21008270-21008289 | Msa0352280:intron | 30.0% |
ATTTCAATAGCTACAGTTGT+AGG | + | chr3_1:21008329-21008348 | None:intergenic | 30.0% | |
TTACAAGATGTTCGCAAATT+TGG | - | chr3_1:21008411-21008430 | Msa0352280:intron | 30.0% | |
!!! | TCGCAAATTTGGTTTTGATA+AGG | - | chr3_1:21008422-21008441 | Msa0352280:intron | 30.0% |
AAATGCATTGCAAAAGCTAT+TGG | - | chr3_1:21008500-21008519 | Msa0352280:intron | 30.0% | |
AAATGCATTGCAAAAGCTAT+TGG | - | chr3_1:21008500-21008519 | Msa0352280:intron | 30.0% | |
!! | GTTGAGTTGGTTAGAATTGA+GGG | - | chr3_1:21007282-21007301 | Msa0352280:CDS | 35.0% |
! | TTTATCCCCTTTTGCAAAAG+TGG | + | chr3_1:21007314-21007333 | None:intergenic | 35.0% |
TGTTGATGTTAAAATCTGGC+AGG | - | chr3_1:21007631-21007650 | Msa0352280:CDS | 35.0% | |
ATTTAGGGAAGCTGAACAAA+GGG | + | chr3_1:21007767-21007786 | None:intergenic | 35.0% | |
CATGACAGCATCATCATTTA+GGG | + | chr3_1:21007782-21007801 | None:intergenic | 35.0% | |
TCATGACAGCATCATCATTT+AGG | + | chr3_1:21007783-21007802 | None:intergenic | 35.0% | |
GAAAGTAAGCTCAGATATTC+AGG | - | chr3_1:21007801-21007820 | Msa0352280:intron | 35.0% | |
TATTCAGGATGAGTTTCCTA+AGG | - | chr3_1:21007816-21007835 | Msa0352280:intron | 35.0% | |
GAAAAATATGTACAAGAGGG+TGG | + | chr3_1:21007954-21007973 | None:intergenic | 35.0% | |
! | CTCTTATTTGGTTGTCACAA+GGG | - | chr3_1:21008174-21008193 | Msa0352280:intron | 35.0% |
GAATTGAAGGATGCTTAACA+AGG | + | chr3_1:21008264-21008283 | None:intergenic | 35.0% | |
TAACACATCCAACACACTAT+GGG | + | chr3_1:21008361-21008380 | None:intergenic | 35.0% | |
!!! | TGGTTTTGATAAGGATTGGT+TGG | - | chr3_1:21008431-21008450 | Msa0352280:intron | 35.0% |
TAACACTTTGAATCGACATG+TGG | - | chr3_1:21008572-21008591 | Msa0352280:CDS | 35.0% | |
TAACACTTTGAATCGACATG+TGG | - | chr3_1:21008572-21008591 | Msa0352280:CDS | 35.0% | |
!! | GTTGAGTTGGTTAGAATTGA+GGG | - | chr3_1:21007282-21007301 | Msa0352280:CDS | 35.0% |
! | TTTATCCCCTTTTGCAAAAG+TGG | + | chr3_1:21007314-21007333 | None:intergenic | 35.0% |
TGTTGATGTTAAAATCTGGC+AGG | - | chr3_1:21007631-21007650 | Msa0352280:CDS | 35.0% | |
ATTTAGGGAAGCTGAACAAA+GGG | + | chr3_1:21007767-21007786 | None:intergenic | 35.0% | |
CATGACAGCATCATCATTTA+GGG | + | chr3_1:21007782-21007801 | None:intergenic | 35.0% | |
TCATGACAGCATCATCATTT+AGG | + | chr3_1:21007783-21007802 | None:intergenic | 35.0% | |
GAAAGTAAGCTCAGATATTC+AGG | - | chr3_1:21007801-21007820 | Msa0352280:intron | 35.0% | |
TATTCAGGATGAGTTTCCTA+AGG | - | chr3_1:21007816-21007835 | Msa0352280:intron | 35.0% | |
GAAAAATATGTACAAGAGGG+TGG | + | chr3_1:21007954-21007973 | None:intergenic | 35.0% | |
! | CTCTTATTTGGTTGTCACAA+GGG | - | chr3_1:21008174-21008193 | Msa0352280:intron | 35.0% |
GAATTGAAGGATGCTTAACA+AGG | + | chr3_1:21008264-21008283 | None:intergenic | 35.0% | |
TAACACATCCAACACACTAT+GGG | + | chr3_1:21008361-21008380 | None:intergenic | 35.0% | |
!!! | TGGTTTTGATAAGGATTGGT+TGG | - | chr3_1:21008431-21008450 | Msa0352280:intron | 35.0% |
TAACACTTTGAATCGACATG+TGG | - | chr3_1:21008572-21008591 | Msa0352280:CDS | 35.0% | |
TAACACTTTGAATCGACATG+TGG | - | chr3_1:21008572-21008591 | Msa0352280:CDS | 35.0% | |
TAACCAACTCAACGCATATG+TGG | + | chr3_1:21007275-21007294 | None:intergenic | 40.0% | |
!! | CGTTGAGTTGGTTAGAATTG+AGG | - | chr3_1:21007281-21007300 | Msa0352280:CDS | 40.0% |
AGTTGGTTAGAATTGAGGGT+TGG | - | chr3_1:21007286-21007305 | Msa0352280:CDS | 40.0% | |
!!! | TTGGTGCCACTTTTGCAAAA+GGG | - | chr3_1:21007305-21007324 | Msa0352280:CDS | 40.0% |
TGATCAAGGTGAAGACTCTT+TGG | - | chr3_1:21007673-21007692 | Msa0352280:CDS | 40.0% | |
CATTTAGGGAAGCTGAACAA+AGG | + | chr3_1:21007768-21007787 | None:intergenic | 40.0% | |
! | ATACCTTCAGAAGGCTTTGA+AGG | + | chr3_1:21007895-21007914 | None:intergenic | 40.0% |
! | ATTGGGGTACCAACCTAATT+GGG | - | chr3_1:21008028-21008047 | Msa0352280:intron | 40.0% |
TACCAACCTAATTGGGATGT+CGG | - | chr3_1:21008035-21008054 | Msa0352280:intron | 40.0% | |
ACTAAACCAGAAGAAAGGAC+AGG | + | chr3_1:21008076-21008095 | None:intergenic | 40.0% | |
! | GCTCTTATTTGGTTGTCACA+AGG | - | chr3_1:21008173-21008192 | Msa0352280:intron | 40.0% |
GCGTCCGTTAAAAGAATTGA+AGG | + | chr3_1:21008277-21008296 | None:intergenic | 40.0% | |
CTAACACATCCAACACACTA+TGG | + | chr3_1:21008362-21008381 | None:intergenic | 40.0% | |
CATAGTGTGTTGGATGTGTT+AGG | - | chr3_1:21008360-21008379 | Msa0352280:intron | 40.0% | |
!!! | GACAGTCTCTGAAGCTATTT+TGG | - | chr3_1:21008614-21008633 | Msa0352280:intron | 40.0% |
ACACGATCCAATAGCCAAAA+GGG | + | chr3_1:21008695-21008714 | None:intergenic | 40.0% | |
AACACGATCCAATAGCCAAA+AGG | + | chr3_1:21008696-21008715 | None:intergenic | 40.0% | |
TCAACACGATCCAACCAAAA+GGG | + | chr3_1:21008736-21008755 | None:intergenic | 40.0% | |
TTCAACACGATCCAACCAAA+AGG | + | chr3_1:21008737-21008756 | None:intergenic | 40.0% | |
!!! | GACAGTCTCTGAAGCTATTT+TGG | - | chr3_1:21008614-21008633 | Msa0352280:intron | 40.0% |
TAACCAACTCAACGCATATG+TGG | + | chr3_1:21007275-21007294 | None:intergenic | 40.0% | |
!! | CGTTGAGTTGGTTAGAATTG+AGG | - | chr3_1:21007281-21007300 | Msa0352280:CDS | 40.0% |
AGTTGGTTAGAATTGAGGGT+TGG | - | chr3_1:21007286-21007305 | Msa0352280:CDS | 40.0% | |
!!! | TTGGTGCCACTTTTGCAAAA+GGG | - | chr3_1:21007305-21007324 | Msa0352280:CDS | 40.0% |
TGATCAAGGTGAAGACTCTT+TGG | - | chr3_1:21007673-21007692 | Msa0352280:CDS | 40.0% | |
CATTTAGGGAAGCTGAACAA+AGG | + | chr3_1:21007768-21007787 | None:intergenic | 40.0% | |
! | ATACCTTCAGAAGGCTTTGA+AGG | + | chr3_1:21007895-21007914 | None:intergenic | 40.0% |
! | ATTGGGGTACCAACCTAATT+GGG | - | chr3_1:21008028-21008047 | Msa0352280:intron | 40.0% |
TACCAACCTAATTGGGATGT+CGG | - | chr3_1:21008035-21008054 | Msa0352280:intron | 40.0% | |
ACTAAACCAGAAGAAAGGAC+AGG | + | chr3_1:21008076-21008095 | None:intergenic | 40.0% | |
! | GCTCTTATTTGGTTGTCACA+AGG | - | chr3_1:21008173-21008192 | Msa0352280:intron | 40.0% |
GCGTCCGTTAAAAGAATTGA+AGG | + | chr3_1:21008277-21008296 | None:intergenic | 40.0% | |
CTAACACATCCAACACACTA+TGG | + | chr3_1:21008362-21008381 | None:intergenic | 40.0% | |
CATAGTGTGTTGGATGTGTT+AGG | - | chr3_1:21008360-21008379 | Msa0352280:intron | 40.0% | |
!!! | GACAGTCTCTGAAGCTATTT+TGG | - | chr3_1:21008614-21008633 | Msa0352280:intron | 40.0% |
ACACGATCCAATAGCCAAAA+GGG | + | chr3_1:21008695-21008714 | None:intergenic | 40.0% | |
AACACGATCCAATAGCCAAA+AGG | + | chr3_1:21008696-21008715 | None:intergenic | 40.0% | |
TCAACACGATCCAACCAAAA+GGG | + | chr3_1:21008736-21008755 | None:intergenic | 40.0% | |
TTCAACACGATCCAACCAAA+AGG | + | chr3_1:21008737-21008756 | None:intergenic | 40.0% | |
!!! | GACAGTCTCTGAAGCTATTT+TGG | - | chr3_1:21008614-21008633 | Msa0352280:intron | 40.0% |
TTGCCACATATGCGTTGAGT+TGG | - | chr3_1:21007269-21007288 | Msa0352280:CDS | 45.0% | |
!!! | GTTGGTGCCACTTTTGCAAA+AGG | - | chr3_1:21007304-21007323 | Msa0352280:CDS | 45.0% |
!!! | TGGTGCCACTTTTGCAAAAG+GGG | - | chr3_1:21007306-21007325 | Msa0352280:CDS | 45.0% |
ACAAAGGGTGGGAAAGAAGA+GGG | + | chr3_1:21007752-21007771 | None:intergenic | 45.0% | |
AACAAAGGGTGGGAAAGAAG+AGG | + | chr3_1:21007753-21007772 | None:intergenic | 45.0% | |
TCTCCTTCAAAGCCTTCTGA+AGG | - | chr3_1:21007889-21007908 | Msa0352280:intron | 45.0% | |
! | TTGAGCTTGGTGGCATAAGA+TGG | - | chr3_1:21007999-21008018 | Msa0352280:intron | 45.0% |
! | TGAGCTTGGTGGCATAAGAT+GGG | - | chr3_1:21008000-21008019 | Msa0352280:intron | 45.0% |
GCATAAGATGGGGGTTCATT+GGG | - | chr3_1:21008011-21008030 | Msa0352280:intron | 45.0% | |
CATAAGATGGGGGTTCATTG+GGG | - | chr3_1:21008012-21008031 | Msa0352280:intron | 45.0% | |
! | CATTGGGGTACCAACCTAAT+TGG | - | chr3_1:21008027-21008046 | Msa0352280:intron | 45.0% |
GAAACACCGACATCCCAATT+AGG | + | chr3_1:21008044-21008063 | None:intergenic | 45.0% | |
AGAAGAAAGGACAGGCATCA+AGG | + | chr3_1:21008068-21008087 | None:intergenic | 45.0% | |
TTGATGCCTGTCCTTTCTTC+TGG | - | chr3_1:21008067-21008086 | Msa0352280:intron | 45.0% | |
CATCCAACACACTATGGGTT+TGG | + | chr3_1:21008356-21008375 | None:intergenic | 45.0% | |
TTCCTTGGTTACACGCTTCT+GGG | + | chr3_1:21008529-21008548 | None:intergenic | 45.0% | |
!! | TAAGTGCCCCTTTTGGCTAT+TGG | - | chr3_1:21008685-21008704 | Msa0352280:intron | 45.0% |
CACGATCCAATAGCCAAAAG+GGG | + | chr3_1:21008694-21008713 | None:intergenic | 45.0% | |
CAACACGATCCAACCAAAAG+GGG | + | chr3_1:21008735-21008754 | None:intergenic | 45.0% | |
TTCCTTGGTTACACGCTTCT+GGG | + | chr3_1:21008529-21008548 | None:intergenic | 45.0% | |
TTGCCACATATGCGTTGAGT+TGG | - | chr3_1:21007269-21007288 | Msa0352280:CDS | 45.0% | |
!!! | GTTGGTGCCACTTTTGCAAA+AGG | - | chr3_1:21007304-21007323 | Msa0352280:CDS | 45.0% |
!!! | TGGTGCCACTTTTGCAAAAG+GGG | - | chr3_1:21007306-21007325 | Msa0352280:CDS | 45.0% |
ACAAAGGGTGGGAAAGAAGA+GGG | + | chr3_1:21007752-21007771 | None:intergenic | 45.0% | |
AACAAAGGGTGGGAAAGAAG+AGG | + | chr3_1:21007753-21007772 | None:intergenic | 45.0% | |
TCTCCTTCAAAGCCTTCTGA+AGG | - | chr3_1:21007889-21007908 | Msa0352280:intron | 45.0% | |
! | TTGAGCTTGGTGGCATAAGA+TGG | - | chr3_1:21007999-21008018 | Msa0352280:intron | 45.0% |
! | TGAGCTTGGTGGCATAAGAT+GGG | - | chr3_1:21008000-21008019 | Msa0352280:intron | 45.0% |
GCATAAGATGGGGGTTCATT+GGG | - | chr3_1:21008011-21008030 | Msa0352280:intron | 45.0% | |
CATAAGATGGGGGTTCATTG+GGG | - | chr3_1:21008012-21008031 | Msa0352280:intron | 45.0% | |
! | CATTGGGGTACCAACCTAAT+TGG | - | chr3_1:21008027-21008046 | Msa0352280:intron | 45.0% |
GAAACACCGACATCCCAATT+AGG | + | chr3_1:21008044-21008063 | None:intergenic | 45.0% | |
AGAAGAAAGGACAGGCATCA+AGG | + | chr3_1:21008068-21008087 | None:intergenic | 45.0% | |
TTGATGCCTGTCCTTTCTTC+TGG | - | chr3_1:21008067-21008086 | Msa0352280:intron | 45.0% | |
CATCCAACACACTATGGGTT+TGG | + | chr3_1:21008356-21008375 | None:intergenic | 45.0% | |
TTCCTTGGTTACACGCTTCT+GGG | + | chr3_1:21008529-21008548 | None:intergenic | 45.0% | |
!! | TAAGTGCCCCTTTTGGCTAT+TGG | - | chr3_1:21008685-21008704 | Msa0352280:intron | 45.0% |
CACGATCCAATAGCCAAAAG+GGG | + | chr3_1:21008694-21008713 | None:intergenic | 45.0% | |
CAACACGATCCAACCAAAAG+GGG | + | chr3_1:21008735-21008754 | None:intergenic | 45.0% | |
TTCCTTGGTTACACGCTTCT+GGG | + | chr3_1:21008529-21008548 | None:intergenic | 45.0% | |
AGGGAAGCTGAACAAAGGGT+GGG | + | chr3_1:21007763-21007782 | None:intergenic | 50.0% | |
TAGGGAAGCTGAACAAAGGG+TGG | + | chr3_1:21007764-21007783 | None:intergenic | 50.0% | |
!! | GGCTTTGAAGGAGACTGAGA+TGG | + | chr3_1:21007883-21007902 | None:intergenic | 50.0% |
! | GAGCTTGGTGGCATAAGATG+GGG | - | chr3_1:21008001-21008020 | Msa0352280:intron | 50.0% |
! | AGCTTGGTGGCATAAGATGG+GGG | - | chr3_1:21008002-21008021 | Msa0352280:intron | 50.0% |
GGCATAAGATGGGGGTTCAT+TGG | - | chr3_1:21008010-21008029 | Msa0352280:intron | 50.0% | |
CACCGACATCCCAATTAGGT+TGG | + | chr3_1:21008040-21008059 | None:intergenic | 50.0% | |
! | GAAGGGTCCCCTGAAAGTAT+AGG | + | chr3_1:21008133-21008152 | None:intergenic | 50.0% |
CCAACACACTATGGGTTTGG+AGG | + | chr3_1:21008353-21008372 | None:intergenic | 50.0% | |
CCTCCAAACCCATAGTGTGT+TGG | - | chr3_1:21008350-21008369 | Msa0352280:intron | 50.0% | |
! | TTCCCAGAAGCGTGTAACCA+AGG | - | chr3_1:21008524-21008543 | Msa0352280:CDS | 50.0% |
CTTCCTTGGTTACACGCTTC+TGG | + | chr3_1:21008530-21008549 | None:intergenic | 50.0% | |
GCGCATCTCTTCAACTTCCT+TGG | + | chr3_1:21008544-21008563 | None:intergenic | 50.0% | |
!! | GCTGCTTTAAGTGCCCCTTT+TGG | - | chr3_1:21008678-21008697 | Msa0352280:intron | 50.0% |
! | AAGCGCTTAAGTGCCCCTTT+TGG | - | chr3_1:21008719-21008738 | Msa0352280:intron | 50.0% |
! | GCTTAAGTGCCCCTTTTGGT+TGG | - | chr3_1:21008723-21008742 | Msa0352280:intron | 50.0% |
! | TTCCCAGAAGCGTGTAACCA+AGG | - | chr3_1:21008524-21008543 | Msa0352280:CDS | 50.0% |
CTTCCTTGGTTACACGCTTC+TGG | + | chr3_1:21008530-21008549 | None:intergenic | 50.0% | |
GCGCATCTCTTCAACTTCCT+TGG | + | chr3_1:21008544-21008563 | None:intergenic | 50.0% | |
AGGGAAGCTGAACAAAGGGT+GGG | + | chr3_1:21007763-21007782 | None:intergenic | 50.0% | |
TAGGGAAGCTGAACAAAGGG+TGG | + | chr3_1:21007764-21007783 | None:intergenic | 50.0% | |
!! | GGCTTTGAAGGAGACTGAGA+TGG | + | chr3_1:21007883-21007902 | None:intergenic | 50.0% |
! | GAGCTTGGTGGCATAAGATG+GGG | - | chr3_1:21008001-21008020 | Msa0352280:intron | 50.0% |
! | AGCTTGGTGGCATAAGATGG+GGG | - | chr3_1:21008002-21008021 | Msa0352280:intron | 50.0% |
GGCATAAGATGGGGGTTCAT+TGG | - | chr3_1:21008010-21008029 | Msa0352280:intron | 50.0% | |
CACCGACATCCCAATTAGGT+TGG | + | chr3_1:21008040-21008059 | None:intergenic | 50.0% | |
! | GAAGGGTCCCCTGAAAGTAT+AGG | + | chr3_1:21008133-21008152 | None:intergenic | 50.0% |
CCAACACACTATGGGTTTGG+AGG | + | chr3_1:21008353-21008372 | None:intergenic | 50.0% | |
CCTCCAAACCCATAGTGTGT+TGG | - | chr3_1:21008350-21008369 | Msa0352280:intron | 50.0% | |
! | TTCCCAGAAGCGTGTAACCA+AGG | - | chr3_1:21008524-21008543 | Msa0352280:CDS | 50.0% |
CTTCCTTGGTTACACGCTTC+TGG | + | chr3_1:21008530-21008549 | None:intergenic | 50.0% | |
GCGCATCTCTTCAACTTCCT+TGG | + | chr3_1:21008544-21008563 | None:intergenic | 50.0% | |
!! | GCTGCTTTAAGTGCCCCTTT+TGG | - | chr3_1:21008678-21008697 | Msa0352280:intron | 50.0% |
! | AAGCGCTTAAGTGCCCCTTT+TGG | - | chr3_1:21008719-21008738 | Msa0352280:intron | 50.0% |
! | GCTTAAGTGCCCCTTTTGGT+TGG | - | chr3_1:21008723-21008742 | Msa0352280:intron | 50.0% |
! | TTCCCAGAAGCGTGTAACCA+AGG | - | chr3_1:21008524-21008543 | Msa0352280:CDS | 50.0% |
CTTCCTTGGTTACACGCTTC+TGG | + | chr3_1:21008530-21008549 | None:intergenic | 50.0% | |
GCGCATCTCTTCAACTTCCT+TGG | + | chr3_1:21008544-21008563 | None:intergenic | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_1 | gene | 21007244 | 21008960 | 21007244 | ID=Msa0352280;Name=Msa0352280 |
chr3_1 | mRNA | 21007244 | 21008960 | 21007244 | ID=Msa0352280-mRNA-1;Parent=Msa0352280;Name=Msa0352280-mRNA-1;_AED=0.40;_eAED=0.40;_QI=0|0|0|0.66|0.4|0.33|6|0|259 |
chr3_1 | exon | 21008871 | 21008960 | 21008871 | ID=Msa0352280-mRNA-1:exon:4742;Parent=Msa0352280-mRNA-1 |
chr3_1 | exon | 21008659 | 21008667 | 21008659 | ID=Msa0352280-mRNA-1:exon:4741;Parent=Msa0352280-mRNA-1 |
chr3_1 | exon | 21008505 | 21008599 | 21008505 | ID=Msa0352280-mRNA-1:exon:4740;Parent=Msa0352280-mRNA-1 |
chr3_1 | exon | 21007900 | 21008009 | 21007900 | ID=Msa0352280-mRNA-1:exon:4739;Parent=Msa0352280-mRNA-1 |
chr3_1 | exon | 21007542 | 21007786 | 21007542 | ID=Msa0352280-mRNA-1:exon:4738;Parent=Msa0352280-mRNA-1 |
chr3_1 | exon | 21007244 | 21007474 | 21007244 | ID=Msa0352280-mRNA-1:exon:4737;Parent=Msa0352280-mRNA-1 |
chr3_1 | CDS | 21008871 | 21008960 | 21008871 | ID=Msa0352280-mRNA-1:cds;Parent=Msa0352280-mRNA-1 |
chr3_1 | CDS | 21008659 | 21008667 | 21008659 | ID=Msa0352280-mRNA-1:cds;Parent=Msa0352280-mRNA-1 |
chr3_1 | CDS | 21008505 | 21008599 | 21008505 | ID=Msa0352280-mRNA-1:cds;Parent=Msa0352280-mRNA-1 |
chr3_1 | CDS | 21007900 | 21008009 | 21007900 | ID=Msa0352280-mRNA-1:cds;Parent=Msa0352280-mRNA-1 |
chr3_1 | CDS | 21007542 | 21007786 | 21007542 | ID=Msa0352280-mRNA-1:cds;Parent=Msa0352280-mRNA-1 |
chr3_1 | CDS | 21007244 | 21007474 | 21007244 | ID=Msa0352280-mRNA-1:cds;Parent=Msa0352280-mRNA-1 |
Gene Sequence |
Protein sequence |