AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0352280


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0352280 MtrunA17_Chr3g0107931 46.058 241 47 3 26 183 1633 1873 6.57e-48 170
Msa0352280 MtrunA17_Chr3g0108171 43.494 269 41 6 26 183 1685 1953 2.37e-46 165
Msa0352280 MtrunA17_Chr3g0096771 56.618 136 42 1 66 184 141 276 6.99e-42 144
Msa0352280 MtrunA17_Chr3g0096771 64.286 70 25 0 187 256 204 273 1.21e-21 91.3
Msa0352280 MtrunA17_Chr3g0105471 50.955 157 37 1 66 182 82 238 1.41e-41 142
Msa0352280 MtrunA17_Chr2g0304131 49.367 158 40 1 66 183 144 301 3.13e-39 138
Msa0352280 MtrunA17_Chr3g0107641 49.686 159 40 1 65 183 20 178 3.58e-36 127
Msa0352280 MtrunA17_Chr3g0108151 48.408 157 41 1 66 182 1379 1535 8.00e-36 135
Msa0352280 MtrunA17_Chr3g0107261 45.283 159 47 1 66 184 228 386 8.70e-34 126
Msa0352280 MtrunA17_Chr3g0108821 47.561 164 39 2 66 182 1631 1794 3.51e-33 127
Msa0352280 MtrunA17_Chr3g0112521 77.027 74 17 0 186 259 5 78 4.11e-33 115
Msa0352280 MtrunA17_Chr3g0112521 78.873 71 15 0 112 182 6 76 7.92e-33 115
Msa0352280 MtrunA17_Chr3g0105521 47.771 157 37 2 66 182 1446 1597 6.11e-32 124
Msa0352280 MtrunA17_Chr3g0097011 35.115 262 52 5 26 183 136 383 1.55e-30 117
Msa0352280 MtrunA17_Chr3g0091861 45.912 159 32 2 65 183 1715 1859 1.84e-30 119
Msa0352280 MtrunA17_Chr3g0107171 43.258 178 64 4 41 183 194 369 3.54e-30 116
Msa0352280 MtrunA17_Chr3g0107171 64.286 70 25 0 187 256 298 367 1.77e-21 92.4
Msa0352280 MtrunA17_Chr3g0087641 55.172 116 12 1 65 140 231 346 6.08e-30 115
Msa0352280 MtrunA17_Chr3g0108811 46.012 163 37 3 66 186 1775 1928 7.17e-30 118
Msa0352280 MtrunA17_Chr7g0223911 62.195 82 31 0 101 182 71 152 8.98e-30 109
Msa0352280 MtrunA17_Chr7g0223911 61.429 70 27 0 187 256 82 151 2.28e-22 90.5
Msa0352280 MtrunA17_Chr3g0105591 44.785 163 43 2 66 181 264 426 1.10e-29 115
Msa0352280 MtrunA17_Chr3g0105551 43.293 164 46 2 66 182 1693 1856 2.38e-29 116
Msa0352280 MtrunA17_Chr3g0108761 42.767 159 37 2 65 183 22 166 5.64e-28 105
Msa0352280 MtrunA17_Chr3g0091851 42.138 159 37 3 65 183 1158 1301 2.23e-24 102
Msa0352280 MtrunA17_Chr3g0108091 40.972 144 31 2 65 168 370 499 2.61e-21 92.8
Msa0352280 MtrunA17_Chr3g0108071 40.972 144 31 2 65 168 833 962 5.14e-21 92.0
Msa0352280 MtrunA17_Chr3g0109131 68.254 63 20 0 122 184 97 159 7.78e-21 86.7
Msa0352280 MtrunA17_Chr3g0109131 68.333 60 19 0 197 256 97 156 2.60e-18 79.7
Msa0352280 MtrunA17_Chr7g0229711 38.095 147 42 3 70 183 7 137 7.55e-17 75.1
Msa0352280 MtrunA17_Chr3g0105491 51.562 64 24 1 200 256 1 64 2.94e-11 58.2
Msa0352280 MtrunA17_Chr3g0105491 50.769 65 25 1 125 182 1 65 4.89e-11 57.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 32 sgRNAs with CRISPR-Local

Find 242 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACAGTCTCTGAAGCTATTT+TGG 0.152194 3_1:-21007276 Msa0352280:CDS
GACAGTCTCTGAAGCTATTT+TGG 0.152194 3_1:-21007568 Msa0352280:CDS
TTACAAGATGTTCGCAAATT+TGG 0.202388 3_1:-21007771 Msa0352280:intron
CTTCCTTGGTTACACGCTTC+TGG 0.219273 3_1:+21007363 None:intergenic
CTTCCTTGGTTACACGCTTC+TGG 0.219273 3_1:+21007655 None:intergenic
AAATGCATTGCAAAAGCTAT+TGG 0.277807 3_1:-21007390 Msa0352280:CDS
AAATGCATTGCAAAAGCTAT+TGG 0.277807 3_1:-21007682 Msa0352280:CDS
ATCAGTAGCTAAATGATTCT+TGG 0.290113 3_1:+21007967 None:intergenic
TGATCAAGGTGAAGACTCTT+TGG 0.310630 3_1:-21008509 Msa0352280:CDS
TTCCTTGGTTACACGCTTCT+GGG 0.371059 3_1:+21007364 None:intergenic
TTCCTTGGTTACACGCTTCT+GGG 0.371059 3_1:+21007656 None:intergenic
CGTTGAGTTGGTTAGAATTG+AGG 0.419380 3_1:-21008901 Msa0352280:CDS
GCGCATCTCTTCAACTTCCT+TGG 0.433951 3_1:+21007349 None:intergenic
GCGCATCTCTTCAACTTCCT+TGG 0.433951 3_1:+21007641 None:intergenic
GTTGAGTTGGTTAGAATTGA+GGG 0.451282 3_1:-21008900 Msa0352280:CDS
GCGTCCGTTAAAAGAATTGA+AGG 0.452394 3_1:+21007908 None:intergenic
AAGCGCTTAAGTGCCCCTTT+TGG 0.454685 3_1:-21007463 Msa0352280:intron
AAGATGTTGATGTTAAAATC+TGG 0.466817 3_1:-21008555 Msa0352280:CDS
TCAACACGATCCAACCAAAA+GGG 0.478404 3_1:+21007449 None:intergenic
TTCAACACGATCCAACCAAA+AGG 0.483684 3_1:+21007448 None:intergenic
AGTAACACTAATATTGATCA+AGG 0.544327 3_1:-21008523 Msa0352280:CDS
TTGCCACATATGCGTTGAGT+TGG 0.544855 3_1:-21008913 Msa0352280:CDS
TGTTGATGTTAAAATCTGGC+AGG 0.560410 3_1:-21008551 Msa0352280:CDS
TAACCAACTCAACGCATATG+TGG 0.569365 3_1:+21008910 None:intergenic
TTTAACATCAACATCTTGAG+TGG 0.573990 3_1:+21008561 None:intergenic
AGTTGGTTAGAATTGAGGGT+TGG 0.574818 3_1:-21008896 Msa0352280:CDS
CAACACGATCCAACCAAAAG+GGG 0.588997 3_1:+21007450 None:intergenic
TAACACTTTGAATCGACATG+TGG 0.607054 3_1:-21007318 Msa0352280:CDS
TTCCCAGAAGCGTGTAACCA+AGG 0.623541 3_1:-21007366 Msa0352280:CDS
TTCCCAGAAGCGTGTAACCA+AGG 0.623541 3_1:-21007658 Msa0352280:CDS
TAACACTTTGAATCGACATG+TGG 0.634653 3_1:-21007610 Msa0352280:CDS
GAATTGAAGGATGCTTAACA+AGG 0.637134 3_1:+21007921 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTATAGAAAAAGAAAAT+AGG + chr3_1:21007469-21007488 None:intergenic 10.0%
!!! TATTTTTTTTTTATCGTTAA+TGG - chr3_1:21007912-21007931 Msa0352280:CDS 10.0%
!! TTATTATAGAAAAAGAAAAT+AGG + chr3_1:21007469-21007488 None:intergenic 10.0%
!!! TATTTTTTTTTTATCGTTAA+TGG - chr3_1:21007912-21007931 Msa0352280:CDS 10.0%
!!! ATAGTAAGTTTTTTTTTTGA+AGG - chr3_1:21007515-21007534 Msa0352280:intron 15.0%
!! TCATGAATTCTTAATATTAT+AGG + chr3_1:21007555-21007574 None:intergenic 15.0%
!!! TTCTTTTAAATGAATTTTGT+AGG - chr3_1:21007583-21007602 Msa0352280:CDS 15.0%
!!! TTTTGAGAAAATTTTAAATC+AGG + chr3_1:21008483-21008502 None:intergenic 15.0%
!!! TTTTGAGAAAATTTTAAATC+AGG + chr3_1:21008483-21008502 None:intergenic 15.0%
!!! ATAGTAAGTTTTTTTTTTGA+AGG - chr3_1:21007515-21007534 Msa0352280:intron 15.0%
!! TCATGAATTCTTAATATTAT+AGG + chr3_1:21007555-21007574 None:intergenic 15.0%
!!! TTCTTTTAAATGAATTTTGT+AGG - chr3_1:21007583-21007602 Msa0352280:CDS 15.0%
!!! TTTTGAGAAAATTTTAAATC+AGG + chr3_1:21008483-21008502 None:intergenic 15.0%
!!! TTTTGAGAAAATTTTAAATC+AGG + chr3_1:21008483-21008502 None:intergenic 15.0%
!! ATCAAAATGACTCTTATAAA+TGG + chr3_1:21007384-21007403 None:intergenic 20.0%
!! TGATATAAAGAGAACATAAT+TGG - chr3_1:21007400-21007419 Msa0352280:CDS 20.0%
!! TAATAAAGTAAGCTTACTTT+AGG - chr3_1:21007483-21007502 Msa0352280:intron 20.0%
!!! TTTTTTTTTGAAGGATAGTA+AGG - chr3_1:21007524-21007543 Msa0352280:intron 20.0%
!! AAAAAAAAAATACCTTCAGA+AGG + chr3_1:21007904-21007923 None:intergenic 20.0%
!!! TTTTTTTTATCGTTAATGGA+TGG - chr3_1:21007916-21007935 Msa0352280:CDS 20.0%
!!! AAAAAACAAAATTTTGAGCT+TGG - chr3_1:21007986-21008005 Msa0352280:CDS 20.0%
!!! TTATTTTTTCCTATACTTTC+AGG - chr3_1:21008121-21008140 Msa0352280:intron 20.0%
!!! TATTTTTTCCTATACTTTCA+GGG - chr3_1:21008122-21008141 Msa0352280:intron 20.0%
!! AATCTTCATATATTTGAGAA+GGG + chr3_1:21008150-21008169 None:intergenic 20.0%
!! AAATCTTCATATATTTGAGA+AGG + chr3_1:21008151-21008170 None:intergenic 20.0%
!! ATCAAAATGACTCTTATAAA+TGG + chr3_1:21007384-21007403 None:intergenic 20.0%
!! TGATATAAAGAGAACATAAT+TGG - chr3_1:21007400-21007419 Msa0352280:CDS 20.0%
!! TAATAAAGTAAGCTTACTTT+AGG - chr3_1:21007483-21007502 Msa0352280:intron 20.0%
!!! TTTTTTTTTGAAGGATAGTA+AGG - chr3_1:21007524-21007543 Msa0352280:intron 20.0%
!! AAAAAAAAAATACCTTCAGA+AGG + chr3_1:21007904-21007923 None:intergenic 20.0%
!!! TTTTTTTTATCGTTAATGGA+TGG - chr3_1:21007916-21007935 Msa0352280:CDS 20.0%
!!! AAAAAACAAAATTTTGAGCT+TGG - chr3_1:21007986-21008005 Msa0352280:CDS 20.0%
!!! TTATTTTTTCCTATACTTTC+AGG - chr3_1:21008121-21008140 Msa0352280:intron 20.0%
!!! TATTTTTTCCTATACTTTCA+GGG - chr3_1:21008122-21008141 Msa0352280:intron 20.0%
!! AATCTTCATATATTTGAGAA+GGG + chr3_1:21008150-21008169 None:intergenic 20.0%
!! AAATCTTCATATATTTGAGA+AGG + chr3_1:21008151-21008170 None:intergenic 20.0%
!! AAATGAATTTTGTAGGAAGA+TGG - chr3_1:21007590-21007609 Msa0352280:CDS 25.0%
! AAGATGTTGATGTTAAAATC+TGG - chr3_1:21007627-21007646 Msa0352280:CDS 25.0%
! AGTAACACTAATATTGATCA+AGG - chr3_1:21007659-21007678 Msa0352280:CDS 25.0%
! ACTAATATTTCTTCATCCTT+AGG + chr3_1:21007835-21007854 None:intergenic 25.0%
! AGAGAAAAATATGTACAAGA+GGG + chr3_1:21007957-21007976 None:intergenic 25.0%
! AAGAGAAAAATATGTACAAG+AGG + chr3_1:21007958-21007977 None:intergenic 25.0%
!! TTTTTACTAAACCAGAAGAA+AGG + chr3_1:21008081-21008100 None:intergenic 25.0%
!!! ATTTTTTCCTATACTTTCAG+GGG - chr3_1:21008123-21008142 Msa0352280:intron 25.0%
! TGAAGATTTAAGCTCTTATT+TGG - chr3_1:21008162-21008181 Msa0352280:intron 25.0%
! TTCACTAAGTAATAGATACA+AGG - chr3_1:21008297-21008316 Msa0352280:intron 25.0%
! TCACTAAGTAATAGATACAA+GGG - chr3_1:21008298-21008317 Msa0352280:intron 25.0%
! ATAACTCAACAAATTCAGAT+GGG + chr3_1:21008392-21008411 None:intergenic 25.0%
! AATAACTCAACAAATTCAGA+TGG + chr3_1:21008393-21008412 None:intergenic 25.0%
!!! AATTTGGTTTTGATAAGGAT+TGG - chr3_1:21008427-21008446 Msa0352280:intron 25.0%
!!! AACACAAGTTTTAGAAACTA+AGG - chr3_1:21008656-21008675 Msa0352280:intron 25.0%
!! AAATGAATTTTGTAGGAAGA+TGG - chr3_1:21007590-21007609 Msa0352280:CDS 25.0%
! AAGATGTTGATGTTAAAATC+TGG - chr3_1:21007627-21007646 Msa0352280:CDS 25.0%
! AGTAACACTAATATTGATCA+AGG - chr3_1:21007659-21007678 Msa0352280:CDS 25.0%
! ACTAATATTTCTTCATCCTT+AGG + chr3_1:21007835-21007854 None:intergenic 25.0%
! AGAGAAAAATATGTACAAGA+GGG + chr3_1:21007957-21007976 None:intergenic 25.0%
! AAGAGAAAAATATGTACAAG+AGG + chr3_1:21007958-21007977 None:intergenic 25.0%
!! TTTTTACTAAACCAGAAGAA+AGG + chr3_1:21008081-21008100 None:intergenic 25.0%
!!! ATTTTTTCCTATACTTTCAG+GGG - chr3_1:21008123-21008142 Msa0352280:intron 25.0%
! TGAAGATTTAAGCTCTTATT+TGG - chr3_1:21008162-21008181 Msa0352280:intron 25.0%
! TTCACTAAGTAATAGATACA+AGG - chr3_1:21008297-21008316 Msa0352280:intron 25.0%
! TCACTAAGTAATAGATACAA+GGG - chr3_1:21008298-21008317 Msa0352280:intron 25.0%
! ATAACTCAACAAATTCAGAT+GGG + chr3_1:21008392-21008411 None:intergenic 25.0%
! AATAACTCAACAAATTCAGA+TGG + chr3_1:21008393-21008412 None:intergenic 25.0%
!!! AATTTGGTTTTGATAAGGAT+TGG - chr3_1:21008427-21008446 Msa0352280:intron 25.0%
!!! AACACAAGTTTTAGAAACTA+AGG - chr3_1:21008656-21008675 Msa0352280:intron 25.0%
TTTAACATCAACATCTTGAG+TGG + chr3_1:21007624-21007643 None:intergenic 30.0%
TCAAAATGAAAAGGCTAATG+AGG + chr3_1:21007722-21007741 None:intergenic 30.0%
GGTTCAACTTCAAAATGAAA+AGG + chr3_1:21007731-21007750 None:intergenic 30.0%
AATACAAGAGAGTCTTGATT+TGG + chr3_1:21007860-21007879 None:intergenic 30.0%
!! TTATCGTTAATGGATGGTTT+TGG - chr3_1:21007922-21007941 Msa0352280:CDS 30.0%
AAAAATATGTACAAGAGGGT+GGG + chr3_1:21007953-21007972 None:intergenic 30.0%
! AAACAAAATTTTGAGCTTGG+TGG - chr3_1:21007989-21008008 Msa0352280:CDS 30.0%
ATCAGTAGCTAAATGATTCT+TGG + chr3_1:21008218-21008237 None:intergenic 30.0%
! GCATCCTTCAATTCTTTTAA+CGG - chr3_1:21008270-21008289 Msa0352280:intron 30.0%
ATTTCAATAGCTACAGTTGT+AGG + chr3_1:21008329-21008348 None:intergenic 30.0%
TTACAAGATGTTCGCAAATT+TGG - chr3_1:21008411-21008430 Msa0352280:intron 30.0%
!!! TCGCAAATTTGGTTTTGATA+AGG - chr3_1:21008422-21008441 Msa0352280:intron 30.0%
AAATGCATTGCAAAAGCTAT+TGG - chr3_1:21008500-21008519 Msa0352280:intron 30.0%
AAATGCATTGCAAAAGCTAT+TGG - chr3_1:21008500-21008519 Msa0352280:intron 30.0%
TTTAACATCAACATCTTGAG+TGG + chr3_1:21007624-21007643 None:intergenic 30.0%
TCAAAATGAAAAGGCTAATG+AGG + chr3_1:21007722-21007741 None:intergenic 30.0%
GGTTCAACTTCAAAATGAAA+AGG + chr3_1:21007731-21007750 None:intergenic 30.0%
AATACAAGAGAGTCTTGATT+TGG + chr3_1:21007860-21007879 None:intergenic 30.0%
!! TTATCGTTAATGGATGGTTT+TGG - chr3_1:21007922-21007941 Msa0352280:CDS 30.0%
AAAAATATGTACAAGAGGGT+GGG + chr3_1:21007953-21007972 None:intergenic 30.0%
! AAACAAAATTTTGAGCTTGG+TGG - chr3_1:21007989-21008008 Msa0352280:CDS 30.0%
ATCAGTAGCTAAATGATTCT+TGG + chr3_1:21008218-21008237 None:intergenic 30.0%
! GCATCCTTCAATTCTTTTAA+CGG - chr3_1:21008270-21008289 Msa0352280:intron 30.0%
ATTTCAATAGCTACAGTTGT+AGG + chr3_1:21008329-21008348 None:intergenic 30.0%
TTACAAGATGTTCGCAAATT+TGG - chr3_1:21008411-21008430 Msa0352280:intron 30.0%
!!! TCGCAAATTTGGTTTTGATA+AGG - chr3_1:21008422-21008441 Msa0352280:intron 30.0%
AAATGCATTGCAAAAGCTAT+TGG - chr3_1:21008500-21008519 Msa0352280:intron 30.0%
AAATGCATTGCAAAAGCTAT+TGG - chr3_1:21008500-21008519 Msa0352280:intron 30.0%
!! GTTGAGTTGGTTAGAATTGA+GGG - chr3_1:21007282-21007301 Msa0352280:CDS 35.0%
! TTTATCCCCTTTTGCAAAAG+TGG + chr3_1:21007314-21007333 None:intergenic 35.0%
TGTTGATGTTAAAATCTGGC+AGG - chr3_1:21007631-21007650 Msa0352280:CDS 35.0%
ATTTAGGGAAGCTGAACAAA+GGG + chr3_1:21007767-21007786 None:intergenic 35.0%
CATGACAGCATCATCATTTA+GGG + chr3_1:21007782-21007801 None:intergenic 35.0%
TCATGACAGCATCATCATTT+AGG + chr3_1:21007783-21007802 None:intergenic 35.0%
GAAAGTAAGCTCAGATATTC+AGG - chr3_1:21007801-21007820 Msa0352280:intron 35.0%
TATTCAGGATGAGTTTCCTA+AGG - chr3_1:21007816-21007835 Msa0352280:intron 35.0%
GAAAAATATGTACAAGAGGG+TGG + chr3_1:21007954-21007973 None:intergenic 35.0%
! CTCTTATTTGGTTGTCACAA+GGG - chr3_1:21008174-21008193 Msa0352280:intron 35.0%
GAATTGAAGGATGCTTAACA+AGG + chr3_1:21008264-21008283 None:intergenic 35.0%
TAACACATCCAACACACTAT+GGG + chr3_1:21008361-21008380 None:intergenic 35.0%
!!! TGGTTTTGATAAGGATTGGT+TGG - chr3_1:21008431-21008450 Msa0352280:intron 35.0%
TAACACTTTGAATCGACATG+TGG - chr3_1:21008572-21008591 Msa0352280:CDS 35.0%
TAACACTTTGAATCGACATG+TGG - chr3_1:21008572-21008591 Msa0352280:CDS 35.0%
!! GTTGAGTTGGTTAGAATTGA+GGG - chr3_1:21007282-21007301 Msa0352280:CDS 35.0%
! TTTATCCCCTTTTGCAAAAG+TGG + chr3_1:21007314-21007333 None:intergenic 35.0%
TGTTGATGTTAAAATCTGGC+AGG - chr3_1:21007631-21007650 Msa0352280:CDS 35.0%
ATTTAGGGAAGCTGAACAAA+GGG + chr3_1:21007767-21007786 None:intergenic 35.0%
CATGACAGCATCATCATTTA+GGG + chr3_1:21007782-21007801 None:intergenic 35.0%
TCATGACAGCATCATCATTT+AGG + chr3_1:21007783-21007802 None:intergenic 35.0%
GAAAGTAAGCTCAGATATTC+AGG - chr3_1:21007801-21007820 Msa0352280:intron 35.0%
TATTCAGGATGAGTTTCCTA+AGG - chr3_1:21007816-21007835 Msa0352280:intron 35.0%
GAAAAATATGTACAAGAGGG+TGG + chr3_1:21007954-21007973 None:intergenic 35.0%
! CTCTTATTTGGTTGTCACAA+GGG - chr3_1:21008174-21008193 Msa0352280:intron 35.0%
GAATTGAAGGATGCTTAACA+AGG + chr3_1:21008264-21008283 None:intergenic 35.0%
TAACACATCCAACACACTAT+GGG + chr3_1:21008361-21008380 None:intergenic 35.0%
!!! TGGTTTTGATAAGGATTGGT+TGG - chr3_1:21008431-21008450 Msa0352280:intron 35.0%
TAACACTTTGAATCGACATG+TGG - chr3_1:21008572-21008591 Msa0352280:CDS 35.0%
TAACACTTTGAATCGACATG+TGG - chr3_1:21008572-21008591 Msa0352280:CDS 35.0%
TAACCAACTCAACGCATATG+TGG + chr3_1:21007275-21007294 None:intergenic 40.0%
!! CGTTGAGTTGGTTAGAATTG+AGG - chr3_1:21007281-21007300 Msa0352280:CDS 40.0%
AGTTGGTTAGAATTGAGGGT+TGG - chr3_1:21007286-21007305 Msa0352280:CDS 40.0%
!!! TTGGTGCCACTTTTGCAAAA+GGG - chr3_1:21007305-21007324 Msa0352280:CDS 40.0%
TGATCAAGGTGAAGACTCTT+TGG - chr3_1:21007673-21007692 Msa0352280:CDS 40.0%
CATTTAGGGAAGCTGAACAA+AGG + chr3_1:21007768-21007787 None:intergenic 40.0%
! ATACCTTCAGAAGGCTTTGA+AGG + chr3_1:21007895-21007914 None:intergenic 40.0%
! ATTGGGGTACCAACCTAATT+GGG - chr3_1:21008028-21008047 Msa0352280:intron 40.0%
TACCAACCTAATTGGGATGT+CGG - chr3_1:21008035-21008054 Msa0352280:intron 40.0%
ACTAAACCAGAAGAAAGGAC+AGG + chr3_1:21008076-21008095 None:intergenic 40.0%
! GCTCTTATTTGGTTGTCACA+AGG - chr3_1:21008173-21008192 Msa0352280:intron 40.0%
GCGTCCGTTAAAAGAATTGA+AGG + chr3_1:21008277-21008296 None:intergenic 40.0%
CTAACACATCCAACACACTA+TGG + chr3_1:21008362-21008381 None:intergenic 40.0%
CATAGTGTGTTGGATGTGTT+AGG - chr3_1:21008360-21008379 Msa0352280:intron 40.0%
!!! GACAGTCTCTGAAGCTATTT+TGG - chr3_1:21008614-21008633 Msa0352280:intron 40.0%
ACACGATCCAATAGCCAAAA+GGG + chr3_1:21008695-21008714 None:intergenic 40.0%
AACACGATCCAATAGCCAAA+AGG + chr3_1:21008696-21008715 None:intergenic 40.0%
TCAACACGATCCAACCAAAA+GGG + chr3_1:21008736-21008755 None:intergenic 40.0%
TTCAACACGATCCAACCAAA+AGG + chr3_1:21008737-21008756 None:intergenic 40.0%
!!! GACAGTCTCTGAAGCTATTT+TGG - chr3_1:21008614-21008633 Msa0352280:intron 40.0%
TAACCAACTCAACGCATATG+TGG + chr3_1:21007275-21007294 None:intergenic 40.0%
!! CGTTGAGTTGGTTAGAATTG+AGG - chr3_1:21007281-21007300 Msa0352280:CDS 40.0%
AGTTGGTTAGAATTGAGGGT+TGG - chr3_1:21007286-21007305 Msa0352280:CDS 40.0%
!!! TTGGTGCCACTTTTGCAAAA+GGG - chr3_1:21007305-21007324 Msa0352280:CDS 40.0%
TGATCAAGGTGAAGACTCTT+TGG - chr3_1:21007673-21007692 Msa0352280:CDS 40.0%
CATTTAGGGAAGCTGAACAA+AGG + chr3_1:21007768-21007787 None:intergenic 40.0%
! ATACCTTCAGAAGGCTTTGA+AGG + chr3_1:21007895-21007914 None:intergenic 40.0%
! ATTGGGGTACCAACCTAATT+GGG - chr3_1:21008028-21008047 Msa0352280:intron 40.0%
TACCAACCTAATTGGGATGT+CGG - chr3_1:21008035-21008054 Msa0352280:intron 40.0%
ACTAAACCAGAAGAAAGGAC+AGG + chr3_1:21008076-21008095 None:intergenic 40.0%
! GCTCTTATTTGGTTGTCACA+AGG - chr3_1:21008173-21008192 Msa0352280:intron 40.0%
GCGTCCGTTAAAAGAATTGA+AGG + chr3_1:21008277-21008296 None:intergenic 40.0%
CTAACACATCCAACACACTA+TGG + chr3_1:21008362-21008381 None:intergenic 40.0%
CATAGTGTGTTGGATGTGTT+AGG - chr3_1:21008360-21008379 Msa0352280:intron 40.0%
!!! GACAGTCTCTGAAGCTATTT+TGG - chr3_1:21008614-21008633 Msa0352280:intron 40.0%
ACACGATCCAATAGCCAAAA+GGG + chr3_1:21008695-21008714 None:intergenic 40.0%
AACACGATCCAATAGCCAAA+AGG + chr3_1:21008696-21008715 None:intergenic 40.0%
TCAACACGATCCAACCAAAA+GGG + chr3_1:21008736-21008755 None:intergenic 40.0%
TTCAACACGATCCAACCAAA+AGG + chr3_1:21008737-21008756 None:intergenic 40.0%
!!! GACAGTCTCTGAAGCTATTT+TGG - chr3_1:21008614-21008633 Msa0352280:intron 40.0%
TTGCCACATATGCGTTGAGT+TGG - chr3_1:21007269-21007288 Msa0352280:CDS 45.0%
!!! GTTGGTGCCACTTTTGCAAA+AGG - chr3_1:21007304-21007323 Msa0352280:CDS 45.0%
!!! TGGTGCCACTTTTGCAAAAG+GGG - chr3_1:21007306-21007325 Msa0352280:CDS 45.0%
ACAAAGGGTGGGAAAGAAGA+GGG + chr3_1:21007752-21007771 None:intergenic 45.0%
AACAAAGGGTGGGAAAGAAG+AGG + chr3_1:21007753-21007772 None:intergenic 45.0%
TCTCCTTCAAAGCCTTCTGA+AGG - chr3_1:21007889-21007908 Msa0352280:intron 45.0%
! TTGAGCTTGGTGGCATAAGA+TGG - chr3_1:21007999-21008018 Msa0352280:intron 45.0%
! TGAGCTTGGTGGCATAAGAT+GGG - chr3_1:21008000-21008019 Msa0352280:intron 45.0%
GCATAAGATGGGGGTTCATT+GGG - chr3_1:21008011-21008030 Msa0352280:intron 45.0%
CATAAGATGGGGGTTCATTG+GGG - chr3_1:21008012-21008031 Msa0352280:intron 45.0%
! CATTGGGGTACCAACCTAAT+TGG - chr3_1:21008027-21008046 Msa0352280:intron 45.0%
GAAACACCGACATCCCAATT+AGG + chr3_1:21008044-21008063 None:intergenic 45.0%
AGAAGAAAGGACAGGCATCA+AGG + chr3_1:21008068-21008087 None:intergenic 45.0%
TTGATGCCTGTCCTTTCTTC+TGG - chr3_1:21008067-21008086 Msa0352280:intron 45.0%
CATCCAACACACTATGGGTT+TGG + chr3_1:21008356-21008375 None:intergenic 45.0%
TTCCTTGGTTACACGCTTCT+GGG + chr3_1:21008529-21008548 None:intergenic 45.0%
!! TAAGTGCCCCTTTTGGCTAT+TGG - chr3_1:21008685-21008704 Msa0352280:intron 45.0%
CACGATCCAATAGCCAAAAG+GGG + chr3_1:21008694-21008713 None:intergenic 45.0%
CAACACGATCCAACCAAAAG+GGG + chr3_1:21008735-21008754 None:intergenic 45.0%
TTCCTTGGTTACACGCTTCT+GGG + chr3_1:21008529-21008548 None:intergenic 45.0%
TTGCCACATATGCGTTGAGT+TGG - chr3_1:21007269-21007288 Msa0352280:CDS 45.0%
!!! GTTGGTGCCACTTTTGCAAA+AGG - chr3_1:21007304-21007323 Msa0352280:CDS 45.0%
!!! TGGTGCCACTTTTGCAAAAG+GGG - chr3_1:21007306-21007325 Msa0352280:CDS 45.0%
ACAAAGGGTGGGAAAGAAGA+GGG + chr3_1:21007752-21007771 None:intergenic 45.0%
AACAAAGGGTGGGAAAGAAG+AGG + chr3_1:21007753-21007772 None:intergenic 45.0%
TCTCCTTCAAAGCCTTCTGA+AGG - chr3_1:21007889-21007908 Msa0352280:intron 45.0%
! TTGAGCTTGGTGGCATAAGA+TGG - chr3_1:21007999-21008018 Msa0352280:intron 45.0%
! TGAGCTTGGTGGCATAAGAT+GGG - chr3_1:21008000-21008019 Msa0352280:intron 45.0%
GCATAAGATGGGGGTTCATT+GGG - chr3_1:21008011-21008030 Msa0352280:intron 45.0%
CATAAGATGGGGGTTCATTG+GGG - chr3_1:21008012-21008031 Msa0352280:intron 45.0%
! CATTGGGGTACCAACCTAAT+TGG - chr3_1:21008027-21008046 Msa0352280:intron 45.0%
GAAACACCGACATCCCAATT+AGG + chr3_1:21008044-21008063 None:intergenic 45.0%
AGAAGAAAGGACAGGCATCA+AGG + chr3_1:21008068-21008087 None:intergenic 45.0%
TTGATGCCTGTCCTTTCTTC+TGG - chr3_1:21008067-21008086 Msa0352280:intron 45.0%
CATCCAACACACTATGGGTT+TGG + chr3_1:21008356-21008375 None:intergenic 45.0%
TTCCTTGGTTACACGCTTCT+GGG + chr3_1:21008529-21008548 None:intergenic 45.0%
!! TAAGTGCCCCTTTTGGCTAT+TGG - chr3_1:21008685-21008704 Msa0352280:intron 45.0%
CACGATCCAATAGCCAAAAG+GGG + chr3_1:21008694-21008713 None:intergenic 45.0%
CAACACGATCCAACCAAAAG+GGG + chr3_1:21008735-21008754 None:intergenic 45.0%
TTCCTTGGTTACACGCTTCT+GGG + chr3_1:21008529-21008548 None:intergenic 45.0%
AGGGAAGCTGAACAAAGGGT+GGG + chr3_1:21007763-21007782 None:intergenic 50.0%
TAGGGAAGCTGAACAAAGGG+TGG + chr3_1:21007764-21007783 None:intergenic 50.0%
!! GGCTTTGAAGGAGACTGAGA+TGG + chr3_1:21007883-21007902 None:intergenic 50.0%
! GAGCTTGGTGGCATAAGATG+GGG - chr3_1:21008001-21008020 Msa0352280:intron 50.0%
! AGCTTGGTGGCATAAGATGG+GGG - chr3_1:21008002-21008021 Msa0352280:intron 50.0%
GGCATAAGATGGGGGTTCAT+TGG - chr3_1:21008010-21008029 Msa0352280:intron 50.0%
CACCGACATCCCAATTAGGT+TGG + chr3_1:21008040-21008059 None:intergenic 50.0%
! GAAGGGTCCCCTGAAAGTAT+AGG + chr3_1:21008133-21008152 None:intergenic 50.0%
CCAACACACTATGGGTTTGG+AGG + chr3_1:21008353-21008372 None:intergenic 50.0%
CCTCCAAACCCATAGTGTGT+TGG - chr3_1:21008350-21008369 Msa0352280:intron 50.0%
! TTCCCAGAAGCGTGTAACCA+AGG - chr3_1:21008524-21008543 Msa0352280:CDS 50.0%
CTTCCTTGGTTACACGCTTC+TGG + chr3_1:21008530-21008549 None:intergenic 50.0%
GCGCATCTCTTCAACTTCCT+TGG + chr3_1:21008544-21008563 None:intergenic 50.0%
!! GCTGCTTTAAGTGCCCCTTT+TGG - chr3_1:21008678-21008697 Msa0352280:intron 50.0%
! AAGCGCTTAAGTGCCCCTTT+TGG - chr3_1:21008719-21008738 Msa0352280:intron 50.0%
! GCTTAAGTGCCCCTTTTGGT+TGG - chr3_1:21008723-21008742 Msa0352280:intron 50.0%
! TTCCCAGAAGCGTGTAACCA+AGG - chr3_1:21008524-21008543 Msa0352280:CDS 50.0%
CTTCCTTGGTTACACGCTTC+TGG + chr3_1:21008530-21008549 None:intergenic 50.0%
GCGCATCTCTTCAACTTCCT+TGG + chr3_1:21008544-21008563 None:intergenic 50.0%
AGGGAAGCTGAACAAAGGGT+GGG + chr3_1:21007763-21007782 None:intergenic 50.0%
TAGGGAAGCTGAACAAAGGG+TGG + chr3_1:21007764-21007783 None:intergenic 50.0%
!! GGCTTTGAAGGAGACTGAGA+TGG + chr3_1:21007883-21007902 None:intergenic 50.0%
! GAGCTTGGTGGCATAAGATG+GGG - chr3_1:21008001-21008020 Msa0352280:intron 50.0%
! AGCTTGGTGGCATAAGATGG+GGG - chr3_1:21008002-21008021 Msa0352280:intron 50.0%
GGCATAAGATGGGGGTTCAT+TGG - chr3_1:21008010-21008029 Msa0352280:intron 50.0%
CACCGACATCCCAATTAGGT+TGG + chr3_1:21008040-21008059 None:intergenic 50.0%
! GAAGGGTCCCCTGAAAGTAT+AGG + chr3_1:21008133-21008152 None:intergenic 50.0%
CCAACACACTATGGGTTTGG+AGG + chr3_1:21008353-21008372 None:intergenic 50.0%
CCTCCAAACCCATAGTGTGT+TGG - chr3_1:21008350-21008369 Msa0352280:intron 50.0%
! TTCCCAGAAGCGTGTAACCA+AGG - chr3_1:21008524-21008543 Msa0352280:CDS 50.0%
CTTCCTTGGTTACACGCTTC+TGG + chr3_1:21008530-21008549 None:intergenic 50.0%
GCGCATCTCTTCAACTTCCT+TGG + chr3_1:21008544-21008563 None:intergenic 50.0%
!! GCTGCTTTAAGTGCCCCTTT+TGG - chr3_1:21008678-21008697 Msa0352280:intron 50.0%
! AAGCGCTTAAGTGCCCCTTT+TGG - chr3_1:21008719-21008738 Msa0352280:intron 50.0%
! GCTTAAGTGCCCCTTTTGGT+TGG - chr3_1:21008723-21008742 Msa0352280:intron 50.0%
! TTCCCAGAAGCGTGTAACCA+AGG - chr3_1:21008524-21008543 Msa0352280:CDS 50.0%
CTTCCTTGGTTACACGCTTC+TGG + chr3_1:21008530-21008549 None:intergenic 50.0%
GCGCATCTCTTCAACTTCCT+TGG + chr3_1:21008544-21008563 None:intergenic 50.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 21007244 21008960 21007244 ID=Msa0352280;Name=Msa0352280
chr3_1 mRNA 21007244 21008960 21007244 ID=Msa0352280-mRNA-1;Parent=Msa0352280;Name=Msa0352280-mRNA-1;_AED=0.40;_eAED=0.40;_QI=0|0|0|0.66|0.4|0.33|6|0|259
chr3_1 exon 21008871 21008960 21008871 ID=Msa0352280-mRNA-1:exon:4742;Parent=Msa0352280-mRNA-1
chr3_1 exon 21008659 21008667 21008659 ID=Msa0352280-mRNA-1:exon:4741;Parent=Msa0352280-mRNA-1
chr3_1 exon 21008505 21008599 21008505 ID=Msa0352280-mRNA-1:exon:4740;Parent=Msa0352280-mRNA-1
chr3_1 exon 21007900 21008009 21007900 ID=Msa0352280-mRNA-1:exon:4739;Parent=Msa0352280-mRNA-1
chr3_1 exon 21007542 21007786 21007542 ID=Msa0352280-mRNA-1:exon:4738;Parent=Msa0352280-mRNA-1
chr3_1 exon 21007244 21007474 21007244 ID=Msa0352280-mRNA-1:exon:4737;Parent=Msa0352280-mRNA-1
chr3_1 CDS 21008871 21008960 21008871 ID=Msa0352280-mRNA-1:cds;Parent=Msa0352280-mRNA-1
chr3_1 CDS 21008659 21008667 21008659 ID=Msa0352280-mRNA-1:cds;Parent=Msa0352280-mRNA-1
chr3_1 CDS 21008505 21008599 21008505 ID=Msa0352280-mRNA-1:cds;Parent=Msa0352280-mRNA-1
chr3_1 CDS 21007900 21008009 21007900 ID=Msa0352280-mRNA-1:cds;Parent=Msa0352280-mRNA-1
chr3_1 CDS 21007542 21007786 21007542 ID=Msa0352280-mRNA-1:cds;Parent=Msa0352280-mRNA-1
chr3_1 CDS 21007244 21007474 21007244 ID=Msa0352280-mRNA-1:cds;Parent=Msa0352280-mRNA-1
Gene Sequence

>Msa0352280

ATGGCATCTGACTCAGCTAAGTCAGTTGCCACATATGCGTTGAGTTGGTTAGAATTGAGGGTTGGTGCCACTTTTGCAAAAGGGGATAAAGATAGTAAGGAAGATGGTGATGTTACCACTCAAGATGTTGATGTTAAAATCTGGCAGGACACTAGTAACACTAATATTGATCAAGGTGAAGACTCTTTGGATCAGGAGCTTGAGAATCTAGTCTCCAAGAATCATTTAGCTACTGATAACTTGTCTTTGTTGACTGATTTCCTTGTTAAGCATCCTTCAATTCTTTTAACGGACGCTTCACTAAATGTTCGCAAATTTGGTTTTGATAAGGATTGGTTGGATTGTGTTGAAAAGAGCGCTTTGTTTCCTGATTTAAAATTTTCTCAAAATGCATTGCAAAAGCTATTGGATTCCCAGAAGCGTGTAACCAAGGAAGTTGAAGAGATGCGCTTAAAAATTAACACTTTGAATCGACATGTGGAAGATCTTAAGCAGCAATTGACAGTCTCTGAAGCTATTTTGGAGACTATCATTCAACAAAAAACACAATGCCCCTTTTGGTTGGATCGTGTTGAAAAGCGCGCTTTGTTTCCTGATTTAAAATTTTCTCAAAATGCATTGCAAAAGCTATTGGATTCCCAGAAGCGTGTAACCAAGGAAGTTGAAGAGATGCGCTTAAAAATTAACACTTTGAATCGACATGTGGAATATCTTAAGCAGCAATTGACAGTCTCTGAAGCTATTTTGGAGACTATCATTCAACAAAAACACAAGTTTTAG

Protein sequence

>Msa0352280

MASDSAKSVATYALSWLELRVGATFAKGDKDSKEDGDVTTQDVDVKIWQDTSNTNIDQGEDSLDQELENLVSKNHLATDNLSLLTDFLVKHPSILLTDASLNVRKFGFDKDWLDCVEKSALFPDLKFSQNALQKLLDSQKRVTKEVEEMRLKINTLNRHVEDLKQQLTVSEAILETIIQQKTQCPFWLDRVEKRALFPDLKFSQNALQKLLDSQKRVTKEVEEMRLKINTLNRHVEYLKQQLTVSEAILETIIQQKHKF*