Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0354480 | XP_003599451.1 | 95.726 | 351 | 14 | 1 | 1 | 351 | 1 | 350 | 0.0 | 704 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0354480 | G7IX31 | 95.726 | 351 | 14 | 1 | 1 | 351 | 1 | 350 | 0.0 | 704 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0354480 | Msa1349730 | 0.813696 | 2.245915e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0354480 | MtrunA17_Chr3g0090061 | 95.726 | 351 | 14 | 1 | 1 | 351 | 1 | 350 | 0.0 | 704 |
| Msa0354480 | MtrunA17_Chr6g0486001 | 30.723 | 166 | 109 | 4 | 175 | 336 | 131 | 294 | 1.44e-16 | 79.3 |
| Msa0354480 | MtrunA17_Chr6g0483441 | 25.121 | 207 | 132 | 6 | 130 | 330 | 87 | 276 | 9.52e-16 | 76.6 |
| Msa0354480 | MtrunA17_Chr2g0331671 | 25.000 | 312 | 189 | 8 | 29 | 336 | 27 | 297 | 1.15e-15 | 76.6 |
| Msa0354480 | MtrunA17_Chr4g0053001 | 25.161 | 155 | 114 | 2 | 178 | 330 | 158 | 312 | 1.19e-15 | 77.0 |
| Msa0354480 | MtrunA17_Chr8g0392551 | 29.032 | 155 | 98 | 4 | 183 | 330 | 129 | 278 | 1.50e-13 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0354480 | AT3G08490.1 | 38.344 | 326 | 133 | 7 | 29 | 351 | 11 | 271 | 3.89e-59 | 192 |
| Msa0354480 | AT3G24600.1 | 29.730 | 148 | 102 | 2 | 180 | 326 | 135 | 281 | 9.93e-14 | 71.2 |
| Msa0354480 | AT1G45688.1 | 23.984 | 246 | 148 | 7 | 130 | 351 | 111 | 341 | 1.33e-12 | 68.6 |
| Msa0354480 | AT5G42860.1 | 23.265 | 245 | 151 | 6 | 130 | 351 | 89 | 319 | 1.80e-12 | 67.8 |
| Msa0354480 | AT1G45688.2 | 30.252 | 119 | 71 | 3 | 130 | 248 | 111 | 217 | 4.64e-11 | 62.8 |
Find 115 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACTTTCTCTCCCACTTATT+TGG | 0.159382 | 3_1:-25746902 | Msa0354480:five_prime_UTR |
| ACTCACCTCAAAGGAGATTT+TGG | 0.164708 | 3_1:+25746286 | None:intergenic |
| CTGATTCATGTGCTTGGATT+TGG | 0.255227 | 3_1:-25746388 | Msa0354480:CDS |
| ATTCTCTACGATTAAATTCA+TGG | 0.258492 | 3_1:+25746103 | None:intergenic |
| CATCTTTCCATTGCAATTAG+AGG | 0.258908 | 3_1:-25744845 | Msa0354480:CDS |
| CCTTCCCCTAGTTTAAATTC+TGG | 0.277887 | 3_1:+25746173 | None:intergenic |
| TGGAGAGTTATGGTGAGTTT+TGG | 0.299754 | 3_1:-25746353 | Msa0354480:CDS |
| AACTTCAAGCTTTAATCAAT+TGG | 0.300867 | 3_1:+25744544 | None:intergenic |
| AAGATTACTTGTATCAATAT+TGG | 0.308847 | 3_1:+25744754 | None:intergenic |
| TGTTATGATGCATACCATTA+TGG | 0.316626 | 3_1:+25746843 | None:intergenic |
| GGGAGACTGTGGAGGGGCTT+TGG | 0.317147 | 3_1:+25746759 | None:intergenic |
| GATGGGTCTCCGATCGGTTC+GGG | 0.326823 | 3_1:+25746675 | None:intergenic |
| AAGTTGATTCGGCGTCGTTT+TGG | 0.330661 | 3_1:+25746705 | None:intergenic |
| GGAAAATTTCATATCCATCT+TGG | 0.356601 | 3_1:+25746046 | None:intergenic |
| TACAAGTACTATTAAATGCT+TGG | 0.358819 | 3_1:+25744626 | None:intergenic |
| TCTCCGATCGGTTCGGGGAG+TGG | 0.369741 | 3_1:+25746681 | None:intergenic |
| TTCTCTCCCACTTATTTGGC+TGG | 0.378005 | 3_1:-25746898 | Msa0354480:five_prime_UTR |
| CGATGGGTCTCCGATCGGTT+CGG | 0.389192 | 3_1:+25746674 | None:intergenic |
| CTGGGTTCTTGTTCGTGGGC+CGG | 0.391193 | 3_1:+25746644 | None:intergenic |
| GGATTTGGCTGCAAGTTACT+TGG | 0.400048 | 3_1:-25746373 | Msa0354480:CDS |
| ACAATAATGTCTTACCATAA+TGG | 0.402119 | 3_1:-25746857 | Msa0354480:exon |
| ACCGGCTGGGTTCTTGTTCG+TGG | 0.404708 | 3_1:+25746639 | None:intergenic |
| GCGGCAAAGGGCAAACCGGC+TGG | 0.413069 | 3_1:+25746625 | None:intergenic |
| CTCTAATTGCAATGGAAAGA+TGG | 0.417898 | 3_1:+25744846 | None:intergenic |
| GAAAATTTCATATCCATCTT+GGG | 0.420985 | 3_1:+25746047 | None:intergenic |
| ACAAGTACTATTAAATGCTT+GGG | 0.425815 | 3_1:+25744627 | None:intergenic |
| AACTTAGGCTTTACAAGTGC+TGG | 0.443593 | 3_1:+25744709 | None:intergenic |
| GCAAGTTACTTGGAGAGTTA+TGG | 0.444531 | 3_1:-25746363 | Msa0354480:CDS |
| CGTGGGCCGGATTTGTCCGA+TGG | 0.446885 | 3_1:+25746657 | None:intergenic |
| AGGAGAGAAAGTGGTAAGAA+AGG | 0.452505 | 3_1:-25744498 | Msa0354480:three_prime_UTR |
| GCTTGTCTATGCTATTTGCA+TGG | 0.459271 | 3_1:+25746738 | None:intergenic |
| GAGAGGAGGAGTAGCGGCAA+AGG | 0.460562 | 3_1:+25746612 | None:intergenic |
| AGTATCCACACGGGTAGGTT+TGG | 0.463829 | 3_1:+25746786 | None:intergenic |
| TGAAAATGCAAAGGGTAAGA+TGG | 0.472009 | 3_1:+25746025 | None:intergenic |
| TTCTTTGCCTCTAATTGCAA+TGG | 0.473022 | 3_1:+25744838 | None:intergenic |
| CCGGCTGGGTTCTTGTTCGT+GGG | 0.476978 | 3_1:+25746640 | None:intergenic |
| GGAGACCCATCGGACAAATC+CGG | 0.480403 | 3_1:-25746663 | Msa0354480:CDS |
| CGGGGAGTGGAAAGTTGATT+CGG | 0.483375 | 3_1:+25746694 | None:intergenic |
| ATTGCATGTCAGAATCTTTG+TGG | 0.483834 | 3_1:+25746130 | None:intergenic |
| GGGGAAGGAGTGGATAGAAC+TGG | 0.484376 | 3_1:-25746158 | Msa0354480:CDS |
| TTGTCCGATGGGTCTCCGAT+CGG | 0.484427 | 3_1:+25746669 | None:intergenic |
| GCTTCTTCCAGCACCATACA+TGG | 0.484750 | 3_1:+25744810 | None:intergenic |
| ATAACTCTGATTCATGTGCT+TGG | 0.487741 | 3_1:-25746394 | Msa0354480:CDS |
| AACACCCAAAATCTCCTTTG+AGG | 0.489450 | 3_1:-25746291 | Msa0354480:intron |
| TCTACCCGGTGATGGAACTT+AGG | 0.492874 | 3_1:+25744694 | None:intergenic |
| GCAAAGAATAAGCCCATGTA+TGG | 0.500144 | 3_1:-25744823 | Msa0354480:CDS |
| AGTAGCGGCAAAGGGCAAAC+CGG | 0.505903 | 3_1:+25746621 | None:intergenic |
| AGGATTCCAGAATTTAAACT+AGG | 0.507497 | 3_1:-25746179 | Msa0354480:CDS |
| GTGGTGTAAGAAAGAGTTGT+TGG | 0.508273 | 3_1:+25746583 | None:intergenic |
| AATAAGCCCATGTATGGTGC+TGG | 0.508737 | 3_1:-25744817 | Msa0354480:CDS |
| CCACTTTCAGCGTAGAGCTC+AGG | 0.509181 | 3_1:+25744874 | None:intergenic |
| CAAATAAGTGGGAGAGAAAG+TGG | 0.509490 | 3_1:+25746903 | None:intergenic |
| AAGCACATGAATCAGAGTTA+TGG | 0.515419 | 3_1:+25746396 | None:intergenic |
| TTGTTTCTTACATTCAAGAC+CGG | 0.526751 | 3_1:+25744434 | None:intergenic |
| ATGGAGGACATGCTAGATTC+TGG | 0.527804 | 3_1:-25744787 | Msa0354480:CDS |
| CTTGTCTATGCTATTTGCAT+GGG | 0.527808 | 3_1:+25746739 | None:intergenic |
| CTTGAGTTCAAGCTTTGAAG+TGG | 0.530401 | 3_1:-25744734 | Msa0354480:CDS |
| GACATGCTAGATTCTGGAAG+AGG | 0.530423 | 3_1:-25744781 | Msa0354480:CDS |
| TTTGCATGGGAGACTGTGGA+GGG | 0.530637 | 3_1:+25746752 | None:intergenic |
| CCTGAGCTCTACGCTGAAAG+TGG | 0.532046 | 3_1:-25744874 | Msa0354480:CDS |
| TCATATTCGTCCTCCCAAGA+TGG | 0.537207 | 3_1:-25746060 | Msa0354480:CDS |
| ATTTGCATGGGAGACTGTGG+AGG | 0.538727 | 3_1:+25746751 | None:intergenic |
| TGATTGGTTGTTAAACGGAA+AGG | 0.539350 | 3_1:-25744518 | Msa0354480:three_prime_UTR |
| CGGCAAAGGGCAAACCGGCT+GGG | 0.547756 | 3_1:+25746626 | None:intergenic |
| GTTGTTGGAGCCTCGAGAGG+AGG | 0.547902 | 3_1:+25746598 | None:intergenic |
| CTTACAATTGAAAATGCAAA+GGG | 0.548971 | 3_1:+25746017 | None:intergenic |
| TAAACGGAAAGGAGAGAAAG+TGG | 0.549311 | 3_1:-25744507 | Msa0354480:three_prime_UTR |
| GGATTCCAGAATTTAAACTA+GGG | 0.550237 | 3_1:-25746178 | Msa0354480:CDS |
| CTATACATTCTACCCGGTGA+TGG | 0.555955 | 3_1:+25744686 | None:intergenic |
| TAAAGCCTAAGTTCCATCAC+CGG | 0.557567 | 3_1:-25744699 | Msa0354480:CDS |
| AGAGGAGGAGTAGCGGCAAA+GGG | 0.557928 | 3_1:+25746613 | None:intergenic |
| TTATTGATTTGCAGATTGCA+AGG | 0.558955 | 3_1:-25746199 | Msa0354480:intron |
| CCAGAATTTAAACTAGGGGA+AGG | 0.562426 | 3_1:-25746173 | Msa0354480:CDS |
| AAACGATGATGATCACCATC+TGG | 0.567321 | 3_1:-25746528 | Msa0354480:CDS |
| CTCTTTCTTACACCACAAGA+AGG | 0.567863 | 3_1:-25746576 | Msa0354480:CDS |
| ACTTACAATTGAAAATGCAA+AGG | 0.570017 | 3_1:+25746016 | None:intergenic |
| GTCAGTGATGAGGATGAGAA+AGG | 0.571099 | 3_1:-25746476 | Msa0354480:CDS |
| AGATAATGAAGTATTCCCTC+CGG | 0.576735 | 3_1:-25744453 | Msa0354480:three_prime_UTR |
| GTGGGCCGGATTTGTCCGAT+GGG | 0.577707 | 3_1:+25746658 | None:intergenic |
| AGTACTCTATATAAATTATG+TGG | 0.579930 | 3_1:-25744573 | Msa0354480:three_prime_UTR |
| TAGTATGCCAGCCAAATAAG+TGG | 0.581592 | 3_1:+25746891 | None:intergenic |
| TGCCGCTACTCCTCCTCTCG+AGG | 0.584285 | 3_1:-25746608 | Msa0354480:CDS |
| CACAAGAAGGTCTCATATGA+CGG | 0.585874 | 3_1:-25746563 | Msa0354480:CDS |
| TCACCGGGTAGAATGTATAG+TGG | 0.588847 | 3_1:-25744683 | Msa0354480:CDS |
| CTTCTTCCAGCACCATACAT+GGG | 0.599255 | 3_1:+25744811 | None:intergenic |
| AGCCTCGAGAGGAGGAGTAG+CGG | 0.600686 | 3_1:+25746606 | None:intergenic |
| ATTTAAACTAGGGGAAGGAG+TGG | 0.600866 | 3_1:-25746168 | Msa0354480:CDS |
| GCTATTTGCATGGGAGACTG+TGG | 0.602108 | 3_1:+25746748 | None:intergenic |
| CGAACCGATCGGAGACCCAT+CGG | 0.604171 | 3_1:-25746673 | Msa0354480:CDS |
| CCCACGAACAAGAACCCAGC+CGG | 0.607320 | 3_1:-25746640 | Msa0354480:CDS |
| TTTCCACTCCCCGAACCGAT+CGG | 0.607705 | 3_1:-25746684 | Msa0354480:CDS |
| TCAGTGATGAGGATGAGAAA+GGG | 0.611348 | 3_1:-25746475 | Msa0354480:CDS |
| AATTGACGCACTCACCTCAA+AGG | 0.615175 | 3_1:+25746277 | None:intergenic |
| TTCTTACATTCAAGACCGGA+GGG | 0.616558 | 3_1:+25744438 | None:intergenic |
| TTTCTTACATTCAAGACCGG+AGG | 0.616800 | 3_1:+25744437 | None:intergenic |
| AATTTCATATCCATCTTGGG+AGG | 0.619011 | 3_1:+25746050 | None:intergenic |
| CTTTGGACATAGTATCCACA+CGG | 0.620751 | 3_1:+25746776 | None:intergenic |
| CGTTGACGATCACCACCAGA+TGG | 0.633609 | 3_1:+25746513 | None:intergenic |
| AAAGCCTAAGTTCCATCACC+GGG | 0.638761 | 3_1:-25744698 | Msa0354480:CDS |
| ATGGGTCTCCGATCGGTTCG+GGG | 0.639922 | 3_1:+25746676 | None:intergenic |
| GACATAGTATCCACACGGGT+AGG | 0.641710 | 3_1:+25746781 | None:intergenic |
| AGAGTTGTTGGAGCCTCGAG+AGG | 0.641966 | 3_1:+25746595 | None:intergenic |
| GATTCCAGAATTTAAACTAG+GGG | 0.643576 | 3_1:-25746177 | Msa0354480:CDS |
| AGTATGCCAGCCAAATAAGT+GGG | 0.646192 | 3_1:+25746892 | None:intergenic |
| GTGGTGATCGTCAACGACAG+TGG | 0.647467 | 3_1:-25746506 | Msa0354480:CDS |
| GTATGGTGCTGGAAGAAGCA+TGG | 0.653626 | 3_1:-25744806 | Msa0354480:CDS |
| TTGCATGGGAGACTGTGGAG+GGG | 0.663470 | 3_1:+25746753 | None:intergenic |
| CGTCAACGACAGTGGCAGTG+TGG | 0.664148 | 3_1:-25746498 | Msa0354480:CDS |
| TGGCAGTGTGGTCAGTGATG+AGG | 0.678995 | 3_1:-25746486 | Msa0354480:CDS |
| ACATACCAAACCTACCCGTG+TGG | 0.693956 | 3_1:-25746791 | Msa0354480:CDS |
| GAACCACTATACATTCTACC+CGG | 0.700805 | 3_1:+25744680 | None:intergenic |
| CGTCATATGAGACCTTCTTG+TGG | 0.706770 | 3_1:+25746564 | None:intergenic |
| CGATGATGATCACCATCTGG+TGG | 0.720318 | 3_1:-25746525 | Msa0354480:CDS |
| TTTGGACATAGTATCCACAC+GGG | 0.750481 | 3_1:+25746777 | None:intergenic |
| TGGTGCTGGAAGAAGCATGG+AGG | 0.797032 | 3_1:-25744803 | Msa0354480:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTAATCACTAATTTTTT+TGG | - | chr3_1:25745550-25745569 | Msa0354480:intron | 10.0% |
| !!! | TTTTTTTTTTTTTTTAAGGA+AGG | - | chr3_1:25745878-25745897 | Msa0354480:intron | 10.0% |
| !!! | TTTTTTTTTTTTTTAAGGAA+GGG | - | chr3_1:25745879-25745898 | Msa0354480:intron | 10.0% |
| !!! | ATTTTATTTATTTTTCCTTA+GGG | + | chr3_1:25746371-25746390 | None:intergenic | 10.0% |
| !!! | TATTTTATTTATTTTTCCTT+AGG | + | chr3_1:25746372-25746391 | None:intergenic | 10.0% |
| !! | GAGTATTATTATGAAAAAAA+TGG | - | chr3_1:25744883-25744902 | Msa0354480:intron | 15.0% |
| !! | TATTATTATGAAAAAAATGG+AGG | - | chr3_1:25744886-25744905 | Msa0354480:intron | 15.0% |
| !! | ATTATTATGAAAAAAATGGA+GGG | - | chr3_1:25744887-25744906 | Msa0354480:intron | 15.0% |
| !! | TCAGATATATTATAAAAACT+TGG | - | chr3_1:25745677-25745696 | Msa0354480:intron | 15.0% |
| !! | TTTATGAAAAACAAAGTTTA+GGG | + | chr3_1:25746401-25746420 | None:intergenic | 15.0% |
| !!! | GAGAATAAATCAAGATTTTT+TGG | - | chr3_1:25745240-25745259 | Msa0354480:intron | 20.0% |
| !! | TAATCTTATAGTGATATATG+AGG | + | chr3_1:25745449-25745468 | None:intergenic | 20.0% |
| !!! | AGTTCAATCACTTTTTAATT+TGG | + | chr3_1:25746076-25746095 | None:intergenic | 20.0% |
| !! | AAATTAAAAAGTGATTGAAC+TGG | - | chr3_1:25746075-25746094 | Msa0354480:CDS | 20.0% |
| !! | GTTTATGAAAAACAAAGTTT+AGG | + | chr3_1:25746402-25746421 | None:intergenic | 20.0% |
| !! | TAAATGTTTGCATATATGTA+GGG | - | chr3_1:25746428-25746447 | Msa0354480:CDS | 20.0% |
| !! | AAGATTACTTGTATCAATAT+TGG | + | chr3_1:25746575-25746594 | None:intergenic | 20.0% |
| !! | AGTACTCTATATAAATTATG+TGG | - | chr3_1:25746753-25746772 | Msa0354480:CDS | 20.0% |
| !!! | TTTTTTGATTGGTTGTTAAA+CGG | - | chr3_1:25746803-25746822 | Msa0354480:CDS | 20.0% |
| ! | ACAATAATGTCTTACCATAA+TGG | - | chr3_1:25744469-25744488 | Msa0354480:three_prime_UTR | 25.0% |
| !! | GTCACTAATTTTTACTCATA+AGG | - | chr3_1:25745099-25745118 | Msa0354480:intron | 25.0% |
| ! | ATTCTCTACGATTAAATTCA+TGG | + | chr3_1:25745226-25745245 | None:intergenic | 25.0% |
| ! | GAAAATTTCATATCCATCTT+GGG | + | chr3_1:25745282-25745301 | None:intergenic | 25.0% |
| ! | CTTACAATTGAAAATGCAAA+GGG | + | chr3_1:25745312-25745331 | None:intergenic | 25.0% |
| ! | ACTTACAATTGAAAATGCAA+AGG | + | chr3_1:25745313-25745332 | None:intergenic | 25.0% |
| ! | TATCTGAAAAATTGTCAAAG+AGG | + | chr3_1:25745664-25745683 | None:intergenic | 25.0% |
| ! | CATATACAGAAGGTAAAATT+AGG | + | chr3_1:25745738-25745757 | None:intergenic | 25.0% |
| !! | CTAATTTTACCTTCTGTATA+TGG | - | chr3_1:25745736-25745755 | Msa0354480:intron | 25.0% |
| !!! | AGAACTTTTTTTGTCAAAGA+GGG | - | chr3_1:25745838-25745857 | Msa0354480:intron | 25.0% |
| !!! | GGGAATGAACAATTTTAAAA+GGG | + | chr3_1:25746138-25746157 | None:intergenic | 25.0% |
| !! | AGGGAATGAACAATTTTAAA+AGG | + | chr3_1:25746137-25746156 | None:intergenic | 25.0% |
| !!! | GGAATGAACAATTTTAAAAG+AGG | - | chr3_1:25746139-25746158 | Msa0354480:CDS | 25.0% |
| ! | GTAAATGTTTGCATATATGT+AGG | - | chr3_1:25746427-25746446 | Msa0354480:CDS | 25.0% |
| ! | ACAAGTACTATTAAATGCTT+GGG | + | chr3_1:25746702-25746721 | None:intergenic | 25.0% |
| ! | TACAAGTACTATTAAATGCT+TGG | + | chr3_1:25746703-25746722 | None:intergenic | 25.0% |
| !! | AACTTCAAGCTTTAATCAAT+TGG | + | chr3_1:25746785-25746804 | None:intergenic | 25.0% |
| !!! | AAAGCTTGAAGTTTTTTGAT+TGG | - | chr3_1:25746792-25746811 | Msa0354480:CDS | 25.0% |
| TGTTATGATGCATACCATTA+TGG | + | chr3_1:25744486-25744505 | None:intergenic | 30.0% | |
| ATTATGAAAAAAATGGAGGG+TGG | - | chr3_1:25744890-25744909 | Msa0354480:intron | 30.0% | |
| !! | TTATTGATTTGCAGATTGCA+AGG | - | chr3_1:25745127-25745146 | Msa0354480:intron | 30.0% |
| AGGATTCCAGAATTTAAACT+AGG | - | chr3_1:25745147-25745166 | Msa0354480:intron | 30.0% | |
| GGATTCCAGAATTTAAACTA+GGG | - | chr3_1:25745148-25745167 | Msa0354480:intron | 30.0% | |
| GATTCCAGAATTTAAACTAG+GGG | - | chr3_1:25745149-25745168 | Msa0354480:intron | 30.0% | |
| GGAAAATTTCATATCCATCT+TGG | + | chr3_1:25745283-25745302 | None:intergenic | 30.0% | |
| TAGCATATGTCCTTGTTAAA+TGG | - | chr3_1:25745370-25745389 | Msa0354480:intron | 30.0% | |
| TAGTCTATGTCCATTTAACA+AGG | + | chr3_1:25745383-25745402 | None:intergenic | 30.0% | |
| !!! | TGAGGATCACTTTTTGTTTT+TGG | + | chr3_1:25745431-25745450 | None:intergenic | 30.0% |
| TTGCCATTAGAAATCACAAA+AGG | - | chr3_1:25745479-25745498 | Msa0354480:intron | 30.0% | |
| ! | TTGCCTTTTGTGATTTCTAA+TGG | + | chr3_1:25745485-25745504 | None:intergenic | 30.0% |
| AAAAATTGTCAAAGAGGCTT+AGG | + | chr3_1:25745658-25745677 | None:intergenic | 30.0% | |
| CTAATACATCCATATACAGA+AGG | + | chr3_1:25745748-25745767 | None:intergenic | 30.0% | |
| !!! | GAGAACTTTTTTTGTCAAAG+AGG | - | chr3_1:25745837-25745856 | Msa0354480:intron | 30.0% |
| AGGGTTATATTTAGAGATAG+AGG | - | chr3_1:25745898-25745917 | Msa0354480:intron | 30.0% | |
| GTTATATTTAGAGATAGAGG+TGG | - | chr3_1:25745901-25745920 | Msa0354480:intron | 30.0% | |
| GTTAACTCACACACAATTTA+GGG | + | chr3_1:25745993-25746012 | None:intergenic | 30.0% | |
| AGTTAACTCACACACAATTT+AGG | + | chr3_1:25745994-25746013 | None:intergenic | 30.0% | |
| AGTTAACTCACCTTGAATTA+AGG | - | chr3_1:25746117-25746136 | Msa0354480:CDS | 30.0% | |
| GTTAACTCACCTTGAATTAA+GGG | - | chr3_1:25746118-25746137 | Msa0354480:CDS | 30.0% | |
| TTGTTCATTCCCTTAATTCA+AGG | + | chr3_1:25746130-25746149 | None:intergenic | 30.0% | |
| ! | TTGTTTCTTACATTCAAGAC+CGG | + | chr3_1:25746895-25746914 | None:intergenic | 30.0% |
| ! | CTTGTCTATGCTATTTGCAT+GGG | + | chr3_1:25744590-25744609 | None:intergenic | 35.0% |
| AAGCACATGAATCAGAGTTA+TGG | + | chr3_1:25744933-25744952 | None:intergenic | 35.0% | |
| ATAACTCTGATTCATGTGCT+TGG | - | chr3_1:25744932-25744951 | Msa0354480:intron | 35.0% | |
| TCATGCTATCGCTATATCAA+TGG | + | chr3_1:25745078-25745097 | None:intergenic | 35.0% | |
| ATTGCATGTCAGAATCTTTG+TGG | + | chr3_1:25745199-25745218 | None:intergenic | 35.0% | |
| AATTTCATATCCATCTTGGG+AGG | + | chr3_1:25745279-25745298 | None:intergenic | 35.0% | |
| TGAAAATGCAAAGGGTAAGA+TGG | + | chr3_1:25745304-25745323 | None:intergenic | 35.0% | |
| !!! | TTGTTTTTGGACACAATGTG+AGG | + | chr3_1:25745418-25745437 | None:intergenic | 35.0% |
| !!! | CACGCTAACAGTTTTAAGAT+AGG | - | chr3_1:25746045-25746064 | Msa0354480:CDS | 35.0% |
| CTCTAATTGCAATGGAAAGA+TGG | + | chr3_1:25746483-25746502 | None:intergenic | 35.0% | |
| CATCTTTCCATTGCAATTAG+AGG | - | chr3_1:25746481-25746500 | Msa0354480:CDS | 35.0% | |
| TTCTTTGCCTCTAATTGCAA+TGG | + | chr3_1:25746491-25746510 | None:intergenic | 35.0% | |
| ! | TGATTGGTTGTTAAACGGAA+AGG | - | chr3_1:25746808-25746827 | Msa0354480:CDS | 35.0% |
| ! | AGATAATGAAGTATTCCCTC+CGG | - | chr3_1:25746873-25746892 | Msa0354480:exon | 35.0% |
| CAAATAAGTGGGAGAGAAAG+TGG | + | chr3_1:25744426-25744445 | None:intergenic | 40.0% | |
| CACTTTCTCTCCCACTTATT+TGG | - | chr3_1:25744424-25744443 | Msa0354480:three_prime_UTR | 40.0% | |
| AGTATGCCAGCCAAATAAGT+GGG | + | chr3_1:25744437-25744456 | None:intergenic | 40.0% | |
| TAGTATGCCAGCCAAATAAG+TGG | + | chr3_1:25744438-25744457 | None:intergenic | 40.0% | |
| TTTGGACATAGTATCCACAC+GGG | + | chr3_1:25744552-25744571 | None:intergenic | 40.0% | |
| CTTTGGACATAGTATCCACA+CGG | + | chr3_1:25744553-25744572 | None:intergenic | 40.0% | |
| ! | GCTTGTCTATGCTATTTGCA+TGG | + | chr3_1:25744591-25744610 | None:intergenic | 40.0% |
| GTGGTGTAAGAAAGAGTTGT+TGG | + | chr3_1:25744746-25744765 | None:intergenic | 40.0% | |
| CTCTTTCTTACACCACAAGA+AGG | - | chr3_1:25744750-25744769 | Msa0354480:CDS | 40.0% | |
| CACAAGAAGGTCTCATATGA+CGG | - | chr3_1:25744763-25744782 | Msa0354480:CDS | 40.0% | |
| ! | GTGATCATCATCGTTTTCAG+TGG | + | chr3_1:25744794-25744813 | None:intergenic | 40.0% |
| AAACGATGATGATCACCATC+TGG | - | chr3_1:25744798-25744817 | Msa0354480:CDS | 40.0% | |
| TCAGTGATGAGGATGAGAAA+GGG | - | chr3_1:25744851-25744870 | Msa0354480:CDS | 40.0% | |
| AAAAAAATGGAGGGTGGAAG+AGG | - | chr3_1:25744896-25744915 | Msa0354480:intron | 40.0% | |
| CTGATTCATGTGCTTGGATT+TGG | - | chr3_1:25744938-25744957 | Msa0354480:intron | 40.0% | |
| GCAAGTTACTTGGAGAGTTA+TGG | - | chr3_1:25744963-25744982 | Msa0354480:intron | 40.0% | |
| ! | TGGAGAGTTATGGTGAGTTT+TGG | - | chr3_1:25744973-25744992 | Msa0354480:intron | 40.0% |
| !! | TCAAAGGAGATTTTGGGTGT+TGG | + | chr3_1:25745036-25745055 | None:intergenic | 40.0% |
| AACACCCAAAATCTCCTTTG+AGG | - | chr3_1:25745035-25745054 | Msa0354480:intron | 40.0% | |
| ! | CTCACCTCAAAGGAGATTTT+GGG | + | chr3_1:25745042-25745061 | None:intergenic | 40.0% |
| ! | ACTCACCTCAAAGGAGATTT+TGG | + | chr3_1:25745043-25745062 | None:intergenic | 40.0% |
| CCTTCCCCTAGTTTAAATTC+TGG | + | chr3_1:25745156-25745175 | None:intergenic | 40.0% | |
| CCAGAATTTAAACTAGGGGA+AGG | - | chr3_1:25745153-25745172 | Msa0354480:intron | 40.0% | |
| ATTTAAACTAGGGGAAGGAG+TGG | - | chr3_1:25745158-25745177 | Msa0354480:intron | 40.0% | |
| !!! | TATTTTAGTCCTCCTACGAG+AGG | - | chr3_1:25745927-25745946 | Msa0354480:intron | 40.0% |
| !! | ATTTTAGTCCTCCTACGAGA+GGG | - | chr3_1:25745928-25745947 | Msa0354480:intron | 40.0% |
| AATTGATAAGACCCTCTCGT+AGG | + | chr3_1:25745942-25745961 | None:intergenic | 40.0% | |
| GTGTAGATAGCAAGACATTG+AGG | + | chr3_1:25746240-25746259 | None:intergenic | 40.0% | |
| !! | CTCTGTATTTTGGGAATGCA+GGG | + | chr3_1:25746286-25746305 | None:intergenic | 40.0% |
| CTGCATTCCCAAAATACAGA+GGG | - | chr3_1:25746285-25746304 | Msa0354480:intron | 40.0% | |
| CATATGTAGCATCATCCCTA+AGG | - | chr3_1:25746353-25746372 | Msa0354480:CDS | 40.0% | |
| GCAAAGAATAAGCCCATGTA+TGG | - | chr3_1:25746503-25746522 | Msa0354480:CDS | 40.0% | |
| !! | CTTGAGTTCAAGCTTTGAAG+TGG | - | chr3_1:25746592-25746611 | Msa0354480:CDS | 40.0% |
| AACTTAGGCTTTACAAGTGC+TGG | + | chr3_1:25746620-25746639 | None:intergenic | 40.0% | |
| TAAAGCCTAAGTTCCATCAC+CGG | - | chr3_1:25746627-25746646 | Msa0354480:CDS | 40.0% | |
| GAACCACTATACATTCTACC+CGG | + | chr3_1:25746649-25746668 | None:intergenic | 40.0% | |
| TAAACGGAAAGGAGAGAAAG+TGG | - | chr3_1:25746819-25746838 | Msa0354480:CDS | 40.0% | |
| AGGAGAGAAAGTGGTAAGAA+AGG | - | chr3_1:25746828-25746847 | Msa0354480:CDS | 40.0% | |
| TTCTTACATTCAAGACCGGA+GGG | + | chr3_1:25746891-25746910 | None:intergenic | 40.0% | |
| TTTCTTACATTCAAGACCGG+AGG | + | chr3_1:25746892-25746911 | None:intergenic | 40.0% | |
| TTCTCTCCCACTTATTTGGC+TGG | - | chr3_1:25744428-25744447 | Msa0354480:three_prime_UTR | 45.0% | |
| !!! | AAGTTGATTCGGCGTCGTTT+TGG | + | chr3_1:25744624-25744643 | None:intergenic | 45.0% |
| CGTCATATGAGACCTTCTTG+TGG | + | chr3_1:25744765-25744784 | None:intergenic | 45.0% | |
| GTCAGTGATGAGGATGAGAA+AGG | - | chr3_1:25744850-25744869 | Msa0354480:CDS | 45.0% | |
| GGATTTGGCTGCAAGTTACT+TGG | - | chr3_1:25744953-25744972 | Msa0354480:intron | 45.0% | |
| !!! | AAGGAGATTTTGGGTGTTGG+AGG | + | chr3_1:25745033-25745052 | None:intergenic | 45.0% |
| AATTGACGCACTCACCTCAA+AGG | + | chr3_1:25745052-25745071 | None:intergenic | 45.0% | |
| TCATATTCGTCCTCCCAAGA+TGG | - | chr3_1:25745266-25745285 | Msa0354480:intron | 45.0% | |
| !! | TGTATTTTGGGAATGCAGGG+AGG | + | chr3_1:25746283-25746302 | None:intergenic | 45.0% |
| !! | CCTCTGTATTTTGGGAATGC+AGG | + | chr3_1:25746287-25746306 | None:intergenic | 45.0% |
| CCTGCATTCCCAAAATACAG+AGG | - | chr3_1:25746284-25746303 | Msa0354480:intron | 45.0% | |
| ! | CAGCACACCCTCTGTATTTT+GGG | + | chr3_1:25746295-25746314 | None:intergenic | 45.0% |
| ! | AGAGGGTGTGCTGGAATTTA+TGG | - | chr3_1:25746302-25746321 | Msa0354480:CDS | 45.0% |
| ! | GAGGGTGTGCTGGAATTTAT+GGG | - | chr3_1:25746303-25746322 | Msa0354480:CDS | 45.0% |
| AGGGTGTGCTGGAATTTATG+GGG | - | chr3_1:25746304-25746323 | Msa0354480:CDS | 45.0% | |
| AATAAGCCCATGTATGGTGC+TGG | - | chr3_1:25746509-25746528 | Msa0354480:CDS | 45.0% | |
| CTTCTTCCAGCACCATACAT+GGG | + | chr3_1:25746518-25746537 | None:intergenic | 45.0% | |
| ATGGAGGACATGCTAGATTC+TGG | - | chr3_1:25746539-25746558 | Msa0354480:CDS | 45.0% | |
| ! | GACATGCTAGATTCTGGAAG+AGG | - | chr3_1:25746545-25746564 | Msa0354480:CDS | 45.0% |
| AAAGCCTAAGTTCCATCACC+GGG | - | chr3_1:25746628-25746647 | Msa0354480:CDS | 45.0% | |
| CTATACATTCTACCCGGTGA+TGG | + | chr3_1:25746643-25746662 | None:intergenic | 45.0% | |
| TCACCGGGTAGAATGTATAG+TGG | - | chr3_1:25746643-25746662 | Msa0354480:CDS | 45.0% | |
| !!! | TTTGTTTTTTTTTTTTTTTA+AGG | - | chr3_1:25745874-25745893 | Msa0354480:intron | 5.0% |
| !! | AATATAGTAAAATAAAATAT+AGG | - | chr3_1:25746200-25746219 | Msa0354480:intron | 5.0% |
| !! | ATATAGTAAAATAAAATATA+GGG | - | chr3_1:25746201-25746220 | Msa0354480:intron | 5.0% |
| ACATACCAAACCTACCCGTG+TGG | - | chr3_1:25744535-25744554 | Msa0354480:three_prime_UTR | 50.0% | |
| AGTATCCACACGGGTAGGTT+TGG | + | chr3_1:25744543-25744562 | None:intergenic | 50.0% | |
| GACATAGTATCCACACGGGT+AGG | + | chr3_1:25744548-25744567 | None:intergenic | 50.0% | |
| TTTGCATGGGAGACTGTGGA+GGG | + | chr3_1:25744577-25744596 | None:intergenic | 50.0% | |
| ATTTGCATGGGAGACTGTGG+AGG | + | chr3_1:25744578-25744597 | None:intergenic | 50.0% | |
| GCTATTTGCATGGGAGACTG+TGG | + | chr3_1:25744581-25744600 | None:intergenic | 50.0% | |
| ! | CGGGGAGTGGAAAGTTGATT+CGG | + | chr3_1:25744635-25744654 | None:intergenic | 50.0% |
| CGATGATGATCACCATCTGG+TGG | - | chr3_1:25744801-25744820 | Msa0354480:CDS | 50.0% | |
| TGATAAGACCCTCTCGTAGG+AGG | + | chr3_1:25745939-25745958 | None:intergenic | 50.0% | |
| !! | AGGAGTGGGTTGCAATTGTG+GGG | + | chr3_1:25746263-25746282 | None:intergenic | 50.0% |
| !! | GAGGAGTGGGTTGCAATTGT+GGG | + | chr3_1:25746264-25746283 | None:intergenic | 50.0% |
| ! | CCAGCACACCCTCTGTATTT+TGG | + | chr3_1:25746296-25746315 | None:intergenic | 50.0% |
| ! | CCAAAATACAGAGGGTGTGC+TGG | - | chr3_1:25746293-25746312 | Msa0354480:CDS | 50.0% |
| GCTTCTTCCAGCACCATACA+TGG | + | chr3_1:25746519-25746538 | None:intergenic | 50.0% | |
| ! | GTATGGTGCTGGAAGAAGCA+TGG | - | chr3_1:25746520-25746539 | Msa0354480:CDS | 50.0% |
| !! | TCTACCCGGTGATGGAACTT+AGG | + | chr3_1:25746635-25746654 | None:intergenic | 50.0% |
| TTGCATGGGAGACTGTGGAG+GGG | + | chr3_1:25744576-25744595 | None:intergenic | 55.0% | |
| TTTCCACTCCCCGAACCGAT+CGG | - | chr3_1:25744642-25744661 | Msa0354480:CDS | 55.0% | |
| TTGTCCGATGGGTCTCCGAT+CGG | + | chr3_1:25744660-25744679 | None:intergenic | 55.0% | |
| GGAGACCCATCGGACAAATC+CGG | - | chr3_1:25744663-25744682 | Msa0354480:CDS | 55.0% | |
| AGTAGCGGCAAAGGGCAAAC+CGG | + | chr3_1:25744708-25744727 | None:intergenic | 55.0% | |
| AGAGGAGGAGTAGCGGCAAA+GGG | + | chr3_1:25744716-25744735 | None:intergenic | 55.0% | |
| AGAGTTGTTGGAGCCTCGAG+AGG | + | chr3_1:25744734-25744753 | None:intergenic | 55.0% | |
| CGTTGACGATCACCACCAGA+TGG | + | chr3_1:25744816-25744835 | None:intergenic | 55.0% | |
| GTGGTGATCGTCAACGACAG+TGG | - | chr3_1:25744820-25744839 | Msa0354480:CDS | 55.0% | |
| TGGCAGTGTGGTCAGTGATG+AGG | - | chr3_1:25744840-25744859 | Msa0354480:CDS | 55.0% | |
| GGGGAAGGAGTGGATAGAAC+TGG | - | chr3_1:25745168-25745187 | Msa0354480:intron | 55.0% | |
| !! | GGAGTGGGTTGCAATTGTGG+GGG | + | chr3_1:25746262-25746281 | None:intergenic | 55.0% |
| !! | GGAGGAGTGGGTTGCAATTG+TGG | + | chr3_1:25746265-25746284 | None:intergenic | 55.0% |
| TTGGGAATGCAGGGAGGAGT+GGG | + | chr3_1:25746277-25746296 | None:intergenic | 55.0% | |
| TTTGGGAATGCAGGGAGGAG+TGG | + | chr3_1:25746278-25746297 | None:intergenic | 55.0% | |
| CCACTTTCAGCGTAGAGCTC+AGG | + | chr3_1:25746455-25746474 | None:intergenic | 55.0% | |
| CCTGAGCTCTACGCTGAAAG+TGG | - | chr3_1:25746452-25746471 | Msa0354480:CDS | 55.0% | |
| ! | TGGTGCTGGAAGAAGCATGG+AGG | - | chr3_1:25746523-25746542 | Msa0354480:CDS | 55.0% |
| !! | ATGGGTCTCCGATCGGTTCG+GGG | + | chr3_1:25744653-25744672 | None:intergenic | 60.0% |
| ! | GATGGGTCTCCGATCGGTTC+GGG | + | chr3_1:25744654-25744673 | None:intergenic | 60.0% |
| CGATGGGTCTCCGATCGGTT+CGG | + | chr3_1:25744655-25744674 | None:intergenic | 60.0% | |
| CGAACCGATCGGAGACCCAT+CGG | - | chr3_1:25744653-25744672 | Msa0354480:CDS | 60.0% | |
| GTGGGCCGGATTTGTCCGAT+GGG | + | chr3_1:25744671-25744690 | None:intergenic | 60.0% | |
| CTGGGTTCTTGTTCGTGGGC+CGG | + | chr3_1:25744685-25744704 | None:intergenic | 60.0% | |
| CCGGCTGGGTTCTTGTTCGT+GGG | + | chr3_1:25744689-25744708 | None:intergenic | 60.0% | |
| CCCACGAACAAGAACCCAGC+CGG | - | chr3_1:25744686-25744705 | Msa0354480:CDS | 60.0% | |
| ACCGGCTGGGTTCTTGTTCG+TGG | + | chr3_1:25744690-25744709 | None:intergenic | 60.0% | |
| GAGAGGAGGAGTAGCGGCAA+AGG | + | chr3_1:25744717-25744736 | None:intergenic | 60.0% | |
| AGCCTCGAGAGGAGGAGTAG+CGG | + | chr3_1:25744723-25744742 | None:intergenic | 60.0% | |
| GTTGTTGGAGCCTCGAGAGG+AGG | + | chr3_1:25744731-25744750 | None:intergenic | 60.0% | |
| CGTCAACGACAGTGGCAGTG+TGG | - | chr3_1:25744828-25744847 | Msa0354480:CDS | 60.0% | |
| GGGAGACTGTGGAGGGGCTT+TGG | + | chr3_1:25744570-25744589 | None:intergenic | 65.0% | |
| !! | TCTCCGATCGGTTCGGGGAG+TGG | + | chr3_1:25744648-25744667 | None:intergenic | 65.0% |
| CGTGGGCCGGATTTGTCCGA+TGG | + | chr3_1:25744672-25744691 | None:intergenic | 65.0% | |
| CGGCAAAGGGCAAACCGGCT+GGG | + | chr3_1:25744703-25744722 | None:intergenic | 65.0% | |
| TGCCGCTACTCCTCCTCTCG+AGG | - | chr3_1:25744718-25744737 | Msa0354480:CDS | 65.0% | |
| GCGGCAAAGGGCAAACCGGC+TGG | + | chr3_1:25744704-25744723 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 25744396 | 25746952 | 25744396 | ID=Msa0354480;Name=Msa0354480 |
| chr3_1 | mRNA | 25744396 | 25746952 | 25744396 | ID=Msa0354480-mRNA-1;Parent=Msa0354480;Name=Msa0354480-mRNA-1;_AED=0.03;_eAED=0.03;_QI=79|1|1|1|1|1|3|216|351 |
| chr3_1 | exon | 25744396 | 25744899 | 25744396 | ID=Msa0354480-mRNA-1:exon:5707;Parent=Msa0354480-mRNA-1 |
| chr3_1 | exon | 25746022 | 25746207 | 25746022 | ID=Msa0354480-mRNA-1:exon:5706;Parent=Msa0354480-mRNA-1 |
| chr3_1 | exon | 25746292 | 25746952 | 25746292 | ID=Msa0354480-mRNA-1:exon:5705;Parent=Msa0354480-mRNA-1 |
| chr3_1 | five_prime_UTR | 25746874 | 25746952 | 25746874 | ID=Msa0354480-mRNA-1:five_prime_utr;Parent=Msa0354480-mRNA-1 |
| chr3_1 | CDS | 25746292 | 25746873 | 25746292 | ID=Msa0354480-mRNA-1:cds;Parent=Msa0354480-mRNA-1 |
| chr3_1 | CDS | 25746022 | 25746207 | 25746022 | ID=Msa0354480-mRNA-1:cds;Parent=Msa0354480-mRNA-1 |
| chr3_1 | CDS | 25744612 | 25744899 | 25744612 | ID=Msa0354480-mRNA-1:cds;Parent=Msa0354480-mRNA-1 |
| chr3_1 | three_prime_UTR | 25744396 | 25744611 | 25744396 | ID=Msa0354480-mRNA-1:three_prime_utr;Parent=Msa0354480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
