Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1349730 | XP_003599451.1 | 96.000 | 350 | 14 | 0 | 1 | 350 | 1 | 350 | 0.0 | 706 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1349730 | G7IX31 | 96.000 | 350 | 14 | 0 | 1 | 350 | 1 | 350 | 0.0 | 706 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0827870 | Msa1349730 | 0.803870 | 2.836286e-49 | -8.615850e-47 |
| Msa0448150 | Msa1349730 | 0.927729 | 7.829150e-92 | -8.615850e-47 |
| Msa0354480 | Msa1349730 | 0.813696 | 2.245915e-51 | -8.615850e-47 |
| Msa1170890 | Msa1349730 | 0.811201 | 7.881118e-51 | -8.615850e-47 |
| Msa0486460 | Msa1349730 | 0.804170 | 2.456908e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1349730 | MtrunA17_Chr3g0090061 | 96.000 | 350 | 14 | 0 | 1 | 350 | 1 | 350 | 0.0 | 706 |
| Msa1349730 | MtrunA17_Chr6g0486001 | 30.723 | 166 | 109 | 4 | 174 | 335 | 131 | 294 | 1.78e-16 | 79.0 |
| Msa1349730 | MtrunA17_Chr6g0483441 | 25.121 | 207 | 132 | 6 | 129 | 329 | 87 | 276 | 1.24e-15 | 76.3 |
| Msa1349730 | MtrunA17_Chr4g0053001 | 25.161 | 155 | 114 | 2 | 177 | 329 | 158 | 312 | 1.31e-15 | 76.6 |
| Msa1349730 | MtrunA17_Chr2g0331671 | 25.080 | 311 | 189 | 10 | 29 | 335 | 27 | 297 | 2.35e-15 | 75.9 |
| Msa1349730 | MtrunA17_Chr8g0392551 | 29.032 | 155 | 98 | 4 | 182 | 329 | 129 | 278 | 1.56e-13 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1349730 | AT3G08490.1 | 39.385 | 325 | 130 | 8 | 29 | 350 | 11 | 271 | 8.95e-61 | 196 |
| Msa1349730 | AT3G24600.1 | 29.730 | 148 | 102 | 2 | 179 | 325 | 135 | 281 | 1.10e-13 | 71.2 |
| Msa1349730 | AT1G45688.1 | 23.984 | 246 | 148 | 7 | 129 | 350 | 111 | 341 | 1.77e-12 | 68.2 |
| Msa1349730 | AT5G42860.1 | 23.265 | 245 | 151 | 6 | 129 | 350 | 89 | 319 | 2.11e-12 | 67.8 |
| Msa1349730 | AT1G45688.2 | 30.252 | 119 | 71 | 3 | 129 | 247 | 111 | 217 | 5.02e-11 | 62.8 |
Find 106 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACTTTCTCTCCCACTTATT+TGG | 0.159382 | tig0010977:+45608 | Msa1349730:five_prime_UTR |
| ACTCACCTCAAAGGAGATTT+TGG | 0.164708 | tig0010977:-46221 | None:intergenic |
| CTGATTCATGTGCTTGGATT+TGG | 0.255227 | tig0010977:+46119 | Msa1349730:CDS |
| ATTCTCTACGATTAAATTCA+TGG | 0.258492 | tig0010977:-46404 | None:intergenic |
| CATCTTTCCATTGCAATTAG+AGG | 0.258908 | tig0010977:+47687 | Msa1349730:CDS |
| GAAAATTTCATATCCATCTT+AGG | 0.268221 | tig0010977:-46460 | None:intergenic |
| CCTTCCCCTAGTTTAAATTC+TGG | 0.277887 | tig0010977:-46334 | None:intergenic |
| GGTGGGTCTCAGATCGGTTC+GGG | 0.290372 | tig0010977:-45835 | None:intergenic |
| TGGAGAGTTATGGTGAGTTT+TGG | 0.299754 | tig0010977:+46154 | Msa1349730:CDS |
| AAGATTACTTGTATCAATAT+TGG | 0.308847 | tig0010977:-47778 | None:intergenic |
| TGTTATGATGCATACCATTA+TGG | 0.316626 | tig0010977:-45667 | None:intergenic |
| GGGAGACTGTGGAGGGGCTT+TGG | 0.317147 | tig0010977:-45751 | None:intergenic |
| AAGTTGATTCGGCGTCGTTT+TGG | 0.320691 | tig0010977:-45805 | None:intergenic |
| ATCGGTTGGGTTCTTGTTCA+TGG | 0.325212 | tig0010977:-45871 | None:intergenic |
| TACAAGTACTATTAAATGCT+TGG | 0.358819 | tig0010977:-47906 | None:intergenic |
| TTCTCTCCCACTTATTTGGC+TGG | 0.378005 | tig0010977:+45612 | Msa1349730:five_prime_UTR |
| GGATTTGGCTGCAAGTTACT+TGG | 0.400048 | tig0010977:+46134 | Msa1349730:CDS |
| ACAATAATGTCTTACCATAA+TGG | 0.402119 | tig0010977:+45653 | Msa1349730:exon |
| TCTCAGATCGGTTCGGGGAG+TGG | 0.410356 | tig0010977:-45829 | None:intergenic |
| TGAGACCCACCGGACAAATC+TGG | 0.410441 | tig0010977:+45847 | Msa1349730:CDS |
| CGGTGGGTCTCAGATCGGTT+CGG | 0.417077 | tig0010977:-45836 | None:intergenic |
| CTCTAATTGCAATGGAAAGA+TGG | 0.417898 | tig0010977:-47686 | None:intergenic |
| ACAAGTACTATTAAATGCTT+GGG | 0.425815 | tig0010977:-47905 | None:intergenic |
| AACTTAGGCTTTACAAGTGC+TGG | 0.443593 | tig0010977:-47823 | None:intergenic |
| GCAAGTTACTTGGAGAGTTA+TGG | 0.444531 | tig0010977:+46144 | Msa1349730:CDS |
| GTTTGTCTATGCTATTTGCA+TGG | 0.445227 | tig0010977:-45772 | None:intergenic |
| AGGAGAGAAAGTGGTAAGAA+AGG | 0.452505 | tig0010977:+48034 | Msa1349730:three_prime_UTR |
| AGTATCCACACGGGTAGGTT+TGG | 0.463829 | tig0010977:-45724 | None:intergenic |
| GTTCATGGGCCAGATTTGTC+CGG | 0.471770 | tig0010977:-45856 | None:intergenic |
| TGAAAATGCAAAGGGTAAGA+TGG | 0.472009 | tig0010977:-46482 | None:intergenic |
| TTCTTTGCCTCTAATTGCAA+TGG | 0.473022 | tig0010977:-47694 | None:intergenic |
| TCATATTCGTCCTCCTAAGA+TGG | 0.476180 | tig0010977:+46447 | Msa1349730:CDS |
| TCGGTTGGGTTCTTGTTCAT+GGG | 0.478466 | tig0010977:-45870 | None:intergenic |
| CCACTTTCTGCGTAGAGCTC+AGG | 0.480574 | tig0010977:-47658 | None:intergenic |
| CGGGGAGTGGAAAGTTGATT+CGG | 0.483375 | tig0010977:-45816 | None:intergenic |
| ATTGCATGTCAGAATCTTTG+TGG | 0.483834 | tig0010977:-46377 | None:intergenic |
| GGGGAAGGAGTGGATAGAAC+TGG | 0.484376 | tig0010977:+46349 | Msa1349730:CDS |
| GCTTCTTCCAGCACCATACA+TGG | 0.484750 | tig0010977:-47722 | None:intergenic |
| ATAACTCTGATTCATGTGCT+TGG | 0.487741 | tig0010977:+46113 | Msa1349730:CDS |
| AACACCCAAAATCTCCTTTG+AGG | 0.489450 | tig0010977:+46216 | Msa1349730:CDS |
| TCTACCCGGTGATGGAACTT+AGG | 0.492874 | tig0010977:-47838 | None:intergenic |
| GCAAAGAATAAGCCCATGTA+TGG | 0.500144 | tig0010977:+47709 | Msa1349730:CDS |
| AGGATTCCAGAATTTAAACT+AGG | 0.507497 | tig0010977:+46328 | Msa1349730:CDS |
| AATAAGCCCATGTATGGTGC+TGG | 0.508737 | tig0010977:+47715 | Msa1349730:CDS |
| CAAATAAGTGGGAGAGAAAG+TGG | 0.509490 | tig0010977:-45607 | None:intergenic |
| AGTAGCGGCAAAGGGAAAAT+CGG | 0.510840 | tig0010977:-45889 | None:intergenic |
| AAGCACATGAATCAGAGTTA+TGG | 0.515419 | tig0010977:-46111 | None:intergenic |
| TTGTTTCTTACATTCAAGAC+TGG | 0.515730 | tig0010977:-48098 | None:intergenic |
| TTGTCCGGTGGGTCTCAGAT+CGG | 0.526253 | tig0010977:-45841 | None:intergenic |
| ATGGAGGACATGCTAGATTC+TGG | 0.527804 | tig0010977:+47745 | Msa1349730:CDS |
| CTTGAGTTCAAGCTTTGAAG+TGG | 0.530401 | tig0010977:+47798 | Msa1349730:CDS |
| GACATGCTAGATTCTGGAAG+AGG | 0.530423 | tig0010977:+47751 | Msa1349730:CDS |
| TTTGCATGGGAGACTGTGGA+GGG | 0.530637 | tig0010977:-45758 | None:intergenic |
| CATGGGCCAGATTTGTCCGG+TGG | 0.532166 | tig0010977:-45853 | None:intergenic |
| CCTGAGCTCTACGCAGAAAG+TGG | 0.537897 | tig0010977:+47658 | Msa1349730:CDS |
| ATTTGCATGGGAGACTGTGG+AGG | 0.538727 | tig0010977:-45759 | None:intergenic |
| TGATTGGTTGTTAAACGGAA+AGG | 0.539350 | tig0010977:+48014 | Msa1349730:three_prime_UTR |
| GAGAGGATGAGTAGCGGCAA+AGG | 0.541672 | tig0010977:-45898 | None:intergenic |
| CGGCAAAGGGAAAATCGGTT+GGG | 0.544899 | tig0010977:-45884 | None:intergenic |
| CTTACAATTGAAAATGCAAA+GGG | 0.548971 | tig0010977:-46490 | None:intergenic |
| TAAACGGAAAGGAGAGAAAG+TGG | 0.549311 | tig0010977:+48025 | Msa1349730:three_prime_UTR |
| GGATTCCAGAATTTAAACTA+GGG | 0.550237 | tig0010977:+46329 | Msa1349730:CDS |
| TTTGTCTATGCTATTTGCAT+GGG | 0.550583 | tig0010977:-45771 | None:intergenic |
| GCGGCAAAGGGAAAATCGGT+TGG | 0.550798 | tig0010977:-45885 | None:intergenic |
| CTATACATTCTACCCGGTGA+TGG | 0.555955 | tig0010977:-47846 | None:intergenic |
| TTCTTACATTCAAGACTGGA+GGG | 0.557311 | tig0010977:-48094 | None:intergenic |
| TAAAGCCTAAGTTCCATCAC+CGG | 0.557567 | tig0010977:+47833 | Msa1349730:CDS |
| TTATTGATTTGCAGATTGCA+AGG | 0.558955 | tig0010977:+46308 | Msa1349730:intron |
| AATTTCATATCCATCTTAGG+AGG | 0.559576 | tig0010977:-46457 | None:intergenic |
| CCAGAATTTAAACTAGGGGA+AGG | 0.562426 | tig0010977:+46334 | Msa1349730:CDS |
| AAACGATGATGATCACCATC+TGG | 0.567321 | tig0010977:+45982 | Msa1349730:CDS |
| TTTCTTACATTCAAGACTGG+AGG | 0.569658 | tig0010977:-48095 | None:intergenic |
| ACTTACAATTGAAAATGCAA+AGG | 0.570017 | tig0010977:-46491 | None:intergenic |
| GTCAGTGATGAGGATGAGAA+AGG | 0.571099 | tig0010977:+46031 | Msa1349730:CDS |
| AGAGGATGAGTAGCGGCAAA+GGG | 0.572763 | tig0010977:-45897 | None:intergenic |
| AGTACTCTATATAAATTATG+TGG | 0.579930 | tig0010977:+47959 | Msa1349730:three_prime_UTR |
| ATGGGCCAGATTTGTCCGGT+GGG | 0.581255 | tig0010977:-45852 | None:intergenic |
| TAGTATGCCAGCCAAATAAG+TGG | 0.581592 | tig0010977:-45619 | None:intergenic |
| CACAAGAAGGTCTCATATGA+CGG | 0.585874 | tig0010977:+45947 | Msa1349730:CDS |
| TCACCGGGTAGAATGTATAG+TGG | 0.588847 | tig0010977:+47849 | Msa1349730:CDS |
| CTTCTTCCAGCACCATACAT+GGG | 0.599255 | tig0010977:-47721 | None:intergenic |
| ATTTAAACTAGGGGAAGGAG+TGG | 0.600866 | tig0010977:+46339 | Msa1349730:CDS |
| GCTATTTGCATGGGAGACTG+TGG | 0.602108 | tig0010977:-45762 | None:intergenic |
| TCAGTGATGAGGATGAGAAA+GGG | 0.611348 | tig0010977:+46032 | Msa1349730:CDS |
| AATTGACGCACTCACCTCAA+AGG | 0.615175 | tig0010977:-46230 | None:intergenic |
| CTTTGGACATAGTATCCACA+CGG | 0.620751 | tig0010977:-45734 | None:intergenic |
| CGAACCGATCTGAGACCCAC+CGG | 0.621862 | tig0010977:+45837 | Msa1349730:CDS |
| TGCCGCTACTCATCCTCTCG+AGG | 0.625496 | tig0010977:+45902 | Msa1349730:CDS |
| AAAGCCTAAGTTCCATCACC+GGG | 0.638761 | tig0010977:+47834 | Msa1349730:CDS |
| AGAGTTGTTGGAGCCTCGAG+AGG | 0.640159 | tig0010977:-45915 | None:intergenic |
| GACATAGTATCCACACGGGT+AGG | 0.641710 | tig0010977:-45729 | None:intergenic |
| CTGGTGATCGTCAACGACAG+TGG | 0.642585 | tig0010977:+46001 | Msa1349730:CDS |
| GATTCCAGAATTTAAACTAG+GGG | 0.643576 | tig0010977:+46330 | Msa1349730:CDS |
| AGTATGCCAGCCAAATAAGT+GGG | 0.646192 | tig0010977:-45618 | None:intergenic |
| GTATGGTGCTGGAAGAAGCA+TGG | 0.653626 | tig0010977:+47726 | Msa1349730:CDS |
| TGTCGTTGACGATCACCAGA+TGG | 0.661179 | tig0010977:-45997 | None:intergenic |
| TTGCATGGGAGACTGTGGAG+GGG | 0.663470 | tig0010977:-45757 | None:intergenic |
| CGTCAACGACAGTGGCAGTG+TGG | 0.664148 | tig0010977:+46009 | Msa1349730:CDS |
| GTGGGTCTCAGATCGGTTCG+GGG | 0.674894 | tig0010977:-45834 | None:intergenic |
| TGGCAGTGTGGTCAGTGATG+AGG | 0.678995 | tig0010977:+46021 | Msa1349730:CDS |
| ACATACCAAACCTACCCGTG+TGG | 0.693956 | tig0010977:+45719 | Msa1349730:CDS |
| GAACCACTATACATTCTACC+CGG | 0.700805 | tig0010977:-47852 | None:intergenic |
| CGTCATATGAGACCTTCTTG+TGG | 0.706770 | tig0010977:-45946 | None:intergenic |
| AGCCTCGAGAGGATGAGTAG+CGG | 0.724978 | tig0010977:-45904 | None:intergenic |
| TTTGGACATAGTATCCACAC+GGG | 0.750481 | tig0010977:-45733 | None:intergenic |
| TGGTGCTGGAAGAAGCATGG+AGG | 0.797032 | tig0010977:+47729 | Msa1349730:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTAATCACTAATTTTTT+TGG | + | tig0010977:46731-46750 | Msa1349730:intron | 10.0% |
| !!! | GTTTTTTTTTTTTTTTTTGA+AGG | + | tig0010977:47077-47096 | Msa1349730:intron | 10.0% |
| !!! | TTTTATTTTTTTTTTCCTTA+GGG | - | tig0010977:47574-47593 | None:intergenic | 10.0% |
| !!! | TTTTTATTTTTTTTTTCCTT+AGG | - | tig0010977:47575-47594 | None:intergenic | 10.0% |
| !! | GAGTATTATTATGAAAAAAA+TGG | + | tig0010977:46064-46083 | Msa1349730:CDS | 15.0% |
| !! | TATTATTATGAAAAAAATGG+AGG | + | tig0010977:46067-46086 | Msa1349730:CDS | 15.0% |
| !! | ATTATTATGAAAAAAATGGA+GGG | + | tig0010977:46068-46087 | Msa1349730:CDS | 15.0% |
| !! | TCAGATATATTATAAAAACT+TGG | + | tig0010977:46882-46901 | Msa1349730:intron | 15.0% |
| !!! | TTTTTTTTTTTTTTGAAGGA+AGG | + | tig0010977:47081-47100 | Msa1349730:intron | 15.0% |
| !!! | TTTTTTTTTTTTTGAAGGAA+GGG | + | tig0010977:47082-47101 | Msa1349730:intron | 15.0% |
| !! | TTTATGAAAAACAAAGTTTA+GGG | - | tig0010977:47607-47626 | None:intergenic | 15.0% |
| !!! | GAGAATAAATCAAGATTTTT+TGG | + | tig0010977:46421-46440 | Msa1349730:CDS | 20.0% |
| !! | TAATCTTATAGTGATATATG+AGG | - | tig0010977:46630-46649 | None:intergenic | 20.0% |
| !!! | AGTTCAATCACTTTTTAATT+TGG | - | tig0010977:47279-47298 | None:intergenic | 20.0% |
| !! | AAATTAAAAAGTGATTGAAC+TGG | + | tig0010977:47278-47297 | Msa1349730:intron | 20.0% |
| !! | GTTTATGAAAAACAAAGTTT+AGG | - | tig0010977:47608-47627 | None:intergenic | 20.0% |
| !! | TAAATGTTTGCATATATGTA+GGG | + | tig0010977:47634-47653 | Msa1349730:intron | 20.0% |
| !! | AAGATTACTTGTATCAATAT+TGG | - | tig0010977:47781-47800 | None:intergenic | 20.0% |
| !! | AGTACTCTATATAAATTATG+TGG | + | tig0010977:47959-47978 | Msa1349730:three_prime_UTR | 20.0% |
| !!! | TTTTTTGATTGGTTGTTAAA+CGG | + | tig0010977:48009-48028 | Msa1349730:three_prime_UTR | 20.0% |
| ! | ACAATAATGTCTTACCATAA+TGG | + | tig0010977:45653-45672 | Msa1349730:exon | 25.0% |
| !! | GTCACTAATTTTTACTCATA+AGG | + | tig0010977:46280-46299 | Msa1349730:intron | 25.0% |
| ! | ATTCTCTACGATTAAATTCA+TGG | - | tig0010977:46407-46426 | None:intergenic | 25.0% |
| ! | GAAAATTTCATATCCATCTT+AGG | - | tig0010977:46463-46482 | None:intergenic | 25.0% |
| ! | CTTACAATTGAAAATGCAAA+GGG | - | tig0010977:46493-46512 | None:intergenic | 25.0% |
| ! | ACTTACAATTGAAAATGCAA+AGG | - | tig0010977:46494-46513 | None:intergenic | 25.0% |
| ! | TATCTGAAAAATTGTCAAAG+AGG | - | tig0010977:46869-46888 | None:intergenic | 25.0% |
| ! | CATATACAGAAGGTAAAATT+AGG | - | tig0010977:46943-46962 | None:intergenic | 25.0% |
| !! | CTAATTTTACCTTCTGTATA+TGG | + | tig0010977:46941-46960 | Msa1349730:intron | 25.0% |
| !!! | AGAACTTTTTTTGTCAAAGA+GGG | + | tig0010977:47043-47062 | Msa1349730:intron | 25.0% |
| !!! | GGGAATGAACAATTTTAAAA+GGG | - | tig0010977:47341-47360 | None:intergenic | 25.0% |
| !! | AGGGAATGAACAATTTTAAA+AGG | - | tig0010977:47340-47359 | None:intergenic | 25.0% |
| ! | AGTTAACTCAACTTGAATTA+AGG | + | tig0010977:47320-47339 | Msa1349730:intron | 25.0% |
| ! | GTTAACTCAACTTGAATTAA+GGG | + | tig0010977:47321-47340 | Msa1349730:intron | 25.0% |
| !!! | GGAATGAACAATTTTAAAAG+AGG | + | tig0010977:47342-47361 | Msa1349730:intron | 25.0% |
| !!! | AATATAGGGCTTGTTTTTAT+AGG | + | tig0010977:47418-47437 | Msa1349730:intron | 25.0% |
| ! | GTAAATGTTTGCATATATGT+AGG | + | tig0010977:47633-47652 | Msa1349730:intron | 25.0% |
| ! | ACAAGTACTATTAAATGCTT+GGG | - | tig0010977:47908-47927 | None:intergenic | 25.0% |
| ! | TACAAGTACTATTAAATGCT+TGG | - | tig0010977:47909-47928 | None:intergenic | 25.0% |
| !! | AACTTCAAGCTTTTATCAAT+TGG | - | tig0010977:47991-48010 | None:intergenic | 25.0% |
| !!! | AAAGCTTGAAGTTTTTTGAT+TGG | + | tig0010977:47998-48017 | Msa1349730:three_prime_UTR | 25.0% |
| TGTTATGATGCATACCATTA+TGG | - | tig0010977:45670-45689 | None:intergenic | 30.0% | |
| ! | TTTGTCTATGCTATTTGCAT+GGG | - | tig0010977:45774-45793 | None:intergenic | 30.0% |
| ATTATGAAAAAAATGGAGGG+TGG | + | tig0010977:46071-46090 | Msa1349730:CDS | 30.0% | |
| !! | TTATTGATTTGCAGATTGCA+AGG | + | tig0010977:46308-46327 | Msa1349730:intron | 30.0% |
| AGGATTCCAGAATTTAAACT+AGG | + | tig0010977:46328-46347 | Msa1349730:CDS | 30.0% | |
| GGATTCCAGAATTTAAACTA+GGG | + | tig0010977:46329-46348 | Msa1349730:CDS | 30.0% | |
| GATTCCAGAATTTAAACTAG+GGG | + | tig0010977:46330-46349 | Msa1349730:CDS | 30.0% | |
| AATTTCATATCCATCTTAGG+AGG | - | tig0010977:46460-46479 | None:intergenic | 30.0% | |
| TAGCATATGTCCTTGTTAAA+TGG | + | tig0010977:46551-46570 | Msa1349730:intron | 30.0% | |
| TAGTCTATGTCCATTTAACA+AGG | - | tig0010977:46564-46583 | None:intergenic | 30.0% | |
| !!! | TGAGGATCACTTTTTGTTTT+TGG | - | tig0010977:46612-46631 | None:intergenic | 30.0% |
| TTGCCATTAGAAATCACAAA+AGG | + | tig0010977:46660-46679 | Msa1349730:intron | 30.0% | |
| ! | TTGCCTTTTGTGATTTCTAA+TGG | - | tig0010977:46666-46685 | None:intergenic | 30.0% |
| AAAAATTGTCAAAGAGGCTT+AGG | - | tig0010977:46863-46882 | None:intergenic | 30.0% | |
| CTAATACATCCATATACAGA+AGG | - | tig0010977:46953-46972 | None:intergenic | 30.0% | |
| !!! | GAGAACTTTTTTTGTCAAAG+AGG | + | tig0010977:47042-47061 | Msa1349730:intron | 30.0% |
| AGGGTTATATTTAGAGATAG+AGG | + | tig0010977:47101-47120 | Msa1349730:intron | 30.0% | |
| GTTATATTTAGAGATAGAGG+TGG | + | tig0010977:47104-47123 | Msa1349730:intron | 30.0% | |
| GTTAACTCACACACAATTTA+GGG | - | tig0010977:47196-47215 | None:intergenic | 30.0% | |
| AGTTAACTCACACACAATTT+AGG | - | tig0010977:47197-47216 | None:intergenic | 30.0% | |
| ! | TTGTTTCTTACATTCAAGAC+TGG | - | tig0010977:48101-48120 | None:intergenic | 30.0% |
| ! | GTTTGTCTATGCTATTTGCA+TGG | - | tig0010977:45775-45794 | None:intergenic | 35.0% |
| AAGCACATGAATCAGAGTTA+TGG | - | tig0010977:46114-46133 | None:intergenic | 35.0% | |
| ATAACTCTGATTCATGTGCT+TGG | + | tig0010977:46113-46132 | Msa1349730:CDS | 35.0% | |
| TCATGCTATCGCTATATCAA+TGG | - | tig0010977:46259-46278 | None:intergenic | 35.0% | |
| ATTGCATGTCAGAATCTTTG+TGG | - | tig0010977:46380-46399 | None:intergenic | 35.0% | |
| TGAAAATGCAAAGGGTAAGA+TGG | - | tig0010977:46485-46504 | None:intergenic | 35.0% | |
| !!! | TTGTTTTTGGACACAATGTG+AGG | - | tig0010977:46599-46618 | None:intergenic | 35.0% |
| !!! | CACGCTAACAGTTTTAAGAT+AGG | + | tig0010977:47248-47267 | Msa1349730:intron | 35.0% |
| CTCTAATTGCAATGGAAAGA+TGG | - | tig0010977:47689-47708 | None:intergenic | 35.0% | |
| CATCTTTCCATTGCAATTAG+AGG | + | tig0010977:47687-47706 | Msa1349730:CDS | 35.0% | |
| TTCTTTGCCTCTAATTGCAA+TGG | - | tig0010977:47697-47716 | None:intergenic | 35.0% | |
| ! | TGATTGGTTGTTAAACGGAA+AGG | + | tig0010977:48014-48033 | Msa1349730:three_prime_UTR | 35.0% |
| TTCTTACATTCAAGACTGGA+GGG | - | tig0010977:48097-48116 | None:intergenic | 35.0% | |
| TTTCTTACATTCAAGACTGG+AGG | - | tig0010977:48098-48117 | None:intergenic | 35.0% | |
| CAAATAAGTGGGAGAGAAAG+TGG | - | tig0010977:45610-45629 | None:intergenic | 40.0% | |
| CACTTTCTCTCCCACTTATT+TGG | + | tig0010977:45608-45627 | Msa1349730:five_prime_UTR | 40.0% | |
| AGTATGCCAGCCAAATAAGT+GGG | - | tig0010977:45621-45640 | None:intergenic | 40.0% | |
| TAGTATGCCAGCCAAATAAG+TGG | - | tig0010977:45622-45641 | None:intergenic | 40.0% | |
| TTTGGACATAGTATCCACAC+GGG | - | tig0010977:45736-45755 | None:intergenic | 40.0% | |
| CTTTGGACATAGTATCCACA+CGG | - | tig0010977:45737-45756 | None:intergenic | 40.0% | |
| GTGGTGCAAAAAAGAGTTGT+TGG | - | tig0010977:45930-45949 | None:intergenic | 40.0% | |
| !!! | CTCTTTTTTGCACCACAAGA+AGG | + | tig0010977:45934-45953 | Msa1349730:CDS | 40.0% |
| CACAAGAAGGTCTCATATGA+CGG | + | tig0010977:45947-45966 | Msa1349730:CDS | 40.0% | |
| ! | GTGATCATCATCGTTTTCAG+TGG | - | tig0010977:45978-45997 | None:intergenic | 40.0% |
| AAACGATGATGATCACCATC+TGG | + | tig0010977:45982-46001 | Msa1349730:CDS | 40.0% | |
| TCAGTGATGAGGATGAGAAA+GGG | + | tig0010977:46032-46051 | Msa1349730:CDS | 40.0% | |
| AAAAAAATGGAGGGTGGAAG+AGG | + | tig0010977:46077-46096 | Msa1349730:CDS | 40.0% | |
| CTGATTCATGTGCTTGGATT+TGG | + | tig0010977:46119-46138 | Msa1349730:CDS | 40.0% | |
| GCAAGTTACTTGGAGAGTTA+TGG | + | tig0010977:46144-46163 | Msa1349730:CDS | 40.0% | |
| ! | TGGAGAGTTATGGTGAGTTT+TGG | + | tig0010977:46154-46173 | Msa1349730:CDS | 40.0% |
| !! | TCAAAGGAGATTTTGGGTGT+TGG | - | tig0010977:46217-46236 | None:intergenic | 40.0% |
| AACACCCAAAATCTCCTTTG+AGG | + | tig0010977:46216-46235 | Msa1349730:CDS | 40.0% | |
| ! | CTCACCTCAAAGGAGATTTT+GGG | - | tig0010977:46223-46242 | None:intergenic | 40.0% |
| ! | ACTCACCTCAAAGGAGATTT+TGG | - | tig0010977:46224-46243 | None:intergenic | 40.0% |
| CCTTCCCCTAGTTTAAATTC+TGG | - | tig0010977:46337-46356 | None:intergenic | 40.0% | |
| CCAGAATTTAAACTAGGGGA+AGG | + | tig0010977:46334-46353 | Msa1349730:CDS | 40.0% | |
| ATTTAAACTAGGGGAAGGAG+TGG | + | tig0010977:46339-46358 | Msa1349730:CDS | 40.0% | |
| TCATATTCGTCCTCCTAAGA+TGG | + | tig0010977:46447-46466 | Msa1349730:CDS | 40.0% | |
| !!! | TATTTTAGTCCTCCTACGAG+AGG | + | tig0010977:47130-47149 | Msa1349730:intron | 40.0% |
| !! | ATTTTAGTCCTCCTACGAGA+GGG | + | tig0010977:47131-47150 | Msa1349730:intron | 40.0% |
| AATTGATAAGACCCTCTCGT+AGG | - | tig0010977:47145-47164 | None:intergenic | 40.0% | |
| !! | CTCTGTATTTTGGGAATGCA+GGG | - | tig0010977:47489-47508 | None:intergenic | 40.0% |
| CTGCATTCCCAAAATACAGA+GGG | + | tig0010977:47488-47507 | Msa1349730:intron | 40.0% | |
| CATATGTAGCATCATCCCTA+AGG | + | tig0010977:47556-47575 | Msa1349730:intron | 40.0% | |
| GCAAAGAATAAGCCCATGTA+TGG | + | tig0010977:47709-47728 | Msa1349730:CDS | 40.0% | |
| !! | CTTGAGTTCAAGCTTTGAAG+TGG | + | tig0010977:47798-47817 | Msa1349730:CDS | 40.0% |
| AACTTAGGCTTTACAAGTGC+TGG | - | tig0010977:47826-47845 | None:intergenic | 40.0% | |
| TAAAGCCTAAGTTCCATCAC+CGG | + | tig0010977:47833-47852 | Msa1349730:CDS | 40.0% | |
| GAACCACTATACATTCTACC+CGG | - | tig0010977:47855-47874 | None:intergenic | 40.0% | |
| TAAACGGAAAGGAGAGAAAG+TGG | + | tig0010977:48025-48044 | Msa1349730:three_prime_UTR | 40.0% | |
| AGGAGAGAAAGTGGTAAGAA+AGG | + | tig0010977:48034-48053 | Msa1349730:three_prime_UTR | 40.0% | |
| TTCTCTCCCACTTATTTGGC+TGG | + | tig0010977:45612-45631 | Msa1349730:five_prime_UTR | 45.0% | |
| !!! | AAGTTGATTCGGCGTCGTTT+TGG | - | tig0010977:45808-45827 | None:intergenic | 45.0% |
| TCGGTTGGGTTCTTGTTCAT+GGG | - | tig0010977:45873-45892 | None:intergenic | 45.0% | |
| ATCGGTTGGGTTCTTGTTCA+TGG | - | tig0010977:45874-45893 | None:intergenic | 45.0% | |
| AGTAGCGGCAAAGGGAAAAT+CGG | - | tig0010977:45892-45911 | None:intergenic | 45.0% | |
| CGTCATATGAGACCTTCTTG+TGG | - | tig0010977:45949-45968 | None:intergenic | 45.0% | |
| GTCAGTGATGAGGATGAGAA+AGG | + | tig0010977:46031-46050 | Msa1349730:CDS | 45.0% | |
| GGATTTGGCTGCAAGTTACT+TGG | + | tig0010977:46134-46153 | Msa1349730:CDS | 45.0% | |
| !!! | AAGGAGATTTTGGGTGTTGG+AGG | - | tig0010977:46214-46233 | None:intergenic | 45.0% |
| AATTGACGCACTCACCTCAA+AGG | - | tig0010977:46233-46252 | None:intergenic | 45.0% | |
| !! | TGTATTTTGGGAATGCAGGG+AGG | - | tig0010977:47486-47505 | None:intergenic | 45.0% |
| !! | CCTCTGTATTTTGGGAATGC+AGG | - | tig0010977:47490-47509 | None:intergenic | 45.0% |
| CCTGCATTCCCAAAATACAG+AGG | + | tig0010977:47487-47506 | Msa1349730:intron | 45.0% | |
| ! | CAGCACACCCTCTGTATTTT+GGG | - | tig0010977:47498-47517 | None:intergenic | 45.0% |
| ! | AGAGGGTGTGCTGGAATTTA+TGG | + | tig0010977:47505-47524 | Msa1349730:intron | 45.0% |
| ! | GAGGGTGTGCTGGAATTTAT+GGG | + | tig0010977:47506-47525 | Msa1349730:intron | 45.0% |
| AGGGTGTGCTGGAATTTATG+GGG | + | tig0010977:47507-47526 | Msa1349730:intron | 45.0% | |
| AATAAGCCCATGTATGGTGC+TGG | + | tig0010977:47715-47734 | Msa1349730:CDS | 45.0% | |
| CTTCTTCCAGCACCATACAT+GGG | - | tig0010977:47724-47743 | None:intergenic | 45.0% | |
| ATGGAGGACATGCTAGATTC+TGG | + | tig0010977:47745-47764 | Msa1349730:CDS | 45.0% | |
| ! | GACATGCTAGATTCTGGAAG+AGG | + | tig0010977:47751-47770 | Msa1349730:CDS | 45.0% |
| AAAGCCTAAGTTCCATCACC+GGG | + | tig0010977:47834-47853 | Msa1349730:CDS | 45.0% | |
| CTATACATTCTACCCGGTGA+TGG | - | tig0010977:47849-47868 | None:intergenic | 45.0% | |
| TCACCGGGTAGAATGTATAG+TGG | + | tig0010977:47849-47868 | Msa1349730:CDS | 45.0% | |
| !! | AATATAGTAAAATAAAATAT+AGG | + | tig0010977:47403-47422 | Msa1349730:intron | 5.0% |
| !! | ATATAGTAAAATAAAATATA+GGG | + | tig0010977:47404-47423 | Msa1349730:intron | 5.0% |
| ACATACCAAACCTACCCGTG+TGG | + | tig0010977:45719-45738 | Msa1349730:CDS | 50.0% | |
| AGTATCCACACGGGTAGGTT+TGG | - | tig0010977:45727-45746 | None:intergenic | 50.0% | |
| GACATAGTATCCACACGGGT+AGG | - | tig0010977:45732-45751 | None:intergenic | 50.0% | |
| TTTGCATGGGAGACTGTGGA+GGG | - | tig0010977:45761-45780 | None:intergenic | 50.0% | |
| ATTTGCATGGGAGACTGTGG+AGG | - | tig0010977:45762-45781 | None:intergenic | 50.0% | |
| GCTATTTGCATGGGAGACTG+TGG | - | tig0010977:45765-45784 | None:intergenic | 50.0% | |
| ! | CGGGGAGTGGAAAGTTGATT+CGG | - | tig0010977:45819-45838 | None:intergenic | 50.0% |
| GTTCATGGGCCAGATTTGTC+CGG | - | tig0010977:45859-45878 | None:intergenic | 50.0% | |
| CGGCAAAGGGAAAATCGGTT+GGG | - | tig0010977:45887-45906 | None:intergenic | 50.0% | |
| AGAGGATGAGTAGCGGCAAA+GGG | - | tig0010977:45900-45919 | None:intergenic | 50.0% | |
| TGTCGTTGACGATCACCAGA+TGG | - | tig0010977:46000-46019 | None:intergenic | 50.0% | |
| TGATAAGACCCTCTCGTAGG+AGG | - | tig0010977:47142-47161 | None:intergenic | 50.0% | |
| ! | CCAGCACACCCTCTGTATTT+TGG | - | tig0010977:47499-47518 | None:intergenic | 50.0% |
| ! | CCAAAATACAGAGGGTGTGC+TGG | + | tig0010977:47496-47515 | Msa1349730:intron | 50.0% |
| GCTTCTTCCAGCACCATACA+TGG | - | tig0010977:47725-47744 | None:intergenic | 50.0% | |
| ! | GTATGGTGCTGGAAGAAGCA+TGG | + | tig0010977:47726-47745 | Msa1349730:CDS | 50.0% |
| !! | TCTACCCGGTGATGGAACTT+AGG | - | tig0010977:47841-47860 | None:intergenic | 50.0% |
| TTGCATGGGAGACTGTGGAG+GGG | - | tig0010977:45760-45779 | None:intergenic | 55.0% | |
| TTGTCCGGTGGGTCTCAGAT+CGG | - | tig0010977:45844-45863 | None:intergenic | 55.0% | |
| TGAGACCCACCGGACAAATC+TGG | + | tig0010977:45847-45866 | Msa1349730:CDS | 55.0% | |
| ATGGGCCAGATTTGTCCGGT+GGG | - | tig0010977:45855-45874 | None:intergenic | 55.0% | |
| GCGGCAAAGGGAAAATCGGT+TGG | - | tig0010977:45888-45907 | None:intergenic | 55.0% | |
| GAGAGGATGAGTAGCGGCAA+AGG | - | tig0010977:45901-45920 | None:intergenic | 55.0% | |
| AGCCTCGAGAGGATGAGTAG+CGG | - | tig0010977:45907-45926 | None:intergenic | 55.0% | |
| AGAGTTGTTGGAGCCTCGAG+AGG | - | tig0010977:45918-45937 | None:intergenic | 55.0% | |
| CTGGTGATCGTCAACGACAG+TGG | + | tig0010977:46001-46020 | Msa1349730:CDS | 55.0% | |
| TGGCAGTGTGGTCAGTGATG+AGG | + | tig0010977:46021-46040 | Msa1349730:CDS | 55.0% | |
| GGGGAAGGAGTGGATAGAAC+TGG | + | tig0010977:46349-46368 | Msa1349730:CDS | 55.0% | |
| !! | GGAGGAGTGGGTTGCAATTG+TGG | - | tig0010977:47468-47487 | None:intergenic | 55.0% |
| TTGGGAATGCAGGGAGGAGT+GGG | - | tig0010977:47480-47499 | None:intergenic | 55.0% | |
| TTTGGGAATGCAGGGAGGAG+TGG | - | tig0010977:47481-47500 | None:intergenic | 55.0% | |
| CCACTTTCTGCGTAGAGCTC+AGG | - | tig0010977:47661-47680 | None:intergenic | 55.0% | |
| CCTGAGCTCTACGCAGAAAG+TGG | + | tig0010977:47658-47677 | Msa1349730:CDS | 55.0% | |
| ! | TGGTGCTGGAAGAAGCATGG+AGG | + | tig0010977:47729-47748 | Msa1349730:CDS | 55.0% |
| !! | TCTCAGATCGGTTCGGGGAG+TGG | - | tig0010977:45832-45851 | None:intergenic | 60.0% |
| !! | GTGGGTCTCAGATCGGTTCG+GGG | - | tig0010977:45837-45856 | None:intergenic | 60.0% |
| ! | GGTGGGTCTCAGATCGGTTC+GGG | - | tig0010977:45838-45857 | None:intergenic | 60.0% |
| CGGTGGGTCTCAGATCGGTT+CGG | - | tig0010977:45839-45858 | None:intergenic | 60.0% | |
| ! | CGAACCGATCTGAGACCCAC+CGG | + | tig0010977:45837-45856 | Msa1349730:CDS | 60.0% |
| CATGGGCCAGATTTGTCCGG+TGG | - | tig0010977:45856-45875 | None:intergenic | 60.0% | |
| TGCCGCTACTCATCCTCTCG+AGG | + | tig0010977:45902-45921 | Msa1349730:CDS | 60.0% | |
| CGTCAACGACAGTGGCAGTG+TGG | + | tig0010977:46009-46028 | Msa1349730:CDS | 60.0% | |
| GGGAGACTGTGGAGGGGCTT+TGG | - | tig0010977:45754-45773 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0010977 | gene | 45580 | 48157 | 45580 | ID=Msa1349730;Name=Msa1349730 |
| tig0010977 | mRNA | 45580 | 48157 | 45580 | ID=Msa1349730-mRNA-1;Parent=Msa1349730;Name=Msa1349730-mRNA-1;_AED=0.03;_eAED=0.03;_QI=79|1|1|1|1|1|3|215|350 |
| tig0010977 | exon | 45580 | 46237 | 45580 | ID=Msa1349730-mRNA-1:exon:7069;Parent=Msa1349730-mRNA-1 |
| tig0010977 | exon | 46322 | 46507 | 46322 | ID=Msa1349730-mRNA-1:exon:7070;Parent=Msa1349730-mRNA-1 |
| tig0010977 | exon | 47655 | 48157 | 47655 | ID=Msa1349730-mRNA-1:exon:7071;Parent=Msa1349730-mRNA-1 |
| tig0010977 | five_prime_UTR | 45580 | 45658 | 45580 | ID=Msa1349730-mRNA-1:five_prime_utr;Parent=Msa1349730-mRNA-1 |
| tig0010977 | CDS | 45659 | 46237 | 45659 | ID=Msa1349730-mRNA-1:cds;Parent=Msa1349730-mRNA-1 |
| tig0010977 | CDS | 46322 | 46507 | 46322 | ID=Msa1349730-mRNA-1:cds;Parent=Msa1349730-mRNA-1 |
| tig0010977 | CDS | 47655 | 47942 | 47655 | ID=Msa1349730-mRNA-1:cds;Parent=Msa1349730-mRNA-1 |
| tig0010977 | three_prime_UTR | 47943 | 48157 | 47943 | ID=Msa1349730-mRNA-1:three_prime_utr;Parent=Msa1349730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
