AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0355050

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0355050 MtrunA17_Chr3g0091641 92.308 572 36 4 1 569 1 567 0.0 1078
Msa0355050 MtrunA17_Chr4g0061021 65.104 576 146 7 10 560 19 564 0.0 730
Msa0355050 MtrunA17_Chr3g0127941 30.795 302 171 8 18 315 50 317 6.32e-31 128
Msa0355050 MtrunA17_Chr3g0127941 68.889 45 14 0 501 545 630 674 1.13e-12 70.9
Msa0355050 MtrunA17_Chr4g0030271 43.750 128 72 0 18 145 83 210 1.22e-28 121
Msa0355050 MtrunA17_Chr4g0030271 68.750 48 15 0 497 544 717 764 3.04e-15 79.3
Msa0355050 MtrunA17_Chr8g0345901 35.838 173 94 1 18 190 30 185 1.13e-27 117
Msa0355050 MtrunA17_Chr8g0345901 63.265 49 18 0 500 548 583 631 5.84e-12 68.6
Msa0355050 MtrunA17_Chr7g0276361 42.188 128 74 0 18 145 8 135 3.78e-27 115
Msa0355050 MtrunA17_Chr7g0276361 60.000 50 20 0 497 546 537 586 2.79e-13 72.8
Msa0355050 MtrunA17_Chr1g0181811 31.556 225 136 3 18 229 79 298 2.62e-26 114
Msa0355050 MtrunA17_Chr1g0181811 56.250 64 25 1 481 541 671 734 1.43e-12 70.9
Msa0355050 MtrunA17_Chr1g0161431 30.732 205 126 4 24 228 15 203 1.12e-21 99.4
Msa0355050 MtrunA17_Chr3g0091661 65.714 70 20 2 37 106 27 92 2.64e-21 89.0
Msa0355050 MtrunA17_Chr2g0294911 35.252 139 85 2 9 147 20 153 3.69e-20 94.4
Msa0355050 MtrunA17_Chr3g0123131 34.959 123 77 1 24 146 17 136 6.72e-20 93.6
Msa0355050 MtrunA17_Chr3g0137101 34.677 124 78 1 24 147 12 132 3.77e-19 91.3
Msa0355050 MtrunA17_Chr4g0067981 34.677 124 78 1 24 147 35 155 5.45e-19 90.9
Msa0355050 MtrunA17_Chr2g0304841 32.836 134 85 2 16 147 12 142 1.46e-18 89.7
Msa0355050 MtrunA17_Chr3g0134481 35.338 133 81 2 16 146 2 131 1.67e-18 84.0
Msa0355050 MtrunA17_Chr8g0376881 34.146 123 78 1 24 146 29 148 3.54e-18 87.8
Msa0355050 MtrunA17_Chr1g0149841 33.065 124 80 1 24 147 9 129 5.09e-18 87.4
Msa0355050 MtrunA17_Chr4g0074411 33.333 123 79 1 24 146 22 141 9.79e-18 86.7
Msa0355050 MtrunA17_Chr7g0275401 30.968 155 100 2 21 171 6 157 1.04e-17 84.0
Msa0355050 MtrunA17_Chr7g0275891 31.646 158 100 3 24 176 9 163 1.74e-17 84.3
Msa0355050 MtrunA17_Chr4g0074401 32.520 123 80 1 24 146 21 140 2.52e-17 85.5
Msa0355050 MtrunA17_Chr1g0149851 33.065 124 80 1 24 147 9 129 2.56e-17 85.5
Msa0355050 MtrunA17_Chr3g0134461 32.258 124 82 1 24 147 12 133 1.84e-12 66.6
Msa0355050 MtrunA17_Chr4g0049741 63.830 47 17 0 496 542 103 149 3.51e-12 68.2
Msa0355050 MtrunA17_Chr3g0132751 47.297 74 31 2 472 541 102 171 1.23e-11 66.6
Msa0355050 MtrunA17_Chr4g0074421 36.364 77 46 1 70 146 2 75 1.80e-11 63.5
Msa0355050 MtrunA17_Chr5g0400241 29.134 127 84 3 17 142 10 131 3.53e-11 65.9
Msa0355050 MtrunA17_Chr7g0256551 26.174 149 90 3 17 146 2 149 4.44e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0355050 AT5G61380.1 48.371 614 240 15 6 562 1 594 9.36e-170 496
Msa0355050 AT2G46790.3 42.188 128 74 0 18 145 31 158 1.08e-31 128
Msa0355050 AT2G46790.1 41.538 130 76 0 16 145 29 158 1.53e-31 128
Msa0355050 AT2G46790.1 69.565 46 14 0 500 545 416 461 2.83e-14 75.9
Msa0355050 AT5G24470.1 45.113 133 73 0 18 150 44 176 4.91e-31 127
Msa0355050 AT5G24470.1 55.172 58 26 0 487 544 495 552 4.22e-13 72.4
Msa0355050 AT5G60100.7 45.082 122 67 0 24 145 64 185 3.03e-28 117
Msa0355050 AT5G60100.6 45.082 122 67 0 24 145 64 185 3.03e-28 117
Msa0355050 AT5G60100.4 45.082 122 67 0 24 145 64 185 3.03e-28 117
Msa0355050 AT5G60100.5 45.082 122 67 0 24 145 64 185 6.05e-28 117
Msa0355050 AT5G60100.5 60.000 65 19 2 486 543 420 484 2.84e-13 72.8
Msa0355050 AT5G60100.3 45.082 122 67 0 24 145 64 185 6.05e-28 117
Msa0355050 AT5G60100.3 60.000 65 19 2 486 543 420 484 2.84e-13 72.8
Msa0355050 AT5G60100.1 45.082 122 67 0 24 145 64 185 6.05e-28 117
Msa0355050 AT5G60100.1 60.000 65 19 2 486 543 420 484 2.84e-13 72.8
Msa0355050 AT5G60100.2 45.082 122 67 0 24 145 64 185 1.81e-27 116
Msa0355050 AT5G60100.2 60.000 65 19 2 486 543 447 511 3.21e-13 72.8
Msa0355050 AT5G02810.1 41.406 128 75 0 18 145 72 199 7.46e-25 109
Msa0355050 AT5G02810.1 70.588 51 15 0 493 543 661 711 1.71e-15 80.5
Msa0355050 AT3G16857.2 35.714 126 78 1 22 147 35 157 4.47e-20 94.7
Msa0355050 AT3G16857.1 35.714 126 78 1 22 147 35 157 5.57e-20 94.4
Msa0355050 AT4G31920.1 35.537 121 75 1 24 144 17 134 5.84e-19 90.9
Msa0355050 AT2G25180.1 34.146 123 78 1 24 146 17 136 2.04e-18 89.4
Msa0355050 AT1G67710.1 33.333 123 79 1 24 146 11 130 6.94e-18 87.4
Msa0355050 AT2G01760.1 34.400 125 80 1 22 146 9 131 2.27e-16 81.6
Msa0355050 AT5G02810.2 70.588 51 15 0 493 543 517 567 1.07e-15 80.9
Msa0355050 AT2G46670.1 71.111 45 13 0 501 545 132 176 1.66e-15 75.5
Msa0355050 AT3G16857.3 39.326 89 51 1 59 147 2 87 4.62e-15 79.0
Msa0355050 AT2G46790.5 69.565 46 14 0 500 545 259 304 7.90e-15 76.3
Msa0355050 AT2G46790.4 69.565 46 14 0 500 545 259 304 7.90e-15 76.3
Msa0355050 AT2G46790.2 69.565 46 14 0 500 545 299 344 1.79e-14 75.5
Msa0355050 AT2G46790.2 63.415 41 15 0 105 145 1 41 1.47e-12 69.7
Msa0355050 AT3G62670.1 31.008 129 83 3 18 146 36 158 3.23e-14 75.5
Msa0355050 AT5G58080.1 34.091 132 81 3 16 145 8 135 4.71e-13 72.4
Msa0355050 AT2G01760.2 31.818 110 73 1 37 146 52 159 1.42e-12 70.1
Msa0355050 AT1G49190.2 27.419 124 87 1 26 149 36 156 2.22e-11 67.0
Msa0355050 AT1G49190.1 27.419 124 87 1 26 149 36 156 2.38e-11 66.2

Find 147 sgRNAs with CRISPR-Local

Find 425 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTGTTGCCTCGCATTAAT+TGG 0.221271 3_1:-28685324 Msa0355050:three_prime_UTR
CCGTCTGGCTTTGAGATCTT+TGG 0.222731 3_1:-28685212 Msa0355050:three_prime_UTR
CACATATTCATTGGGTAATA+GGG 0.232593 3_1:+28685743 None:intergenic
CCCTCACCTCTTGCTCTTGT+TGG 0.248511 3_1:+28688122 None:intergenic
GCACATATTCATTGGGTAAT+AGG 0.254453 3_1:+28685742 None:intergenic
ATCCTTAGTTCGCTCTTCTT+TGG 0.263156 3_1:+28686406 None:intergenic
GAACAATAGGTCCCATTTCT+TGG 0.266361 3_1:+28686052 None:intergenic
GAAGGGTTTGATTTGAATAA+TGG 0.275973 3_1:-28691023 Msa0355050:CDS
GGACAATGAACCCCATTTCT+TGG 0.284413 3_1:+28685971 None:intergenic
TTGTACTCCACCTGCATCTT+TGG 0.287125 3_1:-28686134 Msa0355050:CDS
ACTCCCGATGACATATAATA+TGG 0.329177 3_1:+28685908 None:intergenic
TCATTTACTCCATGGACTTC+AGG 0.346080 3_1:+28687277 None:intergenic
CATTTGAGGAAGCAGTATTA+AGG 0.347718 3_1:+28685237 None:intergenic
GGTTGTAAGCACATATTCAT+TGG 0.352891 3_1:+28685734 None:intergenic
AACTAAATCTTACTTATAAT+AGG 0.364003 3_1:+28689910 None:intergenic
CATCGGTGTCATCGGAGAAC+AGG 0.370393 3_1:+28688188 None:intergenic
GCGAACTAAGGATTGGGGTT+GGG 0.374057 3_1:-28686396 Msa0355050:CDS
CGAACTAAGGATTGGGGTTG+GGG 0.375308 3_1:-28686395 Msa0355050:CDS
TTCTGCGCAATTCTTTGTCT+CGG 0.375322 3_1:+28689935 None:intergenic
CATTCTGATGCATGATCATC+TGG 0.375477 3_1:+28687304 None:intergenic
GTCTCTATTCCTTGCTTCAA+TGG 0.379658 3_1:-28685349 Msa0355050:three_prime_UTR
AGTCTGATACATCCAAGAAA+TGG 0.380357 3_1:-28686064 Msa0355050:CDS
TGATGAAAATGAAGATGATC+AGG 0.381925 3_1:-28685450 Msa0355050:CDS
CAGCATGAACAATCCCTTCA+AGG 0.386500 3_1:+28686323 None:intergenic
AGTCTGATGCATCCAAGAAA+TGG 0.387353 3_1:-28685983 Msa0355050:CDS
CAAATGAACTCTTAAATTTG+TGG 0.387669 3_1:-28689709 Msa0355050:CDS
CTCTTGAGATGTTGTTATCA+AGG 0.389075 3_1:-28690906 Msa0355050:intron
GGTGTTGATGTGGATCTTAA+TGG 0.393805 3_1:-28685494 Msa0355050:CDS
GTCTGATGCATCCAAGAAAT+GGG 0.394772 3_1:-28685982 Msa0355050:CDS
TGGCCATCACTTGCTATATG+AGG 0.397845 3_1:-28685304 Msa0355050:three_prime_UTR
CATTTCGAGCTCAGAACAAT+AGG 0.399948 3_1:+28686039 None:intergenic
ATCTTCATGCCCTTCTTCTT+CGG 0.403681 3_1:+28689973 None:intergenic
TTGAATAATGGTAAGAAGAT+TGG 0.425156 3_1:-28691011 Msa0355050:CDS
TGCCCCAGCTATAATTGATA+AGG 0.426740 3_1:+28685263 None:intergenic
TTAGTCATTTCGACGACATT+GGG 0.436055 3_1:+28685409 None:intergenic
AGAAGAGCGAACTAAGGATT+GGG 0.437707 3_1:-28686402 Msa0355050:CDS
ACCATGTATACTATTGCTGC+TGG 0.439872 3_1:+28686177 None:intergenic
GATCCTTGACAGGATAATAT+AGG 0.441642 3_1:+28685373 None:intergenic
ATGAAGATGATCAGGGGAGC+TGG 0.451510 3_1:-28685442 Msa0355050:CDS
ATGTTAGATCTTTCAAGCTC+AGG 0.456754 3_1:+28685950 None:intergenic
ACACCCTTATCAATTATAGC+TGG 0.457558 3_1:-28685267 Msa0355050:three_prime_UTR
TATGAAACTTTCAACTGCAT+TGG 0.458849 3_1:+28685154 None:intergenic
GTTGTAAGCACATATTCATT+GGG 0.463517 3_1:+28685735 None:intergenic
TCTGCGCAATTCTTTGTCTC+GGG 0.465345 3_1:+28689936 None:intergenic
GTCTGATACATCCAAGAAAT+GGG 0.466748 3_1:-28686063 Msa0355050:CDS
AAGAGTTCATTTGTGCGTAA+AGG 0.468426 3_1:+28689719 None:intergenic
CTTAGTCATTTCGACGACAT+TGG 0.471322 3_1:+28685408 None:intergenic
CCCAGCAGCAATAGTATACA+TGG 0.474499 3_1:-28686178 Msa0355050:CDS
AGAAGCACTATTCAAGAGAC+AGG 0.475811 3_1:-28688154 Msa0355050:CDS
TGATACATTTGCGCCGATGA+AGG 0.476546 3_1:+28685869 None:intergenic
GCCCCAGCTATAATTGATAA+GGG 0.477003 3_1:+28685264 None:intergenic
CTTCTTTGGAGCAAATGAAA+AGG 0.478124 3_1:+28686420 None:intergenic
TATCCATATTATATGTCATC+GGG 0.479913 3_1:-28685911 Msa0355050:CDS
CAATGTCGTCGAAATGACTA+AGG 0.481430 3_1:-28685407 Msa0355050:exon
CTCCAAAGAAGAGCGAACTA+AGG 0.481928 3_1:-28686408 Msa0355050:CDS
AAGAAGAGCGAACTAAGGAT+TGG 0.487567 3_1:-28686403 Msa0355050:CDS
CAAAATTAAGTAAAGTTGAC+AGG 0.496846 3_1:-28685652 Msa0355050:CDS
GTTAAATTACGACTTTGATC+TGG 0.497463 3_1:-28688251 Msa0355050:CDS
CACCCTTATCAATTATAGCT+GGG 0.498049 3_1:-28685266 Msa0355050:three_prime_UTR
TCATGCCCTTCTTCTTCGGA+AGG 0.501684 3_1:+28689977 None:intergenic
TCAACTGCATTGGACATTGT+CGG 0.507869 3_1:+28685164 None:intergenic
CTGTTTGTATTGTTATCGCT+AGG 0.509038 3_1:+28688217 None:intergenic
CGAGTTATCATCGGTGTCAT+CGG 0.511992 3_1:+28688180 None:intergenic
CTGTTGTTGTGAAGTGCTTG+AGG 0.513289 3_1:-28689769 Msa0355050:CDS
CAGTTTGTCAGTAAGTTGAA+TGG 0.517062 3_1:-28685515 Msa0355050:CDS
TCATGTTATGATGCCTTCAT+CGG 0.517737 3_1:-28685882 Msa0355050:CDS
AGTTGGCCTTCCGAAGAAGA+AGG 0.517951 3_1:-28689983 Msa0355050:CDS
AAAGCCAGACGGATCATTTG+AGG 0.518079 3_1:+28685223 None:intergenic
AGAAAATTAGGTATGTCAAT+CGG 0.521151 3_1:-28685574 Msa0355050:CDS
CAGCATGATTCTGCAGGTCG+TGG 0.521808 3_1:+28685837 None:intergenic
CAACCAGGTCAGATTCCTAC+AGG 0.526809 3_1:-28685716 Msa0355050:CDS
GGAAACTATAGATCTCATAC+TGG 0.527599 3_1:-28690010 Msa0355050:CDS
GACATCATGCCGGTGGTATG+AGG 0.531091 3_1:+28685770 None:intergenic
GCTTCCTCAAATGATCCGTC+TGG 0.531930 3_1:-28685227 Msa0355050:three_prime_UTR
GGATGAACTTGAGCCTCCAC+AGG 0.532673 3_1:+28685679 None:intergenic
GATGAAAATGAAGATGATCA+GGG 0.534269 3_1:-28685449 Msa0355050:CDS
CCATGTATACTATTGCTGCT+GGG 0.538099 3_1:+28686178 None:intergenic
AATAGAGACAGATCCTTGAC+AGG 0.539660 3_1:+28685363 None:intergenic
AACTTCCATCCTCACATGTA+CGG 0.540871 3_1:+28686291 None:intergenic
AGCGAACTAAGGATTGGGGT+TGG 0.541428 3_1:-28686397 Msa0355050:CDS
GATCTCATACTGGCTGAAGT+TGG 0.542729 3_1:-28690000 Msa0355050:CDS
TGCGAGGCTTCCAAAGATGC+AGG 0.545928 3_1:+28686124 None:intergenic
TGCAAATGCTGATGCTGTTG+AGG 0.546641 3_1:-28687332 Msa0355050:CDS
ATGAATATGTGCTTACAACC+AGG 0.553880 3_1:-28685731 Msa0355050:CDS
GCTTCTCTTCGAGTTATCAT+CGG 0.556252 3_1:+28688171 None:intergenic
GAATGTCAGCCTGAAGTCCA+TGG 0.557310 3_1:-28687286 Msa0355050:CDS
TGTGGACGCACATGTGGAGA+AGG 0.558944 3_1:-28689691 Msa0355050:CDS
GTTGTGAAGTGCTTGAGGCT+CGG 0.559666 3_1:-28689764 Msa0355050:CDS
ATGTACCAGCATGATTCTGC+AGG 0.560138 3_1:+28685831 None:intergenic
CACGACCTGCAGAATCATGC+TGG 0.560739 3_1:-28685836 Msa0355050:CDS
CTGCATTGGACATTGTCGGC+AGG 0.561100 3_1:+28685168 None:intergenic
TGATGCACTGAATGCAGAGA+AGG 0.561148 3_1:-28690031 Msa0355050:CDS
AGGATAATATAGGAACAGAT+TGG 0.561875 3_1:+28685383 None:intergenic
ATCAGTCCAACAAGAGCAAG+AGG 0.563155 3_1:-28688128 Msa0355050:intron
CTGGCTGATCATTTACTCCA+TGG 0.563740 3_1:+28687269 None:intergenic
TAAATTTGTGGACGCACATG+TGG 0.565713 3_1:-28689697 Msa0355050:CDS
TCTATTGAACTGATAAAAGC+AGG 0.566168 3_1:-28685119 Msa0355050:three_prime_UTR
TTATCCATATTATATGTCAT+CGG 0.573399 3_1:-28685912 Msa0355050:CDS
CAGTCATGGCCATCCTGTGG+AGG 0.575525 3_1:-28685692 Msa0355050:CDS
GAAAGACGGCCTCGTGTGAG+AGG 0.576002 3_1:-28685539 Msa0355050:CDS
AATGGTAAGAAGATTGGTGA+TGG 0.578357 3_1:-28691005 Msa0355050:CDS
ATTCATTGGGTAATAGGGGT+AGG 0.578636 3_1:+28685748 None:intergenic
GTTCCTATATTATCCTGTCA+AGG 0.579035 3_1:-28685376 Msa0355050:three_prime_UTR
CATGTATACTATTGCTGCTG+GGG 0.579143 3_1:+28686179 None:intergenic
ATCGGTGTCATCGGAGAACA+GGG 0.581062 3_1:+28688189 None:intergenic
AGTTCAATAGAGCATAAGAA+TGG 0.582562 3_1:+28685131 None:intergenic
TCATCATATTCTATCGAAGG+AGG 0.583455 3_1:+28685467 None:intergenic
GGAAACAACTTGCTGAAAGA+CGG 0.584344 3_1:-28685553 Msa0355050:CDS
AATGAAGCATGTGCTCAACA+AGG 0.588403 3_1:-28686265 Msa0355050:CDS
TGCCGCCGTACATGTGAGGA+TGG 0.593042 3_1:-28686296 Msa0355050:CDS
GTTGGCCTTCCGAAGAAGAA+GGG 0.599234 3_1:-28689982 Msa0355050:CDS
ACATATTCATTGGGTAATAG+GGG 0.603859 3_1:+28685744 None:intergenic
CAAGGCGGTCCTCATACCAC+CGG 0.610673 3_1:-28685779 Msa0355050:CDS
ATGAAGCATGTGCTCAACAA+GGG 0.610896 3_1:-28686264 Msa0355050:CDS
AGATTCCTACAGGTCAGTCA+TGG 0.611131 3_1:-28685706 Msa0355050:CDS
GGTCAGTCATGGCCATCCTG+TGG 0.616555 3_1:-28685695 Msa0355050:CDS
TAAGTTGAATGGTGTTGATG+TGG 0.619859 3_1:-28685504 Msa0355050:CDS
TTGTTGATAGAAGTAAAGTG+AGG 0.622065 3_1:-28690980 Msa0355050:CDS
ACCCTTATCAATTATAGCTG+GGG 0.622759 3_1:-28685265 Msa0355050:three_prime_UTR
CATGGAGTAAATGATCAGCC+AGG 0.623977 3_1:-28687268 Msa0355050:intron
GATGGCCATGACTGACCTGT+AGG 0.625026 3_1:+28685701 None:intergenic
CACTACAATCATGTTCCACA+AGG 0.630620 3_1:-28685797 Msa0355050:CDS
GGACGCACATGTGGAGAAGG+AGG 0.632559 3_1:-28689688 Msa0355050:CDS
GAACTTGAGCCTCCACAGGA+TGG 0.633875 3_1:+28685683 None:intergenic
AAGCCTCATATAGCAAGTGA+TGG 0.635756 3_1:+28685301 None:intergenic
CCAAAGATCTCAAAGCCAGA+CGG 0.637509 3_1:+28685212 None:intergenic
GTGGTATGAGGACCGCCTTG+TGG 0.643073 3_1:+28685782 None:intergenic
CATTGGACATTGTCGGCAGG+AGG 0.643206 3_1:+28685171 None:intergenic
CATGTGGAGAAGGAGGCGCA+TGG 0.648174 3_1:-28689681 Msa0355050:intron
AGTGATGTCTGCACAAGATG+AGG 0.655473 3_1:-28689795 Msa0355050:CDS
AATGTCGTCGAAATGACTAA+GGG 0.656354 3_1:-28685406 Msa0355050:exon
ATGAAAATGAAGATGATCAG+GGG 0.656574 3_1:-28685448 Msa0355050:CDS
TGAAGCATGTGCTCAACAAG+GGG 0.671878 3_1:-28686263 Msa0355050:CDS
ATAGGGGTAGGACATCATGC+CGG 0.674173 3_1:+28685760 None:intergenic
GGGGTAGGACATCATGCCGG+TGG 0.676030 3_1:+28685763 None:intergenic
TACAATCATGTTCCACAAGG+CGG 0.678482 3_1:-28685794 Msa0355050:CDS
ACAAACTGTCCTCTCACACG+AGG 0.687418 3_1:+28685530 None:intergenic
TCTGATGCATCCAAGAAATG+GGG 0.690638 3_1:-28685981 Msa0355050:CDS
AGTGATGGCCAATTAATGCG+AGG 0.691472 3_1:+28685316 None:intergenic
TCTGATGCATGATCATCTGG+AGG 0.693536 3_1:+28687307 None:intergenic
GAGGCTTCCAAAGATGCAGG+TGG 0.696339 3_1:+28686127 None:intergenic
TTCCATCCTCACATGTACGG+CGG 0.698894 3_1:+28686294 None:intergenic
GAAGAGCGAACTAAGGATTG+GGG 0.699832 3_1:-28686401 Msa0355050:CDS
TGACCTGTAGGAATCTGACC+TGG 0.703449 3_1:+28685713 None:intergenic
ACAATGCCGCCGTACATGTG+AGG 0.726842 3_1:-28686300 Msa0355050:CDS
GGTGTCATCGGAGAACAGGG+TGG 0.764734 3_1:+28688192 None:intergenic
TGTCGGCAGGAGGTACACAG+AGG 0.781625 3_1:+28685181 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTTTATTTTTTTGGTA+TGG - chr3_1:28685053-28685072 Msa0355050:three_prime_UTR 10.0%
!!! TTGTTTTAAAAAAATTGTAT+TGG + chr3_1:28686773-28686792 None:intergenic 10.0%
!!! AAACAAATAATGATTTATTT+TGG - chr3_1:28689254-28689273 Msa0355050:intron 10.0%
!!! GAGGTTTATTTTTATTTTTT+TGG - chr3_1:28685048-28685067 Msa0355050:three_prime_UTR 15.0%
!!! TTTTTCTATGAATTAAAAAC+TGG - chr3_1:28685900-28685919 Msa0355050:CDS 15.0%
!! AACTAAATCTTACTTATAAT+AGG + chr3_1:28686197-28686216 None:intergenic 15.0%
!! GGCAATATTAAATTATTAAA+TGG - chr3_1:28686544-28686563 Msa0355050:intron 15.0%
!! TTCTAAATTTGTAAATACAA+TGG + chr3_1:28686635-28686654 None:intergenic 15.0%
!! AAAAAATTGTATTGGAAATA+GGG + chr3_1:28686765-28686784 None:intergenic 15.0%
!! AAAAAAATTGTATTGGAAAT+AGG + chr3_1:28686766-28686785 None:intergenic 15.0%
!! TTTCAAATTAATTCAAACTA+AGG + chr3_1:28686886-28686905 None:intergenic 15.0%
!!! TTAGTTTGAATTAATTTGAA+AGG - chr3_1:28686885-28686904 Msa0355050:intron 15.0%
!! TTATAATATTCTAACATGTA+TGG - chr3_1:28686979-28686998 Msa0355050:intron 15.0%
!! TATAATATTCTAACATGTAT+GGG - chr3_1:28686980-28686999 Msa0355050:intron 15.0%
!! CTATGATTTGATATAAAATA+TGG + chr3_1:28687223-28687242 None:intergenic 15.0%
!!! TATTTTATATCAAATCATAG+AGG - chr3_1:28687223-28687242 Msa0355050:intron 15.0%
!!! TCATTATTTGTTTAGTTTTA+TGG + chr3_1:28689247-28689266 None:intergenic 15.0%
!! AAAAAATCTGTTGAAAATTT+GGG + chr3_1:28689560-28689579 None:intergenic 15.0%
!! TAAAAAATCTGTTGAAAATT+TGG + chr3_1:28689561-28689580 None:intergenic 15.0%
!!! AAATTTTCAACAGATTTTTT+AGG - chr3_1:28689560-28689579 Msa0355050:intron 15.0%
!!! TTTGTATTTTTAGTAAAGAG+AGG - chr3_1:28685029-28685048 Msa0355050:three_prime_UTR 20.0%
!!! TATTGATTTTGTTATTCCTA+AGG - chr3_1:28685929-28685948 Msa0355050:CDS 20.0%
!!! ATTGATTTTGTTATTCCTAA+GGG - chr3_1:28685930-28685949 Msa0355050:CDS 20.0%
!! AAATTATTAAATGGATGTAG+AGG - chr3_1:28686553-28686572 Msa0355050:intron 20.0%
!! GTGATAACAAAAAATGAAAA+TGG + chr3_1:28686675-28686694 None:intergenic 20.0%
!! AAAACATAATGATAACTATC+TGG + chr3_1:28687141-28687160 None:intergenic 20.0%
!! GTATTAAGAAAAGTAGTTAA+TGG - chr3_1:28687298-28687317 Msa0355050:CDS 20.0%
!! TATGAGGTCAATAATTATAA+GGG + chr3_1:28687372-28687391 None:intergenic 20.0%
!!! AGATTTTCATATGAACTTAT+GGG - chr3_1:28687636-28687655 Msa0355050:intron 20.0%
!! ATCAACCATACAATATAATA+TGG - chr3_1:28687660-28687679 Msa0355050:intron 20.0%
!! ACTTTCCATATTATATTGTA+TGG + chr3_1:28687668-28687687 None:intergenic 20.0%
!! ATATAATATGGAAAGTAGAA+TGG - chr3_1:28687672-28687691 Msa0355050:intron 20.0%
!!! AATAGCTTTTATATTTTTGC+TGG - chr3_1:28687804-28687823 Msa0355050:intron 20.0%
!!! CATAGATTAATCAATTTTCA+AGG + chr3_1:28688065-28688084 None:intergenic 20.0%
!! AGTGTAATTTAAGAAATCTT+CGG + chr3_1:28688090-28688109 None:intergenic 20.0%
!! AGATTTCTTAAATTACACTT+TGG - chr3_1:28688091-28688110 Msa0355050:intron 20.0%
!! TATTGCATTTACAATGAAAA+GGG + chr3_1:28688191-28688210 None:intergenic 20.0%
!! ATATTGCATTTACAATGAAA+AGG + chr3_1:28688192-28688211 None:intergenic 20.0%
!!! TATGATAAATTGTTGATTAC+TGG - chr3_1:28688263-28688282 Msa0355050:CDS 20.0%
!!! TATGTATGTTCCTTTAAAAA+TGG + chr3_1:28688303-28688322 None:intergenic 20.0%
!!! GCAGCTTAAAATTTATTTTA+GGG + chr3_1:28688356-28688375 None:intergenic 20.0%
!!! TGCAGCTTAAAATTTATTTT+AGG + chr3_1:28688357-28688376 None:intergenic 20.0%
!! ACATTAATACAAAAACAAAG+AGG - chr3_1:28688470-28688489 Msa0355050:intron 20.0%
!!! CATATAGCTTTAATATCATT+AGG + chr3_1:28688661-28688680 None:intergenic 20.0%
!! AAAAATCTGTTGAAAATTTG+GGG + chr3_1:28689559-28689578 None:intergenic 20.0%
!! AGAGAGAAAACAATTAAAAA+TGG + chr3_1:28689634-28689653 None:intergenic 20.0%
!! TTATCCATATTATATGTCAT+CGG - chr3_1:28690192-28690211 Msa0355050:intron 20.0%
!!! AACTTTACTTAATTTTGCTT+CGG + chr3_1:28690449-28690468 None:intergenic 20.0%
!! TAACAAAAAATATGAAAGCA+CGG + chr3_1:28691011-28691030 None:intergenic 20.0%
!!! TTAAACATGGAATTTTTGAA+AGG + chr3_1:28691070-28691089 None:intergenic 20.0%
! TTGAATAATGGTAAGAAGAT+TGG - chr3_1:28685093-28685112 Msa0355050:three_prime_UTR 25.0%
! CCATTCATAATCAACAAATT+AGG + chr3_1:28685280-28685299 None:intergenic 25.0%
!!! CCTAATTTGTTGATTATGAA+TGG - chr3_1:28685277-28685296 Msa0355050:three_prime_UTR 25.0%
! AATCAAATTATCCTAGAGAA+CGG + chr3_1:28685528-28685547 None:intergenic 25.0%
!!! TTTATTGTTTTTCACCTTTG+AGG - chr3_1:28685571-28685590 Msa0355050:CDS 25.0%
! TGTCTAGATATATAAACAGT+CGG - chr3_1:28685619-28685638 Msa0355050:CDS 25.0%
!! ATATTGATTAATTTCCACCA+TGG - chr3_1:28685681-28685700 Msa0355050:CDS 25.0%
! AAAAATCCGTCATATAAACA+TGG + chr3_1:28685791-28685810 None:intergenic 25.0%
!!! ATGTTTATATGACGGATTTT+TGG - chr3_1:28685790-28685809 Msa0355050:CDS 25.0%
! AATATCAGAGTATGAACATA+CGG - chr3_1:28685871-28685890 Msa0355050:CDS 25.0%
!!! TTGATTTTGTTATTCCTAAG+GGG - chr3_1:28685931-28685950 Msa0355050:CDS 25.0%
!! CTTTAACTCGAGAATTTTAT+TGG + chr3_1:28686240-28686259 None:intergenic 25.0%
! AGTTAAAGCAAATTATGTTC+TGG - chr3_1:28686252-28686271 Msa0355050:CDS 25.0%
! CAAATGAACTCTTAAATTTG+TGG - chr3_1:28686395-28686414 Msa0355050:CDS 25.0%
! AAGATTCATAGATATGAAGT+TGG + chr3_1:28686459-28686478 None:intergenic 25.0%
!!! TTTAAATTTTGACAATCTGC+AGG + chr3_1:28686863-28686882 None:intergenic 25.0%
!! TGAATTAATTTGAAAGGTCT+TGG - chr3_1:28686891-28686910 Msa0355050:intron 25.0%
!!! TAGCATTTTGAGAATTTCTA+TGG - chr3_1:28687054-28687073 Msa0355050:intron 25.0%
!!! ATTTTGAGAATTTCTATGGT+AGG - chr3_1:28687058-28687077 Msa0355050:intron 25.0%
!! AATTTCTATGGTAGGTTTTA+AGG - chr3_1:28687066-28687085 Msa0355050:intron 25.0%
!! AAATTTCTGGATTTCTGATT+GGG - chr3_1:28687110-28687129 Msa0355050:intron 25.0%
!! GTTAGTGAGTCTTATATTAA+GGG + chr3_1:28687267-28687286 None:intergenic 25.0%
!!! TGTATATTAGCTTTTCGAAT+TGG - chr3_1:28687346-28687365 Msa0355050:intron 25.0%
! GTATGAGGTCAATAATTATA+AGG + chr3_1:28687373-28687392 None:intergenic 25.0%
!! GATTTTCATAGACATAAAGA+TGG + chr3_1:28687510-28687529 None:intergenic 25.0%
!!! GACTTTTTCAGATTATAAGT+TGG - chr3_1:28687584-28687603 Msa0355050:intron 25.0%
!! GAGATTTTCATATGAACTTA+TGG - chr3_1:28687635-28687654 Msa0355050:intron 25.0%
!! GATTTTCATATGAACTTATG+GGG - chr3_1:28687637-28687656 Msa0355050:intron 25.0%
! ATTTCAAATTGAAATCAGGA+AGG + chr3_1:28687787-28687806 None:intergenic 25.0%
!! AGCTATTTCAAATTGAAATC+AGG + chr3_1:28687791-28687810 None:intergenic 25.0%
! ATTGCATTTACAATGAAAAG+GGG + chr3_1:28688190-28688209 None:intergenic 25.0%
!! TTATCATACCAATAACTTGT+GGG + chr3_1:28688251-28688270 None:intergenic 25.0%
! TTTATCATACCAATAACTTG+TGG + chr3_1:28688252-28688271 None:intergenic 25.0%
!!! ATGCAAATGACCATTTTTAA+AGG - chr3_1:28688290-28688309 Msa0355050:intron 25.0%
! TAATACAAAAACAAAGAGGA+AGG - chr3_1:28688474-28688493 Msa0355050:intron 25.0%
! AATACAAAAACAAAGAGGAA+GGG - chr3_1:28688475-28688494 Msa0355050:intron 25.0%
! ATATAGTTATTGATAGAACC+CGG - chr3_1:28688929-28688948 Msa0355050:intron 25.0%
! TGGAATTCAATAACTAGAAT+GGG + chr3_1:28689227-28689246 None:intergenic 25.0%
! ATGGAATTCAATAACTAGAA+TGG + chr3_1:28689228-28689247 None:intergenic 25.0%
! AGATTAGAAAGTAGAAACTA+TGG + chr3_1:28689377-28689396 None:intergenic 25.0%
! TTCTACTTTCTAATCTGAAA+TGG - chr3_1:28689381-28689400 Msa0355050:intron 25.0%
!! ATAAAATTTTATTCAGCCTC+AGG + chr3_1:28689587-28689606 None:intergenic 25.0%
! TATCCATATTATATGTCATC+GGG - chr3_1:28690193-28690212 Msa0355050:intron 25.0%
! CAAAATTAAGTAAAGTTGAC+AGG - chr3_1:28690452-28690471 Msa0355050:intron 25.0%
!!! GCTGTTTTGATAAGAAAATT+AGG - chr3_1:28690518-28690537 Msa0355050:intron 25.0%
! AGAAAATTAGGTATGTCAAT+CGG - chr3_1:28690530-28690549 Msa0355050:intron 25.0%
!! TTTTCATCATATTCTATCGA+AGG + chr3_1:28690643-28690662 None:intergenic 25.0%
! GAAAAATAAACTCATTCATC+AGG + chr3_1:28691048-28691067 None:intergenic 25.0%
!! GAAGGGTTTGATTTGAATAA+TGG - chr3_1:28685081-28685100 Msa0355050:three_prime_UTR 30.0%
! TTGTTGATAGAAGTAAAGTG+AGG - chr3_1:28685124-28685143 Msa0355050:three_prime_UTR 30.0%
! AAAAACTTCTTGAGAGGTAT+TGG + chr3_1:28685172-28685191 None:intergenic 30.0%
AAGTGTAAAAACTTCTTGAG+AGG + chr3_1:28685178-28685197 None:intergenic 30.0%
TGTTAGCCATATTTGTATGT+TGG - chr3_1:28685386-28685405 Msa0355050:three_prime_UTR 30.0%
CACATCACATATACAACATA+TGG + chr3_1:28685598-28685617 None:intergenic 30.0%
TTAATAGGTGTTTACACCTA+TGG + chr3_1:28685737-28685756 None:intergenic 30.0%
AAAGCAAAATCTTAGACACA+GGG + chr3_1:28685850-28685869 None:intergenic 30.0%
AAAAGCAAAATCTTAGACAC+AGG + chr3_1:28685851-28685870 None:intergenic 30.0%
!!! TGATTTTGTTATTCCTAAGG+GGG - chr3_1:28685932-28685951 Msa0355050:CDS 30.0%
GACATTCAAAACATTGATGA+GGG + chr3_1:28686278-28686297 None:intergenic 30.0%
AGACATTCAAAACATTGATG+AGG + chr3_1:28686279-28686298 None:intergenic 30.0%
AAGTTGACAGAACAAAACAA+AGG + chr3_1:28686600-28686619 None:intergenic 30.0%
TGTAAATACAATGGTTGTGA+TGG + chr3_1:28686626-28686645 None:intergenic 30.0%
TCAGAAATCCAGAAATTTGT+AGG + chr3_1:28687108-28687127 None:intergenic 30.0%
! CAAATTTCTGGATTTCTGAT+TGG - chr3_1:28687109-28687128 Msa0355050:intron 30.0%
TCTTTACTTATCCAACCATT+TGG - chr3_1:28687160-28687179 Msa0355050:intron 30.0%
TACAAGATTAACCAAATGGT+TGG + chr3_1:28687174-28687193 None:intergenic 30.0%
ACCATTTGGTTAATCTTGTA+TGG - chr3_1:28687174-28687193 Msa0355050:intron 30.0%
CCATTTGGTTAATCTTGTAT+GGG - chr3_1:28687175-28687194 Msa0355050:intron 30.0%
CATTTGGTTAATCTTGTATG+GGG - chr3_1:28687176-28687195 Msa0355050:intron 30.0%
TGATATAAAATATGGCTTCC+CGG + chr3_1:28687215-28687234 None:intergenic 30.0%
! GGTTAGTGAGTCTTATATTA+AGG + chr3_1:28687268-28687287 None:intergenic 30.0%
TTTCTTAATACCCATGAATC+AGG + chr3_1:28687289-28687308 None:intergenic 30.0%
AATCACATAATGCAAGTATG+AGG + chr3_1:28687388-28687407 None:intergenic 30.0%
! TACGAAAGGGTCTTATATAT+AGG - chr3_1:28687432-28687451 Msa0355050:intron 30.0%
! ACGAAAGGGTCTTATATATA+GGG - chr3_1:28687433-28687452 Msa0355050:intron 30.0%
GTTAAATTACGACTTTGATC+TGG - chr3_1:28687853-28687872 Msa0355050:intron 30.0%
! TATCATACCAATAACTTGTG+GGG + chr3_1:28688250-28688269 None:intergenic 30.0%
!!! TATTTTAGGGCAACTAATTC+AGG + chr3_1:28688343-28688362 None:intergenic 30.0%
! AATAAATTTTAAGCTGCACG+AGG - chr3_1:28688359-28688378 Msa0355050:intron 30.0%
TTTGCAATAGTAGACTGAAA+AGG + chr3_1:28688758-28688777 None:intergenic 30.0%
TATAGTTATTGATAGAACCC+GGG - chr3_1:28688930-28688949 Msa0355050:intron 30.0%
ATGAAACAGAATTGCTTAAG+AGG - chr3_1:28689018-28689037 Msa0355050:intron 30.0%
TGAAACAGAATTGCTTAAGA+GGG - chr3_1:28689019-28689038 Msa0355050:intron 30.0%
! AATACTTTGGAAGAAGTAGT+TGG + chr3_1:28689194-28689213 None:intergenic 30.0%
ACATAAATTGCCTAAAAGGT+GGG + chr3_1:28689294-28689313 None:intergenic 30.0%
ACATGTAACTGAATTACTTG+TGG - chr3_1:28689332-28689351 Msa0355050:intron 30.0%
AGAAACTATGGAGTTATAGA+AGG + chr3_1:28689365-28689384 None:intergenic 30.0%
! ATTTCCAACAAAATCCCTTT+TGG + chr3_1:28689414-28689433 None:intergenic 30.0%
ATGCTAAAAAGAAACCTTGA+AGG - chr3_1:28689767-28689786 Msa0355050:CDS 30.0%
TGCTAAAAAGAAACCTTGAA+GGG - chr3_1:28689768-28689787 Msa0355050:CDS 30.0%
ACATATTCATTGGGTAATAG+GGG + chr3_1:28690363-28690382 None:intergenic 30.0%
CACATATTCATTGGGTAATA+GGG + chr3_1:28690364-28690383 None:intergenic 30.0%
GTTGTAAGCACATATTCATT+GGG + chr3_1:28690372-28690391 None:intergenic 30.0%
TGATGAAAATGAAGATGATC+AGG - chr3_1:28690654-28690673 Msa0355050:intron 30.0%
GATGAAAATGAAGATGATCA+GGG - chr3_1:28690655-28690674 Msa0355050:intron 30.0%
ATGAAAATGAAGATGATCAG+GGG - chr3_1:28690656-28690675 Msa0355050:intron 30.0%
AGGATAATATAGGAACAGAT+TGG + chr3_1:28690724-28690743 None:intergenic 30.0%
TATGAAACTTTCAACTGCAT+TGG + chr3_1:28690953-28690972 None:intergenic 30.0%
AGTTCAATAGAGCATAAGAA+TGG + chr3_1:28690976-28690995 None:intergenic 30.0%
TCTATTGAACTGATAAAAGC+AGG - chr3_1:28690985-28691004 Msa0355050:CDS 30.0%
!!! TTTTTTGGTATGGAGAGTGA+AGG - chr3_1:28685063-28685082 Msa0355050:three_prime_UTR 35.0%
!! TTTTTGGTATGGAGAGTGAA+GGG - chr3_1:28685064-28685083 Msa0355050:three_prime_UTR 35.0%
AATGGTAAGAAGATTGGTGA+TGG - chr3_1:28685099-28685118 Msa0355050:three_prime_UTR 35.0%
CTCTTGAGATGTTGTTATCA+AGG - chr3_1:28685198-28685217 Msa0355050:three_prime_UTR 35.0%
TTCTGGCCAACATACAAATA+TGG + chr3_1:28685395-28685414 None:intergenic 35.0%
! TTTTCCTAAAACCCTGATTC+TGG + chr3_1:28685412-28685431 None:intergenic 35.0%
!!! AGAATCAGGGTTTTAGGAAA+AGG - chr3_1:28685411-28685430 Msa0355050:CDS 35.0%
ATACAACATATGGACCTCAA+AGG + chr3_1:28685588-28685607 None:intergenic 35.0%
AGAAACATGGCAGGTTTAAT+AGG + chr3_1:28685752-28685771 None:intergenic 35.0%
! GTCATATAAACATGGTGTTG+CGG + chr3_1:28685783-28685802 None:intergenic 35.0%
GCAACACCATGTTTATATGA+CGG - chr3_1:28685782-28685801 Msa0355050:CDS 35.0%
ACTTTACATTAAACCCCCTT+AGG + chr3_1:28685948-28685967 None:intergenic 35.0%
TAAGGGGGTTTAATGTAAAG+TGG - chr3_1:28685947-28685966 Msa0355050:CDS 35.0%
GGAAACTATAGATCTCATAC+TGG - chr3_1:28686094-28686113 Msa0355050:CDS 35.0%
AAGAGTTCATTTGTGCGTAA+AGG + chr3_1:28686388-28686407 None:intergenic 35.0%
AGTTGGCGACAAATCAAAAA+TGG + chr3_1:28686504-28686523 None:intergenic 35.0%
TGTTTACAGACACAGTAAGT+TGG + chr3_1:28686521-28686540 None:intergenic 35.0%
CTTACTGTGTCTGTAAACAT+CGG - chr3_1:28686522-28686541 Msa0355050:intron 35.0%
TTACTGTGTCTGTAAACATC+GGG - chr3_1:28686523-28686542 Msa0355050:intron 35.0%
CCAGAAATTTGTAGGTAGAT+TGG + chr3_1:28687100-28687119 None:intergenic 35.0%
CCAATCTACCTACAAATTTC+TGG - chr3_1:28687097-28687116 Msa0355050:intron 35.0%
ATAATGATAACTATCTGGCC+TGG + chr3_1:28687136-28687155 None:intergenic 35.0%
CCCATACAAGATTAACCAAA+TGG + chr3_1:28687178-28687197 None:intergenic 35.0%
! GTGAGTCTTATATTAAGGGA+CGG + chr3_1:28687263-28687282 None:intergenic 35.0%
AGCAAGCAATAAAGTTGTCA+GGG - chr3_1:28687322-28687341 Msa0355050:CDS 35.0%
TATCCACCAATACTTACGAA+AGG - chr3_1:28687418-28687437 Msa0355050:intron 35.0%
ATCCACCAATACTTACGAAA+GGG - chr3_1:28687419-28687438 Msa0355050:intron 35.0%
TAAGACCCTTTCGTAAGTAT+TGG + chr3_1:28687427-28687446 None:intergenic 35.0%
GTCTTATATATAGGGACAGA+AGG - chr3_1:28687441-28687460 Msa0355050:intron 35.0%
AAGAGACAATCATCTTTCAC+AGG - chr3_1:28687613-28687632 Msa0355050:intron 35.0%
! ACACACACAACACTTTTATC+TGG - chr3_1:28687741-28687760 Msa0355050:intron 35.0%
!! TTATATTTTTGCTGGCAGCT+TGG - chr3_1:28687812-28687831 Msa0355050:intron 35.0%
CTGTTTGTATTGTTATCGCT+AGG + chr3_1:28687890-28687909 None:intergenic 35.0%
ACTTCATAAACTTCCTGATC+TGG + chr3_1:28688398-28688417 None:intergenic 35.0%
ATGTAGCTGGGTGAATAAAA+AGG + chr3_1:28688634-28688653 None:intergenic 35.0%
ATAGTTATTGATAGAACCCG+GGG - chr3_1:28688931-28688950 Msa0355050:intron 35.0%
AGTTGTTGGGATCAAAGTAT+GGG - chr3_1:28688966-28688985 Msa0355050:intron 35.0%
GGGTTGTTCTAACAATACTT+TGG + chr3_1:28689207-28689226 None:intergenic 35.0%
CATAAATTGCCTAAAAGGTG+GGG + chr3_1:28689293-28689312 None:intergenic 35.0%
GACATAAATTGCCTAAAAGG+TGG + chr3_1:28689295-28689314 None:intergenic 35.0%
GCAGACATAAATTGCCTAAA+AGG + chr3_1:28689298-28689317 None:intergenic 35.0%
! CAATCCAAAAGGGATTTTGT+TGG - chr3_1:28689407-28689426 Msa0355050:intron 35.0%
GCAACTCAAATGTCGTAATT+AGG + chr3_1:28689467-28689486 None:intergenic 35.0%
!!! TGGTTTTGTAAGGATGAGTT+AGG - chr3_1:28689533-28689552 Msa0355050:intron 35.0%
!!! AACAGATTTTTTAGGTCCTG+AGG - chr3_1:28689568-28689587 Msa0355050:intron 35.0%
!! CTTCTTTGGAGCAAATGAAA+AGG + chr3_1:28689687-28689706 None:intergenic 35.0%
GATCTCGAAGTATGCAAAAA+TGG - chr3_1:28689869-28689888 Msa0355050:intron 35.0%
AGTCTGATACATCCAAGAAA+TGG - chr3_1:28690040-28690059 Msa0355050:CDS 35.0%
GTCTGATACATCCAAGAAAT+GGG - chr3_1:28690041-28690060 Msa0355050:CDS 35.0%
! TTGTGATGCAAATTTTGTGC+AGG + chr3_1:28690100-28690119 None:intergenic 35.0%
ATGTTAGATCTTTCAAGCTC+AGG + chr3_1:28690157-28690176 None:intergenic 35.0%
ACTCCCGATGACATATAATA+TGG + chr3_1:28690199-28690218 None:intergenic 35.0%
TCATGTTATGATGCCTTCAT+CGG - chr3_1:28690222-28690241 Msa0355050:intron 35.0%
GCACATATTCATTGGGTAAT+AGG + chr3_1:28690365-28690384 None:intergenic 35.0%
GGTTGTAAGCACATATTCAT+TGG + chr3_1:28690373-28690392 None:intergenic 35.0%
ATGAATATGTGCTTACAACC+AGG - chr3_1:28690373-28690392 Msa0355050:intron 35.0%
! CAGTTTGTCAGTAAGTTGAA+TGG - chr3_1:28690589-28690608 Msa0355050:intron 35.0%
!! TAAGTTGAATGGTGTTGATG+TGG - chr3_1:28690600-28690619 Msa0355050:intron 35.0%
TCATCATATTCTATCGAAGG+AGG + chr3_1:28690640-28690659 None:intergenic 35.0%
TTAGTCATTTCGACGACATT+GGG + chr3_1:28690698-28690717 None:intergenic 35.0%
AATGTCGTCGAAATGACTAA+GGG - chr3_1:28690698-28690717 Msa0355050:intron 35.0%
GTTCCTATATTATCCTGTCA+AGG - chr3_1:28690728-28690747 Msa0355050:intron 35.0%
GATCCTTGACAGGATAATAT+AGG + chr3_1:28690734-28690753 None:intergenic 35.0%
! AACAGTTTTCCATTGAAGCA+AGG + chr3_1:28690767-28690786 None:intergenic 35.0%
ACACCCTTATCAATTATAGC+TGG - chr3_1:28690837-28690856 Msa0355050:intron 35.0%
CACCCTTATCAATTATAGCT+GGG - chr3_1:28690838-28690857 Msa0355050:intron 35.0%
ACCCTTATCAATTATAGCTG+GGG - chr3_1:28690839-28690858 Msa0355050:intron 35.0%
CATTTGAGGAAGCAGTATTA+AGG + chr3_1:28690870-28690889 None:intergenic 35.0%
TTTGTATGTTGGCCAGAATC+AGG - chr3_1:28685397-28685416 Msa0355050:exon 40.0%
TTGTATGTTGGCCAGAATCA+GGG - chr3_1:28685398-28685417 Msa0355050:exon 40.0%
GCGTCACAACTTAGATATTG+CGG + chr3_1:28685444-28685463 None:intergenic 40.0%
CACTACAGTCACAAATACCT+CGG + chr3_1:28685466-28685485 None:intergenic 40.0%
CAAATTATCCTAGAGAACGG+CGG + chr3_1:28685525-28685544 None:intergenic 40.0%
ATGAACCATTACATACGCCA+TGG + chr3_1:28685701-28685720 None:intergenic 40.0%
ATAGGTGTTTACACCTATGG+CGG + chr3_1:28685734-28685753 None:intergenic 40.0%
CTTAGACACAGGGTTATCAA+TGG + chr3_1:28685840-28685859 None:intergenic 40.0%
GGGGTTTAATGTAAAGTGGT+TGG - chr3_1:28685951-28685970 Msa0355050:CDS 40.0%
ATCTTCATGCCCTTCTTCTT+CGG + chr3_1:28686134-28686153 None:intergenic 40.0%
TTCTGCGCAATTCTTTGTCT+CGG + chr3_1:28686172-28686191 None:intergenic 40.0%
TAAATTTGTGGACGCACATG+TGG - chr3_1:28686407-28686426 Msa0355050:CDS 40.0%
ATGTAGAGGACTAACTAACG+TGG - chr3_1:28686567-28686586 Msa0355050:intron 40.0%
ATGGGGATGCTTAATATGTC+CGG - chr3_1:28687193-28687212 Msa0355050:intron 40.0%
GTCTTATATTAAGGGACGGA+GGG + chr3_1:28687259-28687278 None:intergenic 40.0%
! AGTCTTATATTAAGGGACGG+AGG + chr3_1:28687260-28687279 None:intergenic 40.0%
AGACTCACTAACCTGATTCA+TGG - chr3_1:28687275-28687294 Msa0355050:CDS 40.0%
GACTCACTAACCTGATTCAT+GGG - chr3_1:28687276-28687295 Msa0355050:CDS 40.0%
CAGCAAGCAATAAAGTTGTC+AGG - chr3_1:28687321-28687340 Msa0355050:CDS 40.0%
GCACTCTCTTGAACATTTCT+TGG + chr3_1:28687488-28687507 None:intergenic 40.0%
AAACTGACGTCAATCGTAGT+TGG - chr3_1:28687530-28687549 Msa0355050:intron 40.0%
AACTGACGTCAATCGTAGTT+GGG - chr3_1:28687531-28687550 Msa0355050:intron 40.0%
AGCAGAATCAAGCTAGACTA+TGG + chr3_1:28687709-28687728 None:intergenic 40.0%
! GCTTCTCTTCGAGTTATCAT+CGG + chr3_1:28687936-28687955 None:intergenic 40.0%
!! AGAAGCACTATTCAAGAGAC+AGG - chr3_1:28687950-28687969 Msa0355050:intron 40.0%
! AAGTTTGCACTCTGAAAGGT+TGG + chr3_1:28688130-28688149 None:intergenic 40.0%
GTCAAAGTTTGCACTCTGAA+AGG + chr3_1:28688134-28688153 None:intergenic 40.0%
TTGAAAACCATGACCAGATC+AGG - chr3_1:28688382-28688401 Msa0355050:intron 40.0%
TAAACTTCCTGATCTGGTCA+TGG + chr3_1:28688392-28688411 None:intergenic 40.0%
AAGGGTCACAATAGGAAAGT+GGG - chr3_1:28688493-28688512 Msa0355050:intron 40.0%
AAAACCAGAGGTGATCCAAT+CGG - chr3_1:28688531-28688550 Msa0355050:intron 40.0%
!! GTTTCTAGTTTCTACCCGAT+TGG + chr3_1:28688549-28688568 None:intergenic 40.0%
TCATTAGGCAGTATGTAGCT+GGG + chr3_1:28688646-28688665 None:intergenic 40.0%
ATCATTAGGCAGTATGTAGC+TGG + chr3_1:28688647-28688666 None:intergenic 40.0%
CATTCTGATGCATGATCATC+TGG + chr3_1:28688803-28688822 None:intergenic 40.0%
TCATTTACTCCATGGACTTC+AGG + chr3_1:28688830-28688849 None:intergenic 40.0%
! ATGAAGAAAAGAAGCACACC+TGG + chr3_1:28688857-28688876 None:intergenic 40.0%
CAGTTGTTGGGATCAAAGTA+TGG - chr3_1:28688965-28688984 Msa0355050:intron 40.0%
CATAATCCTCCTCAAGTACT+AGG + chr3_1:28688995-28689014 None:intergenic 40.0%
AACAGAATTGCTTAAGAGGG+AGG - chr3_1:28689022-28689041 Msa0355050:intron 40.0%
ACAGAATTGCTTAAGAGGGA+GGG - chr3_1:28689023-28689042 Msa0355050:intron 40.0%
! TATTTTCTCCTCTCTCAGTC+CGG - chr3_1:28689151-28689170 Msa0355050:intron 40.0%
AGTAGTTGGCCATTACTCAT+AGG + chr3_1:28689180-28689199 None:intergenic 40.0%
TGAAATGGCGTCAATCCAAA+AGG - chr3_1:28689396-28689415 Msa0355050:intron 40.0%
GAAATGGCGTCAATCCAAAA+GGG - chr3_1:28689397-28689416 Msa0355050:intron 40.0%
ATGTCGTAATTAGGCGACAA+GGG + chr3_1:28689458-28689477 None:intergenic 40.0%
AATGTCGTAATTAGGCGACA+AGG + chr3_1:28689459-28689478 None:intergenic 40.0%
!! ACATTTGAGTTGCCTTGTGT+TGG - chr3_1:28689474-28689493 Msa0355050:intron 40.0%
CCTTACAAAACCAGCTTGTA+AGG + chr3_1:28689526-28689545 None:intergenic 40.0%
!!! CCTTACAAGCTGGTTTTGTA+AGG - chr3_1:28689523-28689542 Msa0355050:intron 40.0%
ATCCTTAGTTCGCTCTTCTT+TGG + chr3_1:28689701-28689720 None:intergenic 40.0%
AAGAAGAGCGAACTAAGGAT+TGG - chr3_1:28689701-28689720 Msa0355050:CDS 40.0%
AGAAGAGCGAACTAAGGATT+GGG - chr3_1:28689702-28689721 Msa0355050:CDS 40.0%
AACTTCCATCCTCACATGTA+CGG + chr3_1:28689816-28689835 None:intergenic 40.0%
AATGAAGCATGTGCTCAACA+AGG - chr3_1:28689839-28689858 Msa0355050:intron 40.0%
ATGAAGCATGTGCTCAACAA+GGG - chr3_1:28689840-28689859 Msa0355050:intron 40.0%
CATGTATACTATTGCTGCTG+GGG + chr3_1:28689928-28689947 None:intergenic 40.0%
CCATGTATACTATTGCTGCT+GGG + chr3_1:28689929-28689948 None:intergenic 40.0%
ACCATGTATACTATTGCTGC+TGG + chr3_1:28689930-28689949 None:intergenic 40.0%
GAACAATAGGTCCCATTTCT+TGG + chr3_1:28690055-28690074 None:intergenic 40.0%
CATTTCGAGCTCAGAACAAT+AGG + chr3_1:28690068-28690087 None:intergenic 40.0%
AGTCTGATGCATCCAAGAAA+TGG - chr3_1:28690121-28690140 Msa0355050:intron 40.0%
GTCTGATGCATCCAAGAAAT+GGG - chr3_1:28690122-28690141 Msa0355050:intron 40.0%
TCTGATGCATCCAAGAAATG+GGG - chr3_1:28690123-28690142 Msa0355050:intron 40.0%
CACTACAATCATGTTCCACA+AGG - chr3_1:28690307-28690326 Msa0355050:intron 40.0%
TACAATCATGTTCCACAAGG+CGG - chr3_1:28690310-28690329 Msa0355050:intron 40.0%
ATTCATTGGGTAATAGGGGT+AGG + chr3_1:28690359-28690378 None:intergenic 40.0%
!! GGAAACAACTTGCTGAAAGA+CGG - chr3_1:28690551-28690570 Msa0355050:intron 40.0%
!! GGTGTTGATGTGGATCTTAA+TGG - chr3_1:28690610-28690629 Msa0355050:intron 40.0%
CTTAGTCATTTCGACGACAT+TGG + chr3_1:28690699-28690718 None:intergenic 40.0%
CAATGTCGTCGAAATGACTA+AGG - chr3_1:28690697-28690716 Msa0355050:intron 40.0%
AATAGAGACAGATCCTTGAC+AGG + chr3_1:28690744-28690763 None:intergenic 40.0%
GTCTCTATTCCTTGCTTCAA+TGG - chr3_1:28690755-28690774 Msa0355050:intron 40.0%
AACTGTTGCCTCGCATTAAT+TGG - chr3_1:28690780-28690799 Msa0355050:intron 40.0%
AAGCCTCATATAGCAAGTGA+TGG + chr3_1:28690806-28690825 None:intergenic 40.0%
GCCCCAGCTATAATTGATAA+GGG + chr3_1:28690843-28690862 None:intergenic 40.0%
TGCCCCAGCTATAATTGATA+AGG + chr3_1:28690844-28690863 None:intergenic 40.0%
TCAACTGCATTGGACATTGT+CGG + chr3_1:28690943-28690962 None:intergenic 40.0%
! TTGGCCAGAATCAGGGTTTT+AGG - chr3_1:28685405-28685424 Msa0355050:exon 45.0%
ATATCTAAGTTGTGACGCCG+AGG - chr3_1:28685446-28685465 Msa0355050:CDS 45.0%
TAGTGTGATCATCGCGATCA+AGG - chr3_1:28685481-28685500 Msa0355050:CDS 45.0%
TTCCACCATGGCGTATGTAA+TGG - chr3_1:28685693-28685712 Msa0355050:CDS 45.0%
AACCATTACATACGCCATGG+TGG + chr3_1:28685698-28685717 None:intergenic 45.0%
! CATTTTGTGTTAGCCGCCAT+AGG - chr3_1:28685718-28685737 Msa0355050:CDS 45.0%
TGGCATACTGCGTTGTATGA+TGG + chr3_1:28685820-28685839 None:intergenic 45.0%
TGATGCACTGAATGCAGAGA+AGG - chr3_1:28686073-28686092 Msa0355050:CDS 45.0%
! GATCTCATACTGGCTGAAGT+TGG - chr3_1:28686104-28686123 Msa0355050:CDS 45.0%
TCTGCGCAATTCTTTGTCTC+GGG + chr3_1:28686171-28686190 None:intergenic 45.0%
AGTGATGTCTGCACAAGATG+AGG - chr3_1:28686309-28686328 Msa0355050:CDS 45.0%
! CTGTTGTTGTGAAGTGCTTG+AGG - chr3_1:28686335-28686354 Msa0355050:CDS 45.0%
TGGGGATGCTTAATATGTCC+GGG - chr3_1:28687194-28687213 Msa0355050:intron 45.0%
!! GACCCTTTCGTAAGTATTGG+TGG + chr3_1:28687424-28687443 None:intergenic 45.0%
CAAGCTAGACTATGGTTGAG+AGG + chr3_1:28687701-28687720 None:intergenic 45.0%
!! CGAGTTATCATCGGTGTCAT+CGG + chr3_1:28687927-28687946 None:intergenic 45.0%
ATCAGTCCAACAAGAGCAAG+AGG - chr3_1:28687976-28687995 Msa0355050:intron 45.0%
CTATGTGCCCCACAAGTTAT+TGG - chr3_1:28688240-28688259 Msa0355050:CDS 45.0%
CAAAGAGGAAGGGTCACAAT+AGG - chr3_1:28688485-28688504 Msa0355050:intron 45.0%
GAAGGGTCACAATAGGAAAG+TGG - chr3_1:28688492-28688511 Msa0355050:intron 45.0%
GTGTCTATGCACAAAACCAG+AGG - chr3_1:28688519-28688538 Msa0355050:intron 45.0%
AAACCAGAGGTGATCCAATC+GGG - chr3_1:28688532-28688551 Msa0355050:intron 45.0%
TGCAAATGCTGATGCTGTTG+AGG - chr3_1:28688772-28688791 Msa0355050:intron 45.0%
TCTGATGCATGATCATCTGG+AGG + chr3_1:28688800-28688819 None:intergenic 45.0%
CTGGCTGATCATTTACTCCA+TGG + chr3_1:28688838-28688857 None:intergenic 45.0%
CATGGAGTAAATGATCAGCC+AGG - chr3_1:28688836-28688855 Msa0355050:intron 45.0%
ATTGATAGAACCCGGGGAAT+AGG - chr3_1:28688937-28688956 Msa0355050:intron 45.0%
GAATAGGTGGGTCAGTTGTT+GGG - chr3_1:28688953-28688972 Msa0355050:intron 45.0%
TATGGGAAGCCTAGTACTTG+AGG - chr3_1:28688983-28689002 Msa0355050:intron 45.0%
TTGCTTAAGAGGGAGGGAAT+TGG - chr3_1:28689029-28689048 Msa0355050:intron 45.0%
! ATTGGTTGCACTTGCTGAGT+TGG - chr3_1:28689047-28689066 Msa0355050:intron 45.0%
AGGACAGGTAGCAGAAATAG+TGG - chr3_1:28689079-28689098 Msa0355050:intron 45.0%
GGACAGGTAGCAGAAATAGT+GGG - chr3_1:28689080-28689099 Msa0355050:intron 45.0%
! AGGTAGCAGAAATAGTGGGA+AGG - chr3_1:28689084-28689103 Msa0355050:intron 45.0%
! TAGCAGAAATAGTGGGAAGG+AGG - chr3_1:28689087-28689106 Msa0355050:intron 45.0%
! AGCAGAAATAGTGGGAAGGA+GGG - chr3_1:28689088-28689107 Msa0355050:intron 45.0%
! CTCATCTTTCCCCACCTTTT+AGG - chr3_1:28689281-28689300 Msa0355050:intron 45.0%
TGTCGTAATTAGGCGACAAG+GGG + chr3_1:28689457-28689476 None:intergenic 45.0%
CAAAACCAGCTTGTAAGGTG+AGG + chr3_1:28689521-28689540 None:intergenic 45.0%
CTCCAAAGAAGAGCGAACTA+AGG - chr3_1:28689696-28689715 Msa0355050:CDS 45.0%
GAAGAGCGAACTAAGGATTG+GGG - chr3_1:28689703-28689722 Msa0355050:CDS 45.0%
CAGCATGAACAATCCCTTCA+AGG + chr3_1:28689784-28689803 None:intergenic 45.0%
TGAAGCATGTGCTCAACAAG+GGG - chr3_1:28689841-28689860 Msa0355050:intron 45.0%
CCCAGCAGCAATAGTATACA+TGG - chr3_1:28689926-28689945 Msa0355050:CDS 45.0%
TTGTACTCCACCTGCATCTT+TGG - chr3_1:28689970-28689989 Msa0355050:CDS 45.0%
GGACAATGAACCCCATTTCT+TGG + chr3_1:28690136-28690155 None:intergenic 45.0%
! TGATACATTTGCGCCGATGA+AGG + chr3_1:28690238-28690257 None:intergenic 45.0%
ATGTACCAGCATGATTCTGC+AGG + chr3_1:28690276-28690295 None:intergenic 45.0%
AGATTCCTACAGGTCAGTCA+TGG - chr3_1:28690398-28690417 Msa0355050:intron 45.0%
AGTGATGGCCAATTAATGCG+AGG + chr3_1:28690791-28690810 None:intergenic 45.0%
!! TGGCCATCACTTGCTATATG+AGG - chr3_1:28690800-28690819 Msa0355050:intron 45.0%
AAAGCCAGACGGATCATTTG+AGG + chr3_1:28690884-28690903 None:intergenic 45.0%
CCAAAGATCTCAAAGCCAGA+CGG + chr3_1:28690895-28690914 None:intergenic 45.0%
!!! TTTTTTTTTTTTTTTTACAT+TGG - chr3_1:28688896-28688915 Msa0355050:intron 5.0%
! ACCTGCCATGTTTCTGCCAT+CGG - chr3_1:28685757-28685776 Msa0355050:CDS 50.0%
!! AGTTGGCCTTCCGAAGAAGA+AGG - chr3_1:28686121-28686140 Msa0355050:CDS 50.0%
!! GTTGGCCTTCCGAAGAAGAA+GGG - chr3_1:28686122-28686141 Msa0355050:CDS 50.0%
TCATGCCCTTCTTCTTCGGA+AGG + chr3_1:28686130-28686149 None:intergenic 50.0%
! GTTGTGAAGTGCTTGAGGCT+CGG - chr3_1:28686340-28686359 Msa0355050:CDS 50.0%
TCTGGATTTCTGATTGGGCC+AGG - chr3_1:28687115-28687134 Msa0355050:intron 50.0%
!! ATCGGTGTCATCGGAGAACA+GGG + chr3_1:28687918-28687937 None:intergenic 50.0%
TCCAACAAGAGCAAGAGGTG+AGG - chr3_1:28687981-28688000 Msa0355050:intron 50.0%
CCAACAAGAGCAAGAGGTGA+GGG - chr3_1:28687982-28688001 Msa0355050:intron 50.0%
GAATGTCAGCCTGAAGTCCA+TGG - chr3_1:28688818-28688837 Msa0355050:intron 50.0%
ATAGAACCCGGGGAATAGGT+GGG - chr3_1:28688941-28688960 Msa0355050:intron 50.0%
GGAATAGGTGGGTCAGTTGT+TGG - chr3_1:28688952-28688971 Msa0355050:intron 50.0%
! TTGCACTTGCTGAGTTGGCA+GGG - chr3_1:28689052-28689071 Msa0355050:intron 50.0%
! GCAGAAATAGTGGGAAGGAG+GGG - chr3_1:28689089-28689108 Msa0355050:intron 50.0%
GTCCGGATGCCTATGAGTAA+TGG - chr3_1:28689168-28689187 Msa0355050:intron 50.0%
GGCCATTACTCATAGGCATC+CGG + chr3_1:28689173-28689192 None:intergenic 50.0%
CAAGGGGCAGATCGCAATAA+AGG + chr3_1:28689441-28689460 None:intergenic 50.0%
!! TGCCTTGTGTTGGCTTTGAG+AGG - chr3_1:28689484-28689503 Msa0355050:intron 50.0%
!! GCCTTGTGTTGGCTTTGAGA+GGG - chr3_1:28689485-28689504 Msa0355050:intron 50.0%
ACCCTCTCAAAGCCAACACA+AGG + chr3_1:28689489-28689508 None:intergenic 50.0%
!! TTGTGTTGGCTTTGAGAGGG+TGG - chr3_1:28689488-28689507 Msa0355050:intron 50.0%
AGCGAACTAAGGATTGGGGT+TGG - chr3_1:28689707-28689726 Msa0355050:CDS 50.0%
GCGAACTAAGGATTGGGGTT+GGG - chr3_1:28689708-28689727 Msa0355050:CDS 50.0%
CGAACTAAGGATTGGGGTTG+GGG - chr3_1:28689709-28689728 Msa0355050:CDS 50.0%
TTCCATCCTCACATGTACGG+CGG + chr3_1:28689813-28689832 None:intergenic 50.0%
! TTCGTAACGGTTTTGCTGCG+AGG + chr3_1:28689999-28690018 None:intergenic 50.0%
ATAGGGGTAGGACATCATGC+CGG + chr3_1:28690347-28690366 None:intergenic 50.0%
CAACCAGGTCAGATTCCTAC+AGG - chr3_1:28690388-28690407 Msa0355050:intron 50.0%
TGACCTGTAGGAATCTGACC+TGG + chr3_1:28690394-28690413 None:intergenic 50.0%
ACAAACTGTCCTCTCACACG+AGG + chr3_1:28690577-28690596 None:intergenic 50.0%
ATGAAGATGATCAGGGGAGC+TGG - chr3_1:28690662-28690681 Msa0355050:intron 50.0%
GCTTCCTCAAATGATCCGTC+TGG - chr3_1:28690877-28690896 Msa0355050:intron 50.0%
!! CCGTCTGGCTTTGAGATCTT+TGG - chr3_1:28690892-28690911 Msa0355050:intron 50.0%
ACCTTTGACCGCCGTTCTCT+AGG - chr3_1:28685514-28685533 Msa0355050:CDS 55.0%
TCCTAGAGAACGGCGGTCAA+AGG + chr3_1:28685518-28685537 None:intergenic 55.0%
!! AAACATGGTGTTGCGGCCGA+TGG + chr3_1:28685776-28685795 None:intergenic 55.0%
TGTGGACGCACATGTGGAGA+AGG - chr3_1:28686413-28686432 Msa0355050:CDS 55.0%
!! CATCGGTGTCATCGGAGAAC+AGG + chr3_1:28687919-28687938 None:intergenic 55.0%
CCCTCACCTCTTGCTCTTGT+TGG + chr3_1:28687985-28688004 None:intergenic 55.0%
CTACCCGATTGGATCACCTC+TGG + chr3_1:28688538-28688557 None:intergenic 55.0%
GATAGAACCCGGGGAATAGG+TGG - chr3_1:28688940-28688959 Msa0355050:intron 55.0%
AACTGACCCACCTATTCCCC+GGG + chr3_1:28688950-28688969 None:intergenic 55.0%
CAACTGACCCACCTATTCCC+CGG + chr3_1:28688951-28688970 None:intergenic 55.0%
GGGAAGCCTAGTACTTGAGG+AGG - chr3_1:28688986-28689005 Msa0355050:intron 55.0%
! GTTGCACTTGCTGAGTTGGC+AGG - chr3_1:28689051-28689070 Msa0355050:intron 55.0%
! TGCTGAGTTGGCAGGGTGTT+AGG - chr3_1:28689059-28689078 Msa0355050:intron 55.0%
! AGTTGGCAGGGTGTTAGGAC+AGG - chr3_1:28689064-28689083 Msa0355050:intron 55.0%
ATAGGCATCCGGACTGAGAG+AGG + chr3_1:28689162-28689181 None:intergenic 55.0%
GGGGCAGATCGCAATAAAGG+TGG + chr3_1:28689438-28689457 None:intergenic 55.0%
!! TGTTGGCTTTGAGAGGGTGG+AGG - chr3_1:28689491-28689510 Msa0355050:intron 55.0%
GCACTCCTCACCTTACAAGC+TGG - chr3_1:28689513-28689532 Msa0355050:intron 55.0%
ACAATGCCGCCGTACATGTG+AGG - chr3_1:28689804-28689823 Msa0355050:intron 55.0%
GAGGCTTCCAAAGATGCAGG+TGG + chr3_1:28689980-28689999 None:intergenic 55.0%
TGCGAGGCTTCCAAAGATGC+AGG + chr3_1:28689983-28690002 None:intergenic 55.0%
CAGCATGATTCTGCAGGTCG+TGG + chr3_1:28690270-28690289 None:intergenic 55.0%
CACGACCTGCAGAATCATGC+TGG - chr3_1:28690268-28690287 Msa0355050:intron 55.0%
GACATCATGCCGGTGGTATG+AGG + chr3_1:28690337-28690356 None:intergenic 55.0%
GATGGCCATGACTGACCTGT+AGG + chr3_1:28690406-28690425 None:intergenic 55.0%
GAACTTGAGCCTCCACAGGA+TGG + chr3_1:28690424-28690443 None:intergenic 55.0%
GGATGAACTTGAGCCTCCAC+AGG + chr3_1:28690428-28690447 None:intergenic 55.0%
CATTGGACATTGTCGGCAGG+AGG + chr3_1:28690936-28690955 None:intergenic 55.0%
CTGCATTGGACATTGTCGGC+AGG + chr3_1:28690939-28690958 None:intergenic 55.0%
GCCGATGGCAGAAACATGGC+AGG + chr3_1:28685761-28685780 None:intergenic 60.0%
TGCGGCCGATGGCAGAAACA+TGG + chr3_1:28685765-28685784 None:intergenic 60.0%
GGACGCACATGTGGAGAAGG+AGG - chr3_1:28686416-28686435 Msa0355050:CDS 60.0%
! CATGTGGAGAAGGAGGCGCA+TGG - chr3_1:28686423-28686442 Msa0355050:CDS 60.0%
! GGTGTCATCGGAGAACAGGG+TGG + chr3_1:28687915-28687934 None:intergenic 60.0%
TGCCGCCGTACATGTGAGGA+TGG - chr3_1:28689808-28689827 Msa0355050:intron 60.0%
GTGGTATGAGGACCGCCTTG+TGG + chr3_1:28690325-28690344 None:intergenic 60.0%
CAAGGCGGTCCTCATACCAC+CGG - chr3_1:28690325-28690344 Msa0355050:intron 60.0%
GGTCAGTCATGGCCATCCTG+TGG - chr3_1:28690409-28690428 Msa0355050:intron 60.0%
CAGTCATGGCCATCCTGTGG+AGG - chr3_1:28690412-28690431 Msa0355050:intron 60.0%
GAAAGACGGCCTCGTGTGAG+AGG - chr3_1:28690565-28690584 Msa0355050:intron 60.0%
! TGTCGGCAGGAGGTACACAG+AGG + chr3_1:28690926-28690945 None:intergenic 60.0%
GGGGTAGGACATCATGCCGG+TGG + chr3_1:28690344-28690363 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 28685027 28691099 28685027 ID=Msa0355050;Name=Msa0355050
chr3_1 mRNA 28685027 28691099 28685027 ID=Msa0355050-mRNA-1;Parent=Msa0355050;Name=Msa0355050-mRNA-1;_AED=0.27;_eAED=0.27;_QI=45|1|1|1|1|1|6|382|580
chr3_1 exon 28685027 28686445 28685027 ID=Msa0355050-mRNA-1:exon:5989;Parent=Msa0355050-mRNA-1
chr3_1 exon 28687269 28687362 28687269 ID=Msa0355050-mRNA-1:exon:5988;Parent=Msa0355050-mRNA-1
chr3_1 exon 28688129 28688296 28688129 ID=Msa0355050-mRNA-1:exon:5987;Parent=Msa0355050-mRNA-1
chr3_1 exon 28689682 28689815 28689682 ID=Msa0355050-mRNA-1:exon:5986;Parent=Msa0355050-mRNA-1
chr3_1 exon 28689923 28690084 28689923 ID=Msa0355050-mRNA-1:exon:5985;Parent=Msa0355050-mRNA-1
chr3_1 exon 28690907 28691099 28690907 ID=Msa0355050-mRNA-1:exon:5984;Parent=Msa0355050-mRNA-1
chr3_1 five_prime_UTR 28691055 28691099 28691055 ID=Msa0355050-mRNA-1:five_prime_utr;Parent=Msa0355050-mRNA-1
chr3_1 CDS 28690907 28691054 28690907 ID=Msa0355050-mRNA-1:cds;Parent=Msa0355050-mRNA-1
chr3_1 CDS 28689923 28690084 28689923 ID=Msa0355050-mRNA-1:cds;Parent=Msa0355050-mRNA-1
chr3_1 CDS 28689682 28689815 28689682 ID=Msa0355050-mRNA-1:cds;Parent=Msa0355050-mRNA-1
chr3_1 CDS 28688129 28688296 28688129 ID=Msa0355050-mRNA-1:cds;Parent=Msa0355050-mRNA-1
chr3_1 CDS 28687269 28687362 28687269 ID=Msa0355050-mRNA-1:cds;Parent=Msa0355050-mRNA-1
chr3_1 CDS 28685409 28686445 28685409 ID=Msa0355050-mRNA-1:cds;Parent=Msa0355050-mRNA-1
chr3_1 three_prime_UTR 28685027 28685408 28685027 ID=Msa0355050-mRNA-1:three_prime_utr;Parent=Msa0355050-mRNA-1
Gene Sequence

>Msa0355050

ATGGAGAGTGAAGGGTTTGATTTGAATAATGGTAAGAAGATTGGTGATGGTTTTGTTGATAGAAGTAAAGTGAGGATTTTGCTTTGTGATACTGATTCCAATACCTCTCAAGAAGTTTTTACACTTCTCTTGAGATGTTGTTATCAAGTTATTTCAGTGAAGTCAGCAAGACAAGTAATTGATGCACTGAATGCAGAGAAGGAAACTATAGATCTCATACTGGCTGAAGTTGGCCTTCCGAAGAAGAAGGGCATGAAGATGTTGAAGTACATAGCCCGAGACAAAGAATTGCGCAGAATTCCTATTATAATGATGTCTGCACAAGATGAGGTGTCTGTTGTTGTGAAGTGCTTGAGGCTCGGAGCAGCAGACTATCTAGTAAAGCCTTTACGCACAAATGAACTCTTAAATTTGTGGACGCACATGTGGAGAAGGAGGCGCATGCTTGGACTTGCAGAGAAGAACATGTTAAATTACGACTTTGATCTGGTAGTATCAGAGCCTAGCGATAACAATACAAACAGTACCACCCTGTTCTCCGATGACACCGATGATAACTCGAAGAGAAGCACTATTCAAGAGACAGGAATATCAGTCCAACAAGAGCAAGAGTCTACTATTGCAAATGCTGATGCTGTTGAGGAACCTCCAGATGATCATGCATCAGAATGTCAGCCTGAAGTCCATGGAGTAAATGATCAGCCAGCTTCCTTTTCATTTGCTCCAAAGAAGAGCGAACTAAGGATTGGGGTTGGGGAGTCATCAGCTTTCTTCACATATGTTAAAGCATCAATGCTAAAAAGAAACCTTGAAGGGATTGTTCATGCTGACAATGCCGCCGTACATGTGAGGATGGAAGTTTTGAATGAAGCATGTGCTCAACAAGGGGTTAGTGATCTCGAAGTATGCAAAAATGGAGAAACTTGCGATAGTCAATCGCAAGATGACTTCCCCAGCAGCAATAGTATACATGGTTCTTTATCTATTGAGAGATCTTGTACTCCACCTGCATCTTTGGAAGCCTCGCAGCAAAACCGTTACGAAGAAGAAAATTTGCATCACAACAGTCTGATACATCCAAGAAATGGGACCTATTGTTCTGAGCTCGAAATGTCTAACATGCCTGCACAAAATTTGCATCACAACAGTCTGATGCATCCAAGAAATGGGGTTCATTGTCCTGAGCTTGAAAGATCTAACATGACTGCACAACATGCTTATCCATATTATATGTCATCGGGAGTTAATCATGTTATGATGCCTTCATCGGCGCAAATGTATCAAAAGAATGTCCACGACCTGCAGAATCATGCTGGTACATCTATGATTGCTCACTACAATCATGTTCCACAAGGCGGTCCTCATACCACCGGCATGATGTCCTACCCCTATTACCCAATGAATATGTGCTTACAACCAGGTCAGATTCCTACAGGTCAGTCATGGCCATCCTGTGGAGGCTCAAGTTCATCCGAAGCAAAATTAAGTAAAGTTGACAGGAGAGAAGCAGCATTGATTAAATTCAGACAGAAAAAGAAAGAGCGCTGTTTTGATAAGAAAATTAGGTATGTCAATCGGAAACAACTTGCTGAAAGACGGCCTCGTGTGAGAGGACAGTTTGTCAGTAAGTTGAATGGTGTTGATGTGGATCTTAATGGACAGCCTCCTTCGATAGAATATGATGAAAATGAAGATGATCAGGGGAGCTGGAGATTACTCTCCCAATGTCGTCGAAATGACTAA
Protein sequence

>Msa0355050

MESEGFDLNNGKKIGDGFVDRSKVRILLCDTDSNTSQEVFTLLLRCCYQVISVKSARQVIDALNAEKETIDLILAEVGLPKKKGMKMLKYIARDKELRRIPIIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLAEKNMLNYDFDLVVSEPSDNNTNSTTLFSDDTDDNSKRSTIQETGISVQQEQESTIANADAVEEPPDDHASECQPEVHGVNDQPASFSFAPKKSELRIGVGESSAFFTYVKASMLKRNLEGIVHADNAAVHVRMEVLNEACAQQGVSDLEVCKNGETCDSQSQDDFPSSNSIHGSLSIERSCTPPASLEASQQNRYEEENLHHNSLIHPRNGTYCSELEMSNMPAQNLHHNSLMHPRNGVHCPELERSNMTAQHAYPYYMSSGVNHVMMPSSAQMYQKNVHDLQNHAGTSMIAHYNHVPQGGPHTTGMMSYPYYPMNMCLQPGQIPTGQSWPSCGGSSSSEAKLSKVDRREAALIKFRQKKKERCFDKKIRYVNRKQLAERRPRVRGQFVSKLNGVDVDLNGQPPSIEYDENEDDQGSWRLLSQCRRND*