Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0355050 | XP_013459414.1 | 92.308 | 572 | 36 | 4 | 1 | 569 | 1 | 567 | 0.0 | 1078 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0355050 | sp|Q9LKL2|APRR1_ARATH | 48.371 | 614 | 240 | 15 | 6 | 562 | 1 | 594 | 9.21e-169 | 496 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0355050 | A0A072V5J5 | 92.308 | 572 | 36 | 4 | 1 | 569 | 1 | 567 | 0.0 | 1078 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0355050 | Msa0686210 | 0.800294 | 1.542199e-48 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0355050 | MtrunA17_Chr3g0091641 | 92.308 | 572 | 36 | 4 | 1 | 569 | 1 | 567 | 0.0 | 1078 |
Msa0355050 | MtrunA17_Chr4g0061021 | 65.104 | 576 | 146 | 7 | 10 | 560 | 19 | 564 | 0.0 | 730 |
Msa0355050 | MtrunA17_Chr3g0127941 | 30.795 | 302 | 171 | 8 | 18 | 315 | 50 | 317 | 6.32e-31 | 128 |
Msa0355050 | MtrunA17_Chr3g0127941 | 68.889 | 45 | 14 | 0 | 501 | 545 | 630 | 674 | 1.13e-12 | 70.9 |
Msa0355050 | MtrunA17_Chr4g0030271 | 43.750 | 128 | 72 | 0 | 18 | 145 | 83 | 210 | 1.22e-28 | 121 |
Msa0355050 | MtrunA17_Chr4g0030271 | 68.750 | 48 | 15 | 0 | 497 | 544 | 717 | 764 | 3.04e-15 | 79.3 |
Msa0355050 | MtrunA17_Chr8g0345901 | 35.838 | 173 | 94 | 1 | 18 | 190 | 30 | 185 | 1.13e-27 | 117 |
Msa0355050 | MtrunA17_Chr8g0345901 | 63.265 | 49 | 18 | 0 | 500 | 548 | 583 | 631 | 5.84e-12 | 68.6 |
Msa0355050 | MtrunA17_Chr7g0276361 | 42.188 | 128 | 74 | 0 | 18 | 145 | 8 | 135 | 3.78e-27 | 115 |
Msa0355050 | MtrunA17_Chr7g0276361 | 60.000 | 50 | 20 | 0 | 497 | 546 | 537 | 586 | 2.79e-13 | 72.8 |
Msa0355050 | MtrunA17_Chr1g0181811 | 31.556 | 225 | 136 | 3 | 18 | 229 | 79 | 298 | 2.62e-26 | 114 |
Msa0355050 | MtrunA17_Chr1g0181811 | 56.250 | 64 | 25 | 1 | 481 | 541 | 671 | 734 | 1.43e-12 | 70.9 |
Msa0355050 | MtrunA17_Chr1g0161431 | 30.732 | 205 | 126 | 4 | 24 | 228 | 15 | 203 | 1.12e-21 | 99.4 |
Msa0355050 | MtrunA17_Chr3g0091661 | 65.714 | 70 | 20 | 2 | 37 | 106 | 27 | 92 | 2.64e-21 | 89.0 |
Msa0355050 | MtrunA17_Chr2g0294911 | 35.252 | 139 | 85 | 2 | 9 | 147 | 20 | 153 | 3.69e-20 | 94.4 |
Msa0355050 | MtrunA17_Chr3g0123131 | 34.959 | 123 | 77 | 1 | 24 | 146 | 17 | 136 | 6.72e-20 | 93.6 |
Msa0355050 | MtrunA17_Chr3g0137101 | 34.677 | 124 | 78 | 1 | 24 | 147 | 12 | 132 | 3.77e-19 | 91.3 |
Msa0355050 | MtrunA17_Chr4g0067981 | 34.677 | 124 | 78 | 1 | 24 | 147 | 35 | 155 | 5.45e-19 | 90.9 |
Msa0355050 | MtrunA17_Chr2g0304841 | 32.836 | 134 | 85 | 2 | 16 | 147 | 12 | 142 | 1.46e-18 | 89.7 |
Msa0355050 | MtrunA17_Chr3g0134481 | 35.338 | 133 | 81 | 2 | 16 | 146 | 2 | 131 | 1.67e-18 | 84.0 |
Msa0355050 | MtrunA17_Chr8g0376881 | 34.146 | 123 | 78 | 1 | 24 | 146 | 29 | 148 | 3.54e-18 | 87.8 |
Msa0355050 | MtrunA17_Chr1g0149841 | 33.065 | 124 | 80 | 1 | 24 | 147 | 9 | 129 | 5.09e-18 | 87.4 |
Msa0355050 | MtrunA17_Chr4g0074411 | 33.333 | 123 | 79 | 1 | 24 | 146 | 22 | 141 | 9.79e-18 | 86.7 |
Msa0355050 | MtrunA17_Chr7g0275401 | 30.968 | 155 | 100 | 2 | 21 | 171 | 6 | 157 | 1.04e-17 | 84.0 |
Msa0355050 | MtrunA17_Chr7g0275891 | 31.646 | 158 | 100 | 3 | 24 | 176 | 9 | 163 | 1.74e-17 | 84.3 |
Msa0355050 | MtrunA17_Chr4g0074401 | 32.520 | 123 | 80 | 1 | 24 | 146 | 21 | 140 | 2.52e-17 | 85.5 |
Msa0355050 | MtrunA17_Chr1g0149851 | 33.065 | 124 | 80 | 1 | 24 | 147 | 9 | 129 | 2.56e-17 | 85.5 |
Msa0355050 | MtrunA17_Chr3g0134461 | 32.258 | 124 | 82 | 1 | 24 | 147 | 12 | 133 | 1.84e-12 | 66.6 |
Msa0355050 | MtrunA17_Chr4g0049741 | 63.830 | 47 | 17 | 0 | 496 | 542 | 103 | 149 | 3.51e-12 | 68.2 |
Msa0355050 | MtrunA17_Chr3g0132751 | 47.297 | 74 | 31 | 2 | 472 | 541 | 102 | 171 | 1.23e-11 | 66.6 |
Msa0355050 | MtrunA17_Chr4g0074421 | 36.364 | 77 | 46 | 1 | 70 | 146 | 2 | 75 | 1.80e-11 | 63.5 |
Msa0355050 | MtrunA17_Chr5g0400241 | 29.134 | 127 | 84 | 3 | 17 | 142 | 10 | 131 | 3.53e-11 | 65.9 |
Msa0355050 | MtrunA17_Chr7g0256551 | 26.174 | 149 | 90 | 3 | 17 | 146 | 2 | 149 | 4.44e-11 | 63.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0355050 | AT5G61380.1 | 48.371 | 614 | 240 | 15 | 6 | 562 | 1 | 594 | 9.36e-170 | 496 |
Msa0355050 | AT2G46790.3 | 42.188 | 128 | 74 | 0 | 18 | 145 | 31 | 158 | 1.08e-31 | 128 |
Msa0355050 | AT2G46790.1 | 41.538 | 130 | 76 | 0 | 16 | 145 | 29 | 158 | 1.53e-31 | 128 |
Msa0355050 | AT2G46790.1 | 69.565 | 46 | 14 | 0 | 500 | 545 | 416 | 461 | 2.83e-14 | 75.9 |
Msa0355050 | AT5G24470.1 | 45.113 | 133 | 73 | 0 | 18 | 150 | 44 | 176 | 4.91e-31 | 127 |
Msa0355050 | AT5G24470.1 | 55.172 | 58 | 26 | 0 | 487 | 544 | 495 | 552 | 4.22e-13 | 72.4 |
Msa0355050 | AT5G60100.7 | 45.082 | 122 | 67 | 0 | 24 | 145 | 64 | 185 | 3.03e-28 | 117 |
Msa0355050 | AT5G60100.6 | 45.082 | 122 | 67 | 0 | 24 | 145 | 64 | 185 | 3.03e-28 | 117 |
Msa0355050 | AT5G60100.4 | 45.082 | 122 | 67 | 0 | 24 | 145 | 64 | 185 | 3.03e-28 | 117 |
Msa0355050 | AT5G60100.5 | 45.082 | 122 | 67 | 0 | 24 | 145 | 64 | 185 | 6.05e-28 | 117 |
Msa0355050 | AT5G60100.5 | 60.000 | 65 | 19 | 2 | 486 | 543 | 420 | 484 | 2.84e-13 | 72.8 |
Msa0355050 | AT5G60100.3 | 45.082 | 122 | 67 | 0 | 24 | 145 | 64 | 185 | 6.05e-28 | 117 |
Msa0355050 | AT5G60100.3 | 60.000 | 65 | 19 | 2 | 486 | 543 | 420 | 484 | 2.84e-13 | 72.8 |
Msa0355050 | AT5G60100.1 | 45.082 | 122 | 67 | 0 | 24 | 145 | 64 | 185 | 6.05e-28 | 117 |
Msa0355050 | AT5G60100.1 | 60.000 | 65 | 19 | 2 | 486 | 543 | 420 | 484 | 2.84e-13 | 72.8 |
Msa0355050 | AT5G60100.2 | 45.082 | 122 | 67 | 0 | 24 | 145 | 64 | 185 | 1.81e-27 | 116 |
Msa0355050 | AT5G60100.2 | 60.000 | 65 | 19 | 2 | 486 | 543 | 447 | 511 | 3.21e-13 | 72.8 |
Msa0355050 | AT5G02810.1 | 41.406 | 128 | 75 | 0 | 18 | 145 | 72 | 199 | 7.46e-25 | 109 |
Msa0355050 | AT5G02810.1 | 70.588 | 51 | 15 | 0 | 493 | 543 | 661 | 711 | 1.71e-15 | 80.5 |
Msa0355050 | AT3G16857.2 | 35.714 | 126 | 78 | 1 | 22 | 147 | 35 | 157 | 4.47e-20 | 94.7 |
Msa0355050 | AT3G16857.1 | 35.714 | 126 | 78 | 1 | 22 | 147 | 35 | 157 | 5.57e-20 | 94.4 |
Msa0355050 | AT4G31920.1 | 35.537 | 121 | 75 | 1 | 24 | 144 | 17 | 134 | 5.84e-19 | 90.9 |
Msa0355050 | AT2G25180.1 | 34.146 | 123 | 78 | 1 | 24 | 146 | 17 | 136 | 2.04e-18 | 89.4 |
Msa0355050 | AT1G67710.1 | 33.333 | 123 | 79 | 1 | 24 | 146 | 11 | 130 | 6.94e-18 | 87.4 |
Msa0355050 | AT2G01760.1 | 34.400 | 125 | 80 | 1 | 22 | 146 | 9 | 131 | 2.27e-16 | 81.6 |
Msa0355050 | AT5G02810.2 | 70.588 | 51 | 15 | 0 | 493 | 543 | 517 | 567 | 1.07e-15 | 80.9 |
Msa0355050 | AT2G46670.1 | 71.111 | 45 | 13 | 0 | 501 | 545 | 132 | 176 | 1.66e-15 | 75.5 |
Msa0355050 | AT3G16857.3 | 39.326 | 89 | 51 | 1 | 59 | 147 | 2 | 87 | 4.62e-15 | 79.0 |
Msa0355050 | AT2G46790.5 | 69.565 | 46 | 14 | 0 | 500 | 545 | 259 | 304 | 7.90e-15 | 76.3 |
Msa0355050 | AT2G46790.4 | 69.565 | 46 | 14 | 0 | 500 | 545 | 259 | 304 | 7.90e-15 | 76.3 |
Msa0355050 | AT2G46790.2 | 69.565 | 46 | 14 | 0 | 500 | 545 | 299 | 344 | 1.79e-14 | 75.5 |
Msa0355050 | AT2G46790.2 | 63.415 | 41 | 15 | 0 | 105 | 145 | 1 | 41 | 1.47e-12 | 69.7 |
Msa0355050 | AT3G62670.1 | 31.008 | 129 | 83 | 3 | 18 | 146 | 36 | 158 | 3.23e-14 | 75.5 |
Msa0355050 | AT5G58080.1 | 34.091 | 132 | 81 | 3 | 16 | 145 | 8 | 135 | 4.71e-13 | 72.4 |
Msa0355050 | AT2G01760.2 | 31.818 | 110 | 73 | 1 | 37 | 146 | 52 | 159 | 1.42e-12 | 70.1 |
Msa0355050 | AT1G49190.2 | 27.419 | 124 | 87 | 1 | 26 | 149 | 36 | 156 | 2.22e-11 | 67.0 |
Msa0355050 | AT1G49190.1 | 27.419 | 124 | 87 | 1 | 26 | 149 | 36 | 156 | 2.38e-11 | 66.2 |
Find 147 sgRNAs with CRISPR-Local
Find 425 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AACTGTTGCCTCGCATTAAT+TGG | 0.221271 | 3_1:-28685324 | Msa0355050:three_prime_UTR |
CCGTCTGGCTTTGAGATCTT+TGG | 0.222731 | 3_1:-28685212 | Msa0355050:three_prime_UTR |
CACATATTCATTGGGTAATA+GGG | 0.232593 | 3_1:+28685743 | None:intergenic |
CCCTCACCTCTTGCTCTTGT+TGG | 0.248511 | 3_1:+28688122 | None:intergenic |
GCACATATTCATTGGGTAAT+AGG | 0.254453 | 3_1:+28685742 | None:intergenic |
ATCCTTAGTTCGCTCTTCTT+TGG | 0.263156 | 3_1:+28686406 | None:intergenic |
GAACAATAGGTCCCATTTCT+TGG | 0.266361 | 3_1:+28686052 | None:intergenic |
GAAGGGTTTGATTTGAATAA+TGG | 0.275973 | 3_1:-28691023 | Msa0355050:CDS |
GGACAATGAACCCCATTTCT+TGG | 0.284413 | 3_1:+28685971 | None:intergenic |
TTGTACTCCACCTGCATCTT+TGG | 0.287125 | 3_1:-28686134 | Msa0355050:CDS |
ACTCCCGATGACATATAATA+TGG | 0.329177 | 3_1:+28685908 | None:intergenic |
TCATTTACTCCATGGACTTC+AGG | 0.346080 | 3_1:+28687277 | None:intergenic |
CATTTGAGGAAGCAGTATTA+AGG | 0.347718 | 3_1:+28685237 | None:intergenic |
GGTTGTAAGCACATATTCAT+TGG | 0.352891 | 3_1:+28685734 | None:intergenic |
AACTAAATCTTACTTATAAT+AGG | 0.364003 | 3_1:+28689910 | None:intergenic |
CATCGGTGTCATCGGAGAAC+AGG | 0.370393 | 3_1:+28688188 | None:intergenic |
GCGAACTAAGGATTGGGGTT+GGG | 0.374057 | 3_1:-28686396 | Msa0355050:CDS |
CGAACTAAGGATTGGGGTTG+GGG | 0.375308 | 3_1:-28686395 | Msa0355050:CDS |
TTCTGCGCAATTCTTTGTCT+CGG | 0.375322 | 3_1:+28689935 | None:intergenic |
CATTCTGATGCATGATCATC+TGG | 0.375477 | 3_1:+28687304 | None:intergenic |
GTCTCTATTCCTTGCTTCAA+TGG | 0.379658 | 3_1:-28685349 | Msa0355050:three_prime_UTR |
AGTCTGATACATCCAAGAAA+TGG | 0.380357 | 3_1:-28686064 | Msa0355050:CDS |
TGATGAAAATGAAGATGATC+AGG | 0.381925 | 3_1:-28685450 | Msa0355050:CDS |
CAGCATGAACAATCCCTTCA+AGG | 0.386500 | 3_1:+28686323 | None:intergenic |
AGTCTGATGCATCCAAGAAA+TGG | 0.387353 | 3_1:-28685983 | Msa0355050:CDS |
CAAATGAACTCTTAAATTTG+TGG | 0.387669 | 3_1:-28689709 | Msa0355050:CDS |
CTCTTGAGATGTTGTTATCA+AGG | 0.389075 | 3_1:-28690906 | Msa0355050:intron |
GGTGTTGATGTGGATCTTAA+TGG | 0.393805 | 3_1:-28685494 | Msa0355050:CDS |
GTCTGATGCATCCAAGAAAT+GGG | 0.394772 | 3_1:-28685982 | Msa0355050:CDS |
TGGCCATCACTTGCTATATG+AGG | 0.397845 | 3_1:-28685304 | Msa0355050:three_prime_UTR |
CATTTCGAGCTCAGAACAAT+AGG | 0.399948 | 3_1:+28686039 | None:intergenic |
ATCTTCATGCCCTTCTTCTT+CGG | 0.403681 | 3_1:+28689973 | None:intergenic |
TTGAATAATGGTAAGAAGAT+TGG | 0.425156 | 3_1:-28691011 | Msa0355050:CDS |
TGCCCCAGCTATAATTGATA+AGG | 0.426740 | 3_1:+28685263 | None:intergenic |
TTAGTCATTTCGACGACATT+GGG | 0.436055 | 3_1:+28685409 | None:intergenic |
AGAAGAGCGAACTAAGGATT+GGG | 0.437707 | 3_1:-28686402 | Msa0355050:CDS |
ACCATGTATACTATTGCTGC+TGG | 0.439872 | 3_1:+28686177 | None:intergenic |
GATCCTTGACAGGATAATAT+AGG | 0.441642 | 3_1:+28685373 | None:intergenic |
ATGAAGATGATCAGGGGAGC+TGG | 0.451510 | 3_1:-28685442 | Msa0355050:CDS |
ATGTTAGATCTTTCAAGCTC+AGG | 0.456754 | 3_1:+28685950 | None:intergenic |
ACACCCTTATCAATTATAGC+TGG | 0.457558 | 3_1:-28685267 | Msa0355050:three_prime_UTR |
TATGAAACTTTCAACTGCAT+TGG | 0.458849 | 3_1:+28685154 | None:intergenic |
GTTGTAAGCACATATTCATT+GGG | 0.463517 | 3_1:+28685735 | None:intergenic |
TCTGCGCAATTCTTTGTCTC+GGG | 0.465345 | 3_1:+28689936 | None:intergenic |
GTCTGATACATCCAAGAAAT+GGG | 0.466748 | 3_1:-28686063 | Msa0355050:CDS |
AAGAGTTCATTTGTGCGTAA+AGG | 0.468426 | 3_1:+28689719 | None:intergenic |
CTTAGTCATTTCGACGACAT+TGG | 0.471322 | 3_1:+28685408 | None:intergenic |
CCCAGCAGCAATAGTATACA+TGG | 0.474499 | 3_1:-28686178 | Msa0355050:CDS |
AGAAGCACTATTCAAGAGAC+AGG | 0.475811 | 3_1:-28688154 | Msa0355050:CDS |
TGATACATTTGCGCCGATGA+AGG | 0.476546 | 3_1:+28685869 | None:intergenic |
GCCCCAGCTATAATTGATAA+GGG | 0.477003 | 3_1:+28685264 | None:intergenic |
CTTCTTTGGAGCAAATGAAA+AGG | 0.478124 | 3_1:+28686420 | None:intergenic |
TATCCATATTATATGTCATC+GGG | 0.479913 | 3_1:-28685911 | Msa0355050:CDS |
CAATGTCGTCGAAATGACTA+AGG | 0.481430 | 3_1:-28685407 | Msa0355050:exon |
CTCCAAAGAAGAGCGAACTA+AGG | 0.481928 | 3_1:-28686408 | Msa0355050:CDS |
AAGAAGAGCGAACTAAGGAT+TGG | 0.487567 | 3_1:-28686403 | Msa0355050:CDS |
CAAAATTAAGTAAAGTTGAC+AGG | 0.496846 | 3_1:-28685652 | Msa0355050:CDS |
GTTAAATTACGACTTTGATC+TGG | 0.497463 | 3_1:-28688251 | Msa0355050:CDS |
CACCCTTATCAATTATAGCT+GGG | 0.498049 | 3_1:-28685266 | Msa0355050:three_prime_UTR |
TCATGCCCTTCTTCTTCGGA+AGG | 0.501684 | 3_1:+28689977 | None:intergenic |
TCAACTGCATTGGACATTGT+CGG | 0.507869 | 3_1:+28685164 | None:intergenic |
CTGTTTGTATTGTTATCGCT+AGG | 0.509038 | 3_1:+28688217 | None:intergenic |
CGAGTTATCATCGGTGTCAT+CGG | 0.511992 | 3_1:+28688180 | None:intergenic |
CTGTTGTTGTGAAGTGCTTG+AGG | 0.513289 | 3_1:-28689769 | Msa0355050:CDS |
CAGTTTGTCAGTAAGTTGAA+TGG | 0.517062 | 3_1:-28685515 | Msa0355050:CDS |
TCATGTTATGATGCCTTCAT+CGG | 0.517737 | 3_1:-28685882 | Msa0355050:CDS |
AGTTGGCCTTCCGAAGAAGA+AGG | 0.517951 | 3_1:-28689983 | Msa0355050:CDS |
AAAGCCAGACGGATCATTTG+AGG | 0.518079 | 3_1:+28685223 | None:intergenic |
AGAAAATTAGGTATGTCAAT+CGG | 0.521151 | 3_1:-28685574 | Msa0355050:CDS |
CAGCATGATTCTGCAGGTCG+TGG | 0.521808 | 3_1:+28685837 | None:intergenic |
CAACCAGGTCAGATTCCTAC+AGG | 0.526809 | 3_1:-28685716 | Msa0355050:CDS |
GGAAACTATAGATCTCATAC+TGG | 0.527599 | 3_1:-28690010 | Msa0355050:CDS |
GACATCATGCCGGTGGTATG+AGG | 0.531091 | 3_1:+28685770 | None:intergenic |
GCTTCCTCAAATGATCCGTC+TGG | 0.531930 | 3_1:-28685227 | Msa0355050:three_prime_UTR |
GGATGAACTTGAGCCTCCAC+AGG | 0.532673 | 3_1:+28685679 | None:intergenic |
GATGAAAATGAAGATGATCA+GGG | 0.534269 | 3_1:-28685449 | Msa0355050:CDS |
CCATGTATACTATTGCTGCT+GGG | 0.538099 | 3_1:+28686178 | None:intergenic |
AATAGAGACAGATCCTTGAC+AGG | 0.539660 | 3_1:+28685363 | None:intergenic |
AACTTCCATCCTCACATGTA+CGG | 0.540871 | 3_1:+28686291 | None:intergenic |
AGCGAACTAAGGATTGGGGT+TGG | 0.541428 | 3_1:-28686397 | Msa0355050:CDS |
GATCTCATACTGGCTGAAGT+TGG | 0.542729 | 3_1:-28690000 | Msa0355050:CDS |
TGCGAGGCTTCCAAAGATGC+AGG | 0.545928 | 3_1:+28686124 | None:intergenic |
TGCAAATGCTGATGCTGTTG+AGG | 0.546641 | 3_1:-28687332 | Msa0355050:CDS |
ATGAATATGTGCTTACAACC+AGG | 0.553880 | 3_1:-28685731 | Msa0355050:CDS |
GCTTCTCTTCGAGTTATCAT+CGG | 0.556252 | 3_1:+28688171 | None:intergenic |
GAATGTCAGCCTGAAGTCCA+TGG | 0.557310 | 3_1:-28687286 | Msa0355050:CDS |
TGTGGACGCACATGTGGAGA+AGG | 0.558944 | 3_1:-28689691 | Msa0355050:CDS |
GTTGTGAAGTGCTTGAGGCT+CGG | 0.559666 | 3_1:-28689764 | Msa0355050:CDS |
ATGTACCAGCATGATTCTGC+AGG | 0.560138 | 3_1:+28685831 | None:intergenic |
CACGACCTGCAGAATCATGC+TGG | 0.560739 | 3_1:-28685836 | Msa0355050:CDS |
CTGCATTGGACATTGTCGGC+AGG | 0.561100 | 3_1:+28685168 | None:intergenic |
TGATGCACTGAATGCAGAGA+AGG | 0.561148 | 3_1:-28690031 | Msa0355050:CDS |
AGGATAATATAGGAACAGAT+TGG | 0.561875 | 3_1:+28685383 | None:intergenic |
ATCAGTCCAACAAGAGCAAG+AGG | 0.563155 | 3_1:-28688128 | Msa0355050:intron |
CTGGCTGATCATTTACTCCA+TGG | 0.563740 | 3_1:+28687269 | None:intergenic |
TAAATTTGTGGACGCACATG+TGG | 0.565713 | 3_1:-28689697 | Msa0355050:CDS |
TCTATTGAACTGATAAAAGC+AGG | 0.566168 | 3_1:-28685119 | Msa0355050:three_prime_UTR |
TTATCCATATTATATGTCAT+CGG | 0.573399 | 3_1:-28685912 | Msa0355050:CDS |
CAGTCATGGCCATCCTGTGG+AGG | 0.575525 | 3_1:-28685692 | Msa0355050:CDS |
GAAAGACGGCCTCGTGTGAG+AGG | 0.576002 | 3_1:-28685539 | Msa0355050:CDS |
AATGGTAAGAAGATTGGTGA+TGG | 0.578357 | 3_1:-28691005 | Msa0355050:CDS |
ATTCATTGGGTAATAGGGGT+AGG | 0.578636 | 3_1:+28685748 | None:intergenic |
GTTCCTATATTATCCTGTCA+AGG | 0.579035 | 3_1:-28685376 | Msa0355050:three_prime_UTR |
CATGTATACTATTGCTGCTG+GGG | 0.579143 | 3_1:+28686179 | None:intergenic |
ATCGGTGTCATCGGAGAACA+GGG | 0.581062 | 3_1:+28688189 | None:intergenic |
AGTTCAATAGAGCATAAGAA+TGG | 0.582562 | 3_1:+28685131 | None:intergenic |
TCATCATATTCTATCGAAGG+AGG | 0.583455 | 3_1:+28685467 | None:intergenic |
GGAAACAACTTGCTGAAAGA+CGG | 0.584344 | 3_1:-28685553 | Msa0355050:CDS |
AATGAAGCATGTGCTCAACA+AGG | 0.588403 | 3_1:-28686265 | Msa0355050:CDS |
TGCCGCCGTACATGTGAGGA+TGG | 0.593042 | 3_1:-28686296 | Msa0355050:CDS |
GTTGGCCTTCCGAAGAAGAA+GGG | 0.599234 | 3_1:-28689982 | Msa0355050:CDS |
ACATATTCATTGGGTAATAG+GGG | 0.603859 | 3_1:+28685744 | None:intergenic |
CAAGGCGGTCCTCATACCAC+CGG | 0.610673 | 3_1:-28685779 | Msa0355050:CDS |
ATGAAGCATGTGCTCAACAA+GGG | 0.610896 | 3_1:-28686264 | Msa0355050:CDS |
AGATTCCTACAGGTCAGTCA+TGG | 0.611131 | 3_1:-28685706 | Msa0355050:CDS |
GGTCAGTCATGGCCATCCTG+TGG | 0.616555 | 3_1:-28685695 | Msa0355050:CDS |
TAAGTTGAATGGTGTTGATG+TGG | 0.619859 | 3_1:-28685504 | Msa0355050:CDS |
TTGTTGATAGAAGTAAAGTG+AGG | 0.622065 | 3_1:-28690980 | Msa0355050:CDS |
ACCCTTATCAATTATAGCTG+GGG | 0.622759 | 3_1:-28685265 | Msa0355050:three_prime_UTR |
CATGGAGTAAATGATCAGCC+AGG | 0.623977 | 3_1:-28687268 | Msa0355050:intron |
GATGGCCATGACTGACCTGT+AGG | 0.625026 | 3_1:+28685701 | None:intergenic |
CACTACAATCATGTTCCACA+AGG | 0.630620 | 3_1:-28685797 | Msa0355050:CDS |
GGACGCACATGTGGAGAAGG+AGG | 0.632559 | 3_1:-28689688 | Msa0355050:CDS |
GAACTTGAGCCTCCACAGGA+TGG | 0.633875 | 3_1:+28685683 | None:intergenic |
AAGCCTCATATAGCAAGTGA+TGG | 0.635756 | 3_1:+28685301 | None:intergenic |
CCAAAGATCTCAAAGCCAGA+CGG | 0.637509 | 3_1:+28685212 | None:intergenic |
GTGGTATGAGGACCGCCTTG+TGG | 0.643073 | 3_1:+28685782 | None:intergenic |
CATTGGACATTGTCGGCAGG+AGG | 0.643206 | 3_1:+28685171 | None:intergenic |
CATGTGGAGAAGGAGGCGCA+TGG | 0.648174 | 3_1:-28689681 | Msa0355050:intron |
AGTGATGTCTGCACAAGATG+AGG | 0.655473 | 3_1:-28689795 | Msa0355050:CDS |
AATGTCGTCGAAATGACTAA+GGG | 0.656354 | 3_1:-28685406 | Msa0355050:exon |
ATGAAAATGAAGATGATCAG+GGG | 0.656574 | 3_1:-28685448 | Msa0355050:CDS |
TGAAGCATGTGCTCAACAAG+GGG | 0.671878 | 3_1:-28686263 | Msa0355050:CDS |
ATAGGGGTAGGACATCATGC+CGG | 0.674173 | 3_1:+28685760 | None:intergenic |
GGGGTAGGACATCATGCCGG+TGG | 0.676030 | 3_1:+28685763 | None:intergenic |
TACAATCATGTTCCACAAGG+CGG | 0.678482 | 3_1:-28685794 | Msa0355050:CDS |
ACAAACTGTCCTCTCACACG+AGG | 0.687418 | 3_1:+28685530 | None:intergenic |
TCTGATGCATCCAAGAAATG+GGG | 0.690638 | 3_1:-28685981 | Msa0355050:CDS |
AGTGATGGCCAATTAATGCG+AGG | 0.691472 | 3_1:+28685316 | None:intergenic |
TCTGATGCATGATCATCTGG+AGG | 0.693536 | 3_1:+28687307 | None:intergenic |
GAGGCTTCCAAAGATGCAGG+TGG | 0.696339 | 3_1:+28686127 | None:intergenic |
TTCCATCCTCACATGTACGG+CGG | 0.698894 | 3_1:+28686294 | None:intergenic |
GAAGAGCGAACTAAGGATTG+GGG | 0.699832 | 3_1:-28686401 | Msa0355050:CDS |
TGACCTGTAGGAATCTGACC+TGG | 0.703449 | 3_1:+28685713 | None:intergenic |
ACAATGCCGCCGTACATGTG+AGG | 0.726842 | 3_1:-28686300 | Msa0355050:CDS |
GGTGTCATCGGAGAACAGGG+TGG | 0.764734 | 3_1:+28688192 | None:intergenic |
TGTCGGCAGGAGGTACACAG+AGG | 0.781625 | 3_1:+28685181 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTATTTTTATTTTTTTGGTA+TGG | - | chr3_1:28685053-28685072 | Msa0355050:three_prime_UTR | 10.0% |
!!! | TTGTTTTAAAAAAATTGTAT+TGG | + | chr3_1:28686773-28686792 | None:intergenic | 10.0% |
!!! | AAACAAATAATGATTTATTT+TGG | - | chr3_1:28689254-28689273 | Msa0355050:intron | 10.0% |
!!! | GAGGTTTATTTTTATTTTTT+TGG | - | chr3_1:28685048-28685067 | Msa0355050:three_prime_UTR | 15.0% |
!!! | TTTTTCTATGAATTAAAAAC+TGG | - | chr3_1:28685900-28685919 | Msa0355050:CDS | 15.0% |
!! | AACTAAATCTTACTTATAAT+AGG | + | chr3_1:28686197-28686216 | None:intergenic | 15.0% |
!! | GGCAATATTAAATTATTAAA+TGG | - | chr3_1:28686544-28686563 | Msa0355050:intron | 15.0% |
!! | TTCTAAATTTGTAAATACAA+TGG | + | chr3_1:28686635-28686654 | None:intergenic | 15.0% |
!! | AAAAAATTGTATTGGAAATA+GGG | + | chr3_1:28686765-28686784 | None:intergenic | 15.0% |
!! | AAAAAAATTGTATTGGAAAT+AGG | + | chr3_1:28686766-28686785 | None:intergenic | 15.0% |
!! | TTTCAAATTAATTCAAACTA+AGG | + | chr3_1:28686886-28686905 | None:intergenic | 15.0% |
!!! | TTAGTTTGAATTAATTTGAA+AGG | - | chr3_1:28686885-28686904 | Msa0355050:intron | 15.0% |
!! | TTATAATATTCTAACATGTA+TGG | - | chr3_1:28686979-28686998 | Msa0355050:intron | 15.0% |
!! | TATAATATTCTAACATGTAT+GGG | - | chr3_1:28686980-28686999 | Msa0355050:intron | 15.0% |
!! | CTATGATTTGATATAAAATA+TGG | + | chr3_1:28687223-28687242 | None:intergenic | 15.0% |
!!! | TATTTTATATCAAATCATAG+AGG | - | chr3_1:28687223-28687242 | Msa0355050:intron | 15.0% |
!!! | TCATTATTTGTTTAGTTTTA+TGG | + | chr3_1:28689247-28689266 | None:intergenic | 15.0% |
!! | AAAAAATCTGTTGAAAATTT+GGG | + | chr3_1:28689560-28689579 | None:intergenic | 15.0% |
!! | TAAAAAATCTGTTGAAAATT+TGG | + | chr3_1:28689561-28689580 | None:intergenic | 15.0% |
!!! | AAATTTTCAACAGATTTTTT+AGG | - | chr3_1:28689560-28689579 | Msa0355050:intron | 15.0% |
!!! | TTTGTATTTTTAGTAAAGAG+AGG | - | chr3_1:28685029-28685048 | Msa0355050:three_prime_UTR | 20.0% |
!!! | TATTGATTTTGTTATTCCTA+AGG | - | chr3_1:28685929-28685948 | Msa0355050:CDS | 20.0% |
!!! | ATTGATTTTGTTATTCCTAA+GGG | - | chr3_1:28685930-28685949 | Msa0355050:CDS | 20.0% |
!! | AAATTATTAAATGGATGTAG+AGG | - | chr3_1:28686553-28686572 | Msa0355050:intron | 20.0% |
!! | GTGATAACAAAAAATGAAAA+TGG | + | chr3_1:28686675-28686694 | None:intergenic | 20.0% |
!! | AAAACATAATGATAACTATC+TGG | + | chr3_1:28687141-28687160 | None:intergenic | 20.0% |
!! | GTATTAAGAAAAGTAGTTAA+TGG | - | chr3_1:28687298-28687317 | Msa0355050:CDS | 20.0% |
!! | TATGAGGTCAATAATTATAA+GGG | + | chr3_1:28687372-28687391 | None:intergenic | 20.0% |
!!! | AGATTTTCATATGAACTTAT+GGG | - | chr3_1:28687636-28687655 | Msa0355050:intron | 20.0% |
!! | ATCAACCATACAATATAATA+TGG | - | chr3_1:28687660-28687679 | Msa0355050:intron | 20.0% |
!! | ACTTTCCATATTATATTGTA+TGG | + | chr3_1:28687668-28687687 | None:intergenic | 20.0% |
!! | ATATAATATGGAAAGTAGAA+TGG | - | chr3_1:28687672-28687691 | Msa0355050:intron | 20.0% |
!!! | AATAGCTTTTATATTTTTGC+TGG | - | chr3_1:28687804-28687823 | Msa0355050:intron | 20.0% |
!!! | CATAGATTAATCAATTTTCA+AGG | + | chr3_1:28688065-28688084 | None:intergenic | 20.0% |
!! | AGTGTAATTTAAGAAATCTT+CGG | + | chr3_1:28688090-28688109 | None:intergenic | 20.0% |
!! | AGATTTCTTAAATTACACTT+TGG | - | chr3_1:28688091-28688110 | Msa0355050:intron | 20.0% |
!! | TATTGCATTTACAATGAAAA+GGG | + | chr3_1:28688191-28688210 | None:intergenic | 20.0% |
!! | ATATTGCATTTACAATGAAA+AGG | + | chr3_1:28688192-28688211 | None:intergenic | 20.0% |
!!! | TATGATAAATTGTTGATTAC+TGG | - | chr3_1:28688263-28688282 | Msa0355050:CDS | 20.0% |
!!! | TATGTATGTTCCTTTAAAAA+TGG | + | chr3_1:28688303-28688322 | None:intergenic | 20.0% |
!!! | GCAGCTTAAAATTTATTTTA+GGG | + | chr3_1:28688356-28688375 | None:intergenic | 20.0% |
!!! | TGCAGCTTAAAATTTATTTT+AGG | + | chr3_1:28688357-28688376 | None:intergenic | 20.0% |
!! | ACATTAATACAAAAACAAAG+AGG | - | chr3_1:28688470-28688489 | Msa0355050:intron | 20.0% |
!!! | CATATAGCTTTAATATCATT+AGG | + | chr3_1:28688661-28688680 | None:intergenic | 20.0% |
!! | AAAAATCTGTTGAAAATTTG+GGG | + | chr3_1:28689559-28689578 | None:intergenic | 20.0% |
!! | AGAGAGAAAACAATTAAAAA+TGG | + | chr3_1:28689634-28689653 | None:intergenic | 20.0% |
!! | TTATCCATATTATATGTCAT+CGG | - | chr3_1:28690192-28690211 | Msa0355050:intron | 20.0% |
!!! | AACTTTACTTAATTTTGCTT+CGG | + | chr3_1:28690449-28690468 | None:intergenic | 20.0% |
!! | TAACAAAAAATATGAAAGCA+CGG | + | chr3_1:28691011-28691030 | None:intergenic | 20.0% |
!!! | TTAAACATGGAATTTTTGAA+AGG | + | chr3_1:28691070-28691089 | None:intergenic | 20.0% |
! | TTGAATAATGGTAAGAAGAT+TGG | - | chr3_1:28685093-28685112 | Msa0355050:three_prime_UTR | 25.0% |
! | CCATTCATAATCAACAAATT+AGG | + | chr3_1:28685280-28685299 | None:intergenic | 25.0% |
!!! | CCTAATTTGTTGATTATGAA+TGG | - | chr3_1:28685277-28685296 | Msa0355050:three_prime_UTR | 25.0% |
! | AATCAAATTATCCTAGAGAA+CGG | + | chr3_1:28685528-28685547 | None:intergenic | 25.0% |
!!! | TTTATTGTTTTTCACCTTTG+AGG | - | chr3_1:28685571-28685590 | Msa0355050:CDS | 25.0% |
! | TGTCTAGATATATAAACAGT+CGG | - | chr3_1:28685619-28685638 | Msa0355050:CDS | 25.0% |
!! | ATATTGATTAATTTCCACCA+TGG | - | chr3_1:28685681-28685700 | Msa0355050:CDS | 25.0% |
! | AAAAATCCGTCATATAAACA+TGG | + | chr3_1:28685791-28685810 | None:intergenic | 25.0% |
!!! | ATGTTTATATGACGGATTTT+TGG | - | chr3_1:28685790-28685809 | Msa0355050:CDS | 25.0% |
! | AATATCAGAGTATGAACATA+CGG | - | chr3_1:28685871-28685890 | Msa0355050:CDS | 25.0% |
!!! | TTGATTTTGTTATTCCTAAG+GGG | - | chr3_1:28685931-28685950 | Msa0355050:CDS | 25.0% |
!! | CTTTAACTCGAGAATTTTAT+TGG | + | chr3_1:28686240-28686259 | None:intergenic | 25.0% |
! | AGTTAAAGCAAATTATGTTC+TGG | - | chr3_1:28686252-28686271 | Msa0355050:CDS | 25.0% |
! | CAAATGAACTCTTAAATTTG+TGG | - | chr3_1:28686395-28686414 | Msa0355050:CDS | 25.0% |
! | AAGATTCATAGATATGAAGT+TGG | + | chr3_1:28686459-28686478 | None:intergenic | 25.0% |
!!! | TTTAAATTTTGACAATCTGC+AGG | + | chr3_1:28686863-28686882 | None:intergenic | 25.0% |
!! | TGAATTAATTTGAAAGGTCT+TGG | - | chr3_1:28686891-28686910 | Msa0355050:intron | 25.0% |
!!! | TAGCATTTTGAGAATTTCTA+TGG | - | chr3_1:28687054-28687073 | Msa0355050:intron | 25.0% |
!!! | ATTTTGAGAATTTCTATGGT+AGG | - | chr3_1:28687058-28687077 | Msa0355050:intron | 25.0% |
!! | AATTTCTATGGTAGGTTTTA+AGG | - | chr3_1:28687066-28687085 | Msa0355050:intron | 25.0% |
!! | AAATTTCTGGATTTCTGATT+GGG | - | chr3_1:28687110-28687129 | Msa0355050:intron | 25.0% |
!! | GTTAGTGAGTCTTATATTAA+GGG | + | chr3_1:28687267-28687286 | None:intergenic | 25.0% |
!!! | TGTATATTAGCTTTTCGAAT+TGG | - | chr3_1:28687346-28687365 | Msa0355050:intron | 25.0% |
! | GTATGAGGTCAATAATTATA+AGG | + | chr3_1:28687373-28687392 | None:intergenic | 25.0% |
!! | GATTTTCATAGACATAAAGA+TGG | + | chr3_1:28687510-28687529 | None:intergenic | 25.0% |
!!! | GACTTTTTCAGATTATAAGT+TGG | - | chr3_1:28687584-28687603 | Msa0355050:intron | 25.0% |
!! | GAGATTTTCATATGAACTTA+TGG | - | chr3_1:28687635-28687654 | Msa0355050:intron | 25.0% |
!! | GATTTTCATATGAACTTATG+GGG | - | chr3_1:28687637-28687656 | Msa0355050:intron | 25.0% |
! | ATTTCAAATTGAAATCAGGA+AGG | + | chr3_1:28687787-28687806 | None:intergenic | 25.0% |
!! | AGCTATTTCAAATTGAAATC+AGG | + | chr3_1:28687791-28687810 | None:intergenic | 25.0% |
! | ATTGCATTTACAATGAAAAG+GGG | + | chr3_1:28688190-28688209 | None:intergenic | 25.0% |
!! | TTATCATACCAATAACTTGT+GGG | + | chr3_1:28688251-28688270 | None:intergenic | 25.0% |
! | TTTATCATACCAATAACTTG+TGG | + | chr3_1:28688252-28688271 | None:intergenic | 25.0% |
!!! | ATGCAAATGACCATTTTTAA+AGG | - | chr3_1:28688290-28688309 | Msa0355050:intron | 25.0% |
! | TAATACAAAAACAAAGAGGA+AGG | - | chr3_1:28688474-28688493 | Msa0355050:intron | 25.0% |
! | AATACAAAAACAAAGAGGAA+GGG | - | chr3_1:28688475-28688494 | Msa0355050:intron | 25.0% |
! | ATATAGTTATTGATAGAACC+CGG | - | chr3_1:28688929-28688948 | Msa0355050:intron | 25.0% |
! | TGGAATTCAATAACTAGAAT+GGG | + | chr3_1:28689227-28689246 | None:intergenic | 25.0% |
! | ATGGAATTCAATAACTAGAA+TGG | + | chr3_1:28689228-28689247 | None:intergenic | 25.0% |
! | AGATTAGAAAGTAGAAACTA+TGG | + | chr3_1:28689377-28689396 | None:intergenic | 25.0% |
! | TTCTACTTTCTAATCTGAAA+TGG | - | chr3_1:28689381-28689400 | Msa0355050:intron | 25.0% |
!! | ATAAAATTTTATTCAGCCTC+AGG | + | chr3_1:28689587-28689606 | None:intergenic | 25.0% |
! | TATCCATATTATATGTCATC+GGG | - | chr3_1:28690193-28690212 | Msa0355050:intron | 25.0% |
! | CAAAATTAAGTAAAGTTGAC+AGG | - | chr3_1:28690452-28690471 | Msa0355050:intron | 25.0% |
!!! | GCTGTTTTGATAAGAAAATT+AGG | - | chr3_1:28690518-28690537 | Msa0355050:intron | 25.0% |
! | AGAAAATTAGGTATGTCAAT+CGG | - | chr3_1:28690530-28690549 | Msa0355050:intron | 25.0% |
!! | TTTTCATCATATTCTATCGA+AGG | + | chr3_1:28690643-28690662 | None:intergenic | 25.0% |
! | GAAAAATAAACTCATTCATC+AGG | + | chr3_1:28691048-28691067 | None:intergenic | 25.0% |
!! | GAAGGGTTTGATTTGAATAA+TGG | - | chr3_1:28685081-28685100 | Msa0355050:three_prime_UTR | 30.0% |
! | TTGTTGATAGAAGTAAAGTG+AGG | - | chr3_1:28685124-28685143 | Msa0355050:three_prime_UTR | 30.0% |
! | AAAAACTTCTTGAGAGGTAT+TGG | + | chr3_1:28685172-28685191 | None:intergenic | 30.0% |
AAGTGTAAAAACTTCTTGAG+AGG | + | chr3_1:28685178-28685197 | None:intergenic | 30.0% | |
TGTTAGCCATATTTGTATGT+TGG | - | chr3_1:28685386-28685405 | Msa0355050:three_prime_UTR | 30.0% | |
CACATCACATATACAACATA+TGG | + | chr3_1:28685598-28685617 | None:intergenic | 30.0% | |
TTAATAGGTGTTTACACCTA+TGG | + | chr3_1:28685737-28685756 | None:intergenic | 30.0% | |
AAAGCAAAATCTTAGACACA+GGG | + | chr3_1:28685850-28685869 | None:intergenic | 30.0% | |
AAAAGCAAAATCTTAGACAC+AGG | + | chr3_1:28685851-28685870 | None:intergenic | 30.0% | |
!!! | TGATTTTGTTATTCCTAAGG+GGG | - | chr3_1:28685932-28685951 | Msa0355050:CDS | 30.0% |
GACATTCAAAACATTGATGA+GGG | + | chr3_1:28686278-28686297 | None:intergenic | 30.0% | |
AGACATTCAAAACATTGATG+AGG | + | chr3_1:28686279-28686298 | None:intergenic | 30.0% | |
AAGTTGACAGAACAAAACAA+AGG | + | chr3_1:28686600-28686619 | None:intergenic | 30.0% | |
TGTAAATACAATGGTTGTGA+TGG | + | chr3_1:28686626-28686645 | None:intergenic | 30.0% | |
TCAGAAATCCAGAAATTTGT+AGG | + | chr3_1:28687108-28687127 | None:intergenic | 30.0% | |
! | CAAATTTCTGGATTTCTGAT+TGG | - | chr3_1:28687109-28687128 | Msa0355050:intron | 30.0% |
TCTTTACTTATCCAACCATT+TGG | - | chr3_1:28687160-28687179 | Msa0355050:intron | 30.0% | |
TACAAGATTAACCAAATGGT+TGG | + | chr3_1:28687174-28687193 | None:intergenic | 30.0% | |
ACCATTTGGTTAATCTTGTA+TGG | - | chr3_1:28687174-28687193 | Msa0355050:intron | 30.0% | |
CCATTTGGTTAATCTTGTAT+GGG | - | chr3_1:28687175-28687194 | Msa0355050:intron | 30.0% | |
CATTTGGTTAATCTTGTATG+GGG | - | chr3_1:28687176-28687195 | Msa0355050:intron | 30.0% | |
TGATATAAAATATGGCTTCC+CGG | + | chr3_1:28687215-28687234 | None:intergenic | 30.0% | |
! | GGTTAGTGAGTCTTATATTA+AGG | + | chr3_1:28687268-28687287 | None:intergenic | 30.0% |
TTTCTTAATACCCATGAATC+AGG | + | chr3_1:28687289-28687308 | None:intergenic | 30.0% | |
AATCACATAATGCAAGTATG+AGG | + | chr3_1:28687388-28687407 | None:intergenic | 30.0% | |
! | TACGAAAGGGTCTTATATAT+AGG | - | chr3_1:28687432-28687451 | Msa0355050:intron | 30.0% |
! | ACGAAAGGGTCTTATATATA+GGG | - | chr3_1:28687433-28687452 | Msa0355050:intron | 30.0% |
GTTAAATTACGACTTTGATC+TGG | - | chr3_1:28687853-28687872 | Msa0355050:intron | 30.0% | |
! | TATCATACCAATAACTTGTG+GGG | + | chr3_1:28688250-28688269 | None:intergenic | 30.0% |
!!! | TATTTTAGGGCAACTAATTC+AGG | + | chr3_1:28688343-28688362 | None:intergenic | 30.0% |
! | AATAAATTTTAAGCTGCACG+AGG | - | chr3_1:28688359-28688378 | Msa0355050:intron | 30.0% |
TTTGCAATAGTAGACTGAAA+AGG | + | chr3_1:28688758-28688777 | None:intergenic | 30.0% | |
TATAGTTATTGATAGAACCC+GGG | - | chr3_1:28688930-28688949 | Msa0355050:intron | 30.0% | |
ATGAAACAGAATTGCTTAAG+AGG | - | chr3_1:28689018-28689037 | Msa0355050:intron | 30.0% | |
TGAAACAGAATTGCTTAAGA+GGG | - | chr3_1:28689019-28689038 | Msa0355050:intron | 30.0% | |
! | AATACTTTGGAAGAAGTAGT+TGG | + | chr3_1:28689194-28689213 | None:intergenic | 30.0% |
ACATAAATTGCCTAAAAGGT+GGG | + | chr3_1:28689294-28689313 | None:intergenic | 30.0% | |
ACATGTAACTGAATTACTTG+TGG | - | chr3_1:28689332-28689351 | Msa0355050:intron | 30.0% | |
AGAAACTATGGAGTTATAGA+AGG | + | chr3_1:28689365-28689384 | None:intergenic | 30.0% | |
! | ATTTCCAACAAAATCCCTTT+TGG | + | chr3_1:28689414-28689433 | None:intergenic | 30.0% |
ATGCTAAAAAGAAACCTTGA+AGG | - | chr3_1:28689767-28689786 | Msa0355050:CDS | 30.0% | |
TGCTAAAAAGAAACCTTGAA+GGG | - | chr3_1:28689768-28689787 | Msa0355050:CDS | 30.0% | |
ACATATTCATTGGGTAATAG+GGG | + | chr3_1:28690363-28690382 | None:intergenic | 30.0% | |
CACATATTCATTGGGTAATA+GGG | + | chr3_1:28690364-28690383 | None:intergenic | 30.0% | |
GTTGTAAGCACATATTCATT+GGG | + | chr3_1:28690372-28690391 | None:intergenic | 30.0% | |
TGATGAAAATGAAGATGATC+AGG | - | chr3_1:28690654-28690673 | Msa0355050:intron | 30.0% | |
GATGAAAATGAAGATGATCA+GGG | - | chr3_1:28690655-28690674 | Msa0355050:intron | 30.0% | |
ATGAAAATGAAGATGATCAG+GGG | - | chr3_1:28690656-28690675 | Msa0355050:intron | 30.0% | |
AGGATAATATAGGAACAGAT+TGG | + | chr3_1:28690724-28690743 | None:intergenic | 30.0% | |
TATGAAACTTTCAACTGCAT+TGG | + | chr3_1:28690953-28690972 | None:intergenic | 30.0% | |
AGTTCAATAGAGCATAAGAA+TGG | + | chr3_1:28690976-28690995 | None:intergenic | 30.0% | |
TCTATTGAACTGATAAAAGC+AGG | - | chr3_1:28690985-28691004 | Msa0355050:CDS | 30.0% | |
!!! | TTTTTTGGTATGGAGAGTGA+AGG | - | chr3_1:28685063-28685082 | Msa0355050:three_prime_UTR | 35.0% |
!! | TTTTTGGTATGGAGAGTGAA+GGG | - | chr3_1:28685064-28685083 | Msa0355050:three_prime_UTR | 35.0% |
AATGGTAAGAAGATTGGTGA+TGG | - | chr3_1:28685099-28685118 | Msa0355050:three_prime_UTR | 35.0% | |
CTCTTGAGATGTTGTTATCA+AGG | - | chr3_1:28685198-28685217 | Msa0355050:three_prime_UTR | 35.0% | |
TTCTGGCCAACATACAAATA+TGG | + | chr3_1:28685395-28685414 | None:intergenic | 35.0% | |
! | TTTTCCTAAAACCCTGATTC+TGG | + | chr3_1:28685412-28685431 | None:intergenic | 35.0% |
!!! | AGAATCAGGGTTTTAGGAAA+AGG | - | chr3_1:28685411-28685430 | Msa0355050:CDS | 35.0% |
ATACAACATATGGACCTCAA+AGG | + | chr3_1:28685588-28685607 | None:intergenic | 35.0% | |
AGAAACATGGCAGGTTTAAT+AGG | + | chr3_1:28685752-28685771 | None:intergenic | 35.0% | |
! | GTCATATAAACATGGTGTTG+CGG | + | chr3_1:28685783-28685802 | None:intergenic | 35.0% |
GCAACACCATGTTTATATGA+CGG | - | chr3_1:28685782-28685801 | Msa0355050:CDS | 35.0% | |
ACTTTACATTAAACCCCCTT+AGG | + | chr3_1:28685948-28685967 | None:intergenic | 35.0% | |
TAAGGGGGTTTAATGTAAAG+TGG | - | chr3_1:28685947-28685966 | Msa0355050:CDS | 35.0% | |
GGAAACTATAGATCTCATAC+TGG | - | chr3_1:28686094-28686113 | Msa0355050:CDS | 35.0% | |
AAGAGTTCATTTGTGCGTAA+AGG | + | chr3_1:28686388-28686407 | None:intergenic | 35.0% | |
AGTTGGCGACAAATCAAAAA+TGG | + | chr3_1:28686504-28686523 | None:intergenic | 35.0% | |
TGTTTACAGACACAGTAAGT+TGG | + | chr3_1:28686521-28686540 | None:intergenic | 35.0% | |
CTTACTGTGTCTGTAAACAT+CGG | - | chr3_1:28686522-28686541 | Msa0355050:intron | 35.0% | |
TTACTGTGTCTGTAAACATC+GGG | - | chr3_1:28686523-28686542 | Msa0355050:intron | 35.0% | |
CCAGAAATTTGTAGGTAGAT+TGG | + | chr3_1:28687100-28687119 | None:intergenic | 35.0% | |
CCAATCTACCTACAAATTTC+TGG | - | chr3_1:28687097-28687116 | Msa0355050:intron | 35.0% | |
ATAATGATAACTATCTGGCC+TGG | + | chr3_1:28687136-28687155 | None:intergenic | 35.0% | |
CCCATACAAGATTAACCAAA+TGG | + | chr3_1:28687178-28687197 | None:intergenic | 35.0% | |
! | GTGAGTCTTATATTAAGGGA+CGG | + | chr3_1:28687263-28687282 | None:intergenic | 35.0% |
AGCAAGCAATAAAGTTGTCA+GGG | - | chr3_1:28687322-28687341 | Msa0355050:CDS | 35.0% | |
TATCCACCAATACTTACGAA+AGG | - | chr3_1:28687418-28687437 | Msa0355050:intron | 35.0% | |
ATCCACCAATACTTACGAAA+GGG | - | chr3_1:28687419-28687438 | Msa0355050:intron | 35.0% | |
TAAGACCCTTTCGTAAGTAT+TGG | + | chr3_1:28687427-28687446 | None:intergenic | 35.0% | |
GTCTTATATATAGGGACAGA+AGG | - | chr3_1:28687441-28687460 | Msa0355050:intron | 35.0% | |
AAGAGACAATCATCTTTCAC+AGG | - | chr3_1:28687613-28687632 | Msa0355050:intron | 35.0% | |
! | ACACACACAACACTTTTATC+TGG | - | chr3_1:28687741-28687760 | Msa0355050:intron | 35.0% |
!! | TTATATTTTTGCTGGCAGCT+TGG | - | chr3_1:28687812-28687831 | Msa0355050:intron | 35.0% |
CTGTTTGTATTGTTATCGCT+AGG | + | chr3_1:28687890-28687909 | None:intergenic | 35.0% | |
ACTTCATAAACTTCCTGATC+TGG | + | chr3_1:28688398-28688417 | None:intergenic | 35.0% | |
ATGTAGCTGGGTGAATAAAA+AGG | + | chr3_1:28688634-28688653 | None:intergenic | 35.0% | |
ATAGTTATTGATAGAACCCG+GGG | - | chr3_1:28688931-28688950 | Msa0355050:intron | 35.0% | |
AGTTGTTGGGATCAAAGTAT+GGG | - | chr3_1:28688966-28688985 | Msa0355050:intron | 35.0% | |
GGGTTGTTCTAACAATACTT+TGG | + | chr3_1:28689207-28689226 | None:intergenic | 35.0% | |
CATAAATTGCCTAAAAGGTG+GGG | + | chr3_1:28689293-28689312 | None:intergenic | 35.0% | |
GACATAAATTGCCTAAAAGG+TGG | + | chr3_1:28689295-28689314 | None:intergenic | 35.0% | |
GCAGACATAAATTGCCTAAA+AGG | + | chr3_1:28689298-28689317 | None:intergenic | 35.0% | |
! | CAATCCAAAAGGGATTTTGT+TGG | - | chr3_1:28689407-28689426 | Msa0355050:intron | 35.0% |
GCAACTCAAATGTCGTAATT+AGG | + | chr3_1:28689467-28689486 | None:intergenic | 35.0% | |
!!! | TGGTTTTGTAAGGATGAGTT+AGG | - | chr3_1:28689533-28689552 | Msa0355050:intron | 35.0% |
!!! | AACAGATTTTTTAGGTCCTG+AGG | - | chr3_1:28689568-28689587 | Msa0355050:intron | 35.0% |
!! | CTTCTTTGGAGCAAATGAAA+AGG | + | chr3_1:28689687-28689706 | None:intergenic | 35.0% |
GATCTCGAAGTATGCAAAAA+TGG | - | chr3_1:28689869-28689888 | Msa0355050:intron | 35.0% | |
AGTCTGATACATCCAAGAAA+TGG | - | chr3_1:28690040-28690059 | Msa0355050:CDS | 35.0% | |
GTCTGATACATCCAAGAAAT+GGG | - | chr3_1:28690041-28690060 | Msa0355050:CDS | 35.0% | |
! | TTGTGATGCAAATTTTGTGC+AGG | + | chr3_1:28690100-28690119 | None:intergenic | 35.0% |
ATGTTAGATCTTTCAAGCTC+AGG | + | chr3_1:28690157-28690176 | None:intergenic | 35.0% | |
ACTCCCGATGACATATAATA+TGG | + | chr3_1:28690199-28690218 | None:intergenic | 35.0% | |
TCATGTTATGATGCCTTCAT+CGG | - | chr3_1:28690222-28690241 | Msa0355050:intron | 35.0% | |
GCACATATTCATTGGGTAAT+AGG | + | chr3_1:28690365-28690384 | None:intergenic | 35.0% | |
GGTTGTAAGCACATATTCAT+TGG | + | chr3_1:28690373-28690392 | None:intergenic | 35.0% | |
ATGAATATGTGCTTACAACC+AGG | - | chr3_1:28690373-28690392 | Msa0355050:intron | 35.0% | |
! | CAGTTTGTCAGTAAGTTGAA+TGG | - | chr3_1:28690589-28690608 | Msa0355050:intron | 35.0% |
!! | TAAGTTGAATGGTGTTGATG+TGG | - | chr3_1:28690600-28690619 | Msa0355050:intron | 35.0% |
TCATCATATTCTATCGAAGG+AGG | + | chr3_1:28690640-28690659 | None:intergenic | 35.0% | |
TTAGTCATTTCGACGACATT+GGG | + | chr3_1:28690698-28690717 | None:intergenic | 35.0% | |
AATGTCGTCGAAATGACTAA+GGG | - | chr3_1:28690698-28690717 | Msa0355050:intron | 35.0% | |
GTTCCTATATTATCCTGTCA+AGG | - | chr3_1:28690728-28690747 | Msa0355050:intron | 35.0% | |
GATCCTTGACAGGATAATAT+AGG | + | chr3_1:28690734-28690753 | None:intergenic | 35.0% | |
! | AACAGTTTTCCATTGAAGCA+AGG | + | chr3_1:28690767-28690786 | None:intergenic | 35.0% |
ACACCCTTATCAATTATAGC+TGG | - | chr3_1:28690837-28690856 | Msa0355050:intron | 35.0% | |
CACCCTTATCAATTATAGCT+GGG | - | chr3_1:28690838-28690857 | Msa0355050:intron | 35.0% | |
ACCCTTATCAATTATAGCTG+GGG | - | chr3_1:28690839-28690858 | Msa0355050:intron | 35.0% | |
CATTTGAGGAAGCAGTATTA+AGG | + | chr3_1:28690870-28690889 | None:intergenic | 35.0% | |
TTTGTATGTTGGCCAGAATC+AGG | - | chr3_1:28685397-28685416 | Msa0355050:exon | 40.0% | |
TTGTATGTTGGCCAGAATCA+GGG | - | chr3_1:28685398-28685417 | Msa0355050:exon | 40.0% | |
GCGTCACAACTTAGATATTG+CGG | + | chr3_1:28685444-28685463 | None:intergenic | 40.0% | |
CACTACAGTCACAAATACCT+CGG | + | chr3_1:28685466-28685485 | None:intergenic | 40.0% | |
CAAATTATCCTAGAGAACGG+CGG | + | chr3_1:28685525-28685544 | None:intergenic | 40.0% | |
ATGAACCATTACATACGCCA+TGG | + | chr3_1:28685701-28685720 | None:intergenic | 40.0% | |
ATAGGTGTTTACACCTATGG+CGG | + | chr3_1:28685734-28685753 | None:intergenic | 40.0% | |
CTTAGACACAGGGTTATCAA+TGG | + | chr3_1:28685840-28685859 | None:intergenic | 40.0% | |
GGGGTTTAATGTAAAGTGGT+TGG | - | chr3_1:28685951-28685970 | Msa0355050:CDS | 40.0% | |
ATCTTCATGCCCTTCTTCTT+CGG | + | chr3_1:28686134-28686153 | None:intergenic | 40.0% | |
TTCTGCGCAATTCTTTGTCT+CGG | + | chr3_1:28686172-28686191 | None:intergenic | 40.0% | |
TAAATTTGTGGACGCACATG+TGG | - | chr3_1:28686407-28686426 | Msa0355050:CDS | 40.0% | |
ATGTAGAGGACTAACTAACG+TGG | - | chr3_1:28686567-28686586 | Msa0355050:intron | 40.0% | |
ATGGGGATGCTTAATATGTC+CGG | - | chr3_1:28687193-28687212 | Msa0355050:intron | 40.0% | |
GTCTTATATTAAGGGACGGA+GGG | + | chr3_1:28687259-28687278 | None:intergenic | 40.0% | |
! | AGTCTTATATTAAGGGACGG+AGG | + | chr3_1:28687260-28687279 | None:intergenic | 40.0% |
AGACTCACTAACCTGATTCA+TGG | - | chr3_1:28687275-28687294 | Msa0355050:CDS | 40.0% | |
GACTCACTAACCTGATTCAT+GGG | - | chr3_1:28687276-28687295 | Msa0355050:CDS | 40.0% | |
CAGCAAGCAATAAAGTTGTC+AGG | - | chr3_1:28687321-28687340 | Msa0355050:CDS | 40.0% | |
GCACTCTCTTGAACATTTCT+TGG | + | chr3_1:28687488-28687507 | None:intergenic | 40.0% | |
AAACTGACGTCAATCGTAGT+TGG | - | chr3_1:28687530-28687549 | Msa0355050:intron | 40.0% | |
AACTGACGTCAATCGTAGTT+GGG | - | chr3_1:28687531-28687550 | Msa0355050:intron | 40.0% | |
AGCAGAATCAAGCTAGACTA+TGG | + | chr3_1:28687709-28687728 | None:intergenic | 40.0% | |
! | GCTTCTCTTCGAGTTATCAT+CGG | + | chr3_1:28687936-28687955 | None:intergenic | 40.0% |
!! | AGAAGCACTATTCAAGAGAC+AGG | - | chr3_1:28687950-28687969 | Msa0355050:intron | 40.0% |
! | AAGTTTGCACTCTGAAAGGT+TGG | + | chr3_1:28688130-28688149 | None:intergenic | 40.0% |
GTCAAAGTTTGCACTCTGAA+AGG | + | chr3_1:28688134-28688153 | None:intergenic | 40.0% | |
TTGAAAACCATGACCAGATC+AGG | - | chr3_1:28688382-28688401 | Msa0355050:intron | 40.0% | |
TAAACTTCCTGATCTGGTCA+TGG | + | chr3_1:28688392-28688411 | None:intergenic | 40.0% | |
AAGGGTCACAATAGGAAAGT+GGG | - | chr3_1:28688493-28688512 | Msa0355050:intron | 40.0% | |
AAAACCAGAGGTGATCCAAT+CGG | - | chr3_1:28688531-28688550 | Msa0355050:intron | 40.0% | |
!! | GTTTCTAGTTTCTACCCGAT+TGG | + | chr3_1:28688549-28688568 | None:intergenic | 40.0% |
TCATTAGGCAGTATGTAGCT+GGG | + | chr3_1:28688646-28688665 | None:intergenic | 40.0% | |
ATCATTAGGCAGTATGTAGC+TGG | + | chr3_1:28688647-28688666 | None:intergenic | 40.0% | |
CATTCTGATGCATGATCATC+TGG | + | chr3_1:28688803-28688822 | None:intergenic | 40.0% | |
TCATTTACTCCATGGACTTC+AGG | + | chr3_1:28688830-28688849 | None:intergenic | 40.0% | |
! | ATGAAGAAAAGAAGCACACC+TGG | + | chr3_1:28688857-28688876 | None:intergenic | 40.0% |
CAGTTGTTGGGATCAAAGTA+TGG | - | chr3_1:28688965-28688984 | Msa0355050:intron | 40.0% | |
CATAATCCTCCTCAAGTACT+AGG | + | chr3_1:28688995-28689014 | None:intergenic | 40.0% | |
AACAGAATTGCTTAAGAGGG+AGG | - | chr3_1:28689022-28689041 | Msa0355050:intron | 40.0% | |
ACAGAATTGCTTAAGAGGGA+GGG | - | chr3_1:28689023-28689042 | Msa0355050:intron | 40.0% | |
! | TATTTTCTCCTCTCTCAGTC+CGG | - | chr3_1:28689151-28689170 | Msa0355050:intron | 40.0% |
AGTAGTTGGCCATTACTCAT+AGG | + | chr3_1:28689180-28689199 | None:intergenic | 40.0% | |
TGAAATGGCGTCAATCCAAA+AGG | - | chr3_1:28689396-28689415 | Msa0355050:intron | 40.0% | |
GAAATGGCGTCAATCCAAAA+GGG | - | chr3_1:28689397-28689416 | Msa0355050:intron | 40.0% | |
ATGTCGTAATTAGGCGACAA+GGG | + | chr3_1:28689458-28689477 | None:intergenic | 40.0% | |
AATGTCGTAATTAGGCGACA+AGG | + | chr3_1:28689459-28689478 | None:intergenic | 40.0% | |
!! | ACATTTGAGTTGCCTTGTGT+TGG | - | chr3_1:28689474-28689493 | Msa0355050:intron | 40.0% |
CCTTACAAAACCAGCTTGTA+AGG | + | chr3_1:28689526-28689545 | None:intergenic | 40.0% | |
!!! | CCTTACAAGCTGGTTTTGTA+AGG | - | chr3_1:28689523-28689542 | Msa0355050:intron | 40.0% |
ATCCTTAGTTCGCTCTTCTT+TGG | + | chr3_1:28689701-28689720 | None:intergenic | 40.0% | |
AAGAAGAGCGAACTAAGGAT+TGG | - | chr3_1:28689701-28689720 | Msa0355050:CDS | 40.0% | |
AGAAGAGCGAACTAAGGATT+GGG | - | chr3_1:28689702-28689721 | Msa0355050:CDS | 40.0% | |
AACTTCCATCCTCACATGTA+CGG | + | chr3_1:28689816-28689835 | None:intergenic | 40.0% | |
AATGAAGCATGTGCTCAACA+AGG | - | chr3_1:28689839-28689858 | Msa0355050:intron | 40.0% | |
ATGAAGCATGTGCTCAACAA+GGG | - | chr3_1:28689840-28689859 | Msa0355050:intron | 40.0% | |
CATGTATACTATTGCTGCTG+GGG | + | chr3_1:28689928-28689947 | None:intergenic | 40.0% | |
CCATGTATACTATTGCTGCT+GGG | + | chr3_1:28689929-28689948 | None:intergenic | 40.0% | |
ACCATGTATACTATTGCTGC+TGG | + | chr3_1:28689930-28689949 | None:intergenic | 40.0% | |
GAACAATAGGTCCCATTTCT+TGG | + | chr3_1:28690055-28690074 | None:intergenic | 40.0% | |
CATTTCGAGCTCAGAACAAT+AGG | + | chr3_1:28690068-28690087 | None:intergenic | 40.0% | |
AGTCTGATGCATCCAAGAAA+TGG | - | chr3_1:28690121-28690140 | Msa0355050:intron | 40.0% | |
GTCTGATGCATCCAAGAAAT+GGG | - | chr3_1:28690122-28690141 | Msa0355050:intron | 40.0% | |
TCTGATGCATCCAAGAAATG+GGG | - | chr3_1:28690123-28690142 | Msa0355050:intron | 40.0% | |
CACTACAATCATGTTCCACA+AGG | - | chr3_1:28690307-28690326 | Msa0355050:intron | 40.0% | |
TACAATCATGTTCCACAAGG+CGG | - | chr3_1:28690310-28690329 | Msa0355050:intron | 40.0% | |
ATTCATTGGGTAATAGGGGT+AGG | + | chr3_1:28690359-28690378 | None:intergenic | 40.0% | |
!! | GGAAACAACTTGCTGAAAGA+CGG | - | chr3_1:28690551-28690570 | Msa0355050:intron | 40.0% |
!! | GGTGTTGATGTGGATCTTAA+TGG | - | chr3_1:28690610-28690629 | Msa0355050:intron | 40.0% |
CTTAGTCATTTCGACGACAT+TGG | + | chr3_1:28690699-28690718 | None:intergenic | 40.0% | |
CAATGTCGTCGAAATGACTA+AGG | - | chr3_1:28690697-28690716 | Msa0355050:intron | 40.0% | |
AATAGAGACAGATCCTTGAC+AGG | + | chr3_1:28690744-28690763 | None:intergenic | 40.0% | |
GTCTCTATTCCTTGCTTCAA+TGG | - | chr3_1:28690755-28690774 | Msa0355050:intron | 40.0% | |
AACTGTTGCCTCGCATTAAT+TGG | - | chr3_1:28690780-28690799 | Msa0355050:intron | 40.0% | |
AAGCCTCATATAGCAAGTGA+TGG | + | chr3_1:28690806-28690825 | None:intergenic | 40.0% | |
GCCCCAGCTATAATTGATAA+GGG | + | chr3_1:28690843-28690862 | None:intergenic | 40.0% | |
TGCCCCAGCTATAATTGATA+AGG | + | chr3_1:28690844-28690863 | None:intergenic | 40.0% | |
TCAACTGCATTGGACATTGT+CGG | + | chr3_1:28690943-28690962 | None:intergenic | 40.0% | |
! | TTGGCCAGAATCAGGGTTTT+AGG | - | chr3_1:28685405-28685424 | Msa0355050:exon | 45.0% |
ATATCTAAGTTGTGACGCCG+AGG | - | chr3_1:28685446-28685465 | Msa0355050:CDS | 45.0% | |
TAGTGTGATCATCGCGATCA+AGG | - | chr3_1:28685481-28685500 | Msa0355050:CDS | 45.0% | |
TTCCACCATGGCGTATGTAA+TGG | - | chr3_1:28685693-28685712 | Msa0355050:CDS | 45.0% | |
AACCATTACATACGCCATGG+TGG | + | chr3_1:28685698-28685717 | None:intergenic | 45.0% | |
! | CATTTTGTGTTAGCCGCCAT+AGG | - | chr3_1:28685718-28685737 | Msa0355050:CDS | 45.0% |
TGGCATACTGCGTTGTATGA+TGG | + | chr3_1:28685820-28685839 | None:intergenic | 45.0% | |
TGATGCACTGAATGCAGAGA+AGG | - | chr3_1:28686073-28686092 | Msa0355050:CDS | 45.0% | |
! | GATCTCATACTGGCTGAAGT+TGG | - | chr3_1:28686104-28686123 | Msa0355050:CDS | 45.0% |
TCTGCGCAATTCTTTGTCTC+GGG | + | chr3_1:28686171-28686190 | None:intergenic | 45.0% | |
AGTGATGTCTGCACAAGATG+AGG | - | chr3_1:28686309-28686328 | Msa0355050:CDS | 45.0% | |
! | CTGTTGTTGTGAAGTGCTTG+AGG | - | chr3_1:28686335-28686354 | Msa0355050:CDS | 45.0% |
TGGGGATGCTTAATATGTCC+GGG | - | chr3_1:28687194-28687213 | Msa0355050:intron | 45.0% | |
!! | GACCCTTTCGTAAGTATTGG+TGG | + | chr3_1:28687424-28687443 | None:intergenic | 45.0% |
CAAGCTAGACTATGGTTGAG+AGG | + | chr3_1:28687701-28687720 | None:intergenic | 45.0% | |
!! | CGAGTTATCATCGGTGTCAT+CGG | + | chr3_1:28687927-28687946 | None:intergenic | 45.0% |
ATCAGTCCAACAAGAGCAAG+AGG | - | chr3_1:28687976-28687995 | Msa0355050:intron | 45.0% | |
CTATGTGCCCCACAAGTTAT+TGG | - | chr3_1:28688240-28688259 | Msa0355050:CDS | 45.0% | |
CAAAGAGGAAGGGTCACAAT+AGG | - | chr3_1:28688485-28688504 | Msa0355050:intron | 45.0% | |
GAAGGGTCACAATAGGAAAG+TGG | - | chr3_1:28688492-28688511 | Msa0355050:intron | 45.0% | |
GTGTCTATGCACAAAACCAG+AGG | - | chr3_1:28688519-28688538 | Msa0355050:intron | 45.0% | |
AAACCAGAGGTGATCCAATC+GGG | - | chr3_1:28688532-28688551 | Msa0355050:intron | 45.0% | |
TGCAAATGCTGATGCTGTTG+AGG | - | chr3_1:28688772-28688791 | Msa0355050:intron | 45.0% | |
TCTGATGCATGATCATCTGG+AGG | + | chr3_1:28688800-28688819 | None:intergenic | 45.0% | |
CTGGCTGATCATTTACTCCA+TGG | + | chr3_1:28688838-28688857 | None:intergenic | 45.0% | |
CATGGAGTAAATGATCAGCC+AGG | - | chr3_1:28688836-28688855 | Msa0355050:intron | 45.0% | |
ATTGATAGAACCCGGGGAAT+AGG | - | chr3_1:28688937-28688956 | Msa0355050:intron | 45.0% | |
GAATAGGTGGGTCAGTTGTT+GGG | - | chr3_1:28688953-28688972 | Msa0355050:intron | 45.0% | |
TATGGGAAGCCTAGTACTTG+AGG | - | chr3_1:28688983-28689002 | Msa0355050:intron | 45.0% | |
TTGCTTAAGAGGGAGGGAAT+TGG | - | chr3_1:28689029-28689048 | Msa0355050:intron | 45.0% | |
! | ATTGGTTGCACTTGCTGAGT+TGG | - | chr3_1:28689047-28689066 | Msa0355050:intron | 45.0% |
AGGACAGGTAGCAGAAATAG+TGG | - | chr3_1:28689079-28689098 | Msa0355050:intron | 45.0% | |
GGACAGGTAGCAGAAATAGT+GGG | - | chr3_1:28689080-28689099 | Msa0355050:intron | 45.0% | |
! | AGGTAGCAGAAATAGTGGGA+AGG | - | chr3_1:28689084-28689103 | Msa0355050:intron | 45.0% |
! | TAGCAGAAATAGTGGGAAGG+AGG | - | chr3_1:28689087-28689106 | Msa0355050:intron | 45.0% |
! | AGCAGAAATAGTGGGAAGGA+GGG | - | chr3_1:28689088-28689107 | Msa0355050:intron | 45.0% |
! | CTCATCTTTCCCCACCTTTT+AGG | - | chr3_1:28689281-28689300 | Msa0355050:intron | 45.0% |
TGTCGTAATTAGGCGACAAG+GGG | + | chr3_1:28689457-28689476 | None:intergenic | 45.0% | |
CAAAACCAGCTTGTAAGGTG+AGG | + | chr3_1:28689521-28689540 | None:intergenic | 45.0% | |
CTCCAAAGAAGAGCGAACTA+AGG | - | chr3_1:28689696-28689715 | Msa0355050:CDS | 45.0% | |
GAAGAGCGAACTAAGGATTG+GGG | - | chr3_1:28689703-28689722 | Msa0355050:CDS | 45.0% | |
CAGCATGAACAATCCCTTCA+AGG | + | chr3_1:28689784-28689803 | None:intergenic | 45.0% | |
TGAAGCATGTGCTCAACAAG+GGG | - | chr3_1:28689841-28689860 | Msa0355050:intron | 45.0% | |
CCCAGCAGCAATAGTATACA+TGG | - | chr3_1:28689926-28689945 | Msa0355050:CDS | 45.0% | |
TTGTACTCCACCTGCATCTT+TGG | - | chr3_1:28689970-28689989 | Msa0355050:CDS | 45.0% | |
GGACAATGAACCCCATTTCT+TGG | + | chr3_1:28690136-28690155 | None:intergenic | 45.0% | |
! | TGATACATTTGCGCCGATGA+AGG | + | chr3_1:28690238-28690257 | None:intergenic | 45.0% |
ATGTACCAGCATGATTCTGC+AGG | + | chr3_1:28690276-28690295 | None:intergenic | 45.0% | |
AGATTCCTACAGGTCAGTCA+TGG | - | chr3_1:28690398-28690417 | Msa0355050:intron | 45.0% | |
AGTGATGGCCAATTAATGCG+AGG | + | chr3_1:28690791-28690810 | None:intergenic | 45.0% | |
!! | TGGCCATCACTTGCTATATG+AGG | - | chr3_1:28690800-28690819 | Msa0355050:intron | 45.0% |
AAAGCCAGACGGATCATTTG+AGG | + | chr3_1:28690884-28690903 | None:intergenic | 45.0% | |
CCAAAGATCTCAAAGCCAGA+CGG | + | chr3_1:28690895-28690914 | None:intergenic | 45.0% | |
!!! | TTTTTTTTTTTTTTTTACAT+TGG | - | chr3_1:28688896-28688915 | Msa0355050:intron | 5.0% |
! | ACCTGCCATGTTTCTGCCAT+CGG | - | chr3_1:28685757-28685776 | Msa0355050:CDS | 50.0% |
!! | AGTTGGCCTTCCGAAGAAGA+AGG | - | chr3_1:28686121-28686140 | Msa0355050:CDS | 50.0% |
!! | GTTGGCCTTCCGAAGAAGAA+GGG | - | chr3_1:28686122-28686141 | Msa0355050:CDS | 50.0% |
TCATGCCCTTCTTCTTCGGA+AGG | + | chr3_1:28686130-28686149 | None:intergenic | 50.0% | |
! | GTTGTGAAGTGCTTGAGGCT+CGG | - | chr3_1:28686340-28686359 | Msa0355050:CDS | 50.0% |
TCTGGATTTCTGATTGGGCC+AGG | - | chr3_1:28687115-28687134 | Msa0355050:intron | 50.0% | |
!! | ATCGGTGTCATCGGAGAACA+GGG | + | chr3_1:28687918-28687937 | None:intergenic | 50.0% |
TCCAACAAGAGCAAGAGGTG+AGG | - | chr3_1:28687981-28688000 | Msa0355050:intron | 50.0% | |
CCAACAAGAGCAAGAGGTGA+GGG | - | chr3_1:28687982-28688001 | Msa0355050:intron | 50.0% | |
GAATGTCAGCCTGAAGTCCA+TGG | - | chr3_1:28688818-28688837 | Msa0355050:intron | 50.0% | |
ATAGAACCCGGGGAATAGGT+GGG | - | chr3_1:28688941-28688960 | Msa0355050:intron | 50.0% | |
GGAATAGGTGGGTCAGTTGT+TGG | - | chr3_1:28688952-28688971 | Msa0355050:intron | 50.0% | |
! | TTGCACTTGCTGAGTTGGCA+GGG | - | chr3_1:28689052-28689071 | Msa0355050:intron | 50.0% |
! | GCAGAAATAGTGGGAAGGAG+GGG | - | chr3_1:28689089-28689108 | Msa0355050:intron | 50.0% |
GTCCGGATGCCTATGAGTAA+TGG | - | chr3_1:28689168-28689187 | Msa0355050:intron | 50.0% | |
GGCCATTACTCATAGGCATC+CGG | + | chr3_1:28689173-28689192 | None:intergenic | 50.0% | |
CAAGGGGCAGATCGCAATAA+AGG | + | chr3_1:28689441-28689460 | None:intergenic | 50.0% | |
!! | TGCCTTGTGTTGGCTTTGAG+AGG | - | chr3_1:28689484-28689503 | Msa0355050:intron | 50.0% |
!! | GCCTTGTGTTGGCTTTGAGA+GGG | - | chr3_1:28689485-28689504 | Msa0355050:intron | 50.0% |
ACCCTCTCAAAGCCAACACA+AGG | + | chr3_1:28689489-28689508 | None:intergenic | 50.0% | |
!! | TTGTGTTGGCTTTGAGAGGG+TGG | - | chr3_1:28689488-28689507 | Msa0355050:intron | 50.0% |
AGCGAACTAAGGATTGGGGT+TGG | - | chr3_1:28689707-28689726 | Msa0355050:CDS | 50.0% | |
GCGAACTAAGGATTGGGGTT+GGG | - | chr3_1:28689708-28689727 | Msa0355050:CDS | 50.0% | |
CGAACTAAGGATTGGGGTTG+GGG | - | chr3_1:28689709-28689728 | Msa0355050:CDS | 50.0% | |
TTCCATCCTCACATGTACGG+CGG | + | chr3_1:28689813-28689832 | None:intergenic | 50.0% | |
! | TTCGTAACGGTTTTGCTGCG+AGG | + | chr3_1:28689999-28690018 | None:intergenic | 50.0% |
ATAGGGGTAGGACATCATGC+CGG | + | chr3_1:28690347-28690366 | None:intergenic | 50.0% | |
CAACCAGGTCAGATTCCTAC+AGG | - | chr3_1:28690388-28690407 | Msa0355050:intron | 50.0% | |
TGACCTGTAGGAATCTGACC+TGG | + | chr3_1:28690394-28690413 | None:intergenic | 50.0% | |
ACAAACTGTCCTCTCACACG+AGG | + | chr3_1:28690577-28690596 | None:intergenic | 50.0% | |
ATGAAGATGATCAGGGGAGC+TGG | - | chr3_1:28690662-28690681 | Msa0355050:intron | 50.0% | |
GCTTCCTCAAATGATCCGTC+TGG | - | chr3_1:28690877-28690896 | Msa0355050:intron | 50.0% | |
!! | CCGTCTGGCTTTGAGATCTT+TGG | - | chr3_1:28690892-28690911 | Msa0355050:intron | 50.0% |
ACCTTTGACCGCCGTTCTCT+AGG | - | chr3_1:28685514-28685533 | Msa0355050:CDS | 55.0% | |
TCCTAGAGAACGGCGGTCAA+AGG | + | chr3_1:28685518-28685537 | None:intergenic | 55.0% | |
!! | AAACATGGTGTTGCGGCCGA+TGG | + | chr3_1:28685776-28685795 | None:intergenic | 55.0% |
TGTGGACGCACATGTGGAGA+AGG | - | chr3_1:28686413-28686432 | Msa0355050:CDS | 55.0% | |
!! | CATCGGTGTCATCGGAGAAC+AGG | + | chr3_1:28687919-28687938 | None:intergenic | 55.0% |
CCCTCACCTCTTGCTCTTGT+TGG | + | chr3_1:28687985-28688004 | None:intergenic | 55.0% | |
CTACCCGATTGGATCACCTC+TGG | + | chr3_1:28688538-28688557 | None:intergenic | 55.0% | |
GATAGAACCCGGGGAATAGG+TGG | - | chr3_1:28688940-28688959 | Msa0355050:intron | 55.0% | |
AACTGACCCACCTATTCCCC+GGG | + | chr3_1:28688950-28688969 | None:intergenic | 55.0% | |
CAACTGACCCACCTATTCCC+CGG | + | chr3_1:28688951-28688970 | None:intergenic | 55.0% | |
GGGAAGCCTAGTACTTGAGG+AGG | - | chr3_1:28688986-28689005 | Msa0355050:intron | 55.0% | |
! | GTTGCACTTGCTGAGTTGGC+AGG | - | chr3_1:28689051-28689070 | Msa0355050:intron | 55.0% |
! | TGCTGAGTTGGCAGGGTGTT+AGG | - | chr3_1:28689059-28689078 | Msa0355050:intron | 55.0% |
! | AGTTGGCAGGGTGTTAGGAC+AGG | - | chr3_1:28689064-28689083 | Msa0355050:intron | 55.0% |
ATAGGCATCCGGACTGAGAG+AGG | + | chr3_1:28689162-28689181 | None:intergenic | 55.0% | |
GGGGCAGATCGCAATAAAGG+TGG | + | chr3_1:28689438-28689457 | None:intergenic | 55.0% | |
!! | TGTTGGCTTTGAGAGGGTGG+AGG | - | chr3_1:28689491-28689510 | Msa0355050:intron | 55.0% |
GCACTCCTCACCTTACAAGC+TGG | - | chr3_1:28689513-28689532 | Msa0355050:intron | 55.0% | |
ACAATGCCGCCGTACATGTG+AGG | - | chr3_1:28689804-28689823 | Msa0355050:intron | 55.0% | |
GAGGCTTCCAAAGATGCAGG+TGG | + | chr3_1:28689980-28689999 | None:intergenic | 55.0% | |
TGCGAGGCTTCCAAAGATGC+AGG | + | chr3_1:28689983-28690002 | None:intergenic | 55.0% | |
CAGCATGATTCTGCAGGTCG+TGG | + | chr3_1:28690270-28690289 | None:intergenic | 55.0% | |
CACGACCTGCAGAATCATGC+TGG | - | chr3_1:28690268-28690287 | Msa0355050:intron | 55.0% | |
GACATCATGCCGGTGGTATG+AGG | + | chr3_1:28690337-28690356 | None:intergenic | 55.0% | |
GATGGCCATGACTGACCTGT+AGG | + | chr3_1:28690406-28690425 | None:intergenic | 55.0% | |
GAACTTGAGCCTCCACAGGA+TGG | + | chr3_1:28690424-28690443 | None:intergenic | 55.0% | |
GGATGAACTTGAGCCTCCAC+AGG | + | chr3_1:28690428-28690447 | None:intergenic | 55.0% | |
CATTGGACATTGTCGGCAGG+AGG | + | chr3_1:28690936-28690955 | None:intergenic | 55.0% | |
CTGCATTGGACATTGTCGGC+AGG | + | chr3_1:28690939-28690958 | None:intergenic | 55.0% | |
GCCGATGGCAGAAACATGGC+AGG | + | chr3_1:28685761-28685780 | None:intergenic | 60.0% | |
TGCGGCCGATGGCAGAAACA+TGG | + | chr3_1:28685765-28685784 | None:intergenic | 60.0% | |
GGACGCACATGTGGAGAAGG+AGG | - | chr3_1:28686416-28686435 | Msa0355050:CDS | 60.0% | |
! | CATGTGGAGAAGGAGGCGCA+TGG | - | chr3_1:28686423-28686442 | Msa0355050:CDS | 60.0% |
! | GGTGTCATCGGAGAACAGGG+TGG | + | chr3_1:28687915-28687934 | None:intergenic | 60.0% |
TGCCGCCGTACATGTGAGGA+TGG | - | chr3_1:28689808-28689827 | Msa0355050:intron | 60.0% | |
GTGGTATGAGGACCGCCTTG+TGG | + | chr3_1:28690325-28690344 | None:intergenic | 60.0% | |
CAAGGCGGTCCTCATACCAC+CGG | - | chr3_1:28690325-28690344 | Msa0355050:intron | 60.0% | |
GGTCAGTCATGGCCATCCTG+TGG | - | chr3_1:28690409-28690428 | Msa0355050:intron | 60.0% | |
CAGTCATGGCCATCCTGTGG+AGG | - | chr3_1:28690412-28690431 | Msa0355050:intron | 60.0% | |
GAAAGACGGCCTCGTGTGAG+AGG | - | chr3_1:28690565-28690584 | Msa0355050:intron | 60.0% | |
! | TGTCGGCAGGAGGTACACAG+AGG | + | chr3_1:28690926-28690945 | None:intergenic | 60.0% |
GGGGTAGGACATCATGCCGG+TGG | + | chr3_1:28690344-28690363 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_1 | gene | 28685027 | 28691099 | 28685027 | ID=Msa0355050;Name=Msa0355050 |
chr3_1 | mRNA | 28685027 | 28691099 | 28685027 | ID=Msa0355050-mRNA-1;Parent=Msa0355050;Name=Msa0355050-mRNA-1;_AED=0.27;_eAED=0.27;_QI=45|1|1|1|1|1|6|382|580 |
chr3_1 | exon | 28685027 | 28686445 | 28685027 | ID=Msa0355050-mRNA-1:exon:5989;Parent=Msa0355050-mRNA-1 |
chr3_1 | exon | 28687269 | 28687362 | 28687269 | ID=Msa0355050-mRNA-1:exon:5988;Parent=Msa0355050-mRNA-1 |
chr3_1 | exon | 28688129 | 28688296 | 28688129 | ID=Msa0355050-mRNA-1:exon:5987;Parent=Msa0355050-mRNA-1 |
chr3_1 | exon | 28689682 | 28689815 | 28689682 | ID=Msa0355050-mRNA-1:exon:5986;Parent=Msa0355050-mRNA-1 |
chr3_1 | exon | 28689923 | 28690084 | 28689923 | ID=Msa0355050-mRNA-1:exon:5985;Parent=Msa0355050-mRNA-1 |
chr3_1 | exon | 28690907 | 28691099 | 28690907 | ID=Msa0355050-mRNA-1:exon:5984;Parent=Msa0355050-mRNA-1 |
chr3_1 | five_prime_UTR | 28691055 | 28691099 | 28691055 | ID=Msa0355050-mRNA-1:five_prime_utr;Parent=Msa0355050-mRNA-1 |
chr3_1 | CDS | 28690907 | 28691054 | 28690907 | ID=Msa0355050-mRNA-1:cds;Parent=Msa0355050-mRNA-1 |
chr3_1 | CDS | 28689923 | 28690084 | 28689923 | ID=Msa0355050-mRNA-1:cds;Parent=Msa0355050-mRNA-1 |
chr3_1 | CDS | 28689682 | 28689815 | 28689682 | ID=Msa0355050-mRNA-1:cds;Parent=Msa0355050-mRNA-1 |
chr3_1 | CDS | 28688129 | 28688296 | 28688129 | ID=Msa0355050-mRNA-1:cds;Parent=Msa0355050-mRNA-1 |
chr3_1 | CDS | 28687269 | 28687362 | 28687269 | ID=Msa0355050-mRNA-1:cds;Parent=Msa0355050-mRNA-1 |
chr3_1 | CDS | 28685409 | 28686445 | 28685409 | ID=Msa0355050-mRNA-1:cds;Parent=Msa0355050-mRNA-1 |
chr3_1 | three_prime_UTR | 28685027 | 28685408 | 28685027 | ID=Msa0355050-mRNA-1:three_prime_utr;Parent=Msa0355050-mRNA-1 |
Gene Sequence |
Protein sequence |