AlfalfaGEDB | Msa0355050

M. sativa cultivar zhongmu-4 / Msa0355050

KEGG: K12127
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006725 GO:0006807 GO:0007623 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009892 GO:0009987 GO:0010031 GO:0010467 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031326 GO:0032501 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048511 GO:0048519 GO:0050789 GO:0050794 GO:0050879 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00072.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0355050	XP_013459414.1	92.308	572	36	4	1	569	1	567	0.0	1078

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0355050	sp\|Q9LKL2\|APRR1_ARATH	48.371	614	240	15	6	562	1	594	9.21e-169	496

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0355050	A0A072V5J5	92.308	572	36	4	1	569	1	567	0.0	1078

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0355050	Msa0686210	0.800294	1.542199e-48	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0355050	MtrunA17_Chr3g0091641	92.308	572	36	4	1	569	1	567	0.0	1078
Msa0355050	MtrunA17_Chr4g0061021	65.104	576	146	7	10	560	19	564	0.0	730
Msa0355050	MtrunA17_Chr3g0127941	30.795	302	171	8	18	315	50	317	6.32e-31	128
Msa0355050	MtrunA17_Chr3g0127941	68.889	45	14	0	501	545	630	674	1.13e-12	70.9
Msa0355050	MtrunA17_Chr4g0030271	43.750	128	72	0	18	145	83	210	1.22e-28	121
Msa0355050	MtrunA17_Chr4g0030271	68.750	48	15	0	497	544	717	764	3.04e-15	79.3
Msa0355050	MtrunA17_Chr8g0345901	35.838	173	94	1	18	190	30	185	1.13e-27	117
Msa0355050	MtrunA17_Chr8g0345901	63.265	49	18	0	500	548	583	631	5.84e-12	68.6
Msa0355050	MtrunA17_Chr7g0276361	42.188	128	74	0	18	145	8	135	3.78e-27	115
Msa0355050	MtrunA17_Chr7g0276361	60.000	50	20	0	497	546	537	586	2.79e-13	72.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0355050	AT5G61380.1	48.371	614	240	15	6	562	1	594	9.36e-170	496
Msa0355050	AT2G46790.3	42.188	128	74	0	18	145	31	158	1.08e-31	128
Msa0355050	AT2G46790.1	41.538	130	76	0	16	145	29	158	1.53e-31	128
Msa0355050	AT2G46790.1	69.565	46	14	0	500	545	416	461	2.83e-14	75.9
Msa0355050	AT5G24470.1	45.113	133	73	0	18	150	44	176	4.91e-31	127
Msa0355050	AT5G24470.1	55.172	58	26	0	487	544	495	552	4.22e-13	72.4
Msa0355050	AT5G60100.7	45.082	122	67	0	24	145	64	185	3.03e-28	117
Msa0355050	AT5G60100.6	45.082	122	67	0	24	145	64	185	3.03e-28	117
Msa0355050	AT5G60100.4	45.082	122	67	0	24	145	64	185	3.03e-28	117
Msa0355050	AT5G60100.5	45.082	122	67	0	24	145	64	185	6.05e-28	117

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Find 147 sgRNAs with CRISPR-Local

Find 425 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCCAGACGGATCATTTG+AGG	0.518079	3_1:+28685223	None:intergenic
AACTAAATCTTACTTATAAT+AGG	0.364003	3_1:+28689910	None:intergenic
AACTGTTGCCTCGCATTAAT+TGG	0.221271	3_1:-28685324	Msa0355050:three_prime_UTR
AACTTCCATCCTCACATGTA+CGG	0.540871	3_1:+28686291	None:intergenic
AAGAAGAGCGAACTAAGGAT+TGG	0.487567	3_1:-28686403	Msa0355050:CDS
AAGAGTTCATTTGTGCGTAA+AGG	0.468426	3_1:+28689719	None:intergenic
AAGCCTCATATAGCAAGTGA+TGG	0.635756	3_1:+28685301	None:intergenic
AATAGAGACAGATCCTTGAC+AGG	0.539660	3_1:+28685363	None:intergenic
AATGAAGCATGTGCTCAACA+AGG	0.588403	3_1:-28686265	Msa0355050:CDS
AATGGTAAGAAGATTGGTGA+TGG	0.578357	3_1:-28691005	Msa0355050:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGTGTAAAAACTTCTTGAG+AGG	+	chr3_1:28685178-28685197	None:intergenic	30.0%
TGTTAGCCATATTTGTATGT+TGG	-	chr3_1:28685386-28685405	Msa0355050:three_prime_UTR	30.0%
CACATCACATATACAACATA+TGG	+	chr3_1:28685598-28685617	None:intergenic	30.0%
TTAATAGGTGTTTACACCTA+TGG	+	chr3_1:28685737-28685756	None:intergenic	30.0%
AAAGCAAAATCTTAGACACA+GGG	+	chr3_1:28685850-28685869	None:intergenic	30.0%
AAAAGCAAAATCTTAGACAC+AGG	+	chr3_1:28685851-28685870	None:intergenic	30.0%
GACATTCAAAACATTGATGA+GGG	+	chr3_1:28686278-28686297	None:intergenic	30.0%
AGACATTCAAAACATTGATG+AGG	+	chr3_1:28686279-28686298	None:intergenic	30.0%
AAGTTGACAGAACAAAACAA+AGG	+	chr3_1:28686600-28686619	None:intergenic	30.0%
TGTAAATACAATGGTTGTGA+TGG	+	chr3_1:28686626-28686645	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	28685027	28691099	28685027	ID=Msa0355050;Name=Msa0355050
chr3_1	mRNA	28685027	28691099	28685027	ID=Msa0355050-mRNA-1;Parent=Msa0355050;Name=Msa0355050-mRNA-1;_AED=0.27;_eAED=0.27;_QI=45\|1\|1\|1\|1\|1\|6\|382\|580
chr3_1	exon	28685027	28686445	28685027	ID=Msa0355050-mRNA-1:exon:5989;Parent=Msa0355050-mRNA-1
chr3_1	exon	28687269	28687362	28687269	ID=Msa0355050-mRNA-1:exon:5988;Parent=Msa0355050-mRNA-1
chr3_1	exon	28688129	28688296	28688129	ID=Msa0355050-mRNA-1:exon:5987;Parent=Msa0355050-mRNA-1
chr3_1	exon	28689682	28689815	28689682	ID=Msa0355050-mRNA-1:exon:5986;Parent=Msa0355050-mRNA-1
chr3_1	exon	28689923	28690084	28689923	ID=Msa0355050-mRNA-1:exon:5985;Parent=Msa0355050-mRNA-1
chr3_1	exon	28690907	28691099	28690907	ID=Msa0355050-mRNA-1:exon:5984;Parent=Msa0355050-mRNA-1
chr3_1	five_prime_UTR	28691055	28691099	28691055	ID=Msa0355050-mRNA-1:five_prime_utr;Parent=Msa0355050-mRNA-1
chr3_1	CDS	28690907	28691054	28690907	ID=Msa0355050-mRNA-1:cds;Parent=Msa0355050-mRNA-1
chr3_1	CDS	28689923	28690084	28689923	ID=Msa0355050-mRNA-1:cds;Parent=Msa0355050-mRNA-1
chr3_1	CDS	28689682	28689815	28689682	ID=Msa0355050-mRNA-1:cds;Parent=Msa0355050-mRNA-1
chr3_1	CDS	28688129	28688296	28688129	ID=Msa0355050-mRNA-1:cds;Parent=Msa0355050-mRNA-1
chr3_1	CDS	28687269	28687362	28687269	ID=Msa0355050-mRNA-1:cds;Parent=Msa0355050-mRNA-1
chr3_1	CDS	28685409	28686445	28685409	ID=Msa0355050-mRNA-1:cds;Parent=Msa0355050-mRNA-1
chr3_1	three_prime_UTR	28685027	28685408	28685027	ID=Msa0355050-mRNA-1:three_prime_utr;Parent=Msa0355050-mRNA-1

Gene Sequence

>Msa0355050

ATGGAGAGTGAAGGGTTTGATTTGAATAATGGTAAGAAGATTGGTGATGGTTTTGTTGATAGAAGTAAAGTGAGGATTTTGCTTTGTGATACTGATTCCAATACCTCTCAAGAAGTTTTTACACTTCTCTTGAGATGTTGTTATCAAGTTATTTCAGTGAAGTCAGCAAGACAAGTAATTGATGCACTGAATGCAGAGAAGGAAACTATAGATCTCATACTGGCTGAAGTTGGCCTTCCGAAGAAGAAGGGCATGAAGATGTTGAAGTACATAGCCCGAGACAAAGAATTGCGCAGAATTCCTATTATAATGATGTCTGCACAAGATGAGGTGTCTGTTGTTGTGAAGTGCTTGAGGCTCGGAGCAGCAGACTATCTAGTAAAGCCTTTACGCACAAATGAACTCTTAAATTTGTGGACGCACATGTGGAGAAGGAGGCGCATGCTTGGACTTGCAGAGAAGAACATGTTAAATTACGACTTTGATCTGGTAGTATCAGAGCCTAGCGATAACAATACAAACAGTACCACCCTGTTCTCCGATGACACCGATGATAACTCGAAGAGAAGCACTATTCAAGAGACAGGAATATCAGTCCAACAAGAGCAAGAGTCTACTATTGCAAATGCTGATGCTGTTGAGGAACCTCCAGATGATCATGCATCAGAATGTCAGCCTGAAGTCCATGGAGTAAATGATCAGCCAGCTTCCTTTTCATTTGCTCCAAAGAAGAGCGAACTAAGGATTGGGGTTGGGGAGTCATCAGCTTTCTTCACATATGTTAAAGCATCAATGCTAAAAAGAAACCTTGAAGGGATTGTTCATGCTGACAATGCCGCCGTACATGTGAGGATGGAAGTTTTGAATGAAGCATGTGCTCAACAAGGGGTTAGTGATCTCGAAGTATGCAAAAATGGAGAAACTTGCGATAGTCAATCGCAAGATGACTTCCCCAGCAGCAATAGTATACATGGTTCTTTATCTATTGAGAGATCTTGTACTCCACCTGCATCTTTGGAAGCCTCGCAGCAAAACCGTTACGAAGAAGAAAATTTGCATCACAACAGTCTGATACATCCAAGAAATGGGACCTATTGTTCTGAGCTCGAAATGTCTAACATGCCTGCACAAAATTTGCATCACAACAGTCTGATGCATCCAAGAAATGGGGTTCATTGTCCTGAGCTTGAAAGATCTAACATGACTGCACAACATGCTTATCCATATTATATGTCATCGGGAGTTAATCATGTTATGATGCCTTCATCGGCGCAAATGTATCAAAAGAATGTCCACGACCTGCAGAATCATGCTGGTACATCTATGATTGCTCACTACAATCATGTTCCACAAGGCGGTCCTCATACCACCGGCATGATGTCCTACCCCTATTACCCAATGAATATGTGCTTACAACCAGGTCAGATTCCTACAGGTCAGTCATGGCCATCCTGTGGAGGCTCAAGTTCATCCGAAGCAAAATTAAGTAAAGTTGACAGGAGAGAAGCAGCATTGATTAAATTCAGACAGAAAAAGAAAGAGCGCTGTTTTGATAAGAAAATTAGGTATGTCAATCGGAAACAACTTGCTGAAAGACGGCCTCGTGTGAGAGGACAGTTTGTCAGTAAGTTGAATGGTGTTGATGTGGATCTTAATGGACAGCCTCCTTCGATAGAATATGATGAAAATGAAGATGATCAGGGGAGCTGGAGATTACTCTCCCAATGTCGTCGAAATGACTAA

Protein sequence

>Msa0355050

MESEGFDLNNGKKIGDGFVDRSKVRILLCDTDSNTSQEVFTLLLRCCYQVISVKSARQVIDALNAEKETIDLILAEVGLPKKKGMKMLKYIARDKELRRIPIIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLAEKNMLNYDFDLVVSEPSDNNTNSTTLFSDDTDDNSKRSTIQETGISVQQEQESTIANADAVEEPPDDHASECQPEVHGVNDQPASFSFAPKKSELRIGVGESSAFFTYVKASMLKRNLEGIVHADNAAVHVRMEVLNEACAQQGVSDLEVCKNGETCDSQSQDDFPSSNSIHGSLSIERSCTPPASLEASQQNRYEEENLHHNSLIHPRNGTYCSELEMSNMPAQNLHHNSLMHPRNGVHCPELERSNMTAQHAYPYYMSSGVNHVMMPSSAQMYQKNVHDLQNHAGTSMIAHYNHVPQGGPHTTGMMSYPYYPMNMCLQPGQIPTGQSWPSCGGSSSSEAKLSKVDRREAALIKFRQKKKERCFDKKIRYVNRKQLAERRPRVRGQFVSKLNGVDVDLNGQPPSIEYDENEDDQGSWRLLSQCRRND*