Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0355330 | KEH33239.1 | 86.928 | 153 | 15 | 2 | 1 | 153 | 8 | 155 | 9.85e-89 | 265 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0355330 | sp|Q9FKI4|NAA10_ARATH | 43.871 | 155 | 76 | 4 | 6 | 150 | 2 | 155 | 6.01e-29 | 107 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0355330 | A0A072UTR7 | 86.928 | 153 | 15 | 2 | 1 | 153 | 8 | 155 | 4.71e-89 | 265 |
Gene ID | Type | Classification |
---|---|---|
Msa0355330 | TR | GNAT |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0355330 | Msa0357620 | 0.971657 | 1.649422e-133 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0355330 | MtrunA17_Chr3g0088851 | 88.660 | 97 | 9 | 1 | 1 | 97 | 1 | 95 | 2.68e-58 | 177 |
Msa0355330 | MtrunA17_Chr3g0090311 | 46.795 | 156 | 72 | 4 | 6 | 151 | 2 | 156 | 3.05e-34 | 118 |
Msa0355330 | MtrunA17_Chr3g0098461 | 38.217 | 157 | 86 | 6 | 1 | 151 | 1 | 152 | 2.48e-19 | 79.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0355330 | AT5G13780.1 | 43.871 | 155 | 76 | 4 | 6 | 150 | 2 | 155 | 6.11e-30 | 107 |
Msa0355330 | AT1G03150.1 | 28.070 | 114 | 78 | 3 | 35 | 146 | 39 | 150 | 1.76e-11 | 59.3 |
Find 73 sgRNAs with CRISPR-Local
Find 237 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAACCCAAAGTCCATTTATT+TGG | 0.170198 | 3_1:-29302297 | None:intergenic |
TTCCACAATGTGCCAATATT+CGG | 0.287513 | 3_1:+29301879 | None:intergenic |
AGGATGTCTTATGAACAATT+TGG | 0.318747 | 3_1:-29299532 | Msa0355330:three_prime_UTR |
GACAGAGAGAACCAAATAAA+TGG | 0.319346 | 3_1:+29302286 | None:intergenic |
CTCGTTACTCGCCCGAATAT+TGG | 0.335099 | 3_1:-29301891 | Msa0355330:CDS |
ATGCATGCTTCAAAATATTA+AGG | 0.337012 | 3_1:+29299499 | None:intergenic |
TGCATAAGAGTTGCAACATT+TGG | 0.337938 | 3_1:-29301945 | Msa0355330:CDS |
CTGAGTAGTGAGAGGAAATA+TGG | 0.344451 | 3_1:-29299462 | Msa0355330:three_prime_UTR |
GAGCTGCAGAGTTGCTCTTC+CGG | 0.347682 | 3_1:+29300990 | None:intergenic |
TCCACAATGTGCCAATATTC+GGG | 0.349965 | 3_1:+29301880 | None:intergenic |
GAACCAAATAAATGGACTTT+GGG | 0.357029 | 3_1:+29302294 | None:intergenic |
CGCGTTAATCTTCAGTTTCA+AGG | 0.367444 | 3_1:-29302167 | Msa0355330:five_prime_UTR |
TCTTGGTTTGTTTCAAAAGA+TGG | 0.379062 | 3_1:-29300969 | Msa0355330:CDS |
AGAACCAAATAAATGGACTT+TGG | 0.392524 | 3_1:+29302293 | None:intergenic |
TGCAACATTTGGAGACGTAT+TGG | 0.394327 | 3_1:-29301934 | Msa0355330:CDS |
GATAGGTATGGTGAACGAAT+AGG | 0.421395 | 3_1:+29301751 | None:intergenic |
TTCTTCAGCCCGTCAAGATT+AGG | 0.430168 | 3_1:-29299777 | Msa0355330:intron |
CTCCTCATCATCAAAATACT+TGG | 0.430558 | 3_1:+29300922 | None:intergenic |
ATAGGTATGGTGAACGAATA+GGG | 0.433258 | 3_1:+29301752 | None:intergenic |
CTCTGAAGGTGAAGAGGAAG+AGG | 0.447607 | 3_1:-29301802 | Msa0355330:CDS |
CTTGGTTTGTTTCAAAAGAT+GGG | 0.449922 | 3_1:-29300968 | Msa0355330:CDS |
GTGGATCTGCTCCGAGCAAT+GGG | 0.452575 | 3_1:+29302213 | None:intergenic |
CGCCCAAAACACCATGGAAA+AGG | 0.453353 | 3_1:-29301694 | Msa0355330:intron |
AAGAGCAACTCTGCAGCTCT+TGG | 0.462439 | 3_1:-29300986 | Msa0355330:CDS |
GACAAAACCTTCTCTGTGAG+AGG | 0.494687 | 3_1:+29302235 | None:intergenic |
AAGACGTTTCAGTGCATGTC+CGG | 0.496711 | 3_1:-29301009 | Msa0355330:CDS |
TTCTCTGTGAGAGGGTTTCG+CGG | 0.497676 | 3_1:+29302244 | None:intergenic |
TCCTTAACACCTAATCTTGA+CGG | 0.498838 | 3_1:+29299768 | None:intergenic |
CATTTGGAGACGTATTGGAT+TGG | 0.499964 | 3_1:-29301929 | Msa0355330:CDS |
GAAGGTCTTCCTCCTCCTGC+GGG | 0.507846 | 3_1:+29299797 | None:intergenic |
GTTGCTTACCTCCTCTCTGA+AGG | 0.508220 | 3_1:-29301816 | Msa0355330:CDS |
GATTTAACATGTAGTACTGC+AGG | 0.520464 | 3_1:-29299616 | Msa0355330:intron |
ATGGATTCTCCCGCAGGAGG+AGG | 0.526333 | 3_1:-29299806 | Msa0355330:three_prime_UTR |
AAGGTGAAGAGGAAGAGGAA+GGG | 0.530803 | 3_1:-29301797 | Msa0355330:CDS |
CTAACCATGAAACAGTTGTA+AGG | 0.531736 | 3_1:-29301990 | Msa0355330:intron |
CGACCGTACGGCCTCCGACA+CGG | 0.536845 | 3_1:+29302191 | None:intergenic |
AGGAACAATGTCGTCAAAGA+AGG | 0.539052 | 3_1:-29301970 | Msa0355330:exon |
GGTGGATCTGCTCCGAGCAA+TGG | 0.539383 | 3_1:+29302212 | None:intergenic |
TAATCTTGACGGGCTGAAGA+AGG | 0.539736 | 3_1:+29299779 | None:intergenic |
GCGTTAATCTTCAGTTTCAA+GGG | 0.546532 | 3_1:-29302166 | Msa0355330:intron |
GTCTTGAGGAAGATACTCAA+GGG | 0.554037 | 3_1:-29300890 | Msa0355330:CDS |
CCTTAACACCTAATCTTGAC+GGG | 0.555318 | 3_1:+29299769 | None:intergenic |
TCAAACATGGATTCTCCCGC+AGG | 0.555440 | 3_1:-29299812 | Msa0355330:three_prime_UTR |
CCACCGTGTCGGAGGCCGTA+CGG | 0.555632 | 3_1:-29302194 | Msa0355330:five_prime_UTR |
GAAGGTGAAGAGGAAGAGGA+AGG | 0.556577 | 3_1:-29301798 | Msa0355330:CDS |
AGATTAACGCGGCGACCGTA+CGG | 0.559159 | 3_1:+29302179 | None:intergenic |
TGTCTTGAGGAAGATACTCA+AGG | 0.562517 | 3_1:-29300891 | Msa0355330:CDS |
CCTCCTCTCTGAAGGTGAAG+AGG | 0.564442 | 3_1:-29301808 | Msa0355330:CDS |
GCCCGAATATTGGCACATTG+TGG | 0.568169 | 3_1:-29301881 | Msa0355330:CDS |
GAGCAGATCCACCGTGTCGG+AGG | 0.590065 | 3_1:-29302202 | Msa0355330:five_prime_UTR |
ACAAAACCTTCTCTGTGAGA+GGG | 0.593528 | 3_1:+29302236 | None:intergenic |
AGAAGGTCTTCCTCCTCCTG+CGG | 0.599858 | 3_1:+29299796 | None:intergenic |
TTACACACTTCACGAGGTGA+AGG | 0.607853 | 3_1:-29300945 | Msa0355330:CDS |
CCTCTTCACCTTCAGAGAGG+AGG | 0.614706 | 3_1:+29301808 | None:intergenic |
AGGAGGACGCTATTGTCTTG+AGG | 0.615172 | 3_1:-29300904 | Msa0355330:CDS |
CACCGCCGCCCAAAACACCA+TGG | 0.620119 | 3_1:-29301700 | Msa0355330:CDS |
ATAGGGAGGCGATACTAAAG+TGG | 0.620673 | 3_1:+29301769 | None:intergenic |
CACCATACCTATCGTAAACG+TGG | 0.631082 | 3_1:-29301741 | Msa0355330:CDS |
GAGTGGGTCTCACAGTTAGG+TGG | 0.634645 | 3_1:+29300856 | None:intergenic |
CTTCCTCTTCACCTTCAGAG+AGG | 0.638002 | 3_1:+29301805 | None:intergenic |
AACATGGATTCTCCCGCAGG+AGG | 0.639259 | 3_1:-29299809 | Msa0355330:three_prime_UTR |
GAAGAAGCTTATTCATGTCG+CGG | 0.645766 | 3_1:-29301859 | Msa0355330:CDS |
GCGAAACCCTCTCACAGAGA+AGG | 0.648548 | 3_1:-29302242 | Msa0355330:five_prime_UTR |
AGTGAGTGCTGAGTAGTGAG+AGG | 0.650520 | 3_1:-29299470 | Msa0355330:three_prime_UTR |
TACCACGTTTACGATAGGTA+TGG | 0.651983 | 3_1:+29301739 | None:intergenic |
TCGGAGCAGATCCACCGTGT+CGG | 0.652706 | 3_1:-29302205 | Msa0355330:five_prime_UTR |
AGCGATACCACGTTTACGAT+AGG | 0.681782 | 3_1:+29301734 | None:intergenic |
TCTTGAGGAAGATACTCAAG+GGG | 0.688967 | 3_1:-29300889 | Msa0355330:CDS |
CATGTCGCGGACAATTGCAG+CGG | 0.697708 | 3_1:-29301846 | Msa0355330:CDS |
GATGGGTTACACACTTCACG+AGG | 0.713948 | 3_1:-29300951 | Msa0355330:CDS |
CTTGAAACTGAAGATTAACG+CGG | 0.736003 | 3_1:+29302168 | None:intergenic |
CCGTACGGCCTCCGACACGG+TGG | 0.742152 | 3_1:+29302194 | None:intergenic |
GGTATGGTGAACGAATAGGG+AGG | 0.789435 | 3_1:+29301755 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATAAACATAGAAAGAAATTA+GGG | + | chr3_1:29299701-29299720 | None:intergenic | 15.0% |
!!! | TCTGTTATAATTTTGTTTTT+TGG | - | chr3_1:29300103-29300122 | Msa0355330:intron | 15.0% |
!!! | ATAATTTTGTTTTTTGGATT+AGG | - | chr3_1:29300109-29300128 | Msa0355330:intron | 15.0% |
!! | GAAAATAATTAAAACTTTGA+TGG | - | chr3_1:29300955-29300974 | Msa0355330:CDS | 15.0% |
!! | AAAGGTTTCAATAGAAATTT+GGG | + | chr3_1:29299642-29299661 | None:intergenic | 20.0% |
!! | TAGGGTTTCAATTAAAATTT+GGG | + | chr3_1:29299683-29299702 | None:intergenic | 20.0% |
!! | TTAGGGTTTCAATTAAAATT+TGG | + | chr3_1:29299684-29299703 | None:intergenic | 20.0% |
!! | CATAAACATAGAAAGAAATT+AGG | + | chr3_1:29299702-29299721 | None:intergenic | 20.0% |
!!! | TTCTAAAGATTGTTATGTTT+TGG | + | chr3_1:29299742-29299761 | None:intergenic | 20.0% |
!!! | TTTCTTCTTGTTAATGATTT+TGG | - | chr3_1:29300483-29300502 | Msa0355330:intron | 20.0% |
!!! | TTGATAGTCACTAATATTTA+GGG | - | chr3_1:29301054-29301073 | Msa0355330:intron | 20.0% |
!!! | ACTTTGTATATTTTGTAGTA+TGG | - | chr3_1:29302022-29302041 | Msa0355330:intron | 20.0% |
!! | ATTTGATATAACCATAGATT+AGG | - | chr3_1:29302108-29302127 | Msa0355330:intron | 20.0% |
! | CAAAGGTTTCAATAGAAATT+TGG | + | chr3_1:29299643-29299662 | None:intergenic | 25.0% |
! | AGGGTTTCAATTAAAATTTG+GGG | + | chr3_1:29299682-29299701 | None:intergenic | 25.0% |
!! | ATGGAGTTTGTTTAATGTTT+AGG | - | chr3_1:29300189-29300208 | Msa0355330:intron | 25.0% |
! | GAAAACCAAAAGAAAAATCT+CGG | + | chr3_1:29300567-29300586 | None:intergenic | 25.0% |
!!! | TTTTCTTGTTTCCTAATCTT+GGG | - | chr3_1:29300582-29300601 | Msa0355330:intron | 25.0% |
! | ACAACCAAAAACATCAAAAA+AGG | + | chr3_1:29300662-29300681 | None:intergenic | 25.0% |
!! | ACATTGTAACAGACTTTTAA+TGG | + | chr3_1:29300700-29300719 | None:intergenic | 25.0% |
! | TCTAGAAAATGGAAAAAGAT+GGG | + | chr3_1:29300926-29300945 | None:intergenic | 25.0% |
!! | TTCTAGAAAATGGAAAAAGA+TGG | + | chr3_1:29300927-29300946 | None:intergenic | 25.0% |
!! | TCACAATACATTCTAGAAAA+TGG | + | chr3_1:29300937-29300956 | None:intergenic | 25.0% |
!! | ATAATTAAAACTTTGATGGC+TGG | - | chr3_1:29300959-29300978 | Msa0355330:CDS | 25.0% |
! | CTGGTTTAATATTTACATGA+TGG | - | chr3_1:29300978-29300997 | Msa0355330:CDS | 25.0% |
!! | CTTGATAGTCACTAATATTT+AGG | - | chr3_1:29301053-29301072 | Msa0355330:intron | 25.0% |
!!! | TGTTGCTTATTGATTTCAAA+TGG | - | chr3_1:29301355-29301374 | Msa0355330:intron | 25.0% |
! | ATGGAGGTAAAAAAAATGAA+TGG | - | chr3_1:29301374-29301393 | Msa0355330:intron | 25.0% |
! | TAACATCATGTAAAGTAACA+CGG | + | chr3_1:29301400-29301419 | None:intergenic | 25.0% |
! | ATGTTAACTACAACCTTATA+AGG | - | chr3_1:29301414-29301433 | Msa0355330:intron | 25.0% |
! | AAATATACTGTTTGAGTATG+TGG | + | chr3_1:29301486-29301505 | None:intergenic | 25.0% |
!!! | TTTGTCTTTTTCAAAGATCT+AGG | - | chr3_1:29301534-29301553 | Msa0355330:intron | 25.0% |
! | AAAGCATAAAGGATTAAAGT+TGG | + | chr3_1:29301605-29301624 | None:intergenic | 25.0% |
! | TTAATCCTTTATGCTTTCTT+CGG | - | chr3_1:29301608-29301627 | Msa0355330:intron | 25.0% |
! | CAATCAATTAAGAGAACAAA+TGG | + | chr3_1:29301678-29301697 | None:intergenic | 25.0% |
! | CATTTGTTCTCTTAATTGAT+TGG | - | chr3_1:29301676-29301695 | Msa0355330:intron | 25.0% |
! | GAAAATATGCAAGTAGTAAA+AGG | + | chr3_1:29301816-29301835 | None:intergenic | 25.0% |
! | TAATCGCAATTCATTAAACA+AGG | + | chr3_1:29301841-29301860 | None:intergenic | 25.0% |
!!! | AGTATGGTATCTTTTAAAGT+AGG | - | chr3_1:29302038-29302057 | Msa0355330:intron | 25.0% |
!!! | GTATGGTATCTTTTAAAGTA+GGG | - | chr3_1:29302039-29302058 | Msa0355330:intron | 25.0% |
!!! | TATGGTATCTTTTAAAGTAG+GGG | - | chr3_1:29302040-29302059 | Msa0355330:intron | 25.0% |
! | ATGCATGCTTCAAAATATTA+AGG | + | chr3_1:29302258-29302277 | None:intergenic | 25.0% |
! | AGAACCAAATAAATGGACTT+TGG | + | chr3_1:29299464-29299483 | None:intergenic | 30.0% |
! | AAATTTGGGATTTGAGAGAA+AGG | + | chr3_1:29299628-29299647 | None:intergenic | 30.0% |
GTTTATGATTTCTCACTCAA+AGG | + | chr3_1:29299660-29299679 | None:intergenic | 30.0% | |
TTACAACTGTTTCATGGTTA+GGG | + | chr3_1:29299765-29299784 | None:intergenic | 30.0% | |
TCCATACATAACCAGTTAAA+AGG | + | chr3_1:29300174-29300193 | None:intergenic | 30.0% | |
TAATGTTTAGGTATGAAGCT+TGG | - | chr3_1:29300201-29300220 | Msa0355330:intron | 30.0% | |
AGAAAACAGAAAATCATCAC+GGG | + | chr3_1:29300312-29300331 | None:intergenic | 30.0% | |
CAGAAAACAGAAAATCATCA+CGG | + | chr3_1:29300313-29300332 | None:intergenic | 30.0% | |
! | CTTCTTGTTAATGATTTTGG+TGG | - | chr3_1:29300486-29300505 | Msa0355330:intron | 30.0% |
!! | TTGTTAATGATTTTGGTGGT+TGG | - | chr3_1:29300490-29300509 | Msa0355330:intron | 30.0% |
!! | GTTTTCTTGTTTCCTAATCT+TGG | - | chr3_1:29300581-29300600 | Msa0355330:intron | 30.0% |
! | TTTCTTGTTTCCTAATCTTG+GGG | - | chr3_1:29300583-29300602 | Msa0355330:intron | 30.0% |
!!! | CAGACCTTTTTTGATGTTTT+TGG | - | chr3_1:29300655-29300674 | Msa0355330:intron | 30.0% |
ACAATGTGTAATTTGACTGA+AGG | - | chr3_1:29300713-29300732 | Msa0355330:intron | 30.0% | |
!! | TCTTGGTTTGTTTCAAAAGA+TGG | - | chr3_1:29300785-29300804 | Msa0355330:intron | 30.0% |
!! | CTTGGTTTGTTTCAAAAGAT+GGG | - | chr3_1:29300786-29300805 | Msa0355330:intron | 30.0% |
TAGAAAATGGAAAAAGATGG+GGG | + | chr3_1:29300924-29300943 | None:intergenic | 30.0% | |
CTAGAAAATGGAAAAAGATG+GGG | + | chr3_1:29300925-29300944 | None:intergenic | 30.0% | |
! | ATTTGATCGCTATCTTTTTG+TGG | - | chr3_1:29301091-29301110 | Msa0355330:intron | 30.0% |
TTATCCAAGGATGAAAAAGT+CGG | + | chr3_1:29301139-29301158 | None:intergenic | 30.0% | |
! | TGTAAAGAGCATATTATCCA+AGG | + | chr3_1:29301152-29301171 | None:intergenic | 30.0% |
TGGATAATATGCTCTTTACA+TGG | - | chr3_1:29301152-29301171 | Msa0355330:intron | 30.0% | |
!! | TTTCTTGAGTGTAGTTCTAA+TGG | - | chr3_1:29301265-29301284 | Msa0355330:intron | 30.0% |
!! | TTCTTGAGTGTAGTTCTAAT+GGG | - | chr3_1:29301266-29301285 | Msa0355330:intron | 30.0% |
!! | TGCTTATTGATTTCAAATGG+AGG | - | chr3_1:29301358-29301377 | Msa0355330:intron | 30.0% |
TCTAAAAAGTCGTCCTTATA+AGG | + | chr3_1:29301430-29301449 | None:intergenic | 30.0% | |
CTTATTGAGGATTCAGATTA+GGG | - | chr3_1:29301723-29301742 | Msa0355330:CDS | 30.0% | |
TGCTGAAGTCAATTAAATCA+TGG | - | chr3_1:29301894-29301913 | Msa0355330:CDS | 30.0% | |
AATTAAATCATGGTGCTTTC+TGG | - | chr3_1:29301904-29301923 | Msa0355330:CDS | 30.0% | |
!! | TGCTTTCTGGATTTATTTTC+AGG | - | chr3_1:29301917-29301936 | Msa0355330:CDS | 30.0% |
!!! | TTATTTTCAGGTCTCAAACA+TGG | - | chr3_1:29301929-29301948 | Msa0355330:CDS | 30.0% |
TAACCATAGATTAGGTGTTA+AGG | - | chr3_1:29302116-29302135 | Msa0355330:intron | 30.0% | |
AATCCTTAACACCTAATCTA+TGG | + | chr3_1:29302122-29302141 | None:intergenic | 30.0% | |
! | AGTTTGGTATCTTTTAACGT+AGG | - | chr3_1:29302170-29302189 | Msa0355330:five_prime_UTR | 30.0% |
! | GTTTGGTATCTTTTAACGTA+GGG | - | chr3_1:29302171-29302190 | Msa0355330:five_prime_UTR | 30.0% |
! | AGTACTTCAGTATCTTTTGA+AGG | - | chr3_1:29302202-29302221 | Msa0355330:five_prime_UTR | 30.0% |
AGGATGTCTTATGAACAATT+TGG | - | chr3_1:29302222-29302241 | Msa0355330:five_prime_UTR | 30.0% | |
GACAGAGAGAACCAAATAAA+TGG | + | chr3_1:29299471-29299490 | None:intergenic | 35.0% | |
CTTGAAACTGAAGATTAACG+CGG | + | chr3_1:29299589-29299608 | None:intergenic | 35.0% | |
GCGTTAATCTTCAGTTTCAA+GGG | - | chr3_1:29299588-29299607 | Msa0355330:three_prime_UTR | 35.0% | |
CTTACAACTGTTTCATGGTT+AGG | + | chr3_1:29299766-29299785 | None:intergenic | 35.0% | |
CTAACCATGAAACAGTTGTA+AGG | - | chr3_1:29299764-29299783 | Msa0355330:intron | 35.0% | |
TGTTCCTTACAACTGTTTCA+TGG | + | chr3_1:29299771-29299790 | None:intergenic | 35.0% | |
TGCATAAGAGTTGCAACATT+TGG | - | chr3_1:29299809-29299828 | Msa0355330:three_prime_UTR | 35.0% | |
TTCCACAATGTGCCAATATT+CGG | + | chr3_1:29299878-29299897 | None:intergenic | 35.0% | |
ATAGGTATGGTGAACGAATA+GGG | + | chr3_1:29300005-29300024 | None:intergenic | 35.0% | |
! | AACCTTTTCCATGGTGTTTT+GGG | + | chr3_1:29300065-29300084 | None:intergenic | 35.0% |
! | TAACCTTTTCCATGGTGTTT+TGG | + | chr3_1:29300066-29300085 | None:intergenic | 35.0% |
AAAACACCATGGAAAAGGTT+AGG | - | chr3_1:29300065-29300084 | Msa0355330:intron | 35.0% | |
! | AACAAACCTAACCTTTTCCA+TGG | + | chr3_1:29300074-29300093 | None:intergenic | 35.0% |
!! | GCCTTTTAACTGGTTATGTA+TGG | - | chr3_1:29300170-29300189 | Msa0355330:intron | 35.0% |
! | TTGGTTGAGTTGTTTCGTTA+GGG | - | chr3_1:29300220-29300239 | Msa0355330:intron | 35.0% |
! | TTTTCAGATAGATCACACAG+TGG | + | chr3_1:29300289-29300308 | None:intergenic | 35.0% |
! | CGTGATGATTTTCTGTTTTC+TGG | - | chr3_1:29300311-29300330 | Msa0355330:intron | 35.0% |
AATCTGAGTTTCACTATGCT+AGG | - | chr3_1:29300337-29300356 | Msa0355330:intron | 35.0% | |
CTAGGATTATCTTCTATTCC+TGG | - | chr3_1:29300355-29300374 | Msa0355330:intron | 35.0% | |
TTATCTTCTATTCCTGGAAG+TGG | - | chr3_1:29300361-29300380 | Msa0355330:intron | 35.0% | |
!! | TTTCTGTAGTTAGTCTTGTC+TGG | - | chr3_1:29300525-29300544 | Msa0355330:intron | 35.0% |
!! | TTCTGTAGTTAGTCTTGTCT+GGG | - | chr3_1:29300526-29300545 | Msa0355330:intron | 35.0% |
AACCAAAAGAAAAATCTCGG+AGG | + | chr3_1:29300564-29300583 | None:intergenic | 35.0% | |
ATGTGTAATTTGACTGAAGG+TGG | - | chr3_1:29300716-29300735 | Msa0355330:intron | 35.0% | |
TGTGTAATTTGACTGAAGGT+GGG | - | chr3_1:29300717-29300736 | Msa0355330:intron | 35.0% | |
CTCCTCATCATCAAAATACT+TGG | + | chr3_1:29300835-29300854 | None:intergenic | 35.0% | |
!!! | CAAGTATTTTGATGATGAGG+AGG | - | chr3_1:29300833-29300852 | Msa0355330:intron | 35.0% |
AGAAAATGGAAAAAGATGGG+GGG | + | chr3_1:29300923-29300942 | None:intergenic | 35.0% | |
AGTCGGTTAAATACTTGCAT+TGG | + | chr3_1:29301122-29301141 | None:intergenic | 35.0% | |
!!! | TTAACCGACTTTTTCATCCT+TGG | - | chr3_1:29301132-29301151 | Msa0355330:intron | 35.0% |
TATGTGCAATTTAGCTGTGT+AGG | - | chr3_1:29301192-29301211 | Msa0355330:intron | 35.0% | |
ATGTGCAATTTAGCTGTGTA+GGG | - | chr3_1:29301193-29301212 | Msa0355330:intron | 35.0% | |
! | AGTGCTTTTCTATTTCAGTG+TGG | - | chr3_1:29301319-29301338 | Msa0355330:intron | 35.0% |
! | AAGGACGACTTTTTAGATAG+TGG | - | chr3_1:29301433-29301452 | Msa0355330:intron | 35.0% |
ATGTTGCTCATTGCTTATTG+AGG | - | chr3_1:29301710-29301729 | Msa0355330:CDS | 35.0% | |
GCTTATTGAGGATTCAGATT+AGG | - | chr3_1:29301722-29301741 | Msa0355330:CDS | 35.0% | |
TTGGACTTAGACTAACACTT+GGG | - | chr3_1:29301756-29301775 | Msa0355330:CDS | 35.0% | |
AGTCTTGAGGATCATAGATA+TGG | - | chr3_1:29301786-29301805 | Msa0355330:CDS | 35.0% | |
TCCTTAACACCTAATCTTGA+CGG | + | chr3_1:29301989-29302008 | None:intergenic | 35.0% | |
GATTTAACATGTAGTACTGC+AGG | - | chr3_1:29302138-29302157 | Msa0355330:intron | 35.0% | |
!! | CTGCAGGATTTTTCAAAGTT+TGG | - | chr3_1:29302154-29302173 | Msa0355330:intron | 35.0% |
ACAAAACCTTCTCTGTGAGA+GGG | + | chr3_1:29299521-29299540 | None:intergenic | 40.0% | |
CGCGTTAATCTTCAGTTTCA+AGG | - | chr3_1:29299587-29299606 | Msa0355330:three_prime_UTR | 40.0% | |
GGATTTGAGAGAAAGGAAGA+AGG | + | chr3_1:29299621-29299640 | None:intergenic | 40.0% | |
AGGAACAATGTCGTCAAAGA+AGG | - | chr3_1:29299784-29299803 | Msa0355330:three_prime_UTR | 40.0% | |
TGCAACATTTGGAGACGTAT+TGG | - | chr3_1:29299820-29299839 | Msa0355330:intron | 40.0% | |
CATTTGGAGACGTATTGGAT+TGG | - | chr3_1:29299825-29299844 | Msa0355330:intron | 40.0% | |
TCCACAATGTGCCAATATTC+GGG | + | chr3_1:29299877-29299896 | None:intergenic | 40.0% | |
GAAGAAGCTTATTCATGTCG+CGG | - | chr3_1:29299895-29299914 | Msa0355330:intron | 40.0% | |
GATAGGTATGGTGAACGAAT+AGG | + | chr3_1:29300006-29300025 | None:intergenic | 40.0% | |
TACCACGTTTACGATAGGTA+TGG | + | chr3_1:29300018-29300037 | None:intergenic | 40.0% | |
! | TGGATTAGGTTTGTCACTTG+TGG | - | chr3_1:29300123-29300142 | Msa0355330:intron | 40.0% |
! | GGATTAGGTTTGTCACTTGT+GGG | - | chr3_1:29300124-29300143 | Msa0355330:intron | 40.0% |
! | TGTGGTATAGGCCTTTTAAC+TGG | - | chr3_1:29300160-29300179 | Msa0355330:intron | 40.0% |
! | CTTGGTTGAGTTGTTTCGTT+AGG | - | chr3_1:29300219-29300238 | Msa0355330:intron | 40.0% |
! | TGGTTGAGTTGTTTCGTTAG+GGG | - | chr3_1:29300221-29300240 | Msa0355330:intron | 40.0% |
TATTCCTGGAAGTGGTTCTT+CGG | - | chr3_1:29300369-29300388 | Msa0355330:intron | 40.0% | |
AAAGGGAGTGGCAATGATTA+GGG | + | chr3_1:29300401-29300420 | None:intergenic | 40.0% | |
TAAAGGGAGTGGCAATGATT+AGG | + | chr3_1:29300402-29300421 | None:intergenic | 40.0% | |
AAACACTTCCCACAGAGAAT+TGG | + | chr3_1:29300441-29300460 | None:intergenic | 40.0% | |
!!! | TTCTCTGTGGGAAGTGTTTT+TGG | - | chr3_1:29300442-29300461 | Msa0355330:intron | 40.0% |
!! | TCTGTAGTTAGTCTTGTCTG+GGG | - | chr3_1:29300527-29300546 | Msa0355330:intron | 40.0% |
! | GTCCTCCGAGATTTTTCTTT+TGG | - | chr3_1:29300559-29300578 | Msa0355330:intron | 40.0% |
!!! | GGCCAAGTATTTTGATGATG+AGG | - | chr3_1:29300830-29300849 | Msa0355330:intron | 40.0% |
TGTCTTGAGGAAGATACTCA+AGG | - | chr3_1:29300863-29300882 | Msa0355330:intron | 40.0% | |
GTCTTGAGGAAGATACTCAA+GGG | - | chr3_1:29300864-29300883 | Msa0355330:intron | 40.0% | |
TCTTGAGGAAGATACTCAAG+GGG | - | chr3_1:29300865-29300884 | Msa0355330:intron | 40.0% | |
TCTGTATATTGTGCTCTGTC+TGG | - | chr3_1:29301578-29301597 | Msa0355330:intron | 40.0% | |
! | CCAAACCGAAGAAAGCATAA+AGG | + | chr3_1:29301616-29301635 | None:intergenic | 40.0% |
CCTTTATGCTTTCTTCGGTT+TGG | - | chr3_1:29301613-29301632 | Msa0355330:intron | 40.0% | |
ATTGAGGATTCAGATTAGGG+TGG | - | chr3_1:29301726-29301745 | Msa0355330:CDS | 40.0% | |
TTGAGGATTCAGATTAGGGT+GGG | - | chr3_1:29301727-29301746 | Msa0355330:CDS | 40.0% | |
GTTGGACTTAGACTAACACT+TGG | - | chr3_1:29301755-29301774 | Msa0355330:CDS | 40.0% | |
CTTGGGACTAAAAAGTCTTG+AGG | - | chr3_1:29301773-29301792 | Msa0355330:CDS | 40.0% | |
CCTTAACACCTAATCTTGAC+GGG | + | chr3_1:29301988-29302007 | None:intergenic | 40.0% | |
!!! | GGTATCTTTTAAAGTAGGGG+TGG | - | chr3_1:29302043-29302062 | Msa0355330:intron | 40.0% |
! | TGGTATCTTTTAACGTAGGG+TGG | - | chr3_1:29302174-29302193 | Msa0355330:five_prime_UTR | 40.0% |
CTGAGTAGTGAGAGGAAATA+TGG | - | chr3_1:29302292-29302311 | Msa0355330:five_prime_UTR | 40.0% | |
GACAAAACCTTCTCTGTGAG+AGG | + | chr3_1:29299522-29299541 | None:intergenic | 45.0% | |
!! | GAAGGTTTTGTCCCATTGCT+CGG | - | chr3_1:29299530-29299549 | Msa0355330:three_prime_UTR | 45.0% |
AAGGTGAAGAGGAAGAGGAA+GGG | - | chr3_1:29299957-29299976 | Msa0355330:intron | 45.0% | |
ATAGGGAGGCGATACTAAAG+TGG | + | chr3_1:29299988-29300007 | None:intergenic | 45.0% | |
CACCATACCTATCGTAAACG+TGG | - | chr3_1:29300013-29300032 | Msa0355330:intron | 45.0% | |
AGCGATACCACGTTTACGAT+AGG | + | chr3_1:29300023-29300042 | None:intergenic | 45.0% | |
!! | CTTTTCCATGGTGTTTTGGG+CGG | + | chr3_1:29300062-29300081 | None:intergenic | 45.0% |
!! | TCACTTGTGGGTTAGCGTAT+AGG | - | chr3_1:29300136-29300155 | Msa0355330:intron | 45.0% |
!! | CACTTGTGGGTTAGCGTATA+GGG | - | chr3_1:29300137-29300156 | Msa0355330:intron | 45.0% |
TAGCGTATAGGGTGTGGTAT+AGG | - | chr3_1:29300148-29300167 | Msa0355330:intron | 45.0% | |
! | TTGAGTTGTTTCGTTAGGGG+TGG | - | chr3_1:29300224-29300243 | Msa0355330:intron | 45.0% |
! | TGAGTTGTTTCGTTAGGGGT+GGG | - | chr3_1:29300225-29300244 | Msa0355330:intron | 45.0% |
ATTGCCACTCCCTTTATGAG+TGG | - | chr3_1:29300406-29300425 | Msa0355330:intron | 45.0% | |
TTGCCACTCCCTTTATGAGT+GGG | - | chr3_1:29300407-29300426 | Msa0355330:intron | 45.0% | |
TTTCGCCTCCCACTCATAAA+GGG | + | chr3_1:29300418-29300437 | None:intergenic | 45.0% | |
AGGCGAAACCAATTCTCTGT+GGG | - | chr3_1:29300430-29300449 | Msa0355330:intron | 45.0% | |
TGTTTCCTAATCTTGGGGTG+CGG | - | chr3_1:29300588-29300607 | Msa0355330:intron | 45.0% | |
AAAATCCGCACCCCAAGATT+AGG | + | chr3_1:29300596-29300615 | None:intergenic | 45.0% | |
AAGACGTTTCAGTGCATGTC+CGG | - | chr3_1:29300745-29300764 | Msa0355330:intron | 45.0% | |
TTACACACTTCACGAGGTGA+AGG | - | chr3_1:29300809-29300828 | Msa0355330:intron | 45.0% | |
TGCAATTTAGCTGTGTAGGG+TGG | - | chr3_1:29301196-29301215 | Msa0355330:intron | 45.0% | |
GCAATTTAGCTGTGTAGGGT+GGG | - | chr3_1:29301197-29301216 | Msa0355330:intron | 45.0% | |
TGAGGATTCAGATTAGGGTG+GGG | - | chr3_1:29301728-29301747 | Msa0355330:CDS | 45.0% | |
!! | AGATTAGGGTGGGGTTTTGT+TGG | - | chr3_1:29301737-29301756 | Msa0355330:CDS | 45.0% |
!! | TAATCTTGACGGGCTGAAGA+AGG | + | chr3_1:29301978-29301997 | None:intergenic | 45.0% |
TTCTTCAGCCCGTCAAGATT+AGG | - | chr3_1:29301977-29301996 | Msa0355330:exon | 45.0% | |
CCCGTCAAGATTAGGTGTTA+AGG | - | chr3_1:29301985-29302004 | Msa0355330:intron | 45.0% | |
TTCTCTGTGAGAGGGTTTCG+CGG | + | chr3_1:29299513-29299532 | None:intergenic | 50.0% | |
CTCGTTACTCGCCCGAATAT+TGG | - | chr3_1:29299863-29299882 | Msa0355330:intron | 50.0% | |
GCCCGAATATTGGCACATTG+TGG | - | chr3_1:29299873-29299892 | Msa0355330:intron | 50.0% | |
GTTGCTTACCTCCTCTCTGA+AGG | - | chr3_1:29299938-29299957 | Msa0355330:intron | 50.0% | |
CTTCCTCTTCACCTTCAGAG+AGG | + | chr3_1:29299952-29299971 | None:intergenic | 50.0% | |
! | CTCTGAAGGTGAAGAGGAAG+AGG | - | chr3_1:29299952-29299971 | Msa0355330:intron | 50.0% |
GAAGGTGAAGAGGAAGAGGA+AGG | - | chr3_1:29299956-29299975 | Msa0355330:intron | 50.0% | |
GGTATGGTGAACGAATAGGG+AGG | + | chr3_1:29300002-29300021 | None:intergenic | 50.0% | |
CGCCCAAAACACCATGGAAA+AGG | - | chr3_1:29300060-29300079 | Msa0355330:intron | 50.0% | |
TTGTTTCGTTAGGGGTGGGA+AGG | - | chr3_1:29300229-29300248 | Msa0355330:intron | 50.0% | |
TTCACCGAAGAACCACTTCC+AGG | + | chr3_1:29300376-29300395 | None:intergenic | 50.0% | |
GTTTCGCCTCCCACTCATAA+AGG | + | chr3_1:29300419-29300438 | None:intergenic | 50.0% | |
GAGGCGAAACCAATTCTCTG+TGG | - | chr3_1:29300429-29300448 | Msa0355330:intron | 50.0% | |
! | TTGGGGTGCGGATTTTCTCT+AGG | - | chr3_1:29300600-29300619 | Msa0355330:intron | 50.0% |
GGTTCTCTCTACCTTGAGAC+CGG | - | chr3_1:29300621-29300640 | Msa0355330:intron | 50.0% | |
AAGGTCTGTACAACAGCTGC+CGG | + | chr3_1:29300643-29300662 | None:intergenic | 50.0% | |
AAGAGCAACTCTGCAGCTCT+TGG | - | chr3_1:29300768-29300787 | Msa0355330:intron | 50.0% | |
!! | GATGGGTTACACACTTCACG+AGG | - | chr3_1:29300803-29300822 | Msa0355330:intron | 50.0% |
AGGAGGACGCTATTGTCTTG+AGG | - | chr3_1:29300850-29300869 | Msa0355330:intron | 50.0% | |
TGGAAAAAGATGGGGGGAGT+GGG | + | chr3_1:29300917-29300936 | None:intergenic | 50.0% | |
ATGGAAAAAGATGGGGGGAG+TGG | + | chr3_1:29300918-29300937 | None:intergenic | 50.0% | |
TCAAACATGGATTCTCCCGC+AGG | - | chr3_1:29301942-29301961 | Msa0355330:CDS | 50.0% | |
!! | AGTGAGTGCTGAGTAGTGAG+AGG | - | chr3_1:29302284-29302303 | Msa0355330:five_prime_UTR | 50.0% |
GCGAAACCCTCTCACAGAGA+AGG | - | chr3_1:29299512-29299531 | Msa0355330:three_prime_UTR | 55.0% | |
GTGGATCTGCTCCGAGCAAT+GGG | + | chr3_1:29299544-29299563 | None:intergenic | 55.0% | |
AGATTAACGCGGCGACCGTA+CGG | + | chr3_1:29299578-29299597 | None:intergenic | 55.0% | |
CATGTCGCGGACAATTGCAG+CGG | - | chr3_1:29299908-29299927 | Msa0355330:intron | 55.0% | |
CCTCTTCACCTTCAGAGAGG+AGG | + | chr3_1:29299949-29299968 | None:intergenic | 55.0% | |
! | CCTCCTCTCTGAAGGTGAAG+AGG | - | chr3_1:29299946-29299965 | Msa0355330:intron | 55.0% |
!! | TTCCATGGTGTTTTGGGCGG+CGG | + | chr3_1:29300059-29300078 | None:intergenic | 55.0% |
!! | GTGGGTTAGCGTATAGGGTG+TGG | - | chr3_1:29300142-29300161 | Msa0355330:intron | 55.0% |
CCTCCCACTCATAAAGGGAG+TGG | + | chr3_1:29300413-29300432 | None:intergenic | 55.0% | |
CCACTCCCTTTATGAGTGGG+AGG | - | chr3_1:29300410-29300429 | Msa0355330:intron | 55.0% | |
!! | GTCTTGTCTGGGGAGTGTTC+TGG | - | chr3_1:29300537-29300556 | Msa0355330:intron | 55.0% |
TACAACAGCTGCCGGTCTCA+AGG | + | chr3_1:29300635-29300654 | None:intergenic | 55.0% | |
GAGCTGCAGAGTTGCTCTTC+CGG | + | chr3_1:29300767-29300786 | None:intergenic | 55.0% | |
GAGTGGGTCTCACAGTTAGG+TGG | + | chr3_1:29300901-29300920 | None:intergenic | 55.0% | |
AACATGGATTCTCCCGCAGG+AGG | - | chr3_1:29301945-29301964 | Msa0355330:CDS | 55.0% | |
AGAAGGTCTTCCTCCTCCTG+CGG | + | chr3_1:29301961-29301980 | None:intergenic | 55.0% | |
GGTGGATCTGCTCCGAGCAA+TGG | + | chr3_1:29299545-29299564 | None:intergenic | 60.0% | |
TCGGAGCAGATCCACCGTGT+CGG | - | chr3_1:29299549-29299568 | Msa0355330:three_prime_UTR | 60.0% | |
TAGGGGTGGGAAGGCAGAGT+AGG | - | chr3_1:29300238-29300257 | Msa0355330:intron | 60.0% | |
GTGGGAAGGCAGAGTAGGCT+AGG | - | chr3_1:29300243-29300262 | Msa0355330:intron | 60.0% | |
GGGGAGTGGGTCTCACAGTT+AGG | + | chr3_1:29300904-29300923 | None:intergenic | 60.0% | |
GTGGGCGTGAGGTCAGACTT+TGG | - | chr3_1:29301215-29301234 | Msa0355330:intron | 60.0% | |
ATGGATTCTCCCGCAGGAGG+AGG | - | chr3_1:29301948-29301967 | Msa0355330:CDS | 60.0% | |
GAAGGTCTTCCTCCTCCTGC+GGG | + | chr3_1:29301960-29301979 | None:intergenic | 60.0% | |
GAGCAGATCCACCGTGTCGG+AGG | - | chr3_1:29299552-29299571 | Msa0355330:three_prime_UTR | 65.0% | |
CACCGCCGCCCAAAACACCA+TGG | - | chr3_1:29300054-29300073 | Msa0355330:intron | 65.0% | |
AGCTGTGTAGGGTGGGCGTG+AGG | - | chr3_1:29301204-29301223 | Msa0355330:intron | 65.0% | |
CCACCGTGTCGGAGGCCGTA+CGG | - | chr3_1:29299560-29299579 | Msa0355330:three_prime_UTR | 70.0% | |
CGACCGTACGGCCTCCGACA+CGG | + | chr3_1:29299566-29299585 | None:intergenic | 70.0% | |
CCGTACGGCCTCCGACACGG+TGG | + | chr3_1:29299563-29299582 | None:intergenic | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_1 | gene | 29299461 | 29302315 | 29299461 | ID=Msa0355330;Name=Msa0355330 |
chr3_1 | mRNA | 29299461 | 29302315 | 29299461 | ID=Msa0355330-mRNA-1;Parent=Msa0355330;Name=Msa0355330-mRNA-1;_AED=0.11;_eAED=0.11;_QI=161|1|1|1|0.2|0.16|6|297|153 |
chr3_1 | exon | 29299461 | 29299628 | 29299461 | ID=Msa0355330-mRNA-1:exon:6139;Parent=Msa0355330-mRNA-1 |
chr3_1 | exon | 29299689 | 29299755 | 29299689 | ID=Msa0355330-mRNA-1:exon:6138;Parent=Msa0355330-mRNA-1 |
chr3_1 | exon | 29299778 | 29299837 | 29299778 | ID=Msa0355330-mRNA-1:exon:6137;Parent=Msa0355330-mRNA-1 |
chr3_1 | exon | 29300869 | 29301041 | 29300869 | ID=Msa0355330-mRNA-1:exon:6136;Parent=Msa0355330-mRNA-1 |
chr3_1 | exon | 29301695 | 29301997 | 29301695 | ID=Msa0355330-mRNA-1:exon:6135;Parent=Msa0355330-mRNA-1 |
chr3_1 | exon | 29302167 | 29302315 | 29302167 | ID=Msa0355330-mRNA-1:exon:6134;Parent=Msa0355330-mRNA-1 |
chr3_1 | five_prime_UTR | 29302167 | 29302315 | 29302167 | ID=Msa0355330-mRNA-1:five_prime_utr;Parent=Msa0355330-mRNA-1 |
chr3_1 | five_prime_UTR | 29301986 | 29301997 | 29301986 | ID=Msa0355330-mRNA-1:five_prime_utr;Parent=Msa0355330-mRNA-1 |
chr3_1 | CDS | 29301695 | 29301985 | 29301695 | ID=Msa0355330-mRNA-1:cds;Parent=Msa0355330-mRNA-1 |
chr3_1 | CDS | 29300871 | 29301041 | 29300871 | ID=Msa0355330-mRNA-1:cds;Parent=Msa0355330-mRNA-1 |
chr3_1 | three_prime_UTR | 29300869 | 29300870 | 29300869 | ID=Msa0355330-mRNA-1:three_prime_utr;Parent=Msa0355330-mRNA-1 |
chr3_1 | three_prime_UTR | 29299778 | 29299837 | 29299778 | ID=Msa0355330-mRNA-1:three_prime_utr;Parent=Msa0355330-mRNA-1 |
chr3_1 | three_prime_UTR | 29299689 | 29299755 | 29299689 | ID=Msa0355330-mRNA-1:three_prime_utr;Parent=Msa0355330-mRNA-1 |
chr3_1 | three_prime_UTR | 29299461 | 29299628 | 29299461 | ID=Msa0355330-mRNA-1:three_prime_utr;Parent=Msa0355330-mRNA-1 |
Gene Sequence |
Protein sequence |