AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0355330


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0355330 MtrunA17_Chr3g0088851 88.660 97 9 1 1 97 1 95 2.68e-58 177
Msa0355330 MtrunA17_Chr3g0090311 46.795 156 72 4 6 151 2 156 3.05e-34 118
Msa0355330 MtrunA17_Chr3g0098461 38.217 157 86 6 1 151 1 152 2.48e-19 79.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0355330 AT5G13780.1 43.871 155 76 4 6 150 2 155 6.11e-30 107
Msa0355330 AT1G03150.1 28.070 114 78 3 35 146 39 150 1.76e-11 59.3

Find 73 sgRNAs with CRISPR-Local

Find 237 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACCCAAAGTCCATTTATT+TGG 0.170198 3_1:-29302297 None:intergenic
TTCCACAATGTGCCAATATT+CGG 0.287513 3_1:+29301879 None:intergenic
AGGATGTCTTATGAACAATT+TGG 0.318747 3_1:-29299532 Msa0355330:three_prime_UTR
GACAGAGAGAACCAAATAAA+TGG 0.319346 3_1:+29302286 None:intergenic
CTCGTTACTCGCCCGAATAT+TGG 0.335099 3_1:-29301891 Msa0355330:CDS
ATGCATGCTTCAAAATATTA+AGG 0.337012 3_1:+29299499 None:intergenic
TGCATAAGAGTTGCAACATT+TGG 0.337938 3_1:-29301945 Msa0355330:CDS
CTGAGTAGTGAGAGGAAATA+TGG 0.344451 3_1:-29299462 Msa0355330:three_prime_UTR
GAGCTGCAGAGTTGCTCTTC+CGG 0.347682 3_1:+29300990 None:intergenic
TCCACAATGTGCCAATATTC+GGG 0.349965 3_1:+29301880 None:intergenic
GAACCAAATAAATGGACTTT+GGG 0.357029 3_1:+29302294 None:intergenic
CGCGTTAATCTTCAGTTTCA+AGG 0.367444 3_1:-29302167 Msa0355330:five_prime_UTR
TCTTGGTTTGTTTCAAAAGA+TGG 0.379062 3_1:-29300969 Msa0355330:CDS
AGAACCAAATAAATGGACTT+TGG 0.392524 3_1:+29302293 None:intergenic
TGCAACATTTGGAGACGTAT+TGG 0.394327 3_1:-29301934 Msa0355330:CDS
GATAGGTATGGTGAACGAAT+AGG 0.421395 3_1:+29301751 None:intergenic
TTCTTCAGCCCGTCAAGATT+AGG 0.430168 3_1:-29299777 Msa0355330:intron
CTCCTCATCATCAAAATACT+TGG 0.430558 3_1:+29300922 None:intergenic
ATAGGTATGGTGAACGAATA+GGG 0.433258 3_1:+29301752 None:intergenic
CTCTGAAGGTGAAGAGGAAG+AGG 0.447607 3_1:-29301802 Msa0355330:CDS
CTTGGTTTGTTTCAAAAGAT+GGG 0.449922 3_1:-29300968 Msa0355330:CDS
GTGGATCTGCTCCGAGCAAT+GGG 0.452575 3_1:+29302213 None:intergenic
CGCCCAAAACACCATGGAAA+AGG 0.453353 3_1:-29301694 Msa0355330:intron
AAGAGCAACTCTGCAGCTCT+TGG 0.462439 3_1:-29300986 Msa0355330:CDS
GACAAAACCTTCTCTGTGAG+AGG 0.494687 3_1:+29302235 None:intergenic
AAGACGTTTCAGTGCATGTC+CGG 0.496711 3_1:-29301009 Msa0355330:CDS
TTCTCTGTGAGAGGGTTTCG+CGG 0.497676 3_1:+29302244 None:intergenic
TCCTTAACACCTAATCTTGA+CGG 0.498838 3_1:+29299768 None:intergenic
CATTTGGAGACGTATTGGAT+TGG 0.499964 3_1:-29301929 Msa0355330:CDS
GAAGGTCTTCCTCCTCCTGC+GGG 0.507846 3_1:+29299797 None:intergenic
GTTGCTTACCTCCTCTCTGA+AGG 0.508220 3_1:-29301816 Msa0355330:CDS
GATTTAACATGTAGTACTGC+AGG 0.520464 3_1:-29299616 Msa0355330:intron
ATGGATTCTCCCGCAGGAGG+AGG 0.526333 3_1:-29299806 Msa0355330:three_prime_UTR
AAGGTGAAGAGGAAGAGGAA+GGG 0.530803 3_1:-29301797 Msa0355330:CDS
CTAACCATGAAACAGTTGTA+AGG 0.531736 3_1:-29301990 Msa0355330:intron
CGACCGTACGGCCTCCGACA+CGG 0.536845 3_1:+29302191 None:intergenic
AGGAACAATGTCGTCAAAGA+AGG 0.539052 3_1:-29301970 Msa0355330:exon
GGTGGATCTGCTCCGAGCAA+TGG 0.539383 3_1:+29302212 None:intergenic
TAATCTTGACGGGCTGAAGA+AGG 0.539736 3_1:+29299779 None:intergenic
GCGTTAATCTTCAGTTTCAA+GGG 0.546532 3_1:-29302166 Msa0355330:intron
GTCTTGAGGAAGATACTCAA+GGG 0.554037 3_1:-29300890 Msa0355330:CDS
CCTTAACACCTAATCTTGAC+GGG 0.555318 3_1:+29299769 None:intergenic
TCAAACATGGATTCTCCCGC+AGG 0.555440 3_1:-29299812 Msa0355330:three_prime_UTR
CCACCGTGTCGGAGGCCGTA+CGG 0.555632 3_1:-29302194 Msa0355330:five_prime_UTR
GAAGGTGAAGAGGAAGAGGA+AGG 0.556577 3_1:-29301798 Msa0355330:CDS
AGATTAACGCGGCGACCGTA+CGG 0.559159 3_1:+29302179 None:intergenic
TGTCTTGAGGAAGATACTCA+AGG 0.562517 3_1:-29300891 Msa0355330:CDS
CCTCCTCTCTGAAGGTGAAG+AGG 0.564442 3_1:-29301808 Msa0355330:CDS
GCCCGAATATTGGCACATTG+TGG 0.568169 3_1:-29301881 Msa0355330:CDS
GAGCAGATCCACCGTGTCGG+AGG 0.590065 3_1:-29302202 Msa0355330:five_prime_UTR
ACAAAACCTTCTCTGTGAGA+GGG 0.593528 3_1:+29302236 None:intergenic
AGAAGGTCTTCCTCCTCCTG+CGG 0.599858 3_1:+29299796 None:intergenic
TTACACACTTCACGAGGTGA+AGG 0.607853 3_1:-29300945 Msa0355330:CDS
CCTCTTCACCTTCAGAGAGG+AGG 0.614706 3_1:+29301808 None:intergenic
AGGAGGACGCTATTGTCTTG+AGG 0.615172 3_1:-29300904 Msa0355330:CDS
CACCGCCGCCCAAAACACCA+TGG 0.620119 3_1:-29301700 Msa0355330:CDS
ATAGGGAGGCGATACTAAAG+TGG 0.620673 3_1:+29301769 None:intergenic
CACCATACCTATCGTAAACG+TGG 0.631082 3_1:-29301741 Msa0355330:CDS
GAGTGGGTCTCACAGTTAGG+TGG 0.634645 3_1:+29300856 None:intergenic
CTTCCTCTTCACCTTCAGAG+AGG 0.638002 3_1:+29301805 None:intergenic
AACATGGATTCTCCCGCAGG+AGG 0.639259 3_1:-29299809 Msa0355330:three_prime_UTR
GAAGAAGCTTATTCATGTCG+CGG 0.645766 3_1:-29301859 Msa0355330:CDS
GCGAAACCCTCTCACAGAGA+AGG 0.648548 3_1:-29302242 Msa0355330:five_prime_UTR
AGTGAGTGCTGAGTAGTGAG+AGG 0.650520 3_1:-29299470 Msa0355330:three_prime_UTR
TACCACGTTTACGATAGGTA+TGG 0.651983 3_1:+29301739 None:intergenic
TCGGAGCAGATCCACCGTGT+CGG 0.652706 3_1:-29302205 Msa0355330:five_prime_UTR
AGCGATACCACGTTTACGAT+AGG 0.681782 3_1:+29301734 None:intergenic
TCTTGAGGAAGATACTCAAG+GGG 0.688967 3_1:-29300889 Msa0355330:CDS
CATGTCGCGGACAATTGCAG+CGG 0.697708 3_1:-29301846 Msa0355330:CDS
GATGGGTTACACACTTCACG+AGG 0.713948 3_1:-29300951 Msa0355330:CDS
CTTGAAACTGAAGATTAACG+CGG 0.736003 3_1:+29302168 None:intergenic
CCGTACGGCCTCCGACACGG+TGG 0.742152 3_1:+29302194 None:intergenic
GGTATGGTGAACGAATAGGG+AGG 0.789435 3_1:+29301755 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAACATAGAAAGAAATTA+GGG + chr3_1:29299701-29299720 None:intergenic 15.0%
!!! TCTGTTATAATTTTGTTTTT+TGG - chr3_1:29300103-29300122 Msa0355330:intron 15.0%
!!! ATAATTTTGTTTTTTGGATT+AGG - chr3_1:29300109-29300128 Msa0355330:intron 15.0%
!! GAAAATAATTAAAACTTTGA+TGG - chr3_1:29300955-29300974 Msa0355330:CDS 15.0%
!! AAAGGTTTCAATAGAAATTT+GGG + chr3_1:29299642-29299661 None:intergenic 20.0%
!! TAGGGTTTCAATTAAAATTT+GGG + chr3_1:29299683-29299702 None:intergenic 20.0%
!! TTAGGGTTTCAATTAAAATT+TGG + chr3_1:29299684-29299703 None:intergenic 20.0%
!! CATAAACATAGAAAGAAATT+AGG + chr3_1:29299702-29299721 None:intergenic 20.0%
!!! TTCTAAAGATTGTTATGTTT+TGG + chr3_1:29299742-29299761 None:intergenic 20.0%
!!! TTTCTTCTTGTTAATGATTT+TGG - chr3_1:29300483-29300502 Msa0355330:intron 20.0%
!!! TTGATAGTCACTAATATTTA+GGG - chr3_1:29301054-29301073 Msa0355330:intron 20.0%
!!! ACTTTGTATATTTTGTAGTA+TGG - chr3_1:29302022-29302041 Msa0355330:intron 20.0%
!! ATTTGATATAACCATAGATT+AGG - chr3_1:29302108-29302127 Msa0355330:intron 20.0%
! CAAAGGTTTCAATAGAAATT+TGG + chr3_1:29299643-29299662 None:intergenic 25.0%
! AGGGTTTCAATTAAAATTTG+GGG + chr3_1:29299682-29299701 None:intergenic 25.0%
!! ATGGAGTTTGTTTAATGTTT+AGG - chr3_1:29300189-29300208 Msa0355330:intron 25.0%
! GAAAACCAAAAGAAAAATCT+CGG + chr3_1:29300567-29300586 None:intergenic 25.0%
!!! TTTTCTTGTTTCCTAATCTT+GGG - chr3_1:29300582-29300601 Msa0355330:intron 25.0%
! ACAACCAAAAACATCAAAAA+AGG + chr3_1:29300662-29300681 None:intergenic 25.0%
!! ACATTGTAACAGACTTTTAA+TGG + chr3_1:29300700-29300719 None:intergenic 25.0%
! TCTAGAAAATGGAAAAAGAT+GGG + chr3_1:29300926-29300945 None:intergenic 25.0%
!! TTCTAGAAAATGGAAAAAGA+TGG + chr3_1:29300927-29300946 None:intergenic 25.0%
!! TCACAATACATTCTAGAAAA+TGG + chr3_1:29300937-29300956 None:intergenic 25.0%
!! ATAATTAAAACTTTGATGGC+TGG - chr3_1:29300959-29300978 Msa0355330:CDS 25.0%
! CTGGTTTAATATTTACATGA+TGG - chr3_1:29300978-29300997 Msa0355330:CDS 25.0%
!! CTTGATAGTCACTAATATTT+AGG - chr3_1:29301053-29301072 Msa0355330:intron 25.0%
!!! TGTTGCTTATTGATTTCAAA+TGG - chr3_1:29301355-29301374 Msa0355330:intron 25.0%
! ATGGAGGTAAAAAAAATGAA+TGG - chr3_1:29301374-29301393 Msa0355330:intron 25.0%
! TAACATCATGTAAAGTAACA+CGG + chr3_1:29301400-29301419 None:intergenic 25.0%
! ATGTTAACTACAACCTTATA+AGG - chr3_1:29301414-29301433 Msa0355330:intron 25.0%
! AAATATACTGTTTGAGTATG+TGG + chr3_1:29301486-29301505 None:intergenic 25.0%
!!! TTTGTCTTTTTCAAAGATCT+AGG - chr3_1:29301534-29301553 Msa0355330:intron 25.0%
! AAAGCATAAAGGATTAAAGT+TGG + chr3_1:29301605-29301624 None:intergenic 25.0%
! TTAATCCTTTATGCTTTCTT+CGG - chr3_1:29301608-29301627 Msa0355330:intron 25.0%
! CAATCAATTAAGAGAACAAA+TGG + chr3_1:29301678-29301697 None:intergenic 25.0%
! CATTTGTTCTCTTAATTGAT+TGG - chr3_1:29301676-29301695 Msa0355330:intron 25.0%
! GAAAATATGCAAGTAGTAAA+AGG + chr3_1:29301816-29301835 None:intergenic 25.0%
! TAATCGCAATTCATTAAACA+AGG + chr3_1:29301841-29301860 None:intergenic 25.0%
!!! AGTATGGTATCTTTTAAAGT+AGG - chr3_1:29302038-29302057 Msa0355330:intron 25.0%
!!! GTATGGTATCTTTTAAAGTA+GGG - chr3_1:29302039-29302058 Msa0355330:intron 25.0%
!!! TATGGTATCTTTTAAAGTAG+GGG - chr3_1:29302040-29302059 Msa0355330:intron 25.0%
! ATGCATGCTTCAAAATATTA+AGG + chr3_1:29302258-29302277 None:intergenic 25.0%
! AGAACCAAATAAATGGACTT+TGG + chr3_1:29299464-29299483 None:intergenic 30.0%
! AAATTTGGGATTTGAGAGAA+AGG + chr3_1:29299628-29299647 None:intergenic 30.0%
GTTTATGATTTCTCACTCAA+AGG + chr3_1:29299660-29299679 None:intergenic 30.0%
TTACAACTGTTTCATGGTTA+GGG + chr3_1:29299765-29299784 None:intergenic 30.0%
TCCATACATAACCAGTTAAA+AGG + chr3_1:29300174-29300193 None:intergenic 30.0%
TAATGTTTAGGTATGAAGCT+TGG - chr3_1:29300201-29300220 Msa0355330:intron 30.0%
AGAAAACAGAAAATCATCAC+GGG + chr3_1:29300312-29300331 None:intergenic 30.0%
CAGAAAACAGAAAATCATCA+CGG + chr3_1:29300313-29300332 None:intergenic 30.0%
! CTTCTTGTTAATGATTTTGG+TGG - chr3_1:29300486-29300505 Msa0355330:intron 30.0%
!! TTGTTAATGATTTTGGTGGT+TGG - chr3_1:29300490-29300509 Msa0355330:intron 30.0%
!! GTTTTCTTGTTTCCTAATCT+TGG - chr3_1:29300581-29300600 Msa0355330:intron 30.0%
! TTTCTTGTTTCCTAATCTTG+GGG - chr3_1:29300583-29300602 Msa0355330:intron 30.0%
!!! CAGACCTTTTTTGATGTTTT+TGG - chr3_1:29300655-29300674 Msa0355330:intron 30.0%
ACAATGTGTAATTTGACTGA+AGG - chr3_1:29300713-29300732 Msa0355330:intron 30.0%
!! TCTTGGTTTGTTTCAAAAGA+TGG - chr3_1:29300785-29300804 Msa0355330:intron 30.0%
!! CTTGGTTTGTTTCAAAAGAT+GGG - chr3_1:29300786-29300805 Msa0355330:intron 30.0%
TAGAAAATGGAAAAAGATGG+GGG + chr3_1:29300924-29300943 None:intergenic 30.0%
CTAGAAAATGGAAAAAGATG+GGG + chr3_1:29300925-29300944 None:intergenic 30.0%
! ATTTGATCGCTATCTTTTTG+TGG - chr3_1:29301091-29301110 Msa0355330:intron 30.0%
TTATCCAAGGATGAAAAAGT+CGG + chr3_1:29301139-29301158 None:intergenic 30.0%
! TGTAAAGAGCATATTATCCA+AGG + chr3_1:29301152-29301171 None:intergenic 30.0%
TGGATAATATGCTCTTTACA+TGG - chr3_1:29301152-29301171 Msa0355330:intron 30.0%
!! TTTCTTGAGTGTAGTTCTAA+TGG - chr3_1:29301265-29301284 Msa0355330:intron 30.0%
!! TTCTTGAGTGTAGTTCTAAT+GGG - chr3_1:29301266-29301285 Msa0355330:intron 30.0%
!! TGCTTATTGATTTCAAATGG+AGG - chr3_1:29301358-29301377 Msa0355330:intron 30.0%
TCTAAAAAGTCGTCCTTATA+AGG + chr3_1:29301430-29301449 None:intergenic 30.0%
CTTATTGAGGATTCAGATTA+GGG - chr3_1:29301723-29301742 Msa0355330:CDS 30.0%
TGCTGAAGTCAATTAAATCA+TGG - chr3_1:29301894-29301913 Msa0355330:CDS 30.0%
AATTAAATCATGGTGCTTTC+TGG - chr3_1:29301904-29301923 Msa0355330:CDS 30.0%
!! TGCTTTCTGGATTTATTTTC+AGG - chr3_1:29301917-29301936 Msa0355330:CDS 30.0%
!!! TTATTTTCAGGTCTCAAACA+TGG - chr3_1:29301929-29301948 Msa0355330:CDS 30.0%
TAACCATAGATTAGGTGTTA+AGG - chr3_1:29302116-29302135 Msa0355330:intron 30.0%
AATCCTTAACACCTAATCTA+TGG + chr3_1:29302122-29302141 None:intergenic 30.0%
! AGTTTGGTATCTTTTAACGT+AGG - chr3_1:29302170-29302189 Msa0355330:five_prime_UTR 30.0%
! GTTTGGTATCTTTTAACGTA+GGG - chr3_1:29302171-29302190 Msa0355330:five_prime_UTR 30.0%
! AGTACTTCAGTATCTTTTGA+AGG - chr3_1:29302202-29302221 Msa0355330:five_prime_UTR 30.0%
AGGATGTCTTATGAACAATT+TGG - chr3_1:29302222-29302241 Msa0355330:five_prime_UTR 30.0%
GACAGAGAGAACCAAATAAA+TGG + chr3_1:29299471-29299490 None:intergenic 35.0%
CTTGAAACTGAAGATTAACG+CGG + chr3_1:29299589-29299608 None:intergenic 35.0%
GCGTTAATCTTCAGTTTCAA+GGG - chr3_1:29299588-29299607 Msa0355330:three_prime_UTR 35.0%
CTTACAACTGTTTCATGGTT+AGG + chr3_1:29299766-29299785 None:intergenic 35.0%
CTAACCATGAAACAGTTGTA+AGG - chr3_1:29299764-29299783 Msa0355330:intron 35.0%
TGTTCCTTACAACTGTTTCA+TGG + chr3_1:29299771-29299790 None:intergenic 35.0%
TGCATAAGAGTTGCAACATT+TGG - chr3_1:29299809-29299828 Msa0355330:three_prime_UTR 35.0%
TTCCACAATGTGCCAATATT+CGG + chr3_1:29299878-29299897 None:intergenic 35.0%
ATAGGTATGGTGAACGAATA+GGG + chr3_1:29300005-29300024 None:intergenic 35.0%
! AACCTTTTCCATGGTGTTTT+GGG + chr3_1:29300065-29300084 None:intergenic 35.0%
! TAACCTTTTCCATGGTGTTT+TGG + chr3_1:29300066-29300085 None:intergenic 35.0%
AAAACACCATGGAAAAGGTT+AGG - chr3_1:29300065-29300084 Msa0355330:intron 35.0%
! AACAAACCTAACCTTTTCCA+TGG + chr3_1:29300074-29300093 None:intergenic 35.0%
!! GCCTTTTAACTGGTTATGTA+TGG - chr3_1:29300170-29300189 Msa0355330:intron 35.0%
! TTGGTTGAGTTGTTTCGTTA+GGG - chr3_1:29300220-29300239 Msa0355330:intron 35.0%
! TTTTCAGATAGATCACACAG+TGG + chr3_1:29300289-29300308 None:intergenic 35.0%
! CGTGATGATTTTCTGTTTTC+TGG - chr3_1:29300311-29300330 Msa0355330:intron 35.0%
AATCTGAGTTTCACTATGCT+AGG - chr3_1:29300337-29300356 Msa0355330:intron 35.0%
CTAGGATTATCTTCTATTCC+TGG - chr3_1:29300355-29300374 Msa0355330:intron 35.0%
TTATCTTCTATTCCTGGAAG+TGG - chr3_1:29300361-29300380 Msa0355330:intron 35.0%
!! TTTCTGTAGTTAGTCTTGTC+TGG - chr3_1:29300525-29300544 Msa0355330:intron 35.0%
!! TTCTGTAGTTAGTCTTGTCT+GGG - chr3_1:29300526-29300545 Msa0355330:intron 35.0%
AACCAAAAGAAAAATCTCGG+AGG + chr3_1:29300564-29300583 None:intergenic 35.0%
ATGTGTAATTTGACTGAAGG+TGG - chr3_1:29300716-29300735 Msa0355330:intron 35.0%
TGTGTAATTTGACTGAAGGT+GGG - chr3_1:29300717-29300736 Msa0355330:intron 35.0%
CTCCTCATCATCAAAATACT+TGG + chr3_1:29300835-29300854 None:intergenic 35.0%
!!! CAAGTATTTTGATGATGAGG+AGG - chr3_1:29300833-29300852 Msa0355330:intron 35.0%
AGAAAATGGAAAAAGATGGG+GGG + chr3_1:29300923-29300942 None:intergenic 35.0%
AGTCGGTTAAATACTTGCAT+TGG + chr3_1:29301122-29301141 None:intergenic 35.0%
!!! TTAACCGACTTTTTCATCCT+TGG - chr3_1:29301132-29301151 Msa0355330:intron 35.0%
TATGTGCAATTTAGCTGTGT+AGG - chr3_1:29301192-29301211 Msa0355330:intron 35.0%
ATGTGCAATTTAGCTGTGTA+GGG - chr3_1:29301193-29301212 Msa0355330:intron 35.0%
! AGTGCTTTTCTATTTCAGTG+TGG - chr3_1:29301319-29301338 Msa0355330:intron 35.0%
! AAGGACGACTTTTTAGATAG+TGG - chr3_1:29301433-29301452 Msa0355330:intron 35.0%
ATGTTGCTCATTGCTTATTG+AGG - chr3_1:29301710-29301729 Msa0355330:CDS 35.0%
GCTTATTGAGGATTCAGATT+AGG - chr3_1:29301722-29301741 Msa0355330:CDS 35.0%
TTGGACTTAGACTAACACTT+GGG - chr3_1:29301756-29301775 Msa0355330:CDS 35.0%
AGTCTTGAGGATCATAGATA+TGG - chr3_1:29301786-29301805 Msa0355330:CDS 35.0%
TCCTTAACACCTAATCTTGA+CGG + chr3_1:29301989-29302008 None:intergenic 35.0%
GATTTAACATGTAGTACTGC+AGG - chr3_1:29302138-29302157 Msa0355330:intron 35.0%
!! CTGCAGGATTTTTCAAAGTT+TGG - chr3_1:29302154-29302173 Msa0355330:intron 35.0%
ACAAAACCTTCTCTGTGAGA+GGG + chr3_1:29299521-29299540 None:intergenic 40.0%
CGCGTTAATCTTCAGTTTCA+AGG - chr3_1:29299587-29299606 Msa0355330:three_prime_UTR 40.0%
GGATTTGAGAGAAAGGAAGA+AGG + chr3_1:29299621-29299640 None:intergenic 40.0%
AGGAACAATGTCGTCAAAGA+AGG - chr3_1:29299784-29299803 Msa0355330:three_prime_UTR 40.0%
TGCAACATTTGGAGACGTAT+TGG - chr3_1:29299820-29299839 Msa0355330:intron 40.0%
CATTTGGAGACGTATTGGAT+TGG - chr3_1:29299825-29299844 Msa0355330:intron 40.0%
TCCACAATGTGCCAATATTC+GGG + chr3_1:29299877-29299896 None:intergenic 40.0%
GAAGAAGCTTATTCATGTCG+CGG - chr3_1:29299895-29299914 Msa0355330:intron 40.0%
GATAGGTATGGTGAACGAAT+AGG + chr3_1:29300006-29300025 None:intergenic 40.0%
TACCACGTTTACGATAGGTA+TGG + chr3_1:29300018-29300037 None:intergenic 40.0%
! TGGATTAGGTTTGTCACTTG+TGG - chr3_1:29300123-29300142 Msa0355330:intron 40.0%
! GGATTAGGTTTGTCACTTGT+GGG - chr3_1:29300124-29300143 Msa0355330:intron 40.0%
! TGTGGTATAGGCCTTTTAAC+TGG - chr3_1:29300160-29300179 Msa0355330:intron 40.0%
! CTTGGTTGAGTTGTTTCGTT+AGG - chr3_1:29300219-29300238 Msa0355330:intron 40.0%
! TGGTTGAGTTGTTTCGTTAG+GGG - chr3_1:29300221-29300240 Msa0355330:intron 40.0%
TATTCCTGGAAGTGGTTCTT+CGG - chr3_1:29300369-29300388 Msa0355330:intron 40.0%
AAAGGGAGTGGCAATGATTA+GGG + chr3_1:29300401-29300420 None:intergenic 40.0%
TAAAGGGAGTGGCAATGATT+AGG + chr3_1:29300402-29300421 None:intergenic 40.0%
AAACACTTCCCACAGAGAAT+TGG + chr3_1:29300441-29300460 None:intergenic 40.0%
!!! TTCTCTGTGGGAAGTGTTTT+TGG - chr3_1:29300442-29300461 Msa0355330:intron 40.0%
!! TCTGTAGTTAGTCTTGTCTG+GGG - chr3_1:29300527-29300546 Msa0355330:intron 40.0%
! GTCCTCCGAGATTTTTCTTT+TGG - chr3_1:29300559-29300578 Msa0355330:intron 40.0%
!!! GGCCAAGTATTTTGATGATG+AGG - chr3_1:29300830-29300849 Msa0355330:intron 40.0%
TGTCTTGAGGAAGATACTCA+AGG - chr3_1:29300863-29300882 Msa0355330:intron 40.0%
GTCTTGAGGAAGATACTCAA+GGG - chr3_1:29300864-29300883 Msa0355330:intron 40.0%
TCTTGAGGAAGATACTCAAG+GGG - chr3_1:29300865-29300884 Msa0355330:intron 40.0%
TCTGTATATTGTGCTCTGTC+TGG - chr3_1:29301578-29301597 Msa0355330:intron 40.0%
! CCAAACCGAAGAAAGCATAA+AGG + chr3_1:29301616-29301635 None:intergenic 40.0%
CCTTTATGCTTTCTTCGGTT+TGG - chr3_1:29301613-29301632 Msa0355330:intron 40.0%
ATTGAGGATTCAGATTAGGG+TGG - chr3_1:29301726-29301745 Msa0355330:CDS 40.0%
TTGAGGATTCAGATTAGGGT+GGG - chr3_1:29301727-29301746 Msa0355330:CDS 40.0%
GTTGGACTTAGACTAACACT+TGG - chr3_1:29301755-29301774 Msa0355330:CDS 40.0%
CTTGGGACTAAAAAGTCTTG+AGG - chr3_1:29301773-29301792 Msa0355330:CDS 40.0%
CCTTAACACCTAATCTTGAC+GGG + chr3_1:29301988-29302007 None:intergenic 40.0%
!!! GGTATCTTTTAAAGTAGGGG+TGG - chr3_1:29302043-29302062 Msa0355330:intron 40.0%
! TGGTATCTTTTAACGTAGGG+TGG - chr3_1:29302174-29302193 Msa0355330:five_prime_UTR 40.0%
CTGAGTAGTGAGAGGAAATA+TGG - chr3_1:29302292-29302311 Msa0355330:five_prime_UTR 40.0%
GACAAAACCTTCTCTGTGAG+AGG + chr3_1:29299522-29299541 None:intergenic 45.0%
!! GAAGGTTTTGTCCCATTGCT+CGG - chr3_1:29299530-29299549 Msa0355330:three_prime_UTR 45.0%
AAGGTGAAGAGGAAGAGGAA+GGG - chr3_1:29299957-29299976 Msa0355330:intron 45.0%
ATAGGGAGGCGATACTAAAG+TGG + chr3_1:29299988-29300007 None:intergenic 45.0%
CACCATACCTATCGTAAACG+TGG - chr3_1:29300013-29300032 Msa0355330:intron 45.0%
AGCGATACCACGTTTACGAT+AGG + chr3_1:29300023-29300042 None:intergenic 45.0%
!! CTTTTCCATGGTGTTTTGGG+CGG + chr3_1:29300062-29300081 None:intergenic 45.0%
!! TCACTTGTGGGTTAGCGTAT+AGG - chr3_1:29300136-29300155 Msa0355330:intron 45.0%
!! CACTTGTGGGTTAGCGTATA+GGG - chr3_1:29300137-29300156 Msa0355330:intron 45.0%
TAGCGTATAGGGTGTGGTAT+AGG - chr3_1:29300148-29300167 Msa0355330:intron 45.0%
! TTGAGTTGTTTCGTTAGGGG+TGG - chr3_1:29300224-29300243 Msa0355330:intron 45.0%
! TGAGTTGTTTCGTTAGGGGT+GGG - chr3_1:29300225-29300244 Msa0355330:intron 45.0%
ATTGCCACTCCCTTTATGAG+TGG - chr3_1:29300406-29300425 Msa0355330:intron 45.0%
TTGCCACTCCCTTTATGAGT+GGG - chr3_1:29300407-29300426 Msa0355330:intron 45.0%
TTTCGCCTCCCACTCATAAA+GGG + chr3_1:29300418-29300437 None:intergenic 45.0%
AGGCGAAACCAATTCTCTGT+GGG - chr3_1:29300430-29300449 Msa0355330:intron 45.0%
TGTTTCCTAATCTTGGGGTG+CGG - chr3_1:29300588-29300607 Msa0355330:intron 45.0%
AAAATCCGCACCCCAAGATT+AGG + chr3_1:29300596-29300615 None:intergenic 45.0%
AAGACGTTTCAGTGCATGTC+CGG - chr3_1:29300745-29300764 Msa0355330:intron 45.0%
TTACACACTTCACGAGGTGA+AGG - chr3_1:29300809-29300828 Msa0355330:intron 45.0%
TGCAATTTAGCTGTGTAGGG+TGG - chr3_1:29301196-29301215 Msa0355330:intron 45.0%
GCAATTTAGCTGTGTAGGGT+GGG - chr3_1:29301197-29301216 Msa0355330:intron 45.0%
TGAGGATTCAGATTAGGGTG+GGG - chr3_1:29301728-29301747 Msa0355330:CDS 45.0%
!! AGATTAGGGTGGGGTTTTGT+TGG - chr3_1:29301737-29301756 Msa0355330:CDS 45.0%
!! TAATCTTGACGGGCTGAAGA+AGG + chr3_1:29301978-29301997 None:intergenic 45.0%
TTCTTCAGCCCGTCAAGATT+AGG - chr3_1:29301977-29301996 Msa0355330:exon 45.0%
CCCGTCAAGATTAGGTGTTA+AGG - chr3_1:29301985-29302004 Msa0355330:intron 45.0%
TTCTCTGTGAGAGGGTTTCG+CGG + chr3_1:29299513-29299532 None:intergenic 50.0%
CTCGTTACTCGCCCGAATAT+TGG - chr3_1:29299863-29299882 Msa0355330:intron 50.0%
GCCCGAATATTGGCACATTG+TGG - chr3_1:29299873-29299892 Msa0355330:intron 50.0%
GTTGCTTACCTCCTCTCTGA+AGG - chr3_1:29299938-29299957 Msa0355330:intron 50.0%
CTTCCTCTTCACCTTCAGAG+AGG + chr3_1:29299952-29299971 None:intergenic 50.0%
! CTCTGAAGGTGAAGAGGAAG+AGG - chr3_1:29299952-29299971 Msa0355330:intron 50.0%
GAAGGTGAAGAGGAAGAGGA+AGG - chr3_1:29299956-29299975 Msa0355330:intron 50.0%
GGTATGGTGAACGAATAGGG+AGG + chr3_1:29300002-29300021 None:intergenic 50.0%
CGCCCAAAACACCATGGAAA+AGG - chr3_1:29300060-29300079 Msa0355330:intron 50.0%
TTGTTTCGTTAGGGGTGGGA+AGG - chr3_1:29300229-29300248 Msa0355330:intron 50.0%
TTCACCGAAGAACCACTTCC+AGG + chr3_1:29300376-29300395 None:intergenic 50.0%
GTTTCGCCTCCCACTCATAA+AGG + chr3_1:29300419-29300438 None:intergenic 50.0%
GAGGCGAAACCAATTCTCTG+TGG - chr3_1:29300429-29300448 Msa0355330:intron 50.0%
! TTGGGGTGCGGATTTTCTCT+AGG - chr3_1:29300600-29300619 Msa0355330:intron 50.0%
GGTTCTCTCTACCTTGAGAC+CGG - chr3_1:29300621-29300640 Msa0355330:intron 50.0%
AAGGTCTGTACAACAGCTGC+CGG + chr3_1:29300643-29300662 None:intergenic 50.0%
AAGAGCAACTCTGCAGCTCT+TGG - chr3_1:29300768-29300787 Msa0355330:intron 50.0%
!! GATGGGTTACACACTTCACG+AGG - chr3_1:29300803-29300822 Msa0355330:intron 50.0%
AGGAGGACGCTATTGTCTTG+AGG - chr3_1:29300850-29300869 Msa0355330:intron 50.0%
TGGAAAAAGATGGGGGGAGT+GGG + chr3_1:29300917-29300936 None:intergenic 50.0%
ATGGAAAAAGATGGGGGGAG+TGG + chr3_1:29300918-29300937 None:intergenic 50.0%
TCAAACATGGATTCTCCCGC+AGG - chr3_1:29301942-29301961 Msa0355330:CDS 50.0%
!! AGTGAGTGCTGAGTAGTGAG+AGG - chr3_1:29302284-29302303 Msa0355330:five_prime_UTR 50.0%
GCGAAACCCTCTCACAGAGA+AGG - chr3_1:29299512-29299531 Msa0355330:three_prime_UTR 55.0%
GTGGATCTGCTCCGAGCAAT+GGG + chr3_1:29299544-29299563 None:intergenic 55.0%
AGATTAACGCGGCGACCGTA+CGG + chr3_1:29299578-29299597 None:intergenic 55.0%
CATGTCGCGGACAATTGCAG+CGG - chr3_1:29299908-29299927 Msa0355330:intron 55.0%
CCTCTTCACCTTCAGAGAGG+AGG + chr3_1:29299949-29299968 None:intergenic 55.0%
! CCTCCTCTCTGAAGGTGAAG+AGG - chr3_1:29299946-29299965 Msa0355330:intron 55.0%
!! TTCCATGGTGTTTTGGGCGG+CGG + chr3_1:29300059-29300078 None:intergenic 55.0%
!! GTGGGTTAGCGTATAGGGTG+TGG - chr3_1:29300142-29300161 Msa0355330:intron 55.0%
CCTCCCACTCATAAAGGGAG+TGG + chr3_1:29300413-29300432 None:intergenic 55.0%
CCACTCCCTTTATGAGTGGG+AGG - chr3_1:29300410-29300429 Msa0355330:intron 55.0%
!! GTCTTGTCTGGGGAGTGTTC+TGG - chr3_1:29300537-29300556 Msa0355330:intron 55.0%
TACAACAGCTGCCGGTCTCA+AGG + chr3_1:29300635-29300654 None:intergenic 55.0%
GAGCTGCAGAGTTGCTCTTC+CGG + chr3_1:29300767-29300786 None:intergenic 55.0%
GAGTGGGTCTCACAGTTAGG+TGG + chr3_1:29300901-29300920 None:intergenic 55.0%
AACATGGATTCTCCCGCAGG+AGG - chr3_1:29301945-29301964 Msa0355330:CDS 55.0%
AGAAGGTCTTCCTCCTCCTG+CGG + chr3_1:29301961-29301980 None:intergenic 55.0%
GGTGGATCTGCTCCGAGCAA+TGG + chr3_1:29299545-29299564 None:intergenic 60.0%
TCGGAGCAGATCCACCGTGT+CGG - chr3_1:29299549-29299568 Msa0355330:three_prime_UTR 60.0%
TAGGGGTGGGAAGGCAGAGT+AGG - chr3_1:29300238-29300257 Msa0355330:intron 60.0%
GTGGGAAGGCAGAGTAGGCT+AGG - chr3_1:29300243-29300262 Msa0355330:intron 60.0%
GGGGAGTGGGTCTCACAGTT+AGG + chr3_1:29300904-29300923 None:intergenic 60.0%
GTGGGCGTGAGGTCAGACTT+TGG - chr3_1:29301215-29301234 Msa0355330:intron 60.0%
ATGGATTCTCCCGCAGGAGG+AGG - chr3_1:29301948-29301967 Msa0355330:CDS 60.0%
GAAGGTCTTCCTCCTCCTGC+GGG + chr3_1:29301960-29301979 None:intergenic 60.0%
GAGCAGATCCACCGTGTCGG+AGG - chr3_1:29299552-29299571 Msa0355330:three_prime_UTR 65.0%
CACCGCCGCCCAAAACACCA+TGG - chr3_1:29300054-29300073 Msa0355330:intron 65.0%
AGCTGTGTAGGGTGGGCGTG+AGG - chr3_1:29301204-29301223 Msa0355330:intron 65.0%
CCACCGTGTCGGAGGCCGTA+CGG - chr3_1:29299560-29299579 Msa0355330:three_prime_UTR 70.0%
CGACCGTACGGCCTCCGACA+CGG + chr3_1:29299566-29299585 None:intergenic 70.0%
CCGTACGGCCTCCGACACGG+TGG + chr3_1:29299563-29299582 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 29299461 29302315 29299461 ID=Msa0355330;Name=Msa0355330
chr3_1 mRNA 29299461 29302315 29299461 ID=Msa0355330-mRNA-1;Parent=Msa0355330;Name=Msa0355330-mRNA-1;_AED=0.11;_eAED=0.11;_QI=161|1|1|1|0.2|0.16|6|297|153
chr3_1 exon 29299461 29299628 29299461 ID=Msa0355330-mRNA-1:exon:6139;Parent=Msa0355330-mRNA-1
chr3_1 exon 29299689 29299755 29299689 ID=Msa0355330-mRNA-1:exon:6138;Parent=Msa0355330-mRNA-1
chr3_1 exon 29299778 29299837 29299778 ID=Msa0355330-mRNA-1:exon:6137;Parent=Msa0355330-mRNA-1
chr3_1 exon 29300869 29301041 29300869 ID=Msa0355330-mRNA-1:exon:6136;Parent=Msa0355330-mRNA-1
chr3_1 exon 29301695 29301997 29301695 ID=Msa0355330-mRNA-1:exon:6135;Parent=Msa0355330-mRNA-1
chr3_1 exon 29302167 29302315 29302167 ID=Msa0355330-mRNA-1:exon:6134;Parent=Msa0355330-mRNA-1
chr3_1 five_prime_UTR 29302167 29302315 29302167 ID=Msa0355330-mRNA-1:five_prime_utr;Parent=Msa0355330-mRNA-1
chr3_1 five_prime_UTR 29301986 29301997 29301986 ID=Msa0355330-mRNA-1:five_prime_utr;Parent=Msa0355330-mRNA-1
chr3_1 CDS 29301695 29301985 29301695 ID=Msa0355330-mRNA-1:cds;Parent=Msa0355330-mRNA-1
chr3_1 CDS 29300871 29301041 29300871 ID=Msa0355330-mRNA-1:cds;Parent=Msa0355330-mRNA-1
chr3_1 three_prime_UTR 29300869 29300870 29300869 ID=Msa0355330-mRNA-1:three_prime_utr;Parent=Msa0355330-mRNA-1
chr3_1 three_prime_UTR 29299778 29299837 29299778 ID=Msa0355330-mRNA-1:three_prime_utr;Parent=Msa0355330-mRNA-1
chr3_1 three_prime_UTR 29299689 29299755 29299689 ID=Msa0355330-mRNA-1:three_prime_utr;Parent=Msa0355330-mRNA-1
chr3_1 three_prime_UTR 29299461 29299628 29299461 ID=Msa0355330-mRNA-1:three_prime_utr;Parent=Msa0355330-mRNA-1
Gene Sequence

>Msa0355330

ATGTCGTCAAAGAAGGTGTGCATAAGAGTTGCAACATTTGGAGACGTATTGGATTGGAACAGTAACAACAATCTCGTTACTCGCCCGAATATTGGCACATTGTGGAAGAAGCTTATTCATGTCGCGGACAATTGCAGCGGCTGTATTGTTGCTTACCTCCTCTCTGAAGGTGAAGAGGAAGAGGAAGGGAATGACCACTTTAGTATCGCCTCCCTATTCGTTCACCATACCTATCGTAAACGTGGTATCGCTACTGATCTTATCACCGCCGCCCAAAACACCATGGAAAAGGTGGGTGCTAAAGACGTTTCAGTGCATGTCCGGAAGAGCAACTCTGCAGCTCTTGGTTTGTTTCAAAAGATGGGTTACACACTTCACGAGGTGAAGGCCAAGTATTTTGATGATGAGGAGGACGCTATTGTCTTGAGGAAGATACTCAAGGGGAAGCATGTTGCCACCTAA

Protein sequence

>Msa0355330

MSSKKVCIRVATFGDVLDWNSNNNLVTRPNIGTLWKKLIHVADNCSGCIVAYLLSEGEEEEEGNDHFSIASLFVHHTYRKRGIATDLITAAQNTMEKVGAKDVSVHVRKSNSAALGLFQKMGYTLHEVKAKYFDDEEDAIVLRKILKGKHVAT*