Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0357620 | KEH33239.1 | 86.928 | 153 | 15 | 2 | 1 | 153 | 8 | 155 | 9.85e-89 | 265 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0357620 | sp|Q9FKI4|NAA10_ARATH | 43.871 | 155 | 76 | 4 | 6 | 150 | 2 | 155 | 6.01e-29 | 107 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0357620 | A0A072UTR7 | 86.928 | 153 | 15 | 2 | 1 | 153 | 8 | 155 | 4.71e-89 | 265 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0357620 | TR | GNAT |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0355330 | Msa0357620 | 0.971657 | 1.649422e-133 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0357620 | MtrunA17_Chr3g0088851 | 88.660 | 97 | 9 | 1 | 1 | 97 | 1 | 95 | 2.68e-58 | 177 |
| Msa0357620 | MtrunA17_Chr3g0090311 | 46.795 | 156 | 72 | 4 | 6 | 151 | 2 | 156 | 3.05e-34 | 118 |
| Msa0357620 | MtrunA17_Chr3g0098461 | 38.217 | 157 | 86 | 6 | 1 | 151 | 1 | 152 | 2.48e-19 | 79.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0357620 | AT5G13780.1 | 43.871 | 155 | 76 | 4 | 6 | 150 | 2 | 155 | 6.11e-30 | 107 |
| Msa0357620 | AT1G03150.1 | 28.070 | 114 | 78 | 3 | 35 | 146 | 39 | 150 | 1.76e-11 | 59.3 |
Find 72 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACCCAAAGTCCATTTATT+TGG | 0.170198 | 3_1:-41064188 | None:intergenic |
| TTCCACAATGTGCCAATATT+CGG | 0.287513 | 3_1:+41063770 | None:intergenic |
| AGGATGTCTTATGAACAATT+TGG | 0.318747 | 3_1:-41061424 | Msa0357620:three_prime_UTR |
| GACAGAGAGAACCAAATAAA+TGG | 0.319346 | 3_1:+41064177 | None:intergenic |
| CTCGTTACTCGCCCGAATAT+TGG | 0.335099 | 3_1:-41063782 | Msa0357620:CDS |
| ATGCATGCTTCAAAATATTA+AGG | 0.337012 | 3_1:+41061391 | None:intergenic |
| TGCATAAGAGTTGCAACATT+TGG | 0.337938 | 3_1:-41063836 | Msa0357620:CDS |
| CTGAGTAGTGAGAGGAAATA+TGG | 0.344451 | 3_1:-41061354 | Msa0357620:three_prime_UTR |
| GAGCTGCAGAGTTGCTCTTC+CGG | 0.347682 | 3_1:+41062882 | None:intergenic |
| TCCACAATGTGCCAATATTC+GGG | 0.349965 | 3_1:+41063771 | None:intergenic |
| GAACCAAATAAATGGACTTT+GGG | 0.357029 | 3_1:+41064185 | None:intergenic |
| CGCGTTAATCTTCAGTTTCA+AGG | 0.367444 | 3_1:-41064058 | Msa0357620:five_prime_UTR |
| TCTTGGTTTGTTTCAAAAGA+TGG | 0.379062 | 3_1:-41062861 | Msa0357620:CDS |
| AGAACCAAATAAATGGACTT+TGG | 0.392524 | 3_1:+41064184 | None:intergenic |
| TGCAACATTTGGAGACGTAT+TGG | 0.394327 | 3_1:-41063825 | Msa0357620:CDS |
| GATAGGTATGGTGAACGAAT+AGG | 0.421395 | 3_1:+41063642 | None:intergenic |
| TTCTTCAGCCAGTCAAGATT+AGG | 0.429891 | 3_1:-41061669 | Msa0357620:intron |
| CTCCTCATCATCAAAATACT+TGG | 0.430558 | 3_1:+41062814 | None:intergenic |
| ATAGGTATGGTGAACGAATA+GGG | 0.433258 | 3_1:+41063643 | None:intergenic |
| CTCTGAAGGTGAAGAGGAAG+AGG | 0.447607 | 3_1:-41063693 | Msa0357620:CDS |
| CTTGGTTTGTTTCAAAAGAT+GGG | 0.449922 | 3_1:-41062860 | Msa0357620:CDS |
| GTGGATCTGCTCCGAGCAAT+GGG | 0.452575 | 3_1:+41064104 | None:intergenic |
| CGCCCAAAACACCATGGAAA+AGG | 0.453353 | 3_1:-41063585 | Msa0357620:intron |
| AAGAGCAACTCTGCAGCTCT+TGG | 0.462439 | 3_1:-41062878 | Msa0357620:CDS |
| GACAAAACCTTCTCTGTGAG+AGG | 0.494687 | 3_1:+41064126 | None:intergenic |
| AAGACGTTTCAGTGCATGTC+CGG | 0.496711 | 3_1:-41062901 | Msa0357620:CDS |
| TTCTCTGTGAGAGGGTTTCG+CGG | 0.497676 | 3_1:+41064135 | None:intergenic |
| CATTTGGAGACGTATTGGAT+TGG | 0.499964 | 3_1:-41063820 | Msa0357620:CDS |
| GAAGGTCTTCCTCCTCCTGC+GGG | 0.507846 | 3_1:+41061689 | None:intergenic |
| GTTGCTTACCTCCTCTCTGA+AGG | 0.508220 | 3_1:-41063707 | Msa0357620:CDS |
| GATTTAACATGTAGTACTGC+AGG | 0.520464 | 3_1:-41061508 | Msa0357620:intron |
| ATGGATTCTCCCGCAGGAGG+AGG | 0.526333 | 3_1:-41061698 | Msa0357620:three_prime_UTR |
| AAGGTGAAGAGGAAGAGGAA+GGG | 0.530803 | 3_1:-41063688 | Msa0357620:CDS |
| CTAACCATGAAACAGTTGTA+AGG | 0.531736 | 3_1:-41063881 | Msa0357620:intron |
| CCTTAACACCTAATCTTGAC+TGG | 0.533110 | 3_1:+41061661 | None:intergenic |
| CGACCGTACGGCCTCCGACA+CGG | 0.536845 | 3_1:+41064082 | None:intergenic |
| AGGAACAATGTCGTCAAAGA+AGG | 0.539052 | 3_1:-41063861 | Msa0357620:exon |
| GGTGGATCTGCTCCGAGCAA+TGG | 0.539383 | 3_1:+41064103 | None:intergenic |
| GCGTTAATCTTCAGTTTCAA+GGG | 0.546532 | 3_1:-41064057 | Msa0357620:intron |
| TAATCTTGACTGGCTGAAGA+AGG | 0.548995 | 3_1:+41061671 | None:intergenic |
| GTCTTGAGGAAGATACTCAA+GGG | 0.554037 | 3_1:-41062782 | Msa0357620:CDS |
| TCAAACATGGATTCTCCCGC+AGG | 0.555440 | 3_1:-41061704 | Msa0357620:three_prime_UTR |
| CCACCGTGTCGGAGGCCGTA+CGG | 0.555632 | 3_1:-41064085 | Msa0357620:five_prime_UTR |
| GAAGGTGAAGAGGAAGAGGA+AGG | 0.556577 | 3_1:-41063689 | Msa0357620:CDS |
| AGATTAACGCGGCGACCGTA+CGG | 0.559159 | 3_1:+41064070 | None:intergenic |
| TGTCTTGAGGAAGATACTCA+AGG | 0.562517 | 3_1:-41062783 | Msa0357620:CDS |
| CCTCCTCTCTGAAGGTGAAG+AGG | 0.564442 | 3_1:-41063699 | Msa0357620:CDS |
| GCCCGAATATTGGCACATTG+TGG | 0.568169 | 3_1:-41063772 | Msa0357620:CDS |
| GAGCAGATCCACCGTGTCGG+AGG | 0.590065 | 3_1:-41064093 | Msa0357620:five_prime_UTR |
| ACAAAACCTTCTCTGTGAGA+GGG | 0.593528 | 3_1:+41064127 | None:intergenic |
| AGAAGGTCTTCCTCCTCCTG+CGG | 0.599858 | 3_1:+41061688 | None:intergenic |
| TTACACACTTCACGAGGTGA+AGG | 0.607853 | 3_1:-41062837 | Msa0357620:CDS |
| CCTCTTCACCTTCAGAGAGG+AGG | 0.614706 | 3_1:+41063699 | None:intergenic |
| AGGAGGACGCTATTGTCTTG+AGG | 0.615172 | 3_1:-41062796 | Msa0357620:CDS |
| CACCGCCGCCCAAAACACCA+TGG | 0.620119 | 3_1:-41063591 | Msa0357620:CDS |
| ATAGGGAGGCGATACTAAAG+TGG | 0.620673 | 3_1:+41063660 | None:intergenic |
| CACCATACCTATCGTAAACG+TGG | 0.631082 | 3_1:-41063632 | Msa0357620:CDS |
| GAGTGGGTCTCACAGTTAGG+TGG | 0.634645 | 3_1:+41062748 | None:intergenic |
| CTTCCTCTTCACCTTCAGAG+AGG | 0.638002 | 3_1:+41063696 | None:intergenic |
| AACATGGATTCTCCCGCAGG+AGG | 0.639259 | 3_1:-41061701 | Msa0357620:three_prime_UTR |
| GAAGAAGCTTATTCATGTCG+CGG | 0.645766 | 3_1:-41063750 | Msa0357620:CDS |
| GCGAAACCCTCTCACAGAGA+AGG | 0.648548 | 3_1:-41064133 | Msa0357620:five_prime_UTR |
| AGTGAGTGCTGAGTAGTGAG+AGG | 0.650520 | 3_1:-41061362 | Msa0357620:three_prime_UTR |
| TACCACGTTTACGATAGGTA+TGG | 0.651983 | 3_1:+41063630 | None:intergenic |
| TCGGAGCAGATCCACCGTGT+CGG | 0.652706 | 3_1:-41064096 | Msa0357620:five_prime_UTR |
| AGCGATACCACGTTTACGAT+AGG | 0.681782 | 3_1:+41063625 | None:intergenic |
| TCTTGAGGAAGATACTCAAG+GGG | 0.688967 | 3_1:-41062781 | Msa0357620:CDS |
| CATGTCGCGGACAATTGCAG+CGG | 0.697708 | 3_1:-41063737 | Msa0357620:CDS |
| GATGGGTTACACACTTCACG+AGG | 0.713948 | 3_1:-41062843 | Msa0357620:CDS |
| CTTGAAACTGAAGATTAACG+CGG | 0.736003 | 3_1:+41064059 | None:intergenic |
| CCGTACGGCCTCCGACACGG+TGG | 0.742152 | 3_1:+41064085 | None:intergenic |
| GGTATGGTGAACGAATAGGG+AGG | 0.789435 | 3_1:+41063646 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAACATAGAAAGAAATTA+GGG | + | chr3_1:41061593-41061612 | None:intergenic | 15.0% |
| !!! | TTCTGTTATAATTTTGTTTT+TGG | - | chr3_1:41061994-41062013 | Msa0357620:intron | 15.0% |
| !!! | TATAATTTTGTTTTTGGATT+AGG | - | chr3_1:41062000-41062019 | Msa0357620:intron | 15.0% |
| !! | GAAAATAATTAAAACTTTGA+TGG | - | chr3_1:41062846-41062865 | Msa0357620:CDS | 15.0% |
| !! | AAAGGTTTCAATAGAAATTT+GGG | + | chr3_1:41061534-41061553 | None:intergenic | 20.0% |
| !! | TAGGGTTTCAATTAAAATTT+GGG | + | chr3_1:41061575-41061594 | None:intergenic | 20.0% |
| !! | TTAGGGTTTCAATTAAAATT+TGG | + | chr3_1:41061576-41061595 | None:intergenic | 20.0% |
| !! | CATAAACATAGAAAGAAATT+AGG | + | chr3_1:41061594-41061613 | None:intergenic | 20.0% |
| !!! | TTCTAAAGATTGTTATGTTT+TGG | + | chr3_1:41061634-41061653 | None:intergenic | 20.0% |
| !!! | TTTCTTCTTGTTAATGATTT+TGG | - | chr3_1:41062374-41062393 | Msa0357620:intron | 20.0% |
| !!! | AGACTTTTAATGGAAAAAAT+AGG | + | chr3_1:41062581-41062600 | None:intergenic | 20.0% |
| !!! | TTGATAGTCACTAATATTTA+GGG | - | chr3_1:41062945-41062964 | Msa0357620:intron | 20.0% |
| !!! | ACTTTGTATATTTTGTAGTA+TGG | - | chr3_1:41063913-41063932 | Msa0357620:intron | 20.0% |
| !! | ATTTGATATAACCATAGATT+AGG | - | chr3_1:41063999-41064018 | Msa0357620:intron | 20.0% |
| ! | CAAAGGTTTCAATAGAAATT+TGG | + | chr3_1:41061535-41061554 | None:intergenic | 25.0% |
| ! | AGGGTTTCAATTAAAATTTG+GGG | + | chr3_1:41061574-41061593 | None:intergenic | 25.0% |
| !! | ATGGAGTTTGTTTAATGTTT+AGG | - | chr3_1:41062080-41062099 | Msa0357620:intron | 25.0% |
| ! | GAAAACCAAAAGAAAAATCT+CGG | + | chr3_1:41062458-41062477 | None:intergenic | 25.0% |
| ! | ACAACCAAAAACATCAAAAA+AGG | + | chr3_1:41062553-41062572 | None:intergenic | 25.0% |
| !! | ACATTGTAACAGACTTTTAA+TGG | + | chr3_1:41062591-41062610 | None:intergenic | 25.0% |
| ! | TCTAGAAAATGGAAAAAGAT+GGG | + | chr3_1:41062817-41062836 | None:intergenic | 25.0% |
| !! | TTCTAGAAAATGGAAAAAGA+TGG | + | chr3_1:41062818-41062837 | None:intergenic | 25.0% |
| !! | TCACAATACATTCTAGAAAA+TGG | + | chr3_1:41062828-41062847 | None:intergenic | 25.0% |
| !! | ATAATTAAAACTTTGATGGC+TGG | - | chr3_1:41062850-41062869 | Msa0357620:CDS | 25.0% |
| ! | CTGGTTTAATATTTACATGA+TGG | - | chr3_1:41062869-41062888 | Msa0357620:CDS | 25.0% |
| !! | CTTGATAGTCACTAATATTT+AGG | - | chr3_1:41062944-41062963 | Msa0357620:intron | 25.0% |
| !!! | TGTTGCTTATTGATTTCAAA+TGG | - | chr3_1:41063246-41063265 | Msa0357620:intron | 25.0% |
| ! | ATGGAGGTAAAAAAAATGAA+TGG | - | chr3_1:41063265-41063284 | Msa0357620:intron | 25.0% |
| ! | TAACATCATGTAAAGTAACA+CGG | + | chr3_1:41063291-41063310 | None:intergenic | 25.0% |
| ! | ATGTTAACTACAACCTTATA+AGG | - | chr3_1:41063305-41063324 | Msa0357620:intron | 25.0% |
| ! | AAATATACTGTTTGAGTATG+TGG | + | chr3_1:41063377-41063396 | None:intergenic | 25.0% |
| !!! | TTTGTCTTTTTCAAAGATCT+AGG | - | chr3_1:41063425-41063444 | Msa0357620:intron | 25.0% |
| ! | AAAGCATAAAGGATTAAAGT+TGG | + | chr3_1:41063496-41063515 | None:intergenic | 25.0% |
| ! | TTAATCCTTTATGCTTTCTT+CGG | - | chr3_1:41063499-41063518 | Msa0357620:intron | 25.0% |
| ! | CAATCAATTAAGAGAACAAA+TGG | + | chr3_1:41063569-41063588 | None:intergenic | 25.0% |
| ! | CATTTGTTCTCTTAATTGAT+TGG | - | chr3_1:41063567-41063586 | Msa0357620:intron | 25.0% |
| ! | GAAAATATGCAAGTAGTAAA+AGG | + | chr3_1:41063707-41063726 | None:intergenic | 25.0% |
| ! | TAATCGCAATTCATTAAACA+AGG | + | chr3_1:41063732-41063751 | None:intergenic | 25.0% |
| !!! | AGTATGGTATCTTTTAAAGT+AGG | - | chr3_1:41063929-41063948 | Msa0357620:intron | 25.0% |
| !!! | GTATGGTATCTTTTAAAGTA+GGG | - | chr3_1:41063930-41063949 | Msa0357620:intron | 25.0% |
| !!! | TATGGTATCTTTTAAAGTAG+GGG | - | chr3_1:41063931-41063950 | Msa0357620:intron | 25.0% |
| ! | ATGCATGCTTCAAAATATTA+AGG | + | chr3_1:41064149-41064168 | None:intergenic | 25.0% |
| ! | AGAACCAAATAAATGGACTT+TGG | + | chr3_1:41061356-41061375 | None:intergenic | 30.0% |
| ! | AAATTTGGGATTTGAGAGAA+AGG | + | chr3_1:41061520-41061539 | None:intergenic | 30.0% |
| GTTTATGATTTCTCACTCAA+AGG | + | chr3_1:41061552-41061571 | None:intergenic | 30.0% | |
| TTACAACTGTTTCATGGTTA+GGG | + | chr3_1:41061657-41061676 | None:intergenic | 30.0% | |
| TCCATACATAACCAGTTAAA+AGG | + | chr3_1:41062065-41062084 | None:intergenic | 30.0% | |
| TAATGTTTAGGTATGAAGCT+TGG | - | chr3_1:41062092-41062111 | Msa0357620:intron | 30.0% | |
| AGAAAACAGAAAATCATCAC+GGG | + | chr3_1:41062203-41062222 | None:intergenic | 30.0% | |
| CAGAAAACAGAAAATCATCA+CGG | + | chr3_1:41062204-41062223 | None:intergenic | 30.0% | |
| ! | CTTCTTGTTAATGATTTTGG+TGG | - | chr3_1:41062377-41062396 | Msa0357620:intron | 30.0% |
| !! | TTGTTAATGATTTTGGTGGT+TGG | - | chr3_1:41062381-41062400 | Msa0357620:intron | 30.0% |
| ! | TTTCTTGTTTCCTAATCTTG+AGG | - | chr3_1:41062474-41062493 | Msa0357620:intron | 30.0% |
| !!! | CAGACCTTTTTTGATGTTTT+TGG | - | chr3_1:41062546-41062565 | Msa0357620:intron | 30.0% |
| ACAATGTGTAATTTGACTGA+AGG | - | chr3_1:41062604-41062623 | Msa0357620:intron | 30.0% | |
| !! | TCTTGGTTTGTTTCAAAAGA+TGG | - | chr3_1:41062676-41062695 | Msa0357620:intron | 30.0% |
| !! | CTTGGTTTGTTTCAAAAGAT+GGG | - | chr3_1:41062677-41062696 | Msa0357620:intron | 30.0% |
| TAGAAAATGGAAAAAGATGG+GGG | + | chr3_1:41062815-41062834 | None:intergenic | 30.0% | |
| CTAGAAAATGGAAAAAGATG+GGG | + | chr3_1:41062816-41062835 | None:intergenic | 30.0% | |
| ! | ATTTGATCGCTATCTTTTTG+TGG | - | chr3_1:41062982-41063001 | Msa0357620:intron | 30.0% |
| TTATCCAAGGATGAAAAAGT+CGG | + | chr3_1:41063030-41063049 | None:intergenic | 30.0% | |
| ! | TGTAAAGAGCATATTATCCA+AGG | + | chr3_1:41063043-41063062 | None:intergenic | 30.0% |
| TGGATAATATGCTCTTTACA+TGG | - | chr3_1:41063043-41063062 | Msa0357620:intron | 30.0% | |
| !! | TTTCTTGAGTGTAGTTCTAA+TGG | - | chr3_1:41063156-41063175 | Msa0357620:intron | 30.0% |
| !! | TTCTTGAGTGTAGTTCTAAT+GGG | - | chr3_1:41063157-41063176 | Msa0357620:intron | 30.0% |
| !! | TGCTTATTGATTTCAAATGG+AGG | - | chr3_1:41063249-41063268 | Msa0357620:intron | 30.0% |
| TCTAAAAAGTCGTCCTTATA+AGG | + | chr3_1:41063321-41063340 | None:intergenic | 30.0% | |
| CTTATTGAGGATTCAGATTA+GGG | - | chr3_1:41063614-41063633 | Msa0357620:CDS | 30.0% | |
| TGCTGAAGTCAATTAAATCA+TGG | - | chr3_1:41063785-41063804 | Msa0357620:CDS | 30.0% | |
| AATTAAATCATGGTGCTTTC+TGG | - | chr3_1:41063795-41063814 | Msa0357620:CDS | 30.0% | |
| !! | TGCTTTCTGGATTTATTTTC+AGG | - | chr3_1:41063808-41063827 | Msa0357620:CDS | 30.0% |
| !!! | TTATTTTCAGGTCTCAAACA+TGG | - | chr3_1:41063820-41063839 | Msa0357620:CDS | 30.0% |
| TAACCATAGATTAGGTGTTA+AGG | - | chr3_1:41064007-41064026 | Msa0357620:intron | 30.0% | |
| AATCCTTAACACCTAATCTA+TGG | + | chr3_1:41064013-41064032 | None:intergenic | 30.0% | |
| ! | AGTTTGGTATCTTTTAACGT+AGG | - | chr3_1:41064061-41064080 | Msa0357620:five_prime_UTR | 30.0% |
| ! | GTTTGGTATCTTTTAACGTA+GGG | - | chr3_1:41064062-41064081 | Msa0357620:five_prime_UTR | 30.0% |
| ! | AGTACTTCAGTATCTTTTGA+AGG | - | chr3_1:41064093-41064112 | Msa0357620:five_prime_UTR | 30.0% |
| AGGATGTCTTATGAACAATT+TGG | - | chr3_1:41064113-41064132 | Msa0357620:five_prime_UTR | 30.0% | |
| GACAGAGAGAACCAAATAAA+TGG | + | chr3_1:41061363-41061382 | None:intergenic | 35.0% | |
| CTTGAAACTGAAGATTAACG+CGG | + | chr3_1:41061481-41061500 | None:intergenic | 35.0% | |
| GCGTTAATCTTCAGTTTCAA+GGG | - | chr3_1:41061480-41061499 | Msa0357620:three_prime_UTR | 35.0% | |
| CTTACAACTGTTTCATGGTT+AGG | + | chr3_1:41061658-41061677 | None:intergenic | 35.0% | |
| CTAACCATGAAACAGTTGTA+AGG | - | chr3_1:41061656-41061675 | Msa0357620:intron | 35.0% | |
| TGTTCCTTACAACTGTTTCA+TGG | + | chr3_1:41061663-41061682 | None:intergenic | 35.0% | |
| TGCATAAGAGTTGCAACATT+TGG | - | chr3_1:41061701-41061720 | Msa0357620:three_prime_UTR | 35.0% | |
| TTCCACAATGTGCCAATATT+CGG | + | chr3_1:41061770-41061789 | None:intergenic | 35.0% | |
| ATAGGTATGGTGAACGAATA+GGG | + | chr3_1:41061897-41061916 | None:intergenic | 35.0% | |
| ! | AACCTTTTCCATGGTGTTTT+GGG | + | chr3_1:41061957-41061976 | None:intergenic | 35.0% |
| ! | TAACCTTTTCCATGGTGTTT+TGG | + | chr3_1:41061958-41061977 | None:intergenic | 35.0% |
| AAAACACCATGGAAAAGGTT+AGG | - | chr3_1:41061957-41061976 | Msa0357620:intron | 35.0% | |
| ! | AACAAACCTAACCTTTTCCA+TGG | + | chr3_1:41061966-41061985 | None:intergenic | 35.0% |
| !! | GCCTTTTAACTGGTTATGTA+TGG | - | chr3_1:41062061-41062080 | Msa0357620:intron | 35.0% |
| ! | TTGGTTGAGTTGTTTCGTTA+GGG | - | chr3_1:41062111-41062130 | Msa0357620:intron | 35.0% |
| ! | TTTTCAGATAGATCACACAG+TGG | + | chr3_1:41062180-41062199 | None:intergenic | 35.0% |
| ! | CGTGATGATTTTCTGTTTTC+TGG | - | chr3_1:41062202-41062221 | Msa0357620:intron | 35.0% |
| AATCTGAGTTTCACTATGCT+AGG | - | chr3_1:41062228-41062247 | Msa0357620:intron | 35.0% | |
| CTAGGATTATCTTCTATTCC+TGG | - | chr3_1:41062246-41062265 | Msa0357620:intron | 35.0% | |
| TTATCTTCTATTCCTGGAAG+TGG | - | chr3_1:41062252-41062271 | Msa0357620:intron | 35.0% | |
| !! | TTTCTGTAGTTAGTCTTGTC+TGG | - | chr3_1:41062416-41062435 | Msa0357620:intron | 35.0% |
| !! | TTCTGTAGTTAGTCTTGTCT+GGG | - | chr3_1:41062417-41062436 | Msa0357620:intron | 35.0% |
| AACCAAAAGAAAAATCTCGG+AGG | + | chr3_1:41062455-41062474 | None:intergenic | 35.0% | |
| ATGTGTAATTTGACTGAAGG+TGG | - | chr3_1:41062607-41062626 | Msa0357620:intron | 35.0% | |
| TGTGTAATTTGACTGAAGGT+GGG | - | chr3_1:41062608-41062627 | Msa0357620:intron | 35.0% | |
| CTCCTCATCATCAAAATACT+TGG | + | chr3_1:41062726-41062745 | None:intergenic | 35.0% | |
| !!! | CAAGTATTTTGATGATGAGG+AGG | - | chr3_1:41062724-41062743 | Msa0357620:intron | 35.0% |
| AGAAAATGGAAAAAGATGGG+GGG | + | chr3_1:41062814-41062833 | None:intergenic | 35.0% | |
| AGTCGGTTAAATACTTGCAT+TGG | + | chr3_1:41063013-41063032 | None:intergenic | 35.0% | |
| !!! | TTAACCGACTTTTTCATCCT+TGG | - | chr3_1:41063023-41063042 | Msa0357620:intron | 35.0% |
| TATGTGCAATTTAGCTGTGT+AGG | - | chr3_1:41063083-41063102 | Msa0357620:intron | 35.0% | |
| ATGTGCAATTTAGCTGTGTA+GGG | - | chr3_1:41063084-41063103 | Msa0357620:intron | 35.0% | |
| ! | AGTGCTTTTCTATTTCAGTG+TGG | - | chr3_1:41063210-41063229 | Msa0357620:intron | 35.0% |
| ! | AAGGACGACTTTTTAGATAG+TGG | - | chr3_1:41063324-41063343 | Msa0357620:intron | 35.0% |
| ! | ACAAACCGAAGAAAGCATAA+AGG | + | chr3_1:41063507-41063526 | None:intergenic | 35.0% |
| ATGTTGCTCATTGCTTATTG+AGG | - | chr3_1:41063601-41063620 | Msa0357620:CDS | 35.0% | |
| GCTTATTGAGGATTCAGATT+AGG | - | chr3_1:41063613-41063632 | Msa0357620:CDS | 35.0% | |
| TTGGACTTAGACTAACACTT+GGG | - | chr3_1:41063647-41063666 | Msa0357620:CDS | 35.0% | |
| AGTCTTGAGGATCATAGATA+TGG | - | chr3_1:41063677-41063696 | Msa0357620:CDS | 35.0% | |
| GATTTAACATGTAGTACTGC+AGG | - | chr3_1:41064029-41064048 | Msa0357620:intron | 35.0% | |
| !! | CTGCAGGATTTTTCAAAGTT+TGG | - | chr3_1:41064045-41064064 | Msa0357620:intron | 35.0% |
| ACAAAACCTTCTCTGTGAGA+GGG | + | chr3_1:41061413-41061432 | None:intergenic | 40.0% | |
| CGCGTTAATCTTCAGTTTCA+AGG | - | chr3_1:41061479-41061498 | Msa0357620:three_prime_UTR | 40.0% | |
| GGATTTGAGAGAAAGGAAGA+AGG | + | chr3_1:41061513-41061532 | None:intergenic | 40.0% | |
| AGGAACAATGTCGTCAAAGA+AGG | - | chr3_1:41061676-41061695 | Msa0357620:three_prime_UTR | 40.0% | |
| TGCAACATTTGGAGACGTAT+TGG | - | chr3_1:41061712-41061731 | Msa0357620:intron | 40.0% | |
| CATTTGGAGACGTATTGGAT+TGG | - | chr3_1:41061717-41061736 | Msa0357620:intron | 40.0% | |
| TCCACAATGTGCCAATATTC+GGG | + | chr3_1:41061769-41061788 | None:intergenic | 40.0% | |
| GAAGAAGCTTATTCATGTCG+CGG | - | chr3_1:41061787-41061806 | Msa0357620:intron | 40.0% | |
| GATAGGTATGGTGAACGAAT+AGG | + | chr3_1:41061898-41061917 | None:intergenic | 40.0% | |
| TACCACGTTTACGATAGGTA+TGG | + | chr3_1:41061910-41061929 | None:intergenic | 40.0% | |
| ! | TGGATTAGGTTTGTCACTTG+TGG | - | chr3_1:41062014-41062033 | Msa0357620:intron | 40.0% |
| ! | GGATTAGGTTTGTCACTTGT+GGG | - | chr3_1:41062015-41062034 | Msa0357620:intron | 40.0% |
| ! | TGTGGTATAGGCCTTTTAAC+TGG | - | chr3_1:41062051-41062070 | Msa0357620:intron | 40.0% |
| ! | CTTGGTTGAGTTGTTTCGTT+AGG | - | chr3_1:41062110-41062129 | Msa0357620:intron | 40.0% |
| ! | TGGTTGAGTTGTTTCGTTAG+GGG | - | chr3_1:41062112-41062131 | Msa0357620:intron | 40.0% |
| TATTCCTGGAAGTGGTTCTT+CGG | - | chr3_1:41062260-41062279 | Msa0357620:intron | 40.0% | |
| AAAGGGAGTGGCAATGATTA+GGG | + | chr3_1:41062292-41062311 | None:intergenic | 40.0% | |
| TAAAGGGAGTGGCAATGATT+AGG | + | chr3_1:41062293-41062312 | None:intergenic | 40.0% | |
| AAACACTTCCCACAGAGAAT+TGG | + | chr3_1:41062332-41062351 | None:intergenic | 40.0% | |
| !!! | TTCTCTGTGGGAAGTGTTTT+TGG | - | chr3_1:41062333-41062352 | Msa0357620:intron | 40.0% |
| !! | TCTGTAGTTAGTCTTGTCTG+GGG | - | chr3_1:41062418-41062437 | Msa0357620:intron | 40.0% |
| ! | GTCCTCCGAGATTTTTCTTT+TGG | - | chr3_1:41062450-41062469 | Msa0357620:intron | 40.0% |
| TGTTTCCTAATCTTGAGGTG+CGG | - | chr3_1:41062479-41062498 | Msa0357620:intron | 40.0% | |
| AAAATCCGCACCTCAAGATT+AGG | + | chr3_1:41062487-41062506 | None:intergenic | 40.0% | |
| !!! | GGCCAAGTATTTTGATGATG+AGG | - | chr3_1:41062721-41062740 | Msa0357620:intron | 40.0% |
| TGTCTTGAGGAAGATACTCA+AGG | - | chr3_1:41062754-41062773 | Msa0357620:intron | 40.0% | |
| GTCTTGAGGAAGATACTCAA+GGG | - | chr3_1:41062755-41062774 | Msa0357620:intron | 40.0% | |
| TCTTGAGGAAGATACTCAAG+GGG | - | chr3_1:41062756-41062775 | Msa0357620:intron | 40.0% | |
| TCTGTATATTGTGCTCTGTC+TGG | - | chr3_1:41063469-41063488 | Msa0357620:intron | 40.0% | |
| ATTGAGGATTCAGATTAGGG+TGG | - | chr3_1:41063617-41063636 | Msa0357620:CDS | 40.0% | |
| TTGAGGATTCAGATTAGGGT+GGG | - | chr3_1:41063618-41063637 | Msa0357620:CDS | 40.0% | |
| GTTGGACTTAGACTAACACT+TGG | - | chr3_1:41063646-41063665 | Msa0357620:CDS | 40.0% | |
| CTTGGGACTAAAAAGTCTTG+AGG | - | chr3_1:41063664-41063683 | Msa0357620:CDS | 40.0% | |
| ! | TAATCTTGACTGGCTGAAGA+AGG | + | chr3_1:41063869-41063888 | None:intergenic | 40.0% |
| TTCTTCAGCCAGTCAAGATT+AGG | - | chr3_1:41063868-41063887 | Msa0357620:exon | 40.0% | |
| CCTTAACACCTAATCTTGAC+TGG | + | chr3_1:41063879-41063898 | None:intergenic | 40.0% | |
| CCAGTCAAGATTAGGTGTTA+AGG | - | chr3_1:41063876-41063895 | Msa0357620:intron | 40.0% | |
| !!! | GGTATCTTTTAAAGTAGGGG+TGG | - | chr3_1:41063934-41063953 | Msa0357620:intron | 40.0% |
| ! | TGGTATCTTTTAACGTAGGG+TGG | - | chr3_1:41064065-41064084 | Msa0357620:five_prime_UTR | 40.0% |
| CTGAGTAGTGAGAGGAAATA+TGG | - | chr3_1:41064183-41064202 | Msa0357620:five_prime_UTR | 40.0% | |
| GACAAAACCTTCTCTGTGAG+AGG | + | chr3_1:41061414-41061433 | None:intergenic | 45.0% | |
| !! | GAAGGTTTTGTCCCATTGCT+CGG | - | chr3_1:41061422-41061441 | Msa0357620:three_prime_UTR | 45.0% |
| AAGGTGAAGAGGAAGAGGAA+GGG | - | chr3_1:41061849-41061868 | Msa0357620:intron | 45.0% | |
| ATAGGGAGGCGATACTAAAG+TGG | + | chr3_1:41061880-41061899 | None:intergenic | 45.0% | |
| CACCATACCTATCGTAAACG+TGG | - | chr3_1:41061905-41061924 | Msa0357620:intron | 45.0% | |
| AGCGATACCACGTTTACGAT+AGG | + | chr3_1:41061915-41061934 | None:intergenic | 45.0% | |
| !! | CTTTTCCATGGTGTTTTGGG+CGG | + | chr3_1:41061954-41061973 | None:intergenic | 45.0% |
| !! | TCACTTGTGGGTTAGCGTAT+AGG | - | chr3_1:41062027-41062046 | Msa0357620:intron | 45.0% |
| !! | CACTTGTGGGTTAGCGTATA+GGG | - | chr3_1:41062028-41062047 | Msa0357620:intron | 45.0% |
| TAGCGTATAGGGTGTGGTAT+AGG | - | chr3_1:41062039-41062058 | Msa0357620:intron | 45.0% | |
| ! | TTGAGTTGTTTCGTTAGGGG+TGG | - | chr3_1:41062115-41062134 | Msa0357620:intron | 45.0% |
| ! | TGAGTTGTTTCGTTAGGGGT+GGG | - | chr3_1:41062116-41062135 | Msa0357620:intron | 45.0% |
| ATTGCCACTCCCTTTATGAG+TGG | - | chr3_1:41062297-41062316 | Msa0357620:intron | 45.0% | |
| TTGCCACTCCCTTTATGAGT+GGG | - | chr3_1:41062298-41062317 | Msa0357620:intron | 45.0% | |
| TTTCGCCTCCCACTCATAAA+GGG | + | chr3_1:41062309-41062328 | None:intergenic | 45.0% | |
| AGGCGAAACCAATTCTCTGT+GGG | - | chr3_1:41062321-41062340 | Msa0357620:intron | 45.0% | |
| ! | TTGAGGTGCGGATTTTCTCT+AGG | - | chr3_1:41062491-41062510 | Msa0357620:intron | 45.0% |
| AAGACGTTTCAGTGCATGTC+CGG | - | chr3_1:41062636-41062655 | Msa0357620:intron | 45.0% | |
| TTACACACTTCACGAGGTGA+AGG | - | chr3_1:41062700-41062719 | Msa0357620:intron | 45.0% | |
| TGCAATTTAGCTGTGTAGGG+TGG | - | chr3_1:41063087-41063106 | Msa0357620:intron | 45.0% | |
| GCAATTTAGCTGTGTAGGGT+GGG | - | chr3_1:41063088-41063107 | Msa0357620:intron | 45.0% | |
| TGAGGATTCAGATTAGGGTG+GGG | - | chr3_1:41063619-41063638 | Msa0357620:CDS | 45.0% | |
| !! | AGATTAGGGTGGGGTTTTGT+TGG | - | chr3_1:41063628-41063647 | Msa0357620:CDS | 45.0% |
| TTCTCTGTGAGAGGGTTTCG+CGG | + | chr3_1:41061405-41061424 | None:intergenic | 50.0% | |
| CTCGTTACTCGCCCGAATAT+TGG | - | chr3_1:41061755-41061774 | Msa0357620:intron | 50.0% | |
| GCCCGAATATTGGCACATTG+TGG | - | chr3_1:41061765-41061784 | Msa0357620:intron | 50.0% | |
| GTTGCTTACCTCCTCTCTGA+AGG | - | chr3_1:41061830-41061849 | Msa0357620:intron | 50.0% | |
| CTTCCTCTTCACCTTCAGAG+AGG | + | chr3_1:41061844-41061863 | None:intergenic | 50.0% | |
| ! | CTCTGAAGGTGAAGAGGAAG+AGG | - | chr3_1:41061844-41061863 | Msa0357620:intron | 50.0% |
| GAAGGTGAAGAGGAAGAGGA+AGG | - | chr3_1:41061848-41061867 | Msa0357620:intron | 50.0% | |
| GGTATGGTGAACGAATAGGG+AGG | + | chr3_1:41061894-41061913 | None:intergenic | 50.0% | |
| CGCCCAAAACACCATGGAAA+AGG | - | chr3_1:41061952-41061971 | Msa0357620:intron | 50.0% | |
| TTGTTTCGTTAGGGGTGGGA+AGG | - | chr3_1:41062120-41062139 | Msa0357620:intron | 50.0% | |
| TTCACCGAAGAACCACTTCC+AGG | + | chr3_1:41062267-41062286 | None:intergenic | 50.0% | |
| GTTTCGCCTCCCACTCATAA+AGG | + | chr3_1:41062310-41062329 | None:intergenic | 50.0% | |
| GAGGCGAAACCAATTCTCTG+TGG | - | chr3_1:41062320-41062339 | Msa0357620:intron | 50.0% | |
| GGTTCTCTCTACCTTGAGAC+CGG | - | chr3_1:41062512-41062531 | Msa0357620:intron | 50.0% | |
| AAGGTCTGTACAACAGCTGC+CGG | + | chr3_1:41062534-41062553 | None:intergenic | 50.0% | |
| AAGAGCAACTCTGCAGCTCT+TGG | - | chr3_1:41062659-41062678 | Msa0357620:intron | 50.0% | |
| !! | GATGGGTTACACACTTCACG+AGG | - | chr3_1:41062694-41062713 | Msa0357620:intron | 50.0% |
| AGGAGGACGCTATTGTCTTG+AGG | - | chr3_1:41062741-41062760 | Msa0357620:intron | 50.0% | |
| TGGAAAAAGATGGGGGGAGT+GGG | + | chr3_1:41062808-41062827 | None:intergenic | 50.0% | |
| ATGGAAAAAGATGGGGGGAG+TGG | + | chr3_1:41062809-41062828 | None:intergenic | 50.0% | |
| TCAAACATGGATTCTCCCGC+AGG | - | chr3_1:41063833-41063852 | Msa0357620:CDS | 50.0% | |
| !! | AGTGAGTGCTGAGTAGTGAG+AGG | - | chr3_1:41064175-41064194 | Msa0357620:five_prime_UTR | 50.0% |
| GCGAAACCCTCTCACAGAGA+AGG | - | chr3_1:41061404-41061423 | Msa0357620:three_prime_UTR | 55.0% | |
| GTGGATCTGCTCCGAGCAAT+GGG | + | chr3_1:41061436-41061455 | None:intergenic | 55.0% | |
| AGATTAACGCGGCGACCGTA+CGG | + | chr3_1:41061470-41061489 | None:intergenic | 55.0% | |
| CATGTCGCGGACAATTGCAG+CGG | - | chr3_1:41061800-41061819 | Msa0357620:intron | 55.0% | |
| CCTCTTCACCTTCAGAGAGG+AGG | + | chr3_1:41061841-41061860 | None:intergenic | 55.0% | |
| ! | CCTCCTCTCTGAAGGTGAAG+AGG | - | chr3_1:41061838-41061857 | Msa0357620:intron | 55.0% |
| !! | TTCCATGGTGTTTTGGGCGG+CGG | + | chr3_1:41061951-41061970 | None:intergenic | 55.0% |
| !! | GTGGGTTAGCGTATAGGGTG+TGG | - | chr3_1:41062033-41062052 | Msa0357620:intron | 55.0% |
| CCTCCCACTCATAAAGGGAG+TGG | + | chr3_1:41062304-41062323 | None:intergenic | 55.0% | |
| CCACTCCCTTTATGAGTGGG+AGG | - | chr3_1:41062301-41062320 | Msa0357620:intron | 55.0% | |
| !! | GTCTTGTCTGGGGAGTGTTC+TGG | - | chr3_1:41062428-41062447 | Msa0357620:intron | 55.0% |
| TACAACAGCTGCCGGTCTCA+AGG | + | chr3_1:41062526-41062545 | None:intergenic | 55.0% | |
| GAGCTGCAGAGTTGCTCTTC+CGG | + | chr3_1:41062658-41062677 | None:intergenic | 55.0% | |
| GAGTGGGTCTCACAGTTAGG+TGG | + | chr3_1:41062792-41062811 | None:intergenic | 55.0% | |
| AACATGGATTCTCCCGCAGG+AGG | - | chr3_1:41063836-41063855 | Msa0357620:CDS | 55.0% | |
| AGAAGGTCTTCCTCCTCCTG+CGG | + | chr3_1:41063852-41063871 | None:intergenic | 55.0% | |
| GGTGGATCTGCTCCGAGCAA+TGG | + | chr3_1:41061437-41061456 | None:intergenic | 60.0% | |
| TCGGAGCAGATCCACCGTGT+CGG | - | chr3_1:41061441-41061460 | Msa0357620:three_prime_UTR | 60.0% | |
| TAGGGGTGGGAAGGCAGAGT+AGG | - | chr3_1:41062129-41062148 | Msa0357620:intron | 60.0% | |
| GTGGGAAGGCAGAGTAGGCT+AGG | - | chr3_1:41062134-41062153 | Msa0357620:intron | 60.0% | |
| GGGGAGTGGGTCTCACAGTT+AGG | + | chr3_1:41062795-41062814 | None:intergenic | 60.0% | |
| GTGGGCGTGAGGTCAGACTT+TGG | - | chr3_1:41063106-41063125 | Msa0357620:intron | 60.0% | |
| ATGGATTCTCCCGCAGGAGG+AGG | - | chr3_1:41063839-41063858 | Msa0357620:CDS | 60.0% | |
| GAAGGTCTTCCTCCTCCTGC+GGG | + | chr3_1:41063851-41063870 | None:intergenic | 60.0% | |
| GAGCAGATCCACCGTGTCGG+AGG | - | chr3_1:41061444-41061463 | Msa0357620:three_prime_UTR | 65.0% | |
| CACCGCCGCCCAAAACACCA+TGG | - | chr3_1:41061946-41061965 | Msa0357620:intron | 65.0% | |
| AGCTGTGTAGGGTGGGCGTG+AGG | - | chr3_1:41063095-41063114 | Msa0357620:intron | 65.0% | |
| CCACCGTGTCGGAGGCCGTA+CGG | - | chr3_1:41061452-41061471 | Msa0357620:three_prime_UTR | 70.0% | |
| CGACCGTACGGCCTCCGACA+CGG | + | chr3_1:41061458-41061477 | None:intergenic | 70.0% | |
| CCGTACGGCCTCCGACACGG+TGG | + | chr3_1:41061455-41061474 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 41061353 | 41064206 | 41061353 | ID=Msa0357620;Name=Msa0357620 |
| chr3_1 | mRNA | 41061353 | 41064206 | 41061353 | ID=Msa0357620-mRNA-1;Parent=Msa0357620;Name=Msa0357620-mRNA-1;_AED=0.11;_eAED=0.11;_QI=161|1|1|1|0.2|0|6|297|153 |
| chr3_1 | exon | 41061353 | 41061520 | 41061353 | ID=Msa0357620-mRNA-1:exon:7159;Parent=Msa0357620-mRNA-1 |
| chr3_1 | exon | 41061581 | 41061647 | 41061581 | ID=Msa0357620-mRNA-1:exon:7158;Parent=Msa0357620-mRNA-1 |
| chr3_1 | exon | 41061670 | 41061729 | 41061670 | ID=Msa0357620-mRNA-1:exon:7157;Parent=Msa0357620-mRNA-1 |
| chr3_1 | exon | 41062761 | 41062933 | 41062761 | ID=Msa0357620-mRNA-1:exon:7156;Parent=Msa0357620-mRNA-1 |
| chr3_1 | exon | 41063586 | 41063888 | 41063586 | ID=Msa0357620-mRNA-1:exon:7155;Parent=Msa0357620-mRNA-1 |
| chr3_1 | exon | 41064058 | 41064206 | 41064058 | ID=Msa0357620-mRNA-1:exon:7154;Parent=Msa0357620-mRNA-1 |
| chr3_1 | five_prime_UTR | 41064058 | 41064206 | 41064058 | ID=Msa0357620-mRNA-1:five_prime_utr;Parent=Msa0357620-mRNA-1 |
| chr3_1 | five_prime_UTR | 41063877 | 41063888 | 41063877 | ID=Msa0357620-mRNA-1:five_prime_utr;Parent=Msa0357620-mRNA-1 |
| chr3_1 | CDS | 41063586 | 41063876 | 41063586 | ID=Msa0357620-mRNA-1:cds;Parent=Msa0357620-mRNA-1 |
| chr3_1 | CDS | 41062763 | 41062933 | 41062763 | ID=Msa0357620-mRNA-1:cds;Parent=Msa0357620-mRNA-1 |
| chr3_1 | three_prime_UTR | 41062761 | 41062762 | 41062761 | ID=Msa0357620-mRNA-1:three_prime_utr;Parent=Msa0357620-mRNA-1 |
| chr3_1 | three_prime_UTR | 41061670 | 41061729 | 41061670 | ID=Msa0357620-mRNA-1:three_prime_utr;Parent=Msa0357620-mRNA-1 |
| chr3_1 | three_prime_UTR | 41061581 | 41061647 | 41061581 | ID=Msa0357620-mRNA-1:three_prime_utr;Parent=Msa0357620-mRNA-1 |
| chr3_1 | three_prime_UTR | 41061353 | 41061520 | 41061353 | ID=Msa0357620-mRNA-1:three_prime_utr;Parent=Msa0357620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
