Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0355980 | XP_013459455.1 | 99.231 | 260 | 2 | 0 | 1 | 260 | 1 | 260 | 0.0 | 512 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0355980 | sp|Q8LC68|NRP2_ARATH | 74.324 | 222 | 54 | 2 | 1 | 221 | 1 | 220 | 4.38e-117 | 338 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0355980 | B7FJS4 | 99.231 | 260 | 2 | 0 | 1 | 260 | 1 | 260 | 0.0 | 512 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0355980 | Msa0571630 | 0.811621 | 6.388455e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0355980 | MtrunA17_Chr3g0092521 | 99.231 | 260 | 2 | 0 | 1 | 260 | 1 | 260 | 0.0 | 512 |
| Msa0355980 | MtrunA17_Chr4g0060621 | 76.923 | 221 | 48 | 1 | 1 | 221 | 1 | 218 | 2.52e-124 | 354 |
| Msa0355980 | MtrunA17_Chr4g0064221 | 50.000 | 240 | 105 | 3 | 3 | 232 | 100 | 334 | 1.06e-77 | 239 |
| Msa0355980 | MtrunA17_Chr6g0487861 | 47.059 | 85 | 44 | 1 | 60 | 143 | 2 | 86 | 1.20e-22 | 89.0 |
| Msa0355980 | MtrunA17_Chr6g0487691 | 47.059 | 85 | 44 | 1 | 60 | 143 | 2 | 86 | 1.20e-22 | 89.0 |
| Msa0355980 | MtrunA17_Chr6g0487501 | 39.552 | 134 | 68 | 3 | 88 | 209 | 23 | 155 | 3.51e-21 | 87.0 |
| Msa0355980 | MtrunA17_Chr2g0299511 | 22.857 | 245 | 130 | 7 | 29 | 222 | 14 | 250 | 1.23e-11 | 63.5 |
| Msa0355980 | MtrunA17_Chr2g0299521 | 29.655 | 145 | 78 | 4 | 29 | 163 | 55 | 185 | 4.82e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0355980 | AT1G18800.1 | 73.778 | 225 | 51 | 3 | 1 | 221 | 1 | 221 | 1.46e-116 | 334 |
| Msa0355980 | AT1G74560.1 | 71.983 | 232 | 58 | 3 | 20 | 249 | 22 | 248 | 4.61e-108 | 313 |
| Msa0355980 | AT1G74560.3 | 77.949 | 195 | 41 | 2 | 20 | 212 | 22 | 216 | 4.97e-108 | 313 |
Find 89 sgRNAs with CRISPR-Local
Find 252 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTATTTATTGTCTGATTTC+TGG | 0.105987 | 3_1:-31640878 | Msa0355980:three_prime_UTR |
| GAGTATCTTAGTGGTCTTTA+AGG | 0.147195 | 3_1:-31640952 | Msa0355980:three_prime_UTR |
| TCAAGTCCATTCCCGATTTC+TGG | 0.148537 | 3_1:-31644373 | Msa0355980:CDS |
| AAATGATCAAGGATGATTTA+TGG | 0.278723 | 3_1:-31642351 | Msa0355980:CDS |
| TCATCCTCCTCTGCTTCATC+AGG | 0.316616 | 3_1:+31642192 | None:intergenic |
| TCTCTCCATTGAAAAGTTGC+AGG | 0.343507 | 3_1:-31645107 | Msa0355980:CDS |
| TTACCGCCACACCCATAAAA+TGG | 0.350698 | 3_1:-31643186 | Msa0355980:CDS |
| CAGAAATCAGACAATAAATA+AGG | 0.351398 | 3_1:+31640879 | None:intergenic |
| AGCGAGCTGCTTCTGATATC+AGG | 0.360649 | 3_1:-31642998 | Msa0355980:intron |
| ACTACTATATGGTTCAATAT+AGG | 0.372095 | 3_1:+31640797 | None:intergenic |
| TACCGCAGTTAGCCAGAAAT+CGG | 0.377960 | 3_1:+31644361 | None:intergenic |
| TTGAAATAATTGAGTGGATT+CGG | 0.381061 | 3_1:+31642328 | None:intergenic |
| AGTATCTTAGTGGTCTTTAA+GGG | 0.385803 | 3_1:-31640951 | Msa0355980:three_prime_UTR |
| TTCTCATGACTAACTCCATT+GGG | 0.391028 | 3_1:+31643032 | None:intergenic |
| GCGTGAATGAGGGAAGTGTT+AGG | 0.399048 | 3_1:+31645277 | None:intergenic |
| GAAGTTGAAAGTTTCTGAAA+AGG | 0.400020 | 3_1:-31645164 | Msa0355980:CDS |
| GATAAAATCCGATGTATCAT+TGG | 0.406601 | 3_1:+31640825 | None:intergenic |
| TGCTTTAAAATAGCAATACT+TGG | 0.414805 | 3_1:-31641006 | Msa0355980:three_prime_UTR |
| GATCATAAAGATGTTAAATC+AGG | 0.415444 | 3_1:-31643435 | Msa0355980:CDS |
| CCCTAGCGCAGGGGAGAGAT+TGG | 0.416954 | 3_1:+31645239 | None:intergenic |
| AAGTTGAAAGTTTCTGAAAA+GGG | 0.417210 | 3_1:-31645163 | Msa0355980:CDS |
| CACTGAGCAGAAAGATGAAA+TGG | 0.419218 | 3_1:-31642541 | Msa0355980:CDS |
| GAAAGACCAAGGTTGGCTAT+TGG | 0.423156 | 3_1:-31640923 | Msa0355980:three_prime_UTR |
| TTTCAACTTCTTAGACTTGT+CGG | 0.425948 | 3_1:+31645177 | None:intergenic |
| GCTTTGTGGTTCCTTCTTCA+AGG | 0.438706 | 3_1:+31643209 | None:intergenic |
| CTTCTCATGACTAACTCCAT+TGG | 0.461543 | 3_1:+31643031 | None:intergenic |
| TTCAAGAGATCACCAAGAAC+AGG | 0.466713 | 3_1:+31644208 | None:intergenic |
| ACCTTCTGTTTCTTCAACCA+TGG | 0.467231 | 3_1:-31645203 | Msa0355980:exon |
| TTGAAGAAACAGAAGGTGTT+GGG | 0.469510 | 3_1:+31645209 | None:intergenic |
| CGTGAATGAGGGAAGTGTTA+GGG | 0.473720 | 3_1:+31645278 | None:intergenic |
| AGCAGAAGTACAATGAAGTA+AGG | 0.474420 | 3_1:-31644427 | Msa0355980:CDS |
| ATGAATGCAGTTTCTTTACC+TGG | 0.476177 | 3_1:-31642572 | Msa0355980:intron |
| TTATTATAGGAGTATCTTAG+TGG | 0.477899 | 3_1:-31640961 | Msa0355980:three_prime_UTR |
| GGGTGTGGCGGTAAGCTTTG+TGG | 0.488698 | 3_1:+31643195 | None:intergenic |
| AAATAAGGTTTACGCCCAAA+GGG | 0.488877 | 3_1:+31640894 | None:intergenic |
| TAACAACGGTGCGCGCGTGC+GGG | 0.489280 | 3_1:+31645348 | None:intergenic |
| CTAACAACGGTGCGCGCGTG+CGG | 0.503839 | 3_1:+31645347 | None:intergenic |
| GTACAATGAAGTAAGGAAAC+CGG | 0.504777 | 3_1:-31644420 | Msa0355980:CDS |
| GAGTTAGTCATGAGAAGAAA+GGG | 0.511551 | 3_1:-31643025 | Msa0355980:CDS |
| TAAGCATTTAATCTCTCTTG+AGG | 0.513660 | 3_1:-31643463 | Msa0355980:CDS |
| GGAGTTAGTCATGAGAAGAA+AGG | 0.520004 | 3_1:-31643026 | Msa0355980:CDS |
| GTTGAAGAAACAGAAGGTGT+TGG | 0.520095 | 3_1:+31645208 | None:intergenic |
| CTGCTCAGTGTCACAAAACC+AGG | 0.520786 | 3_1:+31642554 | None:intergenic |
| ACCAATCTCTCCCCTGCGCT+AGG | 0.524399 | 3_1:-31645240 | Msa0355980:five_prime_UTR |
| TGGGTTTCAAACCCTAGCGC+AGG | 0.524947 | 3_1:+31645228 | None:intergenic |
| TAAATAAGGTTTACGCCCAA+AGG | 0.532363 | 3_1:+31640893 | None:intergenic |
| CACACCCATAAAATGGAAAG+AGG | 0.533883 | 3_1:-31643179 | Msa0355980:CDS |
| ACCGCAGTTAGCCAGAAATC+GGG | 0.534071 | 3_1:+31644362 | None:intergenic |
| TGTGGTTCCTTCTTCAAGGA+AGG | 0.535667 | 3_1:+31643213 | None:intergenic |
| AATTCAAGATGAGATTGAAA+AGG | 0.541675 | 3_1:-31645083 | Msa0355980:intron |
| GGATGATGAAAGACCAAGGT+TGG | 0.555399 | 3_1:-31640930 | Msa0355980:three_prime_UTR |
| CCAATCTCTCCCCTGCGCTA+GGG | 0.555555 | 3_1:-31645239 | Msa0355980:five_prime_UTR |
| CTTAGACTTGTCGGCCACCA+TGG | 0.561301 | 3_1:+31645186 | None:intergenic |
| CATCCTCCTCTGCTTCATCA+GGG | 0.561342 | 3_1:+31642193 | None:intergenic |
| GGGTTTCAAACCCTAGCGCA+GGG | 0.566519 | 3_1:+31645229 | None:intergenic |
| GCATTTAATCTCTCTTGAGG+TGG | 0.569987 | 3_1:-31643460 | Msa0355980:CDS |
| CTTGAATGAAGAAGATCAGA+AGG | 0.578793 | 3_1:-31644191 | Msa0355980:intron |
| GTGTTCTTCGAGCGTGAATG+AGG | 0.579285 | 3_1:+31645266 | None:intergenic |
| AACATGAAGGGCATTCCCAA+TGG | 0.580353 | 3_1:-31643047 | Msa0355980:intron |
| GGACCCTGATGAAGCAGAGG+AGG | 0.584391 | 3_1:-31642196 | Msa0355980:CDS |
| CATAAAATGGAAAGAGGGCA+AGG | 0.586031 | 3_1:-31643173 | Msa0355980:intron |
| GTAGATTGCTGAAATGATCA+AGG | 0.588612 | 3_1:-31642362 | Msa0355980:intron |
| TTCTGTTTCTTCAACCATGG+TGG | 0.589035 | 3_1:-31645200 | Msa0355980:exon |
| TAAAGATACCAATGATACAT+CGG | 0.597055 | 3_1:-31640833 | Msa0355980:three_prime_UTR |
| ACTGAGCAGAAAGATGAAAT+GGG | 0.600309 | 3_1:-31642540 | Msa0355980:CDS |
| GGAAAACCAATAGCCAACCT+TGG | 0.610576 | 3_1:+31640917 | None:intergenic |
| AATAAGGTTTACGCCCAAAG+GGG | 0.612679 | 3_1:+31640895 | None:intergenic |
| TGAAGATGATGATGATCAAG+AGG | 0.613053 | 3_1:-31641065 | Msa0355980:CDS |
| AGAGGATGACGACGATGACG+AGG | 0.613787 | 3_1:-31641047 | Msa0355980:CDS |
| GGAGGACCCTGATGAAGCAG+AGG | 0.616842 | 3_1:-31642199 | Msa0355980:CDS |
| TCATTGCGCTTGTCATACAC+CGG | 0.617462 | 3_1:+31644401 | None:intergenic |
| GAGGAGGATGATGATGAAGC+TGG | 0.618117 | 3_1:-31642180 | Msa0355980:CDS |
| TGTTCTTCGAGCGTGAATGA+GGG | 0.619163 | 3_1:+31645267 | None:intergenic |
| CTATCTTAGACCATGTACAA+TGG | 0.628309 | 3_1:+31645410 | None:intergenic |
| AGTTAGCCAGAAATCGGGAA+TGG | 0.630002 | 3_1:+31644367 | None:intergenic |
| ACACCCATAAAATGGAAAGA+GGG | 0.634604 | 3_1:-31643178 | Msa0355980:CDS |
| ATAAGGTTTACGCCCAAAGG+GGG | 0.649454 | 3_1:+31640896 | None:intergenic |
| ACACTGTTGAAATAATTGAG+TGG | 0.653111 | 3_1:+31642322 | None:intergenic |
| TCCCGATTTCTGGCTAACTG+CGG | 0.657384 | 3_1:-31644363 | Msa0355980:intron |
| ATTCTGGTTCCAGATCAATG+AGG | 0.670741 | 3_1:-31644477 | Msa0355980:intron |
| CTGGTTCCAGATCAATGAGG+AGG | 0.676173 | 3_1:-31644474 | Msa0355980:intron |
| TAAGGGATGATGAAAGACCA+AGG | 0.677834 | 3_1:-31640934 | Msa0355980:three_prime_UTR |
| GGTTTCAAACCCTAGCGCAG+GGG | 0.680113 | 3_1:+31645230 | None:intergenic |
| GAGAACGCTGAGGAGATCGA+CGG | 0.680614 | 3_1:-31645139 | Msa0355980:CDS |
| AGAGATCACCAAGAACAGGA+TGG | 0.685499 | 3_1:+31644212 | None:intergenic |
| AATGGGTGACATTCATGATG+AGG | 0.701668 | 3_1:-31642523 | Msa0355980:intron |
| TGAAAAGGGTGAGAACGCTG+AGG | 0.720444 | 3_1:-31645149 | Msa0355980:CDS |
| TGATGATGAAGCTGGTGATG+CGG | 0.730644 | 3_1:-31642172 | Msa0355980:intron |
| ACCATGGTTGAAGAAACAGA+AGG | 0.734429 | 3_1:+31645202 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATATCTACAAAAATAAA+TGG | + | chr3_1:31642693-31642712 | None:intergenic | 10.0% |
| !! | AAAAAATAAACAAAATGAAA+AGG | + | chr3_1:31643073-31643092 | None:intergenic | 10.0% |
| !! | ATAAAAAGGAAAAAAATTAA+TGG | + | chr3_1:31644039-31644058 | None:intergenic | 10.0% |
| !! | TATATTTAATTATAAATGCA+AGG | + | chr3_1:31645009-31645028 | None:intergenic | 10.0% |
| !!! | ATTTATTTTAAGGTTATTAT+AGG | - | chr3_1:31645200-31645219 | Msa0355980:exon | 10.0% |
| !! | AGAAACAAATAATGAAAAAT+TGG | + | chr3_1:31641120-31641139 | None:intergenic | 15.0% |
| !! | TAAAATGTAATTAAACTTAG+TGG | - | chr3_1:31641213-31641232 | Msa0355980:intron | 15.0% |
| !!! | GTAAATTTTAGTTAAGTAAA+TGG | - | chr3_1:31641403-31641422 | Msa0355980:intron | 15.0% |
| !!! | GTTTCTTTATGTTTTAATTT+TGG | - | chr3_1:31641844-31641863 | Msa0355980:intron | 15.0% |
| !! | TCAAGATTAAAATCTTAAAT+TGG | + | chr3_1:31642595-31642614 | None:intergenic | 15.0% |
| !!! | TTGTATTTTGCTTAAATTAA+AGG | - | chr3_1:31642850-31642869 | Msa0355980:intron | 15.0% |
| !! | AATTAATTATTTGTTCCATT+TGG | + | chr3_1:31643571-31643590 | None:intergenic | 15.0% |
| !!! | ATACAATTGTTTTCTAAAAT+TGG | - | chr3_1:31644444-31644463 | Msa0355980:CDS | 15.0% |
| !! | ATATACATGTATAGATATTA+TGG | - | chr3_1:31645024-31645043 | Msa0355980:intron | 15.0% |
| !! | AAAATAAAACTTCTGTATGT+TGG | + | chr3_1:31641317-31641336 | None:intergenic | 20.0% |
| !!! | AATATCCATAATTTCCTTTT+TGG | + | chr3_1:31641605-31641624 | None:intergenic | 20.0% |
| !! | AGGAAATTATGGATATTTAT+AGG | - | chr3_1:31641608-31641627 | Msa0355980:intron | 20.0% |
| !! | GGAAATTATGGATATTTATA+GGG | - | chr3_1:31641609-31641628 | Msa0355980:intron | 20.0% |
| !!! | AATGCAATTTAATTTGATTC+TGG | - | chr3_1:31641681-31641700 | Msa0355980:intron | 20.0% |
| !! | TTTAACAACACAATAACTAA+CGG | + | chr3_1:31641888-31641907 | None:intergenic | 20.0% |
| !!! | TTCTTTTTCATATAAAGTTC+TGG | + | chr3_1:31642081-31642100 | None:intergenic | 20.0% |
| !! | TCAAACAATATTCTAAGTAA+TGG | + | chr3_1:31642156-31642175 | None:intergenic | 20.0% |
| !!! | TGATAAAGTTCACTTTTAAA+CGG | + | chr3_1:31642323-31642342 | None:intergenic | 20.0% |
| !!! | TGATTCATTATGAAGTATTT+TGG | - | chr3_1:31642396-31642415 | Msa0355980:intron | 20.0% |
| !! | AACATTATCTTTAAACATGA+AGG | - | chr3_1:31643114-31643133 | Msa0355980:intron | 20.0% |
| !! | ACATTATCTTTAAACATGAA+GGG | - | chr3_1:31643115-31643134 | Msa0355980:intron | 20.0% |
| !! | CAAACATATAAAACTAGTAA+AGG | + | chr3_1:31643299-31643318 | None:intergenic | 20.0% |
| !!! | ATCACAAGTTTTTCATAAAA+AGG | + | chr3_1:31644053-31644072 | None:intergenic | 20.0% |
| !! | TTAAGAGTTATGAATAGATT+GGG | + | chr3_1:31644515-31644534 | None:intergenic | 20.0% |
| !! | TAACCTGAACATTTATATTA+AGG | + | chr3_1:31644685-31644704 | None:intergenic | 20.0% |
| !!! | ATGTTTTTAACCATTGTACA+TGG | - | chr3_1:31640754-31640773 | Msa0355980:three_prime_UTR | 25.0% |
| !! | AAGTTGAAAGTTTCTGAAAA+GGG | - | chr3_1:31641011-31641030 | Msa0355980:three_prime_UTR | 25.0% |
| ! | AATTCAAGATGAGATTGAAA+AGG | - | chr3_1:31641091-31641110 | Msa0355980:intron | 25.0% |
| ! | TAAATTGAATTCTACAACAG+AGG | + | chr3_1:31641183-31641202 | None:intergenic | 25.0% |
| ! | AACTTAGTGGAATCAAATTA+TGG | - | chr3_1:31641226-31641245 | Msa0355980:intron | 25.0% |
| ! | ACTTAGTGGAATCAAATTAT+GGG | - | chr3_1:31641227-31641246 | Msa0355980:intron | 25.0% |
| ! | GATAAATGTTGGATATTCAT+AGG | + | chr3_1:31641431-31641450 | None:intergenic | 25.0% |
| !!! | TTTTTTTTCATCTGCGTTTT+TGG | - | chr3_1:31641526-31641545 | Msa0355980:intron | 25.0% |
| !! | TTTTGGTAGGAAAATGTAAT+CGG | - | chr3_1:31641543-31641562 | Msa0355980:intron | 25.0% |
| !!! | TTTTTTTGCATAGACCAAAA+AGG | - | chr3_1:31641588-31641607 | Msa0355980:intron | 25.0% |
| ! | ATAGACCAAAAAGGAAATTA+TGG | - | chr3_1:31641597-31641616 | Msa0355980:intron | 25.0% |
| !!! | TTTGGTTTTGTTTTTATCGT+TGG | - | chr3_1:31641862-31641881 | Msa0355980:intron | 25.0% |
| !! | ATTCCTATGTGTATCTATTT+TGG | - | chr3_1:31642343-31642362 | Msa0355980:CDS | 25.0% |
| ! | AAATCAAATGAGAAGAAAAG+TGG | + | chr3_1:31642461-31642480 | None:intergenic | 25.0% |
| ! | GATCATAAAGATGTTAAATC+AGG | - | chr3_1:31642739-31642758 | Msa0355980:intron | 25.0% |
| !!! | AGTTTTGAATCCTCAAAAAA+GGG | + | chr3_1:31642927-31642946 | None:intergenic | 25.0% |
| !!! | AAGTTTTGAATCCTCAAAAA+AGG | + | chr3_1:31642928-31642947 | None:intergenic | 25.0% |
| ! | AAAATGAAAAGGAGAAAAAG+TGG | + | chr3_1:31643062-31643081 | None:intergenic | 25.0% |
| ! | ACTTTCTATTTAAACACTAG+AGG | + | chr3_1:31643251-31643270 | None:intergenic | 25.0% |
| !! | TTGTTGTTCATGTATAAGTT+GGG | - | chr3_1:31643324-31643343 | Msa0355980:intron | 25.0% |
| !! | TGTTATTTATTTCACGAGTA+AGG | - | chr3_1:31643424-31643443 | Msa0355980:CDS | 25.0% |
| ! | TATATTTCAATAACCCAACT+AGG | + | chr3_1:31643504-31643523 | None:intergenic | 25.0% |
| ! | AAATGATCAAGGATGATTTA+TGG | - | chr3_1:31643823-31643842 | Msa0355980:intron | 25.0% |
| !! | TTGAAATAATTGAGTGGATT+CGG | + | chr3_1:31643849-31643868 | None:intergenic | 25.0% |
| ! | TATTTGAAAACACTGGTATT+AGG | + | chr3_1:31644307-31644326 | None:intergenic | 25.0% |
| ! | TAACCAACAAGTAAGTTTAA+GGG | + | chr3_1:31644484-31644503 | None:intergenic | 25.0% |
| ! | TTAACCAACAAGTAAGTTTA+AGG | + | chr3_1:31644485-31644504 | None:intergenic | 25.0% |
| ! | GTTAAGAGTTATGAATAGAT+TGG | + | chr3_1:31644516-31644535 | None:intergenic | 25.0% |
| ! | GTTTATAAAACTAGATATGC+AGG | + | chr3_1:31644575-31644594 | None:intergenic | 25.0% |
| ! | TTATAAAACTAGATGTAGGT+GGG | + | chr3_1:31644617-31644636 | None:intergenic | 25.0% |
| ! | TTTATAAAACTAGATGTAGG+TGG | + | chr3_1:31644618-31644637 | None:intergenic | 25.0% |
| ! | CAGTTTATAAAACTAGATGT+AGG | + | chr3_1:31644621-31644640 | None:intergenic | 25.0% |
| ! | CCATATATCTAGACATATAA+TGG | + | chr3_1:31644652-31644671 | None:intergenic | 25.0% |
| ! | CCATTATATGTCTAGATATA+TGG | - | chr3_1:31644649-31644668 | Msa0355980:intron | 25.0% |
| ! | TCTCCTTAATATAAATGTTC+AGG | - | chr3_1:31644679-31644698 | Msa0355980:intron | 25.0% |
| ! | GAATTGACTAATTGAGAATA+GGG | + | chr3_1:31644732-31644751 | None:intergenic | 25.0% |
| ! | AGAATTGACTAATTGAGAAT+AGG | + | chr3_1:31644733-31644752 | None:intergenic | 25.0% |
| ! | CAAAAGTTCAATAAACAGAT+TGG | + | chr3_1:31644984-31645003 | None:intergenic | 25.0% |
| !!! | TGCTTTAAAATAGCAATACT+TGG | - | chr3_1:31645168-31645187 | Msa0355980:CDS | 25.0% |
| !!! | TTATTATAGGAGTATCTTAG+TGG | - | chr3_1:31645213-31645232 | Msa0355980:five_prime_UTR | 25.0% |
| ! | CAGAAATCAGACAATAAATA+AGG | + | chr3_1:31645298-31645317 | None:intergenic | 25.0% |
| ! | CTTATTTATTGTCTGATTTC+TGG | - | chr3_1:31645296-31645315 | Msa0355980:five_prime_UTR | 25.0% |
| ! | TAAAGATACCAATGATACAT+CGG | - | chr3_1:31645341-31645360 | Msa0355980:five_prime_UTR | 25.0% |
| ! | ACTACTATATGGTTCAATAT+AGG | + | chr3_1:31645380-31645399 | None:intergenic | 25.0% |
| !!! | ACTGCATTTTAACTACTATA+TGG | + | chr3_1:31645391-31645410 | None:intergenic | 25.0% |
| TTTCAACTTCTTAGACTTGT+CGG | + | chr3_1:31641000-31641019 | None:intergenic | 30.0% | |
| ! | GAAGTTGAAAGTTTCTGAAA+AGG | - | chr3_1:31641010-31641029 | Msa0355980:three_prime_UTR | 30.0% |
| ! | AATTTCCTGCAACTTTTCAA+TGG | + | chr3_1:31641075-31641094 | None:intergenic | 30.0% |
| CTTAGTGGAATCAAATTATG+GGG | - | chr3_1:31641228-31641247 | Msa0355980:intron | 30.0% | |
| ! | CTAAAAAGTGCGATAAATGT+TGG | + | chr3_1:31641442-31641461 | None:intergenic | 30.0% |
| TACTACATGACTAAAAGTTC+TGG | + | chr3_1:31641487-31641506 | None:intergenic | 30.0% | |
| CAGAATTCAGATCAAGTAAT+AGG | + | chr3_1:31641636-31641655 | None:intergenic | 30.0% | |
| GAATAGCTATGGTAAAGTTA+TGG | + | chr3_1:31642036-31642055 | None:intergenic | 30.0% | |
| ! | GTGTAATAACTTCTCGTTTT+TGG | - | chr3_1:31642117-31642136 | Msa0355980:intron | 30.0% |
| GTAAGATCATGATACACATA+GGG | + | chr3_1:31642275-31642294 | None:intergenic | 30.0% | |
| AGTCCAAAATAGATACACAT+AGG | + | chr3_1:31642349-31642368 | None:intergenic | 30.0% | |
| AAATGAGAAGAAAAGTGGTT+GGG | + | chr3_1:31642456-31642475 | None:intergenic | 30.0% | |
| TAAGCATTTAATCTCTCTTG+AGG | - | chr3_1:31642711-31642730 | Msa0355980:intron | 30.0% | |
| CTAATGAATTATGCACTGAA+GGG | + | chr3_1:31642798-31642817 | None:intergenic | 30.0% | |
| ACTAATGAATTATGCACTGA+AGG | + | chr3_1:31642799-31642818 | None:intergenic | 30.0% | |
| ! | GTGTTTTGCAAATCTCAATT+AGG | - | chr3_1:31642817-31642836 | Msa0355980:intron | 30.0% |
| !! | TGGTGTTAAAAGTGTTTCTA+TGG | - | chr3_1:31643200-31643219 | Msa0355980:CDS | 30.0% |
| ! | GTGTTTCTATGGAAAAACAA+AGG | - | chr3_1:31643211-31643230 | Msa0355980:CDS | 30.0% |
| !! | CTTGTTGTTCATGTATAAGT+TGG | - | chr3_1:31643323-31643342 | Msa0355980:intron | 30.0% |
| TAACCATACCATGTTTGTTT+GGG | + | chr3_1:31643391-31643410 | None:intergenic | 30.0% | |
| TTAACCATACCATGTTTGTT+TGG | + | chr3_1:31643392-31643411 | None:intergenic | 30.0% | |
| GGTATGGTTAACATAATTTC+CGG | - | chr3_1:31643401-31643420 | Msa0355980:intron | 30.0% | |
| ACTCGTGAAATAAATAACAC+CGG | + | chr3_1:31643423-31643442 | None:intergenic | 30.0% | |
| ATGATTAGTGATACCTAGTT+GGG | - | chr3_1:31643488-31643507 | Msa0355980:intron | 30.0% | |
| ATCTTCTTGAAAATGCCAAA+TGG | - | chr3_1:31643553-31643572 | Msa0355980:intron | 30.0% | |
| TGCAAACAGAAAACAAATCA+AGG | + | chr3_1:31643759-31643778 | None:intergenic | 30.0% | |
| CATTTCAGCAATCTACAATT+CGG | + | chr3_1:31643808-31643827 | None:intergenic | 30.0% | |
| ACACTGTTGAAATAATTGAG+TGG | + | chr3_1:31643855-31643874 | None:intergenic | 30.0% | |
| CTAGTTGATTACAATGTAAC+AGG | - | chr3_1:31643954-31643973 | Msa0355980:intron | 30.0% | |
| !!! | TTTAGCCCATCAATTTTTTG+TGG | - | chr3_1:31644103-31644122 | Msa0355980:intron | 30.0% |
| !!! | CTTGATTTGGGTAAGATTTT+GGG | - | chr3_1:31644179-31644198 | Msa0355980:intron | 30.0% |
| !! | TGTCATTTGATTCTAAGATC+TGG | - | chr3_1:31644231-31644250 | Msa0355980:intron | 30.0% |
| AAGTAACTCTTACGAAGAAT+TGG | - | chr3_1:31644276-31644295 | Msa0355980:intron | 30.0% | |
| AGTAACTCTTACGAAGAATT+GGG | - | chr3_1:31644277-31644296 | Msa0355980:intron | 30.0% | |
| AATCCCTTAAACTTACTTGT+TGG | - | chr3_1:31644478-31644497 | Msa0355980:intron | 30.0% | |
| ATAAAACTAGATATGCAGGT+GGG | + | chr3_1:31644571-31644590 | None:intergenic | 30.0% | |
| TATAAAACTAGATATGCAGG+TGG | + | chr3_1:31644572-31644591 | None:intergenic | 30.0% | |
| CAAGTGCAAAATATTCTCAT+TGG | - | chr3_1:31645063-31645082 | Msa0355980:intron | 30.0% | |
| AGTATCTTAGTGGTCTTTAA+GGG | - | chr3_1:31645223-31645242 | Msa0355980:five_prime_UTR | 30.0% | |
| GATAAAATCCGATGTATCAT+TGG | + | chr3_1:31645352-31645371 | None:intergenic | 30.0% | |
| CTATCTTAGACCATGTACAA+TGG | + | chr3_1:31640767-31640786 | None:intergenic | 35.0% | |
| !!! | AGGGTTTTGAGGGTTTATAT+TGG | + | chr3_1:31640880-31640899 | None:intergenic | 35.0% |
| !! | TTGAAGAAACAGAAGGTGTT+GGG | + | chr3_1:31640968-31640987 | None:intergenic | 35.0% |
| !! | TGGGGTTGATGTTTAAACTT+AGG | - | chr3_1:31641246-31641265 | Msa0355980:intron | 35.0% |
| !! | GGGGTTGATGTTTAAACTTA+GGG | - | chr3_1:31641247-31641266 | Msa0355980:intron | 35.0% |
| AAACTTAGGGTAACATTGTG+TGG | - | chr3_1:31641260-31641279 | Msa0355980:intron | 35.0% | |
| TAAGGGTTCACCCAAAATTA+GGG | + | chr3_1:31641290-31641309 | None:intergenic | 35.0% | |
| TTCTGTATGTTGGATCCTAA+GGG | + | chr3_1:31641307-31641326 | None:intergenic | 35.0% | |
| ! | TACATGACTAAAAGTTCTGG+CGG | + | chr3_1:31641484-31641503 | None:intergenic | 35.0% |
| !!! | TTTTCATCTGCGTTTTTGGT+AGG | - | chr3_1:31641530-31641549 | Msa0355980:intron | 35.0% |
| ! | AGCAGAAGTACAATGAAGTA+AGG | - | chr3_1:31641747-31641766 | Msa0355980:intron | 35.0% |
| GTACAATGAAGTAAGGAAAC+CGG | - | chr3_1:31641754-31641773 | Msa0355980:intron | 35.0% | |
| CTTGAATGAAGAAGATCAGA+AGG | - | chr3_1:31641983-31642002 | Msa0355980:intron | 35.0% | |
| GAATAGCACTTGAATAGCTA+TGG | + | chr3_1:31642047-31642066 | None:intergenic | 35.0% | |
| CGTAAGATCATGATACACAT+AGG | + | chr3_1:31642276-31642295 | None:intergenic | 35.0% | |
| TACGTTCATACTGTGATCAT+TGG | + | chr3_1:31642428-31642447 | None:intergenic | 35.0% | |
| CAAATGAGAAGAAAAGTGGT+TGG | + | chr3_1:31642457-31642476 | None:intergenic | 35.0% | |
| TGAATCCTCAAAAAAGGGAT+TGG | + | chr3_1:31642922-31642941 | None:intergenic | 35.0% | |
| ! | ACTTTTACCTTCCTTGAAGA+AGG | - | chr3_1:31642954-31642973 | Msa0355980:intron | 35.0% |
| ACACCCATAAAATGGAAAGA+GGG | - | chr3_1:31642996-31643015 | Msa0355980:intron | 35.0% | |
| ! | TTGCCCTCTTTCCATTTTAT+GGG | + | chr3_1:31643002-31643021 | None:intergenic | 35.0% |
| TTCTCATGACTAACTCCATT+GGG | + | chr3_1:31643145-31643164 | None:intergenic | 35.0% | |
| GAGTTAGTCATGAGAAGAAA+GGG | - | chr3_1:31643149-31643168 | Msa0355980:intron | 35.0% | |
| ! | TGAATTTCCGAAGTTTTGCA+TGG | - | chr3_1:31643347-31643366 | Msa0355980:intron | 35.0% |
| ! | GTTTGGGACACAAATATAGT+TGG | + | chr3_1:31643375-31643394 | None:intergenic | 35.0% |
| ATTTGTGTCCCAAACAAACA+TGG | - | chr3_1:31643380-31643399 | Msa0355980:intron | 35.0% | |
| CATGATTAGTGATACCTAGT+TGG | - | chr3_1:31643487-31643506 | Msa0355980:intron | 35.0% | |
| ATGAATGCAGTTTCTTTACC+TGG | - | chr3_1:31643602-31643621 | Msa0355980:intron | 35.0% | |
| ACTGAGCAGAAAGATGAAAT+GGG | - | chr3_1:31643634-31643653 | Msa0355980:intron | 35.0% | |
| GTAGATTGCTGAAATGATCA+AGG | - | chr3_1:31643812-31643831 | Msa0355980:intron | 35.0% | |
| GTTGATTACAATGTAACAGG+AGG | - | chr3_1:31643957-31643976 | Msa0355980:intron | 35.0% | |
| GCATGCCACAAAAAATTGAT+GGG | + | chr3_1:31644111-31644130 | None:intergenic | 35.0% | |
| AGCATGCCACAAAAAATTGA+TGG | + | chr3_1:31644112-31644131 | None:intergenic | 35.0% | |
| !!! | ATCAATTTTTTGTGGCATGC+TGG | - | chr3_1:31644111-31644130 | Msa0355980:intron | 35.0% |
| !!! | GCTTGATTTGGGTAAGATTT+TGG | - | chr3_1:31644178-31644197 | Msa0355980:intron | 35.0% |
| GCATGACTATTTGAAAACAC+TGG | + | chr3_1:31644314-31644333 | None:intergenic | 35.0% | |
| ATGTTCTGCGATATGCTATT+TGG | - | chr3_1:31644373-31644392 | Msa0355980:CDS | 35.0% | |
| CTTCTCTTTACTCAACATCT+TGG | - | chr3_1:31644829-31644848 | Msa0355980:intron | 35.0% | |
| TTTACTCAACATCTTGGAGT+CGG | - | chr3_1:31644835-31644854 | Msa0355980:intron | 35.0% | |
| TGCAAAATATTCTCATTGGC+AGG | - | chr3_1:31645067-31645086 | Msa0355980:intron | 35.0% | |
| GCAAAATATTCTCATTGGCA+GGG | - | chr3_1:31645068-31645087 | Msa0355980:intron | 35.0% | |
| ! | TGAAGATGATGATGATCAAG+AGG | - | chr3_1:31645109-31645128 | Msa0355980:CDS | 35.0% |
| GAGTATCTTAGTGGTCTTTA+AGG | - | chr3_1:31645222-31645241 | Msa0355980:five_prime_UTR | 35.0% | |
| AAATAAGGTTTACGCCCAAA+GGG | + | chr3_1:31645283-31645302 | None:intergenic | 35.0% | |
| TAAATAAGGTTTACGCCCAA+AGG | + | chr3_1:31645284-31645303 | None:intergenic | 35.0% | |
| TGTGTGTGTGTGTCTAACAA+CGG | + | chr3_1:31640843-31640862 | None:intergenic | 40.0% | |
| ! | GTTGAAGAAACAGAAGGTGT+TGG | + | chr3_1:31640969-31640988 | None:intergenic | 40.0% |
| ! | ACCTTCTGTTTCTTCAACCA+TGG | - | chr3_1:31640971-31640990 | Msa0355980:three_prime_UTR | 40.0% |
| ACCATGGTTGAAGAAACAGA+AGG | + | chr3_1:31640975-31640994 | None:intergenic | 40.0% | |
| ! | TTCTGTTTCTTCAACCATGG+TGG | - | chr3_1:31640974-31640993 | Msa0355980:three_prime_UTR | 40.0% |
| TCTCTCCATTGAAAAGTTGC+AGG | - | chr3_1:31641067-31641086 | Msa0355980:CDS | 40.0% | |
| ! | TGTGTGGTTCACCCTAATTT+TGG | - | chr3_1:31641276-31641295 | Msa0355980:intron | 40.0% |
| ! | GTGTGGTTCACCCTAATTTT+GGG | - | chr3_1:31641277-31641296 | Msa0355980:intron | 40.0% |
| CTAAGGGTTCACCCAAAATT+AGG | + | chr3_1:31641291-31641310 | None:intergenic | 40.0% | |
| !! | CTAATTTTGGGTGAACCCTT+AGG | - | chr3_1:31641289-31641308 | Msa0355980:intron | 40.0% |
| CTTCTGTATGTTGGATCCTA+AGG | + | chr3_1:31641308-31641327 | None:intergenic | 40.0% | |
| !! | ATTCTGGTTCCAGATCAATG+AGG | - | chr3_1:31641697-31641716 | Msa0355980:intron | 40.0% |
| !! | TTTTTGAGCCATCCTGTTCT+TGG | - | chr3_1:31641954-31641973 | Msa0355980:intron | 40.0% |
| TTCAAGAGATCACCAAGAAC+AGG | + | chr3_1:31641969-31641988 | None:intergenic | 40.0% | |
| GCATTTAATCTCTCTTGAGG+TGG | - | chr3_1:31642714-31642733 | Msa0355980:intron | 40.0% | |
| !!! | TGACTCCAATCCCTTTTTTG+AGG | - | chr3_1:31642914-31642933 | Msa0355980:intron | 40.0% |
| ! | TTTCCATTTTATGGGTGTGG+CGG | + | chr3_1:31642994-31643013 | None:intergenic | 40.0% |
| ! | CTCTTTCCATTTTATGGGTG+TGG | + | chr3_1:31642997-31643016 | None:intergenic | 40.0% |
| CACACCCATAAAATGGAAAG+AGG | - | chr3_1:31642995-31643014 | Msa0355980:intron | 40.0% | |
| ! | CTTGCCCTCTTTCCATTTTA+TGG | + | chr3_1:31643003-31643022 | None:intergenic | 40.0% |
| CATAAAATGGAAAGAGGGCA+AGG | - | chr3_1:31643001-31643020 | Msa0355980:CDS | 40.0% | |
| CTTCTCATGACTAACTCCAT+TGG | + | chr3_1:31643146-31643165 | None:intergenic | 40.0% | |
| GGAGTTAGTCATGAGAAGAA+AGG | - | chr3_1:31643148-31643167 | Msa0355980:intron | 40.0% | |
| GTTGGAACCATGCAAAACTT+CGG | + | chr3_1:31643357-31643376 | None:intergenic | 40.0% | |
| TGTCCCAAACAAACATGGTA+TGG | - | chr3_1:31643385-31643404 | Msa0355980:intron | 40.0% | |
| CACTGAGCAGAAAGATGAAA+TGG | - | chr3_1:31643633-31643652 | Msa0355980:intron | 40.0% | |
| AATGGGTGACATTCATGATG+AGG | - | chr3_1:31643651-31643670 | Msa0355980:intron | 40.0% | |
| GTATAGAGAGTGGTAGGTAT+TGG | + | chr3_1:31643920-31643939 | None:intergenic | 40.0% | |
| ACACAAGTATAGAGAGTGGT+AGG | + | chr3_1:31643926-31643945 | None:intergenic | 40.0% | |
| AGAGACACAAGTATAGAGAG+TGG | + | chr3_1:31643930-31643949 | None:intergenic | 40.0% | |
| AGTTGTGTTTGCGCTTGATT+TGG | - | chr3_1:31644166-31644185 | Msa0355980:intron | 40.0% | |
| GTTGTGTTTGCGCTTGATTT+GGG | - | chr3_1:31644167-31644186 | Msa0355980:intron | 40.0% | |
| ! | TTTGGGTAAGATTTTGGGCA+AGG | - | chr3_1:31644184-31644203 | Msa0355980:intron | 40.0% |
| ! | TCTAAGATCTGGCATCAACT+AGG | - | chr3_1:31644242-31644261 | Msa0355980:intron | 40.0% |
| !! | TAGATGTAGGTGGGCTATAA+TGG | + | chr3_1:31644608-31644627 | None:intergenic | 40.0% |
| ATATTCTCATTGGCAGGGAA+AGG | - | chr3_1:31645073-31645092 | Msa0355980:intron | 40.0% | |
| TAAGGGATGATGAAAGACCA+AGG | - | chr3_1:31645240-31645259 | Msa0355980:five_prime_UTR | 40.0% | |
| AATAAGGTTTACGCCCAAAG+GGG | + | chr3_1:31645282-31645301 | None:intergenic | 40.0% | |
| !!! | GGGAAGTGTTAGGGTTTTGA+GGG | + | chr3_1:31640890-31640909 | None:intergenic | 45.0% |
| !!! | AGGGAAGTGTTAGGGTTTTG+AGG | + | chr3_1:31640891-31640910 | None:intergenic | 45.0% |
| !! | CGTGAATGAGGGAAGTGTTA+GGG | + | chr3_1:31640899-31640918 | None:intergenic | 45.0% |
| TGTTCTTCGAGCGTGAATGA+GGG | + | chr3_1:31640910-31640929 | None:intergenic | 45.0% | |
| TCATTGCGCTTGTCATACAC+CGG | + | chr3_1:31641776-31641795 | None:intergenic | 45.0% | |
| TCAAGTCCATTCCCGATTTC+TGG | - | chr3_1:31641801-31641820 | Msa0355980:intron | 45.0% | |
| AGTTAGCCAGAAATCGGGAA+TGG | + | chr3_1:31641810-31641829 | None:intergenic | 45.0% | |
| TACCGCAGTTAGCCAGAAAT+CGG | + | chr3_1:31641816-31641835 | None:intergenic | 45.0% | |
| AGAGATCACCAAGAACAGGA+TGG | + | chr3_1:31641965-31641984 | None:intergenic | 45.0% | |
| TGTGGTTCCTTCTTCAAGGA+AGG | + | chr3_1:31642964-31642983 | None:intergenic | 45.0% | |
| GCTTTGTGGTTCCTTCTTCA+AGG | + | chr3_1:31642968-31642987 | None:intergenic | 45.0% | |
| TTACCGCCACACCCATAAAA+TGG | - | chr3_1:31642988-31643007 | Msa0355980:intron | 45.0% | |
| !! | AACATGAAGGGCATTCCCAA+TGG | - | chr3_1:31643127-31643146 | Msa0355980:intron | 45.0% |
| AGCTGCTTCTGATATCAGGT+TGG | - | chr3_1:31643180-31643199 | Msa0355980:CDS | 45.0% | |
| ! | TGATGATGAAGCTGGTGATG+CGG | - | chr3_1:31644002-31644021 | Msa0355980:intron | 45.0% |
| ! | GGTAAGATTTTGGGCAAGGT+GGG | - | chr3_1:31644188-31644207 | Msa0355980:intron | 45.0% |
| ATTGTTGTGCTACAGCAGAG+CGG | - | chr3_1:31644412-31644431 | Msa0355980:CDS | 45.0% | |
| GTGAAGCAACTACATAGCTC+TGG | + | chr3_1:31644955-31644974 | None:intergenic | 45.0% | |
| GGATGATGAAAGACCAAGGT+TGG | - | chr3_1:31645244-31645263 | Msa0355980:five_prime_UTR | 45.0% | |
| ! | GAAAGACCAAGGTTGGCTAT+TGG | - | chr3_1:31645251-31645270 | Msa0355980:five_prime_UTR | 45.0% |
| GGAAAACCAATAGCCAACCT+TGG | + | chr3_1:31645260-31645279 | None:intergenic | 45.0% | |
| !!! | GCTATTGGTTTTCCCCCTTT+GGG | - | chr3_1:31645266-31645285 | Msa0355980:five_prime_UTR | 45.0% |
| ATAAGGTTTACGCCCAAAGG+GGG | + | chr3_1:31645281-31645300 | None:intergenic | 45.0% | |
| !!! | GTTTTAATTTATTTATTTTA+AGG | - | chr3_1:31645190-31645209 | Msa0355980:exon | 5.0% |
| !! | GCGTGAATGAGGGAAGTGTT+AGG | + | chr3_1:31640900-31640919 | None:intergenic | 50.0% |
| GTGTTCTTCGAGCGTGAATG+AGG | + | chr3_1:31640911-31640930 | None:intergenic | 50.0% | |
| TGAAAAGGGTGAGAACGCTG+AGG | - | chr3_1:31641025-31641044 | Msa0355980:exon | 50.0% | |
| CTGGTTCCAGATCAATGAGG+AGG | - | chr3_1:31641700-31641719 | Msa0355980:intron | 50.0% | |
| !! | TCCCGATTTCTGGCTAACTG+CGG | - | chr3_1:31641811-31641830 | Msa0355980:intron | 50.0% |
| ACCGCAGTTAGCCAGAAATC+GGG | + | chr3_1:31641815-31641834 | None:intergenic | 50.0% | |
| AGCGAGCTGCTTCTGATATC+AGG | - | chr3_1:31643176-31643195 | Msa0355980:CDS | 50.0% | |
| CTGCTCAGTGTCACAAAACC+AGG | + | chr3_1:31643623-31643642 | None:intergenic | 50.0% | |
| CATCCTCCTCTGCTTCATCA+GGG | + | chr3_1:31643984-31644003 | None:intergenic | 50.0% | |
| TCATCCTCCTCTGCTTCATC+AGG | + | chr3_1:31643985-31644004 | None:intergenic | 50.0% | |
| ! | GAGGAGGATGATGATGAAGC+TGG | - | chr3_1:31643994-31644013 | Msa0355980:intron | 50.0% |
| ! | GGGTAAGATTTTGGGCAAGG+TGG | - | chr3_1:31644187-31644206 | Msa0355980:intron | 50.0% |
| GGCAAGGTGGGTATTCAAAG+AGG | - | chr3_1:31644200-31644219 | Msa0355980:CDS | 50.0% | |
| CAACATCTTGGAGTCGGACT+AGG | - | chr3_1:31644841-31644860 | Msa0355980:intron | 50.0% | |
| !!! | GGCTATTGGTTTTCCCCCTT+TGG | - | chr3_1:31645265-31645284 | Msa0355980:five_prime_UTR | 50.0% |
| GGTTTCAAACCCTAGCGCAG+GGG | + | chr3_1:31640947-31640966 | None:intergenic | 55.0% | |
| GGGTTTCAAACCCTAGCGCA+GGG | + | chr3_1:31640948-31640967 | None:intergenic | 55.0% | |
| TGGGTTTCAAACCCTAGCGC+AGG | + | chr3_1:31640949-31640968 | None:intergenic | 55.0% | |
| CTTAGACTTGTCGGCCACCA+TGG | + | chr3_1:31640991-31641010 | None:intergenic | 55.0% | |
| GAGAACGCTGAGGAGATCGA+CGG | - | chr3_1:31641035-31641054 | Msa0355980:exon | 55.0% | |
| ! | CGCTAGCCTCCTCATTGATC+TGG | + | chr3_1:31641709-31641728 | None:intergenic | 55.0% |
| AGAGGATGACGACGATGACG+AGG | - | chr3_1:31645127-31645146 | Msa0355980:CDS | 55.0% | |
| ACCAATCTCTCCCCTGCGCT+AGG | - | chr3_1:31640934-31640953 | Msa0355980:three_prime_UTR | 60.0% | |
| CCAATCTCTCCCCTGCGCTA+GGG | - | chr3_1:31640935-31640954 | Msa0355980:three_prime_UTR | 60.0% | |
| GGGTGTGGCGGTAAGCTTTG+TGG | + | chr3_1:31642982-31643001 | None:intergenic | 60.0% | |
| GGAGGACCCTGATGAAGCAG+AGG | - | chr3_1:31643975-31643994 | Msa0355980:intron | 60.0% | |
| GGACCCTGATGAAGCAGAGG+AGG | - | chr3_1:31643978-31643997 | Msa0355980:intron | 60.0% | |
| TAACAACGGTGCGCGCGTGC+GGG | + | chr3_1:31640829-31640848 | None:intergenic | 65.0% | |
| CTAACAACGGTGCGCGCGTG+CGG | + | chr3_1:31640830-31640849 | None:intergenic | 65.0% | |
| CCCTAGCGCAGGGGAGAGAT+TGG | + | chr3_1:31640938-31640957 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 31640727 | 31645469 | 31640727 | ID=Msa0355980;Name=Msa0355980 |
| chr3_1 | mRNA | 31640727 | 31645469 | 31640727 | ID=Msa0355980-mRNA-1;Parent=Msa0355980;Name=Msa0355980-mRNA-1;_AED=0.04;_eAED=0.04;_QI=263|1|1|1|1|1|10|309|260 |
| chr3_1 | exon | 31640727 | 31641107 | 31640727 | ID=Msa0355980-mRNA-1:exon:6389;Parent=Msa0355980-mRNA-1 |
| chr3_1 | exon | 31642173 | 31642220 | 31642173 | ID=Msa0355980-mRNA-1:exon:6388;Parent=Msa0355980-mRNA-1 |
| chr3_1 | exon | 31642324 | 31642380 | 31642324 | ID=Msa0355980-mRNA-1:exon:6387;Parent=Msa0355980-mRNA-1 |
| chr3_1 | exon | 31642524 | 31642584 | 31642524 | ID=Msa0355980-mRNA-1:exon:6386;Parent=Msa0355980-mRNA-1 |
| chr3_1 | exon | 31642999 | 31643060 | 31642999 | ID=Msa0355980-mRNA-1:exon:6385;Parent=Msa0355980-mRNA-1 |
| chr3_1 | exon | 31643174 | 31643287 | 31643174 | ID=Msa0355980-mRNA-1:exon:6384;Parent=Msa0355980-mRNA-1 |
| chr3_1 | exon | 31643419 | 31643490 | 31643419 | ID=Msa0355980-mRNA-1:exon:6383;Parent=Msa0355980-mRNA-1 |
| chr3_1 | exon | 31644192 | 31644242 | 31644192 | ID=Msa0355980-mRNA-1:exon:6382;Parent=Msa0355980-mRNA-1 |
| chr3_1 | exon | 31644364 | 31644486 | 31644364 | ID=Msa0355980-mRNA-1:exon:6381;Parent=Msa0355980-mRNA-1 |
| chr3_1 | exon | 31645084 | 31645469 | 31645084 | ID=Msa0355980-mRNA-1:exon:6380;Parent=Msa0355980-mRNA-1 |
| chr3_1 | five_prime_UTR | 31645207 | 31645469 | 31645207 | ID=Msa0355980-mRNA-1:five_prime_utr;Parent=Msa0355980-mRNA-1 |
| chr3_1 | CDS | 31645084 | 31645206 | 31645084 | ID=Msa0355980-mRNA-1:cds;Parent=Msa0355980-mRNA-1 |
| chr3_1 | CDS | 31644364 | 31644486 | 31644364 | ID=Msa0355980-mRNA-1:cds;Parent=Msa0355980-mRNA-1 |
| chr3_1 | CDS | 31644192 | 31644242 | 31644192 | ID=Msa0355980-mRNA-1:cds;Parent=Msa0355980-mRNA-1 |
| chr3_1 | CDS | 31643419 | 31643490 | 31643419 | ID=Msa0355980-mRNA-1:cds;Parent=Msa0355980-mRNA-1 |
| chr3_1 | CDS | 31643174 | 31643287 | 31643174 | ID=Msa0355980-mRNA-1:cds;Parent=Msa0355980-mRNA-1 |
| chr3_1 | CDS | 31642999 | 31643060 | 31642999 | ID=Msa0355980-mRNA-1:cds;Parent=Msa0355980-mRNA-1 |
| chr3_1 | CDS | 31642524 | 31642584 | 31642524 | ID=Msa0355980-mRNA-1:cds;Parent=Msa0355980-mRNA-1 |
| chr3_1 | CDS | 31642324 | 31642380 | 31642324 | ID=Msa0355980-mRNA-1:cds;Parent=Msa0355980-mRNA-1 |
| chr3_1 | CDS | 31642173 | 31642220 | 31642173 | ID=Msa0355980-mRNA-1:cds;Parent=Msa0355980-mRNA-1 |
| chr3_1 | CDS | 31641036 | 31641107 | 31641036 | ID=Msa0355980-mRNA-1:cds;Parent=Msa0355980-mRNA-1 |
| chr3_1 | three_prime_UTR | 31640727 | 31641035 | 31640727 | ID=Msa0355980-mRNA-1:three_prime_utr;Parent=Msa0355980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
