Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0571630 | KEH21075.1 | 93.805 | 113 | 7 | 0 | 1 | 113 | 1 | 113 | 9.24e-70 | 218 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0571630 | sp|A2RVM0|TIC32_ARATH | 66.372 | 113 | 38 | 0 | 1 | 113 | 1 | 113 | 1.61e-51 | 167 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0571630 | A0A072U5E0 | 93.805 | 113 | 7 | 0 | 1 | 113 | 1 | 113 | 4.41e-70 | 218 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0018650 | Msa0571630 | 0.801889 | 7.277147e-49 | -8.615850e-47 |
| Msa0021510 | Msa0571630 | 0.831856 | 1.316538e-55 | -8.615850e-47 |
| Msa0034110 | Msa0571630 | 0.828080 | 1.096456e-54 | -8.615850e-47 |
| Msa0036140 | Msa0571630 | 0.806400 | 8.378770e-50 | -8.615850e-47 |
| Msa0037570 | Msa0571630 | -0.815617 | 8.435143e-52 | -8.615850e-47 |
| Msa0044260 | Msa0571630 | 0.807049 | 6.111856e-50 | -8.615850e-47 |
| Msa0079070 | Msa0571630 | 0.819383 | 1.195705e-52 | -8.615850e-47 |
| Msa0114060 | Msa0571630 | 0.836798 | 7.574658e-57 | -8.615850e-47 |
| Msa0117710 | Msa0571630 | 0.818695 | 1.714080e-52 | -8.615850e-47 |
| Msa0127650 | Msa0571630 | 0.833971 | 3.924974e-56 | -8.615850e-47 |
| Msa0142220 | Msa0571630 | 0.819612 | 1.059712e-52 | -8.615850e-47 |
| Msa0159930 | Msa0571630 | 0.801733 | 7.834162e-49 | -8.615850e-47 |
| Msa0174110 | Msa0571630 | 0.818395 | 2.004477e-52 | -8.615850e-47 |
| Msa0212990 | Msa0571630 | 0.802074 | 6.667013e-49 | -8.615850e-47 |
| Msa0229990 | Msa0571630 | 0.803107 | 4.082663e-49 | -8.615850e-47 |
| Msa0383800 | Msa0571630 | 0.810769 | 9.778440e-51 | -8.615850e-47 |
| Msa0386090 | Msa0571630 | 0.837731 | 4.371486e-57 | -8.615850e-47 |
| Msa0397750 | Msa0571630 | 0.820667 | 6.076097e-53 | -8.615850e-47 |
| Msa0402290 | Msa0571630 | 0.801441 | 8.991452e-49 | -8.615850e-47 |
| Msa0430420 | Msa0571630 | 0.823579 | 1.283616e-53 | -8.615850e-47 |
| Msa0432300 | Msa0571630 | 0.800144 | 1.654401e-48 | -8.615850e-47 |
| Msa0440400 | Msa0571630 | 0.841813 | 3.783121e-58 | -8.615850e-47 |
| Msa0466120 | Msa0571630 | 0.805028 | 1.626695e-49 | -8.615850e-47 |
| Msa0267370 | Msa0571630 | 0.834651 | 2.649817e-56 | -8.615850e-47 |
| Msa0280090 | Msa0571630 | 0.806291 | 8.833648e-50 | -8.615850e-47 |
| Msa0283910 | Msa0571630 | 0.806069 | 9.839372e-50 | -8.615850e-47 |
| Msa0309770 | Msa0571630 | 0.838528 | 2.726701e-57 | -8.615850e-47 |
| Msa0326940 | Msa0571630 | 0.805539 | 1.271088e-49 | -8.615850e-47 |
| Msa0330340 | Msa0571630 | 0.800060 | 1.720509e-48 | -8.615850e-47 |
| Msa0355220 | Msa0571630 | 0.800953 | 1.131585e-48 | -8.615850e-47 |
| Msa0355980 | Msa0571630 | 0.811621 | 6.388455e-51 | -8.615850e-47 |
| Msa0357340 | Msa0571630 | 0.806779 | 6.970241e-50 | -8.615850e-47 |
| Msa0535630 | Msa0571630 | 0.807409 | 5.126130e-50 | -8.615850e-47 |
| Msa0545210 | Msa0571630 | 0.821312 | 4.317065e-53 | -8.615850e-47 |
| Msa0560870 | Msa0571630 | 0.804308 | 2.299219e-49 | -8.615850e-47 |
| Msa0568310 | Msa0571630 | 0.814787 | 1.289689e-51 | -8.615850e-47 |
| Msa0570760 | Msa0571630 | 0.823725 | 1.186559e-53 | -8.615850e-47 |
| Msa0571440 | Msa0571630 | 0.820772 | 5.748943e-53 | -8.615850e-47 |
| Msa0571630 | Msa0616160 | 0.817447 | 3.282650e-52 | -8.615850e-47 |
| Msa0571630 | Msa0625910 | 0.800490 | 1.406453e-48 | -8.615850e-47 |
| Msa0571630 | Msa0641670 | 0.812022 | 5.226151e-51 | -8.615850e-47 |
| Msa0571630 | Msa0661650 | 0.866156 | 3.502955e-65 | -8.615850e-47 |
| Msa0571630 | Msa0663240 | 0.818131 | 2.300755e-52 | -8.615850e-47 |
| Msa0571630 | Msa0663390 | 0.804403 | 2.197218e-49 | -8.615850e-47 |
| Msa0571630 | Msa0663700 | 0.805484 | 1.305758e-49 | -8.615850e-47 |
| Msa0571630 | Msa0673460 | 0.820621 | 6.227603e-53 | -8.615850e-47 |
| Msa0571630 | Msa0681250 | 0.818500 | 1.898067e-52 | -8.615850e-47 |
| Msa0571630 | Msa0681270 | 0.820939 | 5.261225e-53 | -8.615850e-47 |
| Msa0571630 | Msa0688270 | 0.816416 | 5.594407e-52 | -8.615850e-47 |
| Msa0571630 | Msa0688480 | 0.812940 | 3.291369e-51 | -8.615850e-47 |
| Msa0571630 | Msa0697390 | 0.800239 | 1.581764e-48 | -8.615850e-47 |
| Msa0571630 | Msa0701830 | 0.806116 | 9.615999e-50 | -8.615850e-47 |
| Msa0571630 | Msa0707250 | 0.800509 | 1.393860e-48 | -8.615850e-47 |
| Msa0571630 | Msa0711450 | 0.807856 | 4.120195e-50 | -8.615850e-47 |
| Msa0571630 | Msa0766630 | 0.815953 | 7.098054e-52 | -8.615850e-47 |
| Msa0571630 | Msa0802830 | 0.802451 | 5.575533e-49 | -8.615850e-47 |
| Msa0571630 | Msa0832340 | 0.805491 | 1.300996e-49 | -8.615850e-47 |
| Msa0571630 | Msa0843260 | 0.819688 | 1.018585e-52 | -8.615850e-47 |
| Msa0571630 | Msa0848060 | 0.803044 | 4.205650e-49 | -8.615850e-47 |
| Msa0571630 | Msa0880950 | 0.813638 | 2.312837e-51 | -8.615850e-47 |
| Msa0571630 | Msa0905040 | 0.808713 | 2.705021e-50 | -8.615850e-47 |
| Msa0571630 | Msa0907260 | 0.814694 | 1.352237e-51 | -8.615850e-47 |
| Msa0571630 | Msa0935910 | 0.803902 | 2.792684e-49 | -8.615850e-47 |
| Msa0571630 | Msa0938220 | 0.801567 | 8.473732e-49 | -8.615850e-47 |
| Msa0571630 | Msa0945970 | 0.822719 | 2.037836e-53 | -8.615850e-47 |
| Msa0571630 | Msa0954910 | 0.803660 | 3.135444e-49 | -8.615850e-47 |
| Msa0571630 | Msa0956270 | 0.801878 | 7.313277e-49 | -8.615850e-47 |
| Msa0571630 | Msa0966400 | 0.806451 | 8.175305e-50 | -8.615850e-47 |
| Msa0571630 | Msa0989360 | 0.807502 | 4.898826e-50 | -8.615850e-47 |
| Msa0571630 | Msa1014540 | 0.829840 | 4.109129e-55 | -8.615850e-47 |
| Msa0571630 | Msa1035480 | 0.810527 | 1.102590e-50 | -8.615850e-47 |
| Msa0571630 | Msa1037780 | 0.806469 | 8.102603e-50 | -8.615850e-47 |
| Msa0571630 | Msa1075650 | 0.824723 | 6.917197e-54 | -8.615850e-47 |
| Msa0571630 | Msa1081980 | 0.823206 | 1.568990e-53 | -8.615850e-47 |
| Msa0571630 | Msa1082500 | 0.806015 | 1.009707e-49 | -8.615850e-47 |
| Msa0571630 | Msa1083840 | 0.806618 | 7.537275e-50 | -8.615850e-47 |
| Msa0571630 | Msa1104090 | 0.830368 | 3.054219e-55 | -8.615850e-47 |
| Msa0571630 | Msa1162780 | 0.835056 | 2.094622e-56 | -8.615850e-47 |
| Msa0571630 | Msa1163090 | 0.822922 | 1.828129e-53 | -8.615850e-47 |
| Msa0571630 | Msa1181910 | 0.800913 | 1.153223e-48 | -8.615850e-47 |
| Msa0571630 | Msa1225130 | 0.825119 | 5.575783e-54 | -8.615850e-47 |
| Msa0571630 | Msa1228590 | 0.864905 | 8.683895e-65 | -8.615850e-47 |
| Msa0571630 | Msa1246510 | 0.839116 | 1.920348e-57 | -8.615850e-47 |
| Msa0571630 | Msa1249490 | 0.807292 | 5.428503e-50 | -8.615850e-47 |
| Msa0571630 | Msa1284680 | 0.818351 | 2.050741e-52 | -8.615850e-47 |
| Msa0571630 | Msa1296760 | 0.800457 | 1.428634e-48 | -8.615850e-47 |
| Msa0571630 | Msa1305810 | 0.801217 | 9.990843e-49 | -8.615850e-47 |
| Msa0571630 | Msa1309030 | 0.805377 | 1.374532e-49 | -8.615850e-47 |
| Msa0571630 | Msa1373030 | 0.821883 | 3.186188e-53 | -8.615850e-47 |
| Msa0571630 | Msa1374470 | 0.816152 | 6.407375e-52 | -8.615850e-47 |
| Msa0571630 | Msa1392240 | 0.848976 | 4.348059e-60 | -8.615850e-47 |
| Msa0571630 | Msa1397860 | 0.801696 | 7.972016e-49 | -8.615850e-47 |
| Msa0571630 | Msa1409700 | 0.808143 | 3.579376e-50 | -8.615850e-47 |
| Msa0571630 | Msa1411020 | 0.806654 | 7.404631e-50 | -8.615850e-47 |
| Msa0571630 | Msa1415910 | 0.800984 | 1.114927e-48 | -8.615850e-47 |
| Msa0571630 | Msa1419960 | 0.811864 | 5.654977e-51 | -8.615850e-47 |
| Msa0571630 | Msa1423390 | 0.802787 | 4.753931e-49 | -8.615850e-47 |
| Msa0571630 | Msa1424290 | 0.800882 | 1.169734e-48 | -8.615850e-47 |
| Msa0571630 | Msa1434350 | 0.800782 | 1.226474e-48 | -8.615850e-47 |
| Msa0571630 | Msa1436650 | 0.805923 | 1.056030e-49 | -8.615850e-47 |
| Msa0571630 | Msa1440370 | 0.801551 | 8.535803e-49 | -8.615850e-47 |
| Msa0571630 | Msa1440560 | 0.860781 | 1.626253e-63 | -8.615850e-47 |
| Msa0571630 | Msa1453320 | 0.801435 | 9.015523e-49 | -8.615850e-47 |
| Msa0571630 | Msa1460050 | 0.817997 | 2.466341e-52 | -8.615850e-47 |
| Msa0571630 | Msa1463900 | 0.800157 | 1.644138e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0571630 | MtrunA17_Chr8g0386971 | 93.805 | 113 | 7 | 0 | 1 | 113 | 1 | 113 | 1.33e-72 | 218 |
| Msa0571630 | MtrunA17_Chr1g0202891 | 71.681 | 113 | 32 | 0 | 1 | 113 | 1 | 113 | 3.56e-51 | 164 |
| Msa0571630 | MtrunA17_Chr1g0202931 | 69.027 | 113 | 35 | 0 | 1 | 113 | 1 | 113 | 5.31e-51 | 163 |
| Msa0571630 | MtrunA17_Chr1g0202871 | 69.912 | 113 | 34 | 0 | 1 | 113 | 1 | 113 | 2.71e-50 | 161 |
| Msa0571630 | MtrunA17_Chr1g0202861 | 66.372 | 113 | 38 | 0 | 1 | 113 | 42 | 154 | 4.68e-48 | 157 |
| Msa0571630 | MtrunA17_Chr6g0470321 | 66.667 | 105 | 35 | 0 | 9 | 113 | 17 | 121 | 6.37e-46 | 150 |
| Msa0571630 | MtrunA17_Chr6g0470501 | 67.308 | 104 | 34 | 0 | 10 | 113 | 37 | 140 | 6.25e-45 | 148 |
| Msa0571630 | MtrunA17_Chr7g0262941 | 54.128 | 109 | 50 | 0 | 5 | 113 | 10 | 118 | 1.82e-36 | 126 |
| Msa0571630 | MtrunA17_Chr1g0182541 | 53.211 | 109 | 51 | 0 | 5 | 113 | 10 | 118 | 6.55e-36 | 124 |
| Msa0571630 | MtrunA17_Chr3g0117241 | 46.957 | 115 | 58 | 1 | 2 | 113 | 7 | 121 | 1.69e-33 | 114 |
| Msa0571630 | MtrunA17_Chr4g0058731 | 48.696 | 115 | 56 | 1 | 2 | 113 | 18 | 132 | 3.32e-31 | 112 |
| Msa0571630 | MtrunA17_Chr8g0388831 | 49.558 | 113 | 56 | 1 | 2 | 113 | 7 | 119 | 6.23e-29 | 106 |
| Msa0571630 | MtrunA17_Chr1g0202911 | 47.297 | 74 | 39 | 0 | 33 | 106 | 4 | 77 | 1.43e-22 | 84.3 |
| Msa0571630 | MtrunA17_Chr6g0481311 | 43.333 | 90 | 45 | 1 | 30 | 113 | 62 | 151 | 1.64e-14 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0571630 | AT4G23430.4 | 66.372 | 113 | 38 | 0 | 1 | 113 | 1 | 113 | 1.04e-52 | 167 |
| Msa0571630 | AT4G23430.3 | 66.372 | 113 | 38 | 0 | 1 | 113 | 1 | 113 | 1.14e-52 | 167 |
| Msa0571630 | AT4G23430.2 | 66.372 | 113 | 38 | 0 | 1 | 113 | 1 | 113 | 1.64e-52 | 167 |
| Msa0571630 | AT4G23430.1 | 66.372 | 113 | 38 | 0 | 1 | 113 | 1 | 113 | 1.77e-52 | 167 |
| Msa0571630 | AT4G23420.5 | 66.372 | 113 | 38 | 0 | 1 | 113 | 1 | 113 | 1.82e-52 | 166 |
| Msa0571630 | AT4G23420.4 | 66.372 | 113 | 38 | 0 | 1 | 113 | 1 | 113 | 3.02e-52 | 165 |
| Msa0571630 | AT4G23420.1 | 66.372 | 113 | 38 | 0 | 1 | 113 | 1 | 113 | 1.04e-51 | 165 |
| Msa0571630 | AT4G23420.2 | 66.372 | 113 | 38 | 0 | 1 | 113 | 1 | 113 | 1.04e-51 | 165 |
| Msa0571630 | AT4G11410.2 | 69.027 | 113 | 35 | 0 | 1 | 113 | 1 | 113 | 2.79e-51 | 162 |
| Msa0571630 | AT4G11410.1 | 69.027 | 113 | 35 | 0 | 1 | 113 | 1 | 113 | 8.68e-51 | 163 |
| Msa0571630 | AT4G23420.3 | 66.346 | 104 | 35 | 0 | 10 | 113 | 27 | 130 | 2.89e-46 | 152 |
| Msa0571630 | AT4G24050.2 | 51.786 | 112 | 54 | 0 | 2 | 113 | 7 | 118 | 2.17e-33 | 117 |
| Msa0571630 | AT2G37540.2 | 52.294 | 109 | 52 | 0 | 5 | 113 | 9 | 117 | 2.97e-33 | 116 |
| Msa0571630 | AT4G24050.1 | 51.786 | 112 | 54 | 0 | 2 | 113 | 7 | 118 | 7.22e-33 | 117 |
| Msa0571630 | AT5G50130.3 | 52.632 | 114 | 52 | 1 | 2 | 113 | 7 | 120 | 9.75e-33 | 115 |
| Msa0571630 | AT5G50130.9 | 52.632 | 114 | 52 | 1 | 2 | 113 | 7 | 120 | 1.04e-32 | 115 |
| Msa0571630 | AT2G37540.1 | 52.294 | 109 | 52 | 0 | 5 | 113 | 9 | 117 | 1.88e-32 | 115 |
| Msa0571630 | AT5G50130.1 | 52.632 | 114 | 52 | 1 | 2 | 113 | 7 | 120 | 2.48e-32 | 115 |
| Msa0571630 | AT5G50130.4 | 52.632 | 114 | 52 | 1 | 2 | 113 | 7 | 120 | 3.47e-32 | 115 |
| Msa0571630 | AT5G50130.2 | 52.632 | 114 | 52 | 1 | 2 | 113 | 7 | 120 | 3.48e-32 | 115 |
| Msa0571630 | AT1G64590.1 | 54.639 | 97 | 44 | 0 | 17 | 113 | 22 | 118 | 1.83e-26 | 100 |
| Msa0571630 | AT5G02540.1 | 47.706 | 109 | 57 | 0 | 5 | 113 | 9 | 117 | 7.15e-24 | 93.6 |
| Msa0571630 | AT5G50130.8 | 53.750 | 80 | 37 | 0 | 34 | 113 | 8 | 87 | 3.05e-22 | 89.0 |
| Msa0571630 | AT5G50130.7 | 53.750 | 80 | 37 | 0 | 34 | 113 | 8 | 87 | 3.29e-22 | 88.6 |
| Msa0571630 | AT5G50130.5 | 53.750 | 80 | 37 | 0 | 34 | 113 | 8 | 87 | 4.58e-22 | 88.2 |
| Msa0571630 | AT5G50130.6 | 53.750 | 80 | 37 | 0 | 34 | 113 | 8 | 87 | 4.81e-22 | 88.2 |
| Msa0571630 | AT4G27760.1 | 43.820 | 89 | 44 | 2 | 30 | 113 | 58 | 145 | 3.36e-13 | 64.7 |
| Msa0571630 | AT5G53100.1 | 41.111 | 90 | 47 | 1 | 30 | 113 | 45 | 134 | 4.36e-13 | 64.3 |
| Msa0571630 | AT5G53090.1 | 42.697 | 89 | 45 | 2 | 30 | 113 | 57 | 144 | 1.96e-11 | 59.7 |
| Msa0571630 | AT1G03630.2 | 43.023 | 86 | 42 | 3 | 31 | 113 | 89 | 170 | 2.79e-11 | 59.3 |
| Msa0571630 | AT1G03630.1 | 43.023 | 86 | 42 | 3 | 31 | 113 | 91 | 172 | 2.82e-11 | 59.3 |
Find 93 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAATAAAAGTTGTTTCTTAA+TGG | 0.163005 | 4_1:-74330279 | None:intergenic |
| TTTCAATTATGTAATGTTTC+TGG | 0.164589 | 4_1:+74330216 | Msa0571630:five_prime_UTR |
| TTGGGCCAGCTTTGTATCTT+TGG | 0.197146 | 4_1:-74333064 | None:intergenic |
| TTTCGACTAAATACCTAAAT+TGG | 0.197991 | 4_1:+74330901 | Msa0571630:three_prime_UTR |
| ACAATTTCAAGTACCAATTT+AGG | 0.211511 | 4_1:-74330914 | None:intergenic |
| TCAGAGTATCCATTCATTAC+AGG | 0.268729 | 4_1:+74333259 | Msa0571630:three_prime_UTR |
| TTATGTATAGATTGCAGATT+TGG | 0.274351 | 4_1:+74331265 | Msa0571630:three_prime_UTR |
| AAAGGTTTGTCAACAGAAAA+TGG | 0.291840 | 4_1:-74331537 | None:intergenic |
| TGATCTCTAGAATTGCTAAA+TGG | 0.342459 | 4_1:-74331131 | None:intergenic |
| CCACAGGTCAAGGGTATATC+TGG | 0.344276 | 4_1:+74332997 | Msa0571630:three_prime_UTR |
| ACAATTTCTAACCATACATA+TGG | 0.364521 | 4_1:+74330859 | Msa0571630:exon |
| CTCCGCTGGAACATTATTAC+TGG | 0.366519 | 4_1:-74330253 | None:intergenic |
| TATCAAAGAAACTTTACTTA+AGG | 0.377813 | 4_1:+74330721 | Msa0571630:CDS |
| AATTGGTACTTGAAATTGTC+GGG | 0.385431 | 4_1:+74330918 | Msa0571630:three_prime_UTR |
| TATATCTGGTGAATACTTTA+CGG | 0.390465 | 4_1:+74333011 | Msa0571630:three_prime_UTR |
| TTAGCTCTTTCGCATCTGTT+AGG | 0.393282 | 4_1:+74330783 | Msa0571630:CDS |
| ATGCAAAATATTTGCAAGCT+TGG | 0.394712 | 4_1:-74331885 | None:intergenic |
| ATATTAATTACCCAAGTGAT+TGG | 0.395118 | 4_1:-74331393 | None:intergenic |
| TGCATGCCAATGAGCTTTCA+AGG | 0.395425 | 4_1:+74331903 | Msa0571630:three_prime_UTR |
| TGTAAGTTTGTCTACAAAGT+AGG | 0.397876 | 4_1:+74333104 | Msa0571630:three_prime_UTR |
| AATCTGCAATCTATACATAA+AGG | 0.413171 | 4_1:-74331262 | None:intergenic |
| CAATAACTATCCTTCCTTCC+CGG | 0.417908 | 4_1:-74331597 | None:intergenic |
| CAAGTCACTCATGGAATTGA+TGG | 0.419008 | 4_1:+74330496 | Msa0571630:CDS |
| AGCATCAAGTGGTCTTGGTC+TGG | 0.420894 | 4_1:+74330625 | Msa0571630:CDS |
| TCAGGAGCATCAAGTGGTCT+TGG | 0.423419 | 4_1:+74330620 | Msa0571630:intron |
| GTATCTTTGGCTAAAGAAGT+TGG | 0.424566 | 4_1:-74333051 | None:intergenic |
| CGGCACCATGGCTATTTCAA+TGG | 0.427179 | 4_1:+74332315 | Msa0571630:three_prime_UTR |
| TTTCTTAATGGATGCTCCGC+TGG | 0.427481 | 4_1:-74330267 | None:intergenic |
| CAAGCGCCTTGAAAGCTCAT+TGG | 0.429868 | 4_1:-74331909 | None:intergenic |
| TATCTTTGGCTAAAGAAGTT+GGG | 0.430163 | 4_1:-74333050 | None:intergenic |
| AATAAAATCTGTGCATCCAT+TGG | 0.433029 | 4_1:+74331005 | Msa0571630:three_prime_UTR |
| AAACTGTAAGGGAATGCAAC+CGG | 0.434447 | 4_1:+74331578 | Msa0571630:three_prime_UTR |
| AACTTGGTTCTTGAAATTGT+TGG | 0.434767 | 4_1:-74331182 | None:intergenic |
| AACAATTTCAAGAACCAAGT+TGG | 0.449123 | 4_1:+74331184 | Msa0571630:three_prime_UTR |
| GTGCATCCATTGGAATTTGT+AGG | 0.458805 | 4_1:+74331015 | Msa0571630:three_prime_UTR |
| TGTCAGAAGATCTAGATAGA+TGG | 0.460126 | 4_1:+74331095 | Msa0571630:three_prime_UTR |
| TGAGCTTTCAAGGCGCTTGA+AGG | 0.461379 | 4_1:+74331913 | Msa0571630:three_prime_UTR |
| CATCTCAAACCTGTAATGAA+TGG | 0.462313 | 4_1:-74333268 | None:intergenic |
| ATTGGTTGGAAAGGACCATC+TGG | 0.466925 | 4_1:+74330448 | Msa0571630:CDS |
| TACATGTTGTTATGGCAGTT+AGG | 0.474096 | 4_1:+74330678 | Msa0571630:CDS |
| ATGTGGTTTATTGGTTGGAA+AGG | 0.477378 | 4_1:+74330439 | Msa0571630:CDS |
| TAACAATTGTACCAGGATGA+AGG | 0.477833 | 4_1:-74332281 | None:intergenic |
| AAAACATCAATCTTGGCAGC+TGG | 0.478183 | 4_1:-74330749 | None:intergenic |
| ATAATATGAATCCATATGTA+TGG | 0.484005 | 4_1:-74330870 | None:intergenic |
| TCCTTTGTTTGACAGGAAGA+AGG | 0.489471 | 4_1:+74332237 | Msa0571630:intron |
| GCGTGGTGTACATGTTGTTA+TGG | 0.496049 | 4_1:+74330670 | Msa0571630:CDS |
| AATTCCATGAGTGACTTGTT+CGG | 0.496592 | 4_1:-74330491 | None:intergenic |
| TTTCATTCAGAGTTAGTGCT+TGG | 0.497477 | 4_1:-74333376 | None:intergenic |
| GCAGTTTGCAACCAATCACT+TGG | 0.498350 | 4_1:+74331382 | Msa0571630:three_prime_UTR |
| TGCATCCATTGGAATTTGTA+GGG | 0.502981 | 4_1:+74331016 | Msa0571630:three_prime_UTR |
| TTGTCTTGAGAAAGCATGAA+TGG | 0.505638 | 4_1:-74331350 | None:intergenic |
| TTGTCTACAAAGTAGGTTTG+AGG | 0.516166 | 4_1:+74333111 | Msa0571630:three_prime_UTR |
| TGCATTGCATCCACAGGTCA+AGG | 0.524363 | 4_1:+74332987 | Msa0571630:three_prime_UTR |
| AAATTGGTACTTGAAATTGT+CGG | 0.527541 | 4_1:+74330917 | Msa0571630:three_prime_UTR |
| TGCAGCCATTGCTAATATGG+TGG | 0.530297 | 4_1:+74332786 | Msa0571630:intron |
| GCAGCCATTGCTAATATGGT+GGG | 0.536064 | 4_1:+74332787 | Msa0571630:intron |
| TCTCTCACTGCAATCATCAC+TGG | 0.540397 | 4_1:+74330523 | Msa0571630:CDS |
| AACTGTAAGGGAATGCAACC+GGG | 0.543989 | 4_1:+74331579 | Msa0571630:three_prime_UTR |
| ACTGTTAACTCCCTTCATCC+TGG | 0.557521 | 4_1:+74332270 | Msa0571630:three_prime_UTR |
| GGGAATGCAACCGGGAAGGA+AGG | 0.558048 | 4_1:+74331587 | Msa0571630:three_prime_UTR |
| TTTAGCCAAAGATACAAAGC+TGG | 0.558369 | 4_1:+74333059 | Msa0571630:three_prime_UTR |
| CATTCATTACAGGTTTGAGA+TGG | 0.558702 | 4_1:+74333269 | Msa0571630:three_prime_UTR |
| TTACCTTGCATTGCATCCAC+AGG | 0.567550 | 4_1:+74332981 | Msa0571630:three_prime_UTR |
| TTAAAGATTTCGATAACGCA+AGG | 0.569339 | 4_1:-74330957 | None:intergenic |
| CAGTTTGCAACCAATCACTT+GGG | 0.575672 | 4_1:+74331383 | Msa0571630:three_prime_UTR |
| AACAATTGTACCAGGATGAA+GGG | 0.577686 | 4_1:-74332280 | None:intergenic |
| TCTAACAGTATACAATGCAA+TGG | 0.581686 | 4_1:-74333349 | None:intergenic |
| AATGCAATGGAATGCTACAA+TGG | 0.586546 | 4_1:-74333336 | None:intergenic |
| TAATTTGCTAATGATCGAGT+GGG | 0.594217 | 4_1:-74333424 | None:intergenic |
| ACTGCCGAACAAGTCACTCA+TGG | 0.598804 | 4_1:+74330487 | Msa0571630:CDS |
| TAAAGATTTCGATAACGCAA+GGG | 0.601592 | 4_1:-74330956 | None:intergenic |
| AGTGATGATTGCAGTGAGAG+AGG | 0.602845 | 4_1:-74330521 | None:intergenic |
| CTAGTCCCTACAAATTCCAA+TGG | 0.603304 | 4_1:-74331021 | None:intergenic |
| ATAATTTGCTAATGATCGAG+TGG | 0.606772 | 4_1:-74333425 | None:intergenic |
| ATATTTGTAACAATTGTACC+AGG | 0.620073 | 4_1:-74332288 | None:intergenic |
| TGTTACATTAGAATATTGAG+TGG | 0.620095 | 4_1:-74330839 | None:intergenic |
| ACAAATATTCTGCGGCACCA+TGG | 0.621330 | 4_1:+74332303 | Msa0571630:three_prime_UTR |
| GATAGTTATTGTATCATCAG+AGG | 0.626892 | 4_1:+74331609 | Msa0571630:three_prime_UTR |
| GAGTGAATAAATAACCAACT+TGG | 0.630102 | 4_1:-74331198 | None:intergenic |
| CTTGCCCACCATATTAGCAA+TGG | 0.631089 | 4_1:-74332791 | None:intergenic |
| CCAGATATACCCTTGACCTG+TGG | 0.633382 | 4_1:-74332997 | None:intergenic |
| GCATTGCATCCACAGGTCAA+GGG | 0.636460 | 4_1:+74332988 | Msa0571630:three_prime_UTR |
| ACTAACCATTGAAATAGCCA+TGG | 0.642396 | 4_1:-74332320 | None:intergenic |
| CAATTGTTACAAATATTCTG+CGG | 0.643492 | 4_1:+74332295 | Msa0571630:three_prime_UTR |
| AAGTAACAATGCAGGGACGA+TGG | 0.645747 | 4_1:+74331322 | Msa0571630:three_prime_UTR |
| GTCTTGGTCTGGAAACAACA+AGG | 0.648423 | 4_1:+74330636 | Msa0571630:CDS |
| GATGAAGCTGAGAATCCAGA+TGG | 0.651050 | 4_1:-74330463 | None:intergenic |
| ACAAGGATTCTTGCTATGCG+TGG | 0.652761 | 4_1:+74330653 | Msa0571630:CDS |
| GTAAGGGAATGCAACCGGGA+AGG | 0.654933 | 4_1:+74331583 | Msa0571630:three_prime_UTR |
| TACCAGTAATAATGTTCCAG+CGG | 0.662489 | 4_1:+74330251 | Msa0571630:five_prime_UTR |
| TGACCTGTGGATGCAATGCA+AGG | 0.671162 | 4_1:-74332984 | None:intergenic |
| AATATTGAGTGGAAGACCAG+AGG | 0.674080 | 4_1:-74330828 | None:intergenic |
| ATACTTTACGGATAGCAACA+AGG | 0.684887 | 4_1:+74333023 | Msa0571630:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATTATACCAAAAAAAA+AGG | + | chr4_1:74330294-74330313 | Msa0571630:five_prime_UTR | 10.0% |
| !!! | AAAAAAATACTTAATTCTTT+TGG | - | chr4_1:74332498-74332517 | None:intergenic | 10.0% |
| !! | TTATTTATCTTAATAACTAA+AGG | - | chr4_1:74332566-74332585 | None:intergenic | 10.0% |
| !! | TATTAAGATAAATAAATAGT+TGG | + | chr4_1:74332571-74332590 | Msa0571630:intron | 10.0% |
| !!! | TAATAAAAGTTGTTTCTTAA+TGG | - | chr4_1:74330282-74330301 | None:intergenic | 15.0% |
| !!! | AAAAGTATTTCCTTTTTTTT+TGG | - | chr4_1:74330307-74330326 | None:intergenic | 15.0% |
| !!! | TTAATGATTTCATTATTTTC+AGG | + | chr4_1:74330602-74330621 | Msa0571630:intron | 15.0% |
| !!! | ATATTTCCAAATTTTACAAT+AGG | + | chr4_1:74332639-74332658 | Msa0571630:intron | 15.0% |
| !! | TTTCAATTATGTAATGTTTC+TGG | + | chr4_1:74330216-74330235 | Msa0571630:five_prime_UTR | 20.0% |
| !! | TATCAAAGAAACTTTACTTA+AGG | + | chr4_1:74330721-74330740 | Msa0571630:CDS | 20.0% |
| !! | ATAATATGAATCCATATGTA+TGG | - | chr4_1:74330873-74330892 | None:intergenic | 20.0% |
| !!! | GATCATTTTGTAATATTGAT+AGG | + | chr4_1:74331149-74331168 | Msa0571630:three_prime_UTR | 20.0% |
| !! | AAGATATATGTTATAATGTG+AGG | - | chr4_1:74331425-74331444 | None:intergenic | 20.0% |
| !! | ATGTACAAAACAAAAATTGA+AGG | + | chr4_1:74331490-74331509 | Msa0571630:intron | 20.0% |
| !!! | AATATTTGATAGTATTTTGC+AGG | + | chr4_1:74331514-74331533 | Msa0571630:intron | 20.0% |
| !!! | TTTTCATAGTCTCTAATAAA+AGG | - | chr4_1:74331558-74331577 | None:intergenic | 20.0% |
| !! | TAAACTCGATATTAATAAGT+TGG | - | chr4_1:74332078-74332097 | None:intergenic | 20.0% |
| !!! | AATACTTAATTCTTTTGGTT+TGG | - | chr4_1:74332493-74332512 | None:intergenic | 20.0% |
| !! | AATAACTAAAGGATAACTTT+GGG | - | chr4_1:74332555-74332574 | None:intergenic | 20.0% |
| !! | TAATAACTAAAGGATAACTT+TGG | - | chr4_1:74332556-74332575 | None:intergenic | 20.0% |
| !! | TAAGATCCTATTGTAAAATT+TGG | - | chr4_1:74332648-74332667 | None:intergenic | 20.0% |
| !! | AAATTATGTACAACAATAAC+CGG | - | chr4_1:74332726-74332745 | None:intergenic | 20.0% |
| !! | CAATTCAATTAGTAAAAATC+TGG | - | chr4_1:74332924-74332943 | None:intergenic | 20.0% |
| !!! | GATTTTTACTAATTGAATTG+TGG | + | chr4_1:74332924-74332943 | Msa0571630:intron | 20.0% |
| !! | ACATTTTTACAGTCAAAACA+AGG | - | chr4_1:74330423-74330442 | None:intergenic | 25.0% |
| !!! | TTGTTTTGACTGTAAAAATG+TGG | + | chr4_1:74330422-74330441 | Msa0571630:exon | 25.0% |
| ! | ACTGTAAAAATGTGGTTTAT+TGG | + | chr4_1:74330430-74330449 | Msa0571630:exon | 25.0% |
| ! | TAAAAATGTGGTTTATTGGT+TGG | + | chr4_1:74330434-74330453 | Msa0571630:exon | 25.0% |
| ! | TAACTCAAAAACATCAATCT+TGG | - | chr4_1:74330759-74330778 | None:intergenic | 25.0% |
| ! | TGTTACATTAGAATATTGAG+TGG | - | chr4_1:74330842-74330861 | None:intergenic | 25.0% |
| ! | ACAATTTCTAACCATACATA+TGG | + | chr4_1:74330859-74330878 | Msa0571630:exon | 25.0% |
| ! | TTTCGACTAAATACCTAAAT+TGG | + | chr4_1:74330901-74330920 | Msa0571630:three_prime_UTR | 25.0% |
| !! | ACAATTTCAAGTACCAATTT+AGG | - | chr4_1:74330917-74330936 | None:intergenic | 25.0% |
| ! | AAATTGGTACTTGAAATTGT+CGG | + | chr4_1:74330917-74330936 | Msa0571630:three_prime_UTR | 25.0% |
| ! | AATCTGCAATCTATACATAA+AGG | - | chr4_1:74331265-74331284 | None:intergenic | 25.0% |
| ! | TTATGTATAGATTGCAGATT+TGG | + | chr4_1:74331265-74331284 | Msa0571630:three_prime_UTR | 25.0% |
| ! | ATATTAATTACCCAAGTGAT+TGG | - | chr4_1:74331396-74331415 | None:intergenic | 25.0% |
| ! | AGACTATGAAAAAAACTGTA+AGG | + | chr4_1:74331566-74331585 | Msa0571630:three_prime_UTR | 25.0% |
| ! | GACTATGAAAAAAACTGTAA+GGG | + | chr4_1:74331567-74331586 | Msa0571630:three_prime_UTR | 25.0% |
| !! | ACAGATTTTCATATAGTGAA+GGG | + | chr4_1:74331635-74331654 | Msa0571630:three_prime_UTR | 25.0% |
| ! | AATCAGAGTAATTATCTAGT+TGG | + | chr4_1:74331683-74331702 | Msa0571630:intron | 25.0% |
| ! | GTGGGAAATTATAAAATTCT+GGG | - | chr4_1:74331814-74331833 | None:intergenic | 25.0% |
| ! | AGTGGGAAATTATAAAATTC+TGG | - | chr4_1:74331815-74331834 | None:intergenic | 25.0% |
| ! | TATCTGTAAAGAATCAAACA+GGG | - | chr4_1:74331839-74331858 | None:intergenic | 25.0% |
| ! | TCGTAAGATTCAATCTTATT+TGG | + | chr4_1:74331968-74331987 | Msa0571630:intron | 25.0% |
| ! | ATATTTGTAACAATTGTACC+AGG | - | chr4_1:74332291-74332310 | None:intergenic | 25.0% |
| ! | CAATTGTTACAAATATTCTG+CGG | + | chr4_1:74332295-74332314 | Msa0571630:three_prime_UTR | 25.0% |
| ! | TAATCAGCAATAGTTGAAAA+TGG | - | chr4_1:74332353-74332372 | None:intergenic | 25.0% |
| !! | GATTAAGTATCCTTTTTGTT+TGG | + | chr4_1:74332368-74332387 | Msa0571630:intron | 25.0% |
| !!! | TACATAATTTCTCCTTGTTT+TGG | + | chr4_1:74332736-74332755 | Msa0571630:intron | 25.0% |
| ! | ATGAACAAAAATCCAAAACA+AGG | - | chr4_1:74332751-74332770 | None:intergenic | 25.0% |
| ! | TATATCTGGTGAATACTTTA+CGG | + | chr4_1:74333011-74333030 | Msa0571630:three_prime_UTR | 25.0% |
| !! | ACTTAATTCCCATAGTTTTT+GGG | - | chr4_1:74333085-74333104 | None:intergenic | 25.0% |
| !! | ATGTAAAACTTTTCATCACT+AGG | - | chr4_1:74333213-74333232 | None:intergenic | 25.0% |
| ! | TTCATCTAACTCAGTTTTTG+AGG | - | chr4_1:74330582-74330601 | None:intergenic | 30.0% |
| AATTGGTACTTGAAATTGTC+GGG | + | chr4_1:74330918-74330937 | Msa0571630:three_prime_UTR | 30.0% | |
| TAAAGATTTCGATAACGCAA+GGG | - | chr4_1:74330959-74330978 | None:intergenic | 30.0% | |
| TTAAAGATTTCGATAACGCA+AGG | - | chr4_1:74330960-74330979 | None:intergenic | 30.0% | |
| AATAAAATCTGTGCATCCAT+TGG | + | chr4_1:74331005-74331024 | Msa0571630:three_prime_UTR | 30.0% | |
| !! | TGATCTCTAGAATTGCTAAA+TGG | - | chr4_1:74331134-74331153 | None:intergenic | 30.0% |
| ! | AACTTGGTTCTTGAAATTGT+TGG | - | chr4_1:74331185-74331204 | None:intergenic | 30.0% |
| AACAATTTCAAGAACCAAGT+TGG | + | chr4_1:74331184-74331203 | Msa0571630:three_prime_UTR | 30.0% | |
| GAGTGAATAAATAACCAACT+TGG | - | chr4_1:74331201-74331220 | None:intergenic | 30.0% | |
| !!! | TTCTTTTCAAGTAACAATGC+AGG | + | chr4_1:74331314-74331333 | Msa0571630:three_prime_UTR | 30.0% |
| !!! | TCTTTTCAAGTAACAATGCA+GGG | + | chr4_1:74331315-74331334 | Msa0571630:three_prime_UTR | 30.0% |
| AAAGGTTTGTCAACAGAAAA+TGG | - | chr4_1:74331540-74331559 | None:intergenic | 30.0% | |
| GATAGTTATTGTATCATCAG+AGG | + | chr4_1:74331609-74331628 | Msa0571630:three_prime_UTR | 30.0% | |
| ! | CACAGATTTTCATATAGTGA+AGG | + | chr4_1:74331634-74331653 | Msa0571630:three_prime_UTR | 30.0% |
| GTATCTGTAAAGAATCAAAC+AGG | - | chr4_1:74331840-74331859 | None:intergenic | 30.0% | |
| !! | TACAGCAGTTATTTTGCTTA+TGG | + | chr4_1:74331857-74331876 | Msa0571630:three_prime_UTR | 30.0% |
| ATGCAAAATATTTGCAAGCT+TGG | - | chr4_1:74331888-74331907 | None:intergenic | 30.0% | |
| ! | TGTGTTTAAAGCAGTCTTAT+GGG | + | chr4_1:74332048-74332067 | Msa0571630:intron | 30.0% |
| TGAAGCAGTCTATTTACAAT+GGG | - | chr4_1:74332152-74332171 | None:intergenic | 30.0% | |
| TAAATAGACTGCTTCAGTAA+TGG | + | chr4_1:74332156-74332175 | Msa0571630:intron | 30.0% | |
| TCAAACAAAGGAATATGCAA+GGG | - | chr4_1:74332229-74332248 | None:intergenic | 30.0% | |
| !! | GTATCCTTTTTGTTTGGAAT+AGG | + | chr4_1:74332374-74332393 | Msa0571630:intron | 30.0% |
| TCAATGGAGTCTTACAAATA+GGG | - | chr4_1:74332470-74332489 | None:intergenic | 30.0% | |
| !!! | AATTCTTTTGGTTTGGTCAA+TGG | - | chr4_1:74332486-74332505 | None:intergenic | 30.0% |
| !!! | GTTGGTCTTTTAATTCTCTT+TGG | + | chr4_1:74332589-74332608 | Msa0571630:intron | 30.0% |
| TAGGATCTTACAAATAGAGA+CGG | + | chr4_1:74332658-74332677 | Msa0571630:intron | 30.0% | |
| ! | ATACCTGTTGGACATTTTTA+AGG | - | chr4_1:74332822-74332841 | None:intergenic | 30.0% |
| TATCTTTGGCTAAAGAAGTT+GGG | - | chr4_1:74333053-74333072 | None:intergenic | 30.0% | |
| ! | CACTTAATTCCCATAGTTTT+TGG | - | chr4_1:74333086-74333105 | None:intergenic | 30.0% |
| TGTAAGTTTGTCTACAAAGT+AGG | + | chr4_1:74333104-74333123 | Msa0571630:three_prime_UTR | 30.0% | |
| TCTAACAGTATACAATGCAA+TGG | - | chr4_1:74333352-74333371 | None:intergenic | 30.0% | |
| !! | TAATTTGCTAATGATCGAGT+GGG | - | chr4_1:74333427-74333446 | None:intergenic | 30.0% |
| !! | ATAATTTGCTAATGATCGAG+TGG | - | chr4_1:74333428-74333447 | None:intergenic | 30.0% |
| TACCAGTAATAATGTTCCAG+CGG | + | chr4_1:74330251-74330270 | Msa0571630:five_prime_UTR | 35.0% | |
| ! | ATGTGGTTTATTGGTTGGAA+AGG | + | chr4_1:74330439-74330458 | Msa0571630:CDS | 35.0% |
| !! | AATTCCATGAGTGACTTGTT+CGG | - | chr4_1:74330494-74330513 | None:intergenic | 35.0% |
| !!! | TTATTTTCAGGAGCATCAAG+TGG | + | chr4_1:74330614-74330633 | Msa0571630:intron | 35.0% |
| TACATGTTGTTATGGCAGTT+AGG | + | chr4_1:74330678-74330697 | Msa0571630:CDS | 35.0% | |
| GCAGTTAGGAATGTGAAAAA+TGG | + | chr4_1:74330692-74330711 | Msa0571630:CDS | 35.0% | |
| TGCATCCATTGGAATTTGTA+GGG | + | chr4_1:74331016-74331035 | Msa0571630:three_prime_UTR | 35.0% | |
| TGTCAGAAGATCTAGATAGA+TGG | + | chr4_1:74331095-74331114 | Msa0571630:three_prime_UTR | 35.0% | |
| ! | TTGTCTTGAGAAAGCATGAA+TGG | - | chr4_1:74331353-74331372 | None:intergenic | 35.0% |
| TCTTTCCTTTATCTGCTACA+AGG | + | chr4_1:74331727-74331746 | Msa0571630:intron | 35.0% | |
| AAAGAATCAAACAGGGAAGT+GGG | - | chr4_1:74331832-74331851 | None:intergenic | 35.0% | |
| TAAAGAATCAAACAGGGAAG+TGG | - | chr4_1:74331833-74331852 | None:intergenic | 35.0% | |
| TTACCATCACGTTACTCTAA+CGG | - | chr4_1:74331999-74332018 | None:intergenic | 35.0% | |
| ! | TAAGACTGCTTTAAACACAG+TGG | - | chr4_1:74332047-74332066 | None:intergenic | 35.0% |
| ! | CTGTGTTTAAAGCAGTCTTA+TGG | + | chr4_1:74332047-74332066 | Msa0571630:intron | 35.0% |
| CGAGTTTATTGAAATCCAAG+CGG | + | chr4_1:74332090-74332109 | Msa0571630:intron | 35.0% | |
| CTGAAGCAGTCTATTTACAA+TGG | - | chr4_1:74332153-74332172 | None:intergenic | 35.0% | |
| TGACTAGACGATGAACTTAT+TGG | + | chr4_1:74332186-74332205 | Msa0571630:intron | 35.0% | |
| GTCAAACAAAGGAATATGCA+AGG | - | chr4_1:74332230-74332249 | None:intergenic | 35.0% | |
| ! | TGCATATTCCTTTGTTTGAC+AGG | + | chr4_1:74332230-74332249 | Msa0571630:intron | 35.0% |
| AACAATTGTACCAGGATGAA+GGG | - | chr4_1:74332283-74332302 | None:intergenic | 35.0% | |
| TAACAATTGTACCAGGATGA+AGG | - | chr4_1:74332284-74332303 | None:intergenic | 35.0% | |
| ACTAACCATTGAAATAGCCA+TGG | - | chr4_1:74332323-74332342 | None:intergenic | 35.0% | |
| CAGACCTATTCCAAACAAAA+AGG | - | chr4_1:74332381-74332400 | None:intergenic | 35.0% | |
| AATAGGTCTGATGTCCTATT+CGG | + | chr4_1:74332391-74332410 | Msa0571630:intron | 35.0% | |
| GTCAATGGAGTCTTACAAAT+AGG | - | chr4_1:74332471-74332490 | None:intergenic | 35.0% | |
| TATGTACGAGTCATACTAAC+CGG | + | chr4_1:74332704-74332723 | Msa0571630:intron | 35.0% | |
| ! | TTTTGCAGCCATTGCTAATA+TGG | + | chr4_1:74332783-74332802 | Msa0571630:intron | 35.0% |
| CTTCCTTAAAAATGTCCAAC+AGG | + | chr4_1:74332816-74332835 | Msa0571630:three_prime_UTR | 35.0% | |
| ACTAAAAAATTGTGAGCCTG+TGG | - | chr4_1:74332849-74332868 | None:intergenic | 35.0% | |
| ATACTTTACGGATAGCAACA+AGG | + | chr4_1:74333023-74333042 | Msa0571630:three_prime_UTR | 35.0% | |
| GTATCTTTGGCTAAAGAAGT+TGG | - | chr4_1:74333054-74333073 | None:intergenic | 35.0% | |
| TTTAGCCAAAGATACAAAGC+TGG | + | chr4_1:74333059-74333078 | Msa0571630:three_prime_UTR | 35.0% | |
| TTGTCTACAAAGTAGGTTTG+AGG | + | chr4_1:74333111-74333130 | Msa0571630:three_prime_UTR | 35.0% | |
| ! | TCAGAGTATCCATTCATTAC+AGG | + | chr4_1:74333259-74333278 | Msa0571630:three_prime_UTR | 35.0% |
| CATCTCAAACCTGTAATGAA+TGG | - | chr4_1:74333271-74333290 | None:intergenic | 35.0% | |
| CATTCATTACAGGTTTGAGA+TGG | + | chr4_1:74333269-74333288 | Msa0571630:three_prime_UTR | 35.0% | |
| AATGCAATGGAATGCTACAA+TGG | - | chr4_1:74333339-74333358 | None:intergenic | 35.0% | |
| TTTCATTCAGAGTTAGTGCT+TGG | - | chr4_1:74333379-74333398 | None:intergenic | 35.0% | |
| CAAGTCACTCATGGAATTGA+TGG | + | chr4_1:74330496-74330515 | Msa0571630:CDS | 40.0% | |
| AAAACATCAATCTTGGCAGC+TGG | - | chr4_1:74330752-74330771 | None:intergenic | 40.0% | |
| ! | TTAGCTCTTTCGCATCTGTT+AGG | + | chr4_1:74330783-74330802 | Msa0571630:CDS | 40.0% |
| !!! | GCAGCAGATTTTAATTCCTC+TGG | + | chr4_1:74330812-74330831 | Msa0571630:CDS | 40.0% |
| AATATTGAGTGGAAGACCAG+AGG | - | chr4_1:74330831-74330850 | None:intergenic | 40.0% | |
| GTGCATCCATTGGAATTTGT+AGG | + | chr4_1:74331015-74331034 | Msa0571630:three_prime_UTR | 40.0% | |
| CTAGTCCCTACAAATTCCAA+TGG | - | chr4_1:74331024-74331043 | None:intergenic | 40.0% | |
| CAGTTTGCAACCAATCACTT+GGG | + | chr4_1:74331383-74331402 | Msa0571630:three_prime_UTR | 40.0% | |
| AAACTGTAAGGGAATGCAAC+CGG | + | chr4_1:74331578-74331597 | Msa0571630:three_prime_UTR | 40.0% | |
| CAATAACTATCCTTCCTTCC+CGG | - | chr4_1:74331600-74331619 | None:intergenic | 40.0% | |
| ! | ATGAGCCTTGTAGCAGATAA+AGG | - | chr4_1:74331735-74331754 | None:intergenic | 40.0% |
| AGCAGTCTATTTACAATGGG+AGG | - | chr4_1:74332149-74332168 | None:intergenic | 40.0% | |
| ! | TCCTTTGTTTGACAGGAAGA+AGG | + | chr4_1:74332237-74332256 | Msa0571630:intron | 40.0% |
| TCCTTCTTCCTGTCAAACAA+AGG | - | chr4_1:74332241-74332260 | None:intergenic | 40.0% | |
| ! | TGTGGTGACACTTCTTTTGT+AGG | + | chr4_1:74332942-74332961 | Msa0571630:intron | 40.0% |
| ! | GTGGTGACACTTCTTTTGTA+GGG | + | chr4_1:74332943-74332962 | Msa0571630:intron | 40.0% |
| AAAGCTGGCCCAAAAACTAT+GGG | + | chr4_1:74333074-74333093 | Msa0571630:three_prime_UTR | 40.0% | |
| CTCCGCTGGAACATTATTAC+TGG | - | chr4_1:74330256-74330275 | None:intergenic | 45.0% | |
| ! | TTTCTTAATGGATGCTCCGC+TGG | - | chr4_1:74330270-74330289 | None:intergenic | 45.0% |
| ATTGGTTGGAAAGGACCATC+TGG | + | chr4_1:74330448-74330467 | Msa0571630:CDS | 45.0% | |
| GATGAAGCTGAGAATCCAGA+TGG | - | chr4_1:74330466-74330485 | None:intergenic | 45.0% | |
| AGTGATGATTGCAGTGAGAG+AGG | - | chr4_1:74330524-74330543 | None:intergenic | 45.0% | |
| TCTCTCACTGCAATCATCAC+TGG | + | chr4_1:74330523-74330542 | Msa0571630:CDS | 45.0% | |
| GTCTTGGTCTGGAAACAACA+AGG | + | chr4_1:74330636-74330655 | Msa0571630:CDS | 45.0% | |
| ! | ACAAGGATTCTTGCTATGCG+TGG | + | chr4_1:74330653-74330672 | Msa0571630:CDS | 45.0% |
| GCGTGGTGTACATGTTGTTA+TGG | + | chr4_1:74330670-74330689 | Msa0571630:CDS | 45.0% | |
| AAGTAACAATGCAGGGACGA+TGG | + | chr4_1:74331322-74331341 | Msa0571630:three_prime_UTR | 45.0% | |
| GCAGTTTGCAACCAATCACT+TGG | + | chr4_1:74331382-74331401 | Msa0571630:three_prime_UTR | 45.0% | |
| AACTGTAAGGGAATGCAACC+GGG | + | chr4_1:74331579-74331598 | Msa0571630:three_prime_UTR | 45.0% | |
| TGCATGCCAATGAGCTTTCA+AGG | + | chr4_1:74331903-74331922 | Msa0571630:three_prime_UTR | 45.0% | |
| CAACCGTTAGAGTAACGTGA+TGG | + | chr4_1:74331993-74332012 | Msa0571630:intron | 45.0% | |
| ACGTGATGGTAACTCGTTGA+CGG | + | chr4_1:74332007-74332026 | Msa0571630:intron | 45.0% | |
| !! | ACGAGCTATTTTCTTCCGCT+TGG | - | chr4_1:74332108-74332127 | None:intergenic | 45.0% |
| ACTGTTAACTCCCTTCATCC+TGG | + | chr4_1:74332270-74332289 | Msa0571630:three_prime_UTR | 45.0% | |
| ACAAATATTCTGCGGCACCA+TGG | + | chr4_1:74332303-74332322 | Msa0571630:three_prime_UTR | 45.0% | |
| TCTGATGTCCTATTCGGTTC+TGG | + | chr4_1:74332397-74332416 | Msa0571630:intron | 45.0% | |
| ! | ATGTCCTATTCGGTTCTGGT+TGG | + | chr4_1:74332401-74332420 | Msa0571630:intron | 45.0% |
| ATGACCAACCAGAACCGAAT+AGG | - | chr4_1:74332408-74332427 | None:intergenic | 45.0% | |
| ! | TCGGTTCTGGTTGGTCATAT+TGG | + | chr4_1:74332410-74332429 | Msa0571630:intron | 45.0% |
| TGCAGCCATTGCTAATATGG+TGG | + | chr4_1:74332786-74332805 | Msa0571630:intron | 45.0% | |
| GCAGCCATTGCTAATATGGT+GGG | + | chr4_1:74332787-74332806 | Msa0571630:intron | 45.0% | |
| CTTGCCCACCATATTAGCAA+TGG | - | chr4_1:74332794-74332813 | None:intergenic | 45.0% | |
| ! | TCCAACAGGTATTTTGCCAC+AGG | + | chr4_1:74332830-74332849 | Msa0571630:intron | 45.0% |
| TTACCTTGCATTGCATCCAC+AGG | + | chr4_1:74332981-74333000 | Msa0571630:three_prime_UTR | 45.0% | |
| ! | TTGGGCCAGCTTTGTATCTT+TGG | - | chr4_1:74333067-74333086 | None:intergenic | 45.0% |
| CAAAGCTGGCCCAAAAACTA+TGG | + | chr4_1:74333073-74333092 | Msa0571630:three_prime_UTR | 45.0% | |
| ACTGCCGAACAAGTCACTCA+TGG | + | chr4_1:74330487-74330506 | Msa0571630:CDS | 50.0% | |
| !! | TCAGGAGCATCAAGTGGTCT+TGG | + | chr4_1:74330620-74330639 | Msa0571630:intron | 50.0% |
| ! | AGCATCAAGTGGTCTTGGTC+TGG | + | chr4_1:74330625-74330644 | Msa0571630:CDS | 50.0% |
| CAAGCGCCTTGAAAGCTCAT+TGG | - | chr4_1:74331912-74331931 | None:intergenic | 50.0% | |
| ! | TGAGCTTTCAAGGCGCTTGA+AGG | + | chr4_1:74331913-74331932 | Msa0571630:three_prime_UTR | 50.0% |
| ! | CGGCACCATGGCTATTTCAA+TGG | + | chr4_1:74332315-74332334 | Msa0571630:three_prime_UTR | 50.0% |
| GCCTGTGGCAAAATACCTGT+TGG | - | chr4_1:74332834-74332853 | None:intergenic | 50.0% | |
| TGACCTGTGGATGCAATGCA+AGG | - | chr4_1:74332987-74333006 | None:intergenic | 50.0% | |
| TGCATTGCATCCACAGGTCA+AGG | + | chr4_1:74332987-74333006 | Msa0571630:three_prime_UTR | 50.0% | |
| GCATTGCATCCACAGGTCAA+GGG | + | chr4_1:74332988-74333007 | Msa0571630:three_prime_UTR | 50.0% | |
| CCAGATATACCCTTGACCTG+TGG | - | chr4_1:74333000-74333019 | None:intergenic | 50.0% | |
| ! | CCACAGGTCAAGGGTATATC+TGG | + | chr4_1:74332997-74333016 | Msa0571630:three_prime_UTR | 50.0% |
| GTAAGGGAATGCAACCGGGA+AGG | + | chr4_1:74331583-74331602 | Msa0571630:three_prime_UTR | 55.0% | |
| GGGAATGCAACCGGGAAGGA+AGG | + | chr4_1:74331587-74331606 | Msa0571630:three_prime_UTR | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 74330197 | 74333464 | 74330197 | ID=Msa0571630;Name=Msa0571630 |
| chr4_1 | mRNA | 74330197 | 74333464 | 74330197 | ID=Msa0571630-mRNA-1;Parent=Msa0571630;Name=Msa0571630-mRNA-1;_AED=0.10;_eAED=0.10;_QI=242|1|1|1|1|0.85|7|1411|113 |
| chr4_1 | exon | 74330197 | 74330544 | 74330197 | ID=Msa0571630-mRNA-1:exon:25617;Parent=Msa0571630-mRNA-1 |
| chr4_1 | exon | 74330624 | 74331404 | 74330624 | ID=Msa0571630-mRNA-1:exon:25618;Parent=Msa0571630-mRNA-1 |
| chr4_1 | exon | 74331536 | 74331689 | 74331536 | ID=Msa0571630-mRNA-1:exon:25619;Parent=Msa0571630-mRNA-1 |
| chr4_1 | exon | 74331856 | 74331934 | 74331856 | ID=Msa0571630-mRNA-1:exon:25620;Parent=Msa0571630-mRNA-1 |
| chr4_1 | exon | 74332252 | 74332336 | 74332252 | ID=Msa0571630-mRNA-1:exon:25621;Parent=Msa0571630-mRNA-1 |
| chr4_1 | exon | 74332791 | 74332837 | 74332791 | ID=Msa0571630-mRNA-1:exon:25622;Parent=Msa0571630-mRNA-1 |
| chr4_1 | exon | 74332964 | 74333464 | 74332964 | ID=Msa0571630-mRNA-1:exon:25623;Parent=Msa0571630-mRNA-1 |
| chr4_1 | five_prime_UTR | 74330197 | 74330438 | 74330197 | ID=Msa0571630-mRNA-1:five_prime_utr;Parent=Msa0571630-mRNA-1 |
| chr4_1 | CDS | 74330439 | 74330544 | 74330439 | ID=Msa0571630-mRNA-1:cds;Parent=Msa0571630-mRNA-1 |
| chr4_1 | CDS | 74330624 | 74330859 | 74330624 | ID=Msa0571630-mRNA-1:cds;Parent=Msa0571630-mRNA-1 |
| chr4_1 | three_prime_UTR | 74330860 | 74331404 | 74330860 | ID=Msa0571630-mRNA-1:three_prime_utr;Parent=Msa0571630-mRNA-1 |
| chr4_1 | three_prime_UTR | 74331536 | 74331689 | 74331536 | ID=Msa0571630-mRNA-1:three_prime_utr;Parent=Msa0571630-mRNA-1 |
| chr4_1 | three_prime_UTR | 74331856 | 74331934 | 74331856 | ID=Msa0571630-mRNA-1:three_prime_utr;Parent=Msa0571630-mRNA-1 |
| chr4_1 | three_prime_UTR | 74332252 | 74332336 | 74332252 | ID=Msa0571630-mRNA-1:three_prime_utr;Parent=Msa0571630-mRNA-1 |
| chr4_1 | three_prime_UTR | 74332791 | 74332837 | 74332791 | ID=Msa0571630-mRNA-1:three_prime_utr;Parent=Msa0571630-mRNA-1 |
| chr4_1 | three_prime_UTR | 74332964 | 74333464 | 74332964 | ID=Msa0571630-mRNA-1:three_prime_utr;Parent=Msa0571630-mRNA-1 |
| Gene Sequence |
| Protein sequence |
