Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0357730 | KEH33239.1 | 88.235 | 153 | 13 | 2 | 1 | 153 | 8 | 155 | 2.53e-90 | 270 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0357730 | sp|Q9FKI4|NAA10_ARATH | 45.513 | 156 | 72 | 5 | 6 | 150 | 2 | 155 | 2.68e-30 | 111 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0357730 | A0A072UTR7 | 88.235 | 153 | 13 | 2 | 1 | 153 | 8 | 155 | 1.21e-90 | 270 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0357730 | TR | GNAT |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0357650 | Msa0357730 | 0.800872 | 1.175382e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0357730 | MtrunA17_Chr3g0088851 | 87.879 | 99 | 10 | 1 | 1 | 99 | 1 | 97 | 1.71e-59 | 180 |
| Msa0357730 | MtrunA17_Chr3g0090311 | 48.408 | 157 | 68 | 5 | 6 | 151 | 2 | 156 | 1.52e-35 | 121 |
| Msa0357730 | MtrunA17_Chr3g0098461 | 39.490 | 157 | 84 | 6 | 1 | 151 | 1 | 152 | 4.79e-21 | 84.0 |
| Msa0357730 | MtrunA17_Chr7g0275421 | 28.070 | 114 | 78 | 3 | 35 | 146 | 24 | 135 | 4.22e-11 | 57.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0357730 | AT5G13780.1 | 45.513 | 156 | 72 | 5 | 6 | 150 | 2 | 155 | 2.73e-31 | 111 |
| Msa0357730 | AT1G03150.1 | 28.947 | 114 | 77 | 3 | 35 | 146 | 39 | 150 | 3.74e-12 | 61.2 |
Find 72 sgRNAs with CRISPR-Local
Find 235 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACCCGAAGTCCATTTATT+TGG | 0.199476 | 3_1:-41289391 | None:intergenic |
| TTCCACAATGTGCCAATATT+CGG | 0.287513 | 3_1:+41288968 | None:intergenic |
| AGGATGTCTTATGAACAATT+TGG | 0.318747 | 3_1:-41286640 | Msa0357730:three_prime_UTR |
| GACAGAGAGAACCAAATAAA+TGG | 0.319346 | 3_1:+41289380 | None:intergenic |
| CTCGTTACTCGCCCGAATAT+TGG | 0.335099 | 3_1:-41288980 | Msa0357730:CDS |
| ATGCATGCTTCAAAATATTA+AGG | 0.337012 | 3_1:+41286607 | None:intergenic |
| TGCATAAGAGTTGCAACATT+TGG | 0.337938 | 3_1:-41289034 | Msa0357730:CDS |
| CTGAGTAGTGAGAGGAAATA+TGG | 0.344451 | 3_1:-41286570 | Msa0357730:three_prime_UTR |
| GAGCTGCAGAGTTGCTCTTC+CGG | 0.345662 | 3_1:+41288093 | None:intergenic |
| TCCACAATGTGCCAATATTC+GGG | 0.349965 | 3_1:+41288969 | None:intergenic |
| CTAACCATGAAGCAGTTATA+AGG | 0.357105 | 3_1:-41289079 | Msa0357730:intron |
| TCTTGGTTTGTTTGAAAAGA+TGG | 0.363394 | 3_1:-41288072 | Msa0357730:CDS |
| TGCGTTAATCTTCAGTTTCA+AGG | 0.375277 | 3_1:-41289261 | Msa0357730:five_prime_UTR |
| TGCAACATTTGGAGACGTAT+TGG | 0.394327 | 3_1:-41289023 | Msa0357730:CDS |
| GAACCAAATAAATGGACTTC+GGG | 0.394753 | 3_1:+41289388 | None:intergenic |
| GATAGGTATGGTGAACGAAT+AGG | 0.421395 | 3_1:+41288840 | None:intergenic |
| TTCTTCAGCCAGTCAAGATT+AGG | 0.429891 | 3_1:-41286885 | Msa0357730:intron |
| CTCCTCATCATCAAAATACT+TGG | 0.430558 | 3_1:+41288025 | None:intergenic |
| ATAGGTATGGTGAACGAATA+GGG | 0.433258 | 3_1:+41288841 | None:intergenic |
| CTCTGAAGGTGAAGAGGAAG+AGG | 0.447607 | 3_1:-41288891 | Msa0357730:CDS |
| GTGGATCTGCTCCGAGCAAT+GGG | 0.452575 | 3_1:+41289307 | None:intergenic |
| CGCCCAAAACACCATGGAAA+AGG | 0.453353 | 3_1:-41288783 | Msa0357730:intron |
| CTTGGTTTGTTTGAAAAGAT+GGG | 0.459057 | 3_1:-41288071 | Msa0357730:CDS |
| AAGAGCAACTCTGCAGCTCT+TGG | 0.462439 | 3_1:-41288089 | Msa0357730:CDS |
| AAGACGTCTCAGTGCACGTC+CGG | 0.493597 | 3_1:-41288112 | Msa0357730:CDS |
| GACAAAACCTTCTCTGTGAA+AGG | 0.497172 | 3_1:+41289329 | None:intergenic |
| CATTTGGAGACGTATTGGAT+TGG | 0.499964 | 3_1:-41289018 | Msa0357730:CDS |
| ACAAAACCTTCTCTGTGAAA+GGG | 0.501016 | 3_1:+41289330 | None:intergenic |
| TTCTCTGTGAAAGGGTTTCG+CGG | 0.506992 | 3_1:+41289338 | None:intergenic |
| GAAGGTCTTCCTCCTCCTGC+GGG | 0.507846 | 3_1:+41286905 | None:intergenic |
| AGGAACAATGTCTTCAAAGA+AGG | 0.508100 | 3_1:-41289059 | Msa0357730:exon |
| GTTGCTTACCTCCTCTCTGA+AGG | 0.508220 | 3_1:-41288905 | Msa0357730:CDS |
| GATTTAACATGTAGTACTGC+AGG | 0.520464 | 3_1:-41286724 | Msa0357730:intron |
| AGAACCAAATAAATGGACTT+CGG | 0.523094 | 3_1:+41289387 | None:intergenic |
| ATGGATTCTCCCGCAGGAGG+AGG | 0.526333 | 3_1:-41286914 | Msa0357730:three_prime_UTR |
| AAGGTGAAGAGGAAGAGGAA+GGG | 0.530803 | 3_1:-41288886 | Msa0357730:CDS |
| CCTTAACACCTAATCTTGAC+TGG | 0.533110 | 3_1:+41286877 | None:intergenic |
| GCGTTAATCTTCAGTTTCAA+GGG | 0.537328 | 3_1:-41289260 | Msa0357730:intron |
| GGTGGATCTGCTCCGAGCAA+TGG | 0.539383 | 3_1:+41289306 | None:intergenic |
| TAATCTTGACTGGCTGAAGA+AGG | 0.548995 | 3_1:+41286887 | None:intergenic |
| GTCTTGAGGAAGATACTCAA+GGG | 0.554037 | 3_1:-41287993 | Msa0357730:CDS |
| TCAAACATGGATTCTCCCGC+AGG | 0.555440 | 3_1:-41286920 | Msa0357730:three_prime_UTR |
| CCACCGTGTCGGAGGCCGTA+CGG | 0.555632 | 3_1:-41289288 | Msa0357730:five_prime_UTR |
| GAAGGTGAAGAGGAAGAGGA+AGG | 0.556577 | 3_1:-41288887 | Msa0357730:CDS |
| GCGAAACCCTTTCACAGAGA+AGG | 0.557527 | 3_1:-41289336 | Msa0357730:five_prime_UTR |
| TGTCTTGAGGAAGATACTCA+AGG | 0.562517 | 3_1:-41287994 | Msa0357730:CDS |
| CCTCCTCTCTGAAGGTGAAG+AGG | 0.564442 | 3_1:-41288897 | Msa0357730:CDS |
| GCCCGAATATTGGCACATTG+TGG | 0.568169 | 3_1:-41288970 | Msa0357730:CDS |
| CGACCGTACGGCCTCCGACA+CGG | 0.569728 | 3_1:+41289285 | None:intergenic |
| GAAGAGGAAGAGGAAGGGAA+TGG | 0.582705 | 3_1:-41288881 | Msa0357730:CDS |
| GAGCAGATCCACCGTGTCGG+AGG | 0.590065 | 3_1:-41289296 | Msa0357730:five_prime_UTR |
| AGATTAACGCAGCGACCGTA+CGG | 0.590504 | 3_1:+41289273 | None:intergenic |
| AGAAGGTCTTCCTCCTCCTG+CGG | 0.599858 | 3_1:+41286904 | None:intergenic |
| TTACACACTTCACGAGGTGA+AGG | 0.607853 | 3_1:-41288048 | Msa0357730:CDS |
| ATAGGGAGGCGATACTAAAG+TGG | 0.612204 | 3_1:+41288858 | None:intergenic |
| CCTCTTCACCTTCAGAGAGG+AGG | 0.614706 | 3_1:+41288897 | None:intergenic |
| AGGAGGACGCTATTGTCTTG+AGG | 0.615172 | 3_1:-41288007 | Msa0357730:CDS |
| CACCGCCGCCCAAAACACCA+TGG | 0.620119 | 3_1:-41288789 | Msa0357730:CDS |
| CACCATACCTATCGTAAACG+TGG | 0.631082 | 3_1:-41288830 | Msa0357730:CDS |
| GAGTGGGTCTCACAGTTAGG+TGG | 0.634645 | 3_1:+41287959 | None:intergenic |
| CTTCCTCTTCACCTTCAGAG+AGG | 0.638002 | 3_1:+41288894 | None:intergenic |
| AACATGGATTCTCCCGCAGG+AGG | 0.639259 | 3_1:-41286917 | Msa0357730:three_prime_UTR |
| GAAGAAGCTTATTCATGTCG+CGG | 0.645766 | 3_1:-41288948 | Msa0357730:CDS |
| AGTGAGTGCTGAGTAGTGAG+AGG | 0.650520 | 3_1:-41286578 | Msa0357730:three_prime_UTR |
| TACCACGTTTACGATAGGTA+TGG | 0.651983 | 3_1:+41288828 | None:intergenic |
| TCGGAGCAGATCCACCGTGT+CGG | 0.652706 | 3_1:-41289299 | Msa0357730:five_prime_UTR |
| AGCGATACCACGTTTACGAT+AGG | 0.681782 | 3_1:+41288823 | None:intergenic |
| TCTTGAGGAAGATACTCAAG+GGG | 0.688967 | 3_1:-41287992 | Msa0357730:CDS |
| CATGTCGCGGACAATTGCAG+CGG | 0.697708 | 3_1:-41288935 | Msa0357730:CDS |
| GATGGGTTACACACTTCACG+AGG | 0.713948 | 3_1:-41288054 | Msa0357730:CDS |
| CCGTACGGCCTCCGACACGG+TGG | 0.742152 | 3_1:+41289288 | None:intergenic |
| GGTATGGTGAACGAATAGGG+AGG | 0.789435 | 3_1:+41288844 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAACATAGAAAGAAATTA+GGG | + | chr3_1:41286814-41286833 | None:intergenic | 15.0% |
| !!! | TCTGTTATAATTTTGTTTTT+TGG | - | chr3_1:41287216-41287235 | Msa0357730:intron | 15.0% |
| !!! | ATAATTTTGTTTTTTGGATT+AGG | - | chr3_1:41287222-41287241 | Msa0357730:intron | 15.0% |
| !! | GAAAATAATTAAAACTTTGA+TGG | - | chr3_1:41288054-41288073 | Msa0357730:CDS | 15.0% |
| !! | TAGGGTTTCAATTAAAATTT+GGG | + | chr3_1:41286796-41286815 | None:intergenic | 20.0% |
| !! | TTAGGGTTTCAATTAAAATT+TGG | + | chr3_1:41286797-41286816 | None:intergenic | 20.0% |
| !! | CATAAACATAGAAAGAAATT+AGG | + | chr3_1:41286815-41286834 | None:intergenic | 20.0% |
| !!! | TTCTAAAGATTGTTATGTTT+TGG | + | chr3_1:41286855-41286874 | None:intergenic | 20.0% |
| !!! | TTGATAGTCACTAATATTTA+GGG | - | chr3_1:41288153-41288172 | Msa0357730:intron | 20.0% |
| !!! | ACTTTGTATATTTTGTAGTA+TGG | - | chr3_1:41289116-41289135 | Msa0357730:intron | 20.0% |
| !! | ATTTGATATAACCATAGATT+AGG | - | chr3_1:41289202-41289221 | Msa0357730:intron | 20.0% |
| ! | AGGGTTTCAATTAAAATTTG+GGG | + | chr3_1:41286795-41286814 | None:intergenic | 25.0% |
| !! | ATGGAGTTTGTTTAATGTTT+AGG | - | chr3_1:41287302-41287321 | Msa0357730:intron | 25.0% |
| ! | GAAAACCAAAAGAAAAATCT+CGG | + | chr3_1:41287666-41287685 | None:intergenic | 25.0% |
| !!! | TTTTCTTGTTTCCTAATCTT+GGG | - | chr3_1:41287681-41287700 | Msa0357730:intron | 25.0% |
| ! | ACAACCAAAAACATCAAAAA+AGG | + | chr3_1:41287761-41287780 | None:intergenic | 25.0% |
| !! | ACATTGTAACAGACTTTTAA+TGG | + | chr3_1:41287799-41287818 | None:intergenic | 25.0% |
| ! | TCTAGAAAATGGAAAAAGAT+GGG | + | chr3_1:41288025-41288044 | None:intergenic | 25.0% |
| !! | TTCTAGAAAATGGAAAAAGA+TGG | + | chr3_1:41288026-41288045 | None:intergenic | 25.0% |
| !! | TCACAATACATTCTAGAAAA+TGG | + | chr3_1:41288036-41288055 | None:intergenic | 25.0% |
| !! | ATAATTAAAACTTTGATGGC+TGG | - | chr3_1:41288058-41288077 | Msa0357730:CDS | 25.0% |
| ! | CTGGTTTAATATTTACATGA+TGG | - | chr3_1:41288077-41288096 | Msa0357730:CDS | 25.0% |
| !! | CTTGATAGTCACTAATATTT+AGG | - | chr3_1:41288152-41288171 | Msa0357730:intron | 25.0% |
| !!! | TGTTGCTTATTGATTTCAAA+TGG | - | chr3_1:41288454-41288473 | Msa0357730:intron | 25.0% |
| ! | ATGGAGGTAAAAAAAATGAA+TGG | - | chr3_1:41288473-41288492 | Msa0357730:intron | 25.0% |
| ! | ATGTTAACTACAACCTTATA+AGG | - | chr3_1:41288513-41288532 | Msa0357730:intron | 25.0% |
| ! | AAATATACTGTTTGAGTATG+TGG | + | chr3_1:41288585-41288604 | None:intergenic | 25.0% |
| !!! | TTTGTCTTTTTCAAAGATCT+AGG | - | chr3_1:41288633-41288652 | Msa0357730:intron | 25.0% |
| ! | AAAGCATAAAGGATTAAAGT+TGG | + | chr3_1:41288704-41288723 | None:intergenic | 25.0% |
| ! | TTAATCCTTTATGCTTTCTT+CGG | - | chr3_1:41288707-41288726 | Msa0357730:intron | 25.0% |
| ! | CAATCAATTAAGAGAACAAA+TGG | + | chr3_1:41288777-41288796 | None:intergenic | 25.0% |
| ! | CATTTGTTCTCTTAATTGAT+TGG | - | chr3_1:41288775-41288794 | Msa0357730:intron | 25.0% |
| ! | GAAAATATGCAAGTAGTAAA+AGG | + | chr3_1:41288915-41288934 | None:intergenic | 25.0% |
| ! | TAATCGCAATTCATTAAACA+AGG | + | chr3_1:41288940-41288959 | None:intergenic | 25.0% |
| !! | AATTAAATCATGGTGTTTTC+TGG | - | chr3_1:41288998-41289017 | Msa0357730:CDS | 25.0% |
| !!! | TGTTTTCTGGATTTATTTTC+AGG | - | chr3_1:41289011-41289030 | Msa0357730:CDS | 25.0% |
| !!! | AGTATGGTATCTTTTAAAGT+AGG | - | chr3_1:41289132-41289151 | Msa0357730:intron | 25.0% |
| !!! | GTATGGTATCTTTTAAAGTA+GGG | - | chr3_1:41289133-41289152 | Msa0357730:intron | 25.0% |
| !!! | TATGGTATCTTTTAAAGTAG+GGG | - | chr3_1:41289134-41289153 | Msa0357730:intron | 25.0% |
| !!! | AGTTTGGTATCTTTTAAAGT+AGG | - | chr3_1:41289264-41289283 | Msa0357730:five_prime_UTR | 25.0% |
| !!! | GTTTGGTATCTTTTAAAGTA+GGG | - | chr3_1:41289265-41289284 | Msa0357730:five_prime_UTR | 25.0% |
| ! | ATGCATGCTTCAAAATATTA+AGG | + | chr3_1:41289352-41289371 | None:intergenic | 25.0% |
| ! | AGAACCAAATAAATGGACTT+CGG | + | chr3_1:41286572-41286591 | None:intergenic | 30.0% |
| ! | AAATTTGGGATTTGAGAGAA+AGG | + | chr3_1:41286736-41286755 | None:intergenic | 30.0% |
| GAGGGTTTCAATAGAAATTT+GGG | + | chr3_1:41286750-41286769 | None:intergenic | 30.0% | |
| TGAGGGTTTCAATAGAAATT+TGG | + | chr3_1:41286751-41286770 | None:intergenic | 30.0% | |
| TGATTTCTCACTCAAAATGA+GGG | + | chr3_1:41286768-41286787 | None:intergenic | 30.0% | |
| ATGATTTCTCACTCAAAATG+AGG | + | chr3_1:41286769-41286788 | None:intergenic | 30.0% | |
| TTATAACTGCTTCATGGTTA+GGG | + | chr3_1:41286878-41286897 | None:intergenic | 30.0% | |
| TCCATACATAACCAGTTAAA+AGG | + | chr3_1:41287287-41287306 | None:intergenic | 30.0% | |
| TAATGTTTAGGTATGAAGCT+TGG | - | chr3_1:41287314-41287333 | Msa0357730:intron | 30.0% | |
| AGAAAACAGAAAATCATCAC+GGG | + | chr3_1:41287425-41287444 | None:intergenic | 30.0% | |
| CAGAAAACAGAAAATCATCA+CGG | + | chr3_1:41287426-41287445 | None:intergenic | 30.0% | |
| ! | TTTCTTCTTGTTAGTGCTTT+TGG | - | chr3_1:41287582-41287601 | Msa0357730:intron | 30.0% |
| !! | GTTTTCTTGTTTCCTAATCT+TGG | - | chr3_1:41287680-41287699 | Msa0357730:intron | 30.0% |
| ! | TTTCTTGTTTCCTAATCTTG+GGG | - | chr3_1:41287682-41287701 | Msa0357730:intron | 30.0% |
| !!! | CAGACCTTTTTTGATGTTTT+TGG | - | chr3_1:41287754-41287773 | Msa0357730:intron | 30.0% |
| ACAATGTGTAATTTGACTGA+AGG | - | chr3_1:41287812-41287831 | Msa0357730:intron | 30.0% | |
| !! | TCTTGGTTTGTTTGAAAAGA+TGG | - | chr3_1:41287884-41287903 | Msa0357730:intron | 30.0% |
| !! | CTTGGTTTGTTTGAAAAGAT+GGG | - | chr3_1:41287885-41287904 | Msa0357730:intron | 30.0% |
| TAGAAAATGGAAAAAGATGG+GGG | + | chr3_1:41288023-41288042 | None:intergenic | 30.0% | |
| CTAGAAAATGGAAAAAGATG+GGG | + | chr3_1:41288024-41288043 | None:intergenic | 30.0% | |
| ! | ATTTGATCGCTATCTTTTTG+TGG | - | chr3_1:41288190-41288209 | Msa0357730:intron | 30.0% |
| TTATCCAAGGATGAAAAAGT+CGG | + | chr3_1:41288238-41288257 | None:intergenic | 30.0% | |
| ! | TGTAAAGAGCATATTATCCA+AGG | + | chr3_1:41288251-41288270 | None:intergenic | 30.0% |
| TGGATAATATGCTCTTTACA+TGG | - | chr3_1:41288251-41288270 | Msa0357730:intron | 30.0% | |
| !! | TTTCTTGAGTGTAGTTCTAA+TGG | - | chr3_1:41288364-41288383 | Msa0357730:intron | 30.0% |
| !! | TTCTTGAGTGTAGTTCTAAT+GGG | - | chr3_1:41288365-41288384 | Msa0357730:intron | 30.0% |
| !! | TGCTTATTGATTTCAAATGG+AGG | - | chr3_1:41288457-41288476 | Msa0357730:intron | 30.0% |
| TAACATCATGTAAAGCAACA+CGG | + | chr3_1:41288499-41288518 | None:intergenic | 30.0% | |
| TCTAAAAAGTCGTCCTTATA+AGG | + | chr3_1:41288529-41288548 | None:intergenic | 30.0% | |
| ATGTTGTTCATTGCTTATTG+AGG | - | chr3_1:41288809-41288828 | Msa0357730:CDS | 30.0% | |
| CTTATTGAGGATTCAGATTA+GGG | - | chr3_1:41288822-41288841 | Msa0357730:CDS | 30.0% | |
| TGCTGAAGTCAATTAAATCA+TGG | - | chr3_1:41288988-41289007 | Msa0357730:CDS | 30.0% | |
| !!! | TTATTTTCAGGTCTCAAACA+TGG | - | chr3_1:41289023-41289042 | Msa0357730:CDS | 30.0% |
| TAACCATAGATTAGGTGTTA+AGG | - | chr3_1:41289210-41289229 | Msa0357730:intron | 30.0% | |
| AATCCTTAACACCTAATCTA+TGG | + | chr3_1:41289216-41289235 | None:intergenic | 30.0% | |
| ! | AGTACTTCAGTATCTTTTGA+AGG | - | chr3_1:41289296-41289315 | Msa0357730:five_prime_UTR | 30.0% |
| AGGATGTCTTATGAACAATT+TGG | - | chr3_1:41289316-41289335 | Msa0357730:five_prime_UTR | 30.0% | |
| GACAGAGAGAACCAAATAAA+TGG | + | chr3_1:41286579-41286598 | None:intergenic | 35.0% | |
| ACAAAACCTTCTCTGTGAAA+GGG | + | chr3_1:41286629-41286648 | None:intergenic | 35.0% | |
| TGCGTTAATCTTCAGTTTCA+AGG | - | chr3_1:41286695-41286714 | Msa0357730:three_prime_UTR | 35.0% | |
| GCGTTAATCTTCAGTTTCAA+GGG | - | chr3_1:41286696-41286715 | Msa0357730:three_prime_UTR | 35.0% | |
| CTTATAACTGCTTCATGGTT+AGG | + | chr3_1:41286879-41286898 | None:intergenic | 35.0% | |
| CTAACCATGAAGCAGTTATA+AGG | - | chr3_1:41286877-41286896 | Msa0357730:intron | 35.0% | |
| TGTTCCTTATAACTGCTTCA+TGG | + | chr3_1:41286884-41286903 | None:intergenic | 35.0% | |
| AGGAACAATGTCTTCAAAGA+AGG | - | chr3_1:41286897-41286916 | Msa0357730:three_prime_UTR | 35.0% | |
| TGCATAAGAGTTGCAACATT+TGG | - | chr3_1:41286922-41286941 | Msa0357730:three_prime_UTR | 35.0% | |
| TTCCACAATGTGCCAATATT+CGG | + | chr3_1:41286991-41287010 | None:intergenic | 35.0% | |
| ATAGGTATGGTGAACGAATA+GGG | + | chr3_1:41287118-41287137 | None:intergenic | 35.0% | |
| ! | AACCTTTTCCATGGTGTTTT+GGG | + | chr3_1:41287178-41287197 | None:intergenic | 35.0% |
| ! | TAACCTTTTCCATGGTGTTT+TGG | + | chr3_1:41287179-41287198 | None:intergenic | 35.0% |
| AAAACACCATGGAAAAGGTT+AGG | - | chr3_1:41287178-41287197 | Msa0357730:intron | 35.0% | |
| ! | AACAAACCTAACCTTTTCCA+TGG | + | chr3_1:41287187-41287206 | None:intergenic | 35.0% |
| !! | GCCTTTTAACTGGTTATGTA+TGG | - | chr3_1:41287283-41287302 | Msa0357730:intron | 35.0% |
| ! | TTGGTTGAGTTGTTTCGTTA+GGG | - | chr3_1:41287333-41287352 | Msa0357730:intron | 35.0% |
| ! | TTTTCAGATAGATCACACAG+TGG | + | chr3_1:41287402-41287421 | None:intergenic | 35.0% |
| ! | CGTGATGATTTTCTGTTTTC+TGG | - | chr3_1:41287424-41287443 | Msa0357730:intron | 35.0% |
| AATCTGAGTTTCACTATGCT+AGG | - | chr3_1:41287450-41287469 | Msa0357730:intron | 35.0% | |
| GCTAGGATTATCTTCTATTC+CGG | - | chr3_1:41287467-41287486 | Msa0357730:intron | 35.0% | |
| CTAGGATTATCTTCTATTCC+GGG | - | chr3_1:41287468-41287487 | Msa0357730:intron | 35.0% | |
| !! | TTCTGTAGTTAGTCTTGTCT+AGG | - | chr3_1:41287625-41287644 | Msa0357730:intron | 35.0% |
| !! | TCTGTAGTTAGTCTTGTCTA+GGG | - | chr3_1:41287626-41287645 | Msa0357730:intron | 35.0% |
| AACCAAAAGAAAAATCTCGG+AGG | + | chr3_1:41287663-41287682 | None:intergenic | 35.0% | |
| ATGTGTAATTTGACTGAAGG+TGG | - | chr3_1:41287815-41287834 | Msa0357730:intron | 35.0% | |
| TGTGTAATTTGACTGAAGGT+GGG | - | chr3_1:41287816-41287835 | Msa0357730:intron | 35.0% | |
| CTCCTCATCATCAAAATACT+TGG | + | chr3_1:41287934-41287953 | None:intergenic | 35.0% | |
| !!! | CAAGTATTTTGATGATGAGG+AGG | - | chr3_1:41287932-41287951 | Msa0357730:intron | 35.0% |
| AGAAAATGGAAAAAGATGGG+GGG | + | chr3_1:41288022-41288041 | None:intergenic | 35.0% | |
| AGTCGGTTAAATACTTGCAT+TGG | + | chr3_1:41288221-41288240 | None:intergenic | 35.0% | |
| !!! | TTAACCGACTTTTTCATCCT+TGG | - | chr3_1:41288231-41288250 | Msa0357730:intron | 35.0% |
| TATGTGCAATTTAGCTGTGT+AGG | - | chr3_1:41288291-41288310 | Msa0357730:intron | 35.0% | |
| ATGTGCAATTTAGCTGTGTA+GGG | - | chr3_1:41288292-41288311 | Msa0357730:intron | 35.0% | |
| ! | AGTGCTTTTCTATTTCAGTG+TGG | - | chr3_1:41288418-41288437 | Msa0357730:intron | 35.0% |
| ! | AAGGACGACTTTTTAGATAG+TGG | - | chr3_1:41288532-41288551 | Msa0357730:intron | 35.0% |
| ! | ACAAACCGAAGAAAGCATAA+AGG | + | chr3_1:41288715-41288734 | None:intergenic | 35.0% |
| GCTTATTGAGGATTCAGATT+AGG | - | chr3_1:41288821-41288840 | Msa0357730:CDS | 35.0% | |
| TTGGACTTAGACTAACACTT+GGG | - | chr3_1:41288855-41288874 | Msa0357730:CDS | 35.0% | |
| AGTCTTGAGGATCATAGATA+TGG | - | chr3_1:41288885-41288904 | Msa0357730:CDS | 35.0% | |
| GATTTAACATGTAGTACTGC+AGG | - | chr3_1:41289232-41289251 | Msa0357730:intron | 35.0% | |
| !! | CTGCAGGATTTTTCAAAGTT+TGG | - | chr3_1:41289248-41289267 | Msa0357730:intron | 35.0% |
| !!! | TGGTATCTTTTAAAGTAGGG+TGG | - | chr3_1:41289136-41289155 | Msa0357730:intron | 35.0% |
| GACAAAACCTTCTCTGTGAA+AGG | + | chr3_1:41286630-41286649 | None:intergenic | 40.0% | |
| GGATTTGAGAGAAAGGAAGA+AGG | + | chr3_1:41286729-41286748 | None:intergenic | 40.0% | |
| TGCAACATTTGGAGACGTAT+TGG | - | chr3_1:41286933-41286952 | Msa0357730:intron | 40.0% | |
| CATTTGGAGACGTATTGGAT+TGG | - | chr3_1:41286938-41286957 | Msa0357730:intron | 40.0% | |
| TCCACAATGTGCCAATATTC+GGG | + | chr3_1:41286990-41287009 | None:intergenic | 40.0% | |
| GAAGAAGCTTATTCATGTCG+CGG | - | chr3_1:41287008-41287027 | Msa0357730:intron | 40.0% | |
| GATAGGTATGGTGAACGAAT+AGG | + | chr3_1:41287119-41287138 | None:intergenic | 40.0% | |
| TACCACGTTTACGATAGGTA+TGG | + | chr3_1:41287131-41287150 | None:intergenic | 40.0% | |
| ! | TGGATTAGGTTTGTCACTTG+TGG | - | chr3_1:41287236-41287255 | Msa0357730:intron | 40.0% |
| ! | GGATTAGGTTTGTCACTTGT+GGG | - | chr3_1:41287237-41287256 | Msa0357730:intron | 40.0% |
| ! | TGTGGTATAGGCCTTTTAAC+TGG | - | chr3_1:41287273-41287292 | Msa0357730:intron | 40.0% |
| ! | CTTGGTTGAGTTGTTTCGTT+AGG | - | chr3_1:41287332-41287351 | Msa0357730:intron | 40.0% |
| ! | TGGTTGAGTTGTTTCGTTAG+GGG | - | chr3_1:41287334-41287353 | Msa0357730:intron | 40.0% |
| TTATCTTCTATTCCGGGAAG+TGG | - | chr3_1:41287474-41287493 | Msa0357730:intron | 40.0% | |
| AAAGGGAGTGGCAATGATTA+GGG | + | chr3_1:41287514-41287533 | None:intergenic | 40.0% | |
| TAAAGGGAGTGGCAATGATT+AGG | + | chr3_1:41287515-41287534 | None:intergenic | 40.0% | |
| ! | TTTTGCCTCCCACTCATAAA+GGG | + | chr3_1:41287531-41287550 | None:intergenic | 40.0% |
| AGGCAAAACCAATTCTCTGT+GGG | - | chr3_1:41287543-41287562 | Msa0357730:intron | 40.0% | |
| AAACACTTCCCACAGAGAAT+TGG | + | chr3_1:41287554-41287573 | None:intergenic | 40.0% | |
| !!! | TTCTCTGTGGGAAGTGTTTT+TGG | - | chr3_1:41287555-41287574 | Msa0357730:intron | 40.0% |
| ! | CTTCTTGTTAGTGCTTTTGG+TGG | - | chr3_1:41287585-41287604 | Msa0357730:intron | 40.0% |
| !! | TTGTTAGTGCTTTTGGTGGT+AGG | - | chr3_1:41287589-41287608 | Msa0357730:intron | 40.0% |
| ! | GTCCTCCGAGATTTTTCTTT+TGG | - | chr3_1:41287658-41287677 | Msa0357730:intron | 40.0% |
| !!! | GGCCAAGTATTTTGATGATG+AGG | - | chr3_1:41287929-41287948 | Msa0357730:intron | 40.0% |
| TGTCTTGAGGAAGATACTCA+AGG | - | chr3_1:41287962-41287981 | Msa0357730:intron | 40.0% | |
| GTCTTGAGGAAGATACTCAA+GGG | - | chr3_1:41287963-41287982 | Msa0357730:intron | 40.0% | |
| TCTTGAGGAAGATACTCAAG+GGG | - | chr3_1:41287964-41287983 | Msa0357730:intron | 40.0% | |
| TCTGTATATTGTGCTCTGTC+TGG | - | chr3_1:41288677-41288696 | Msa0357730:intron | 40.0% | |
| ATTGAGGATTCAGATTAGGG+TGG | - | chr3_1:41288825-41288844 | Msa0357730:CDS | 40.0% | |
| TTGAGGATTCAGATTAGGGT+GGG | - | chr3_1:41288826-41288845 | Msa0357730:CDS | 40.0% | |
| GTTGGACTTAGACTAACACT+TGG | - | chr3_1:41288854-41288873 | Msa0357730:CDS | 40.0% | |
| CTTGGGACTAAAAAGTCTTG+AGG | - | chr3_1:41288872-41288891 | Msa0357730:CDS | 40.0% | |
| ! | TAATCTTGACTGGCTGAAGA+AGG | + | chr3_1:41289072-41289091 | None:intergenic | 40.0% |
| TTCTTCAGCCAGTCAAGATT+AGG | - | chr3_1:41289071-41289090 | Msa0357730:intron | 40.0% | |
| CCTTAACACCTAATCTTGAC+TGG | + | chr3_1:41289082-41289101 | None:intergenic | 40.0% | |
| CCAGTCAAGATTAGGTGTTA+AGG | - | chr3_1:41289079-41289098 | Msa0357730:intron | 40.0% | |
| !!! | GGTATCTTTTAAAGTAGGGG+TGG | - | chr3_1:41289137-41289156 | Msa0357730:intron | 40.0% |
| CTGAGTAGTGAGAGGAAATA+TGG | - | chr3_1:41289386-41289405 | Msa0357730:five_prime_UTR | 40.0% | |
| TTCTCTGTGAAAGGGTTTCG+CGG | + | chr3_1:41286621-41286640 | None:intergenic | 45.0% | |
| !! | GAAGGTTTTGTCCCATTGCT+CGG | - | chr3_1:41286638-41286657 | Msa0357730:three_prime_UTR | 45.0% |
| AAGGTGAAGAGGAAGAGGAA+GGG | - | chr3_1:41287070-41287089 | Msa0357730:intron | 45.0% | |
| ATAGGGAGGCGATACTAAAG+TGG | + | chr3_1:41287101-41287120 | None:intergenic | 45.0% | |
| CACCATACCTATCGTAAACG+TGG | - | chr3_1:41287126-41287145 | Msa0357730:intron | 45.0% | |
| AGCGATACCACGTTTACGAT+AGG | + | chr3_1:41287136-41287155 | None:intergenic | 45.0% | |
| !! | CTTTTCCATGGTGTTTTGGG+CGG | + | chr3_1:41287175-41287194 | None:intergenic | 45.0% |
| !! | TCACTTGTGGGTTAGCGTAT+AGG | - | chr3_1:41287249-41287268 | Msa0357730:intron | 45.0% |
| !! | CACTTGTGGGTTAGCGTATA+GGG | - | chr3_1:41287250-41287269 | Msa0357730:intron | 45.0% |
| TAGCGTATAGGGTGTGGTAT+AGG | - | chr3_1:41287261-41287280 | Msa0357730:intron | 45.0% | |
| ! | TTGAGTTGTTTCGTTAGGGG+TGG | - | chr3_1:41287337-41287356 | Msa0357730:intron | 45.0% |
| ! | TGAGTTGTTTCGTTAGGGGT+GGG | - | chr3_1:41287338-41287357 | Msa0357730:intron | 45.0% |
| TATTCCGGGAAGTGGTTCTT+CGG | - | chr3_1:41287482-41287501 | Msa0357730:intron | 45.0% | |
| ATTGCCACTCCCTTTATGAG+TGG | - | chr3_1:41287519-41287538 | Msa0357730:intron | 45.0% | |
| TTGCCACTCCCTTTATGAGT+GGG | - | chr3_1:41287520-41287539 | Msa0357730:intron | 45.0% | |
| ! | GTTTTGCCTCCCACTCATAA+AGG | + | chr3_1:41287532-41287551 | None:intergenic | 45.0% |
| GAGGCAAAACCAATTCTCTG+TGG | - | chr3_1:41287542-41287561 | Msa0357730:intron | 45.0% | |
| TGTTTCCTAATCTTGGGGTG+CGG | - | chr3_1:41287687-41287706 | Msa0357730:intron | 45.0% | |
| AAAATCCGCACCCCAAGATT+AGG | + | chr3_1:41287695-41287714 | None:intergenic | 45.0% | |
| TTACACACTTCACGAGGTGA+AGG | - | chr3_1:41287908-41287927 | Msa0357730:intron | 45.0% | |
| TGCAATTTAGCTGTGTAGGG+TGG | - | chr3_1:41288295-41288314 | Msa0357730:intron | 45.0% | |
| GCAATTTAGCTGTGTAGGGT+GGG | - | chr3_1:41288296-41288315 | Msa0357730:intron | 45.0% | |
| TGAGGATTCAGATTAGGGTG+GGG | - | chr3_1:41288827-41288846 | Msa0357730:CDS | 45.0% | |
| !! | AGATTAGGGTGGGGTTTTGT+TGG | - | chr3_1:41288836-41288855 | Msa0357730:CDS | 45.0% |
| GCGAAACCCTTTCACAGAGA+AGG | - | chr3_1:41286620-41286639 | Msa0357730:three_prime_UTR | 50.0% | |
| AGATTAACGCAGCGACCGTA+CGG | + | chr3_1:41286686-41286705 | None:intergenic | 50.0% | |
| CTCGTTACTCGCCCGAATAT+TGG | - | chr3_1:41286976-41286995 | Msa0357730:intron | 50.0% | |
| GCCCGAATATTGGCACATTG+TGG | - | chr3_1:41286986-41287005 | Msa0357730:intron | 50.0% | |
| GTTGCTTACCTCCTCTCTGA+AGG | - | chr3_1:41287051-41287070 | Msa0357730:intron | 50.0% | |
| CTTCCTCTTCACCTTCAGAG+AGG | + | chr3_1:41287065-41287084 | None:intergenic | 50.0% | |
| ! | CTCTGAAGGTGAAGAGGAAG+AGG | - | chr3_1:41287065-41287084 | Msa0357730:intron | 50.0% |
| GAAGGTGAAGAGGAAGAGGA+AGG | - | chr3_1:41287069-41287088 | Msa0357730:intron | 50.0% | |
| GAAGAGGAAGAGGAAGGGAA+TGG | - | chr3_1:41287075-41287094 | Msa0357730:intron | 50.0% | |
| GGTATGGTGAACGAATAGGG+AGG | + | chr3_1:41287115-41287134 | None:intergenic | 50.0% | |
| CGCCCAAAACACCATGGAAA+AGG | - | chr3_1:41287173-41287192 | Msa0357730:intron | 50.0% | |
| TTCACCGAAGAACCACTTCC+CGG | + | chr3_1:41287489-41287508 | None:intergenic | 50.0% | |
| !! | GTCTTGTCTAGGGAGTGTTC+TGG | - | chr3_1:41287636-41287655 | Msa0357730:intron | 50.0% |
| ! | TTGGGGTGCGGATTTTCTCT+AGG | - | chr3_1:41287699-41287718 | Msa0357730:intron | 50.0% |
| AAGAGCAACTCTGCAGCTCT+TGG | - | chr3_1:41287867-41287886 | Msa0357730:intron | 50.0% | |
| !! | GATGGGTTACACACTTCACG+AGG | - | chr3_1:41287902-41287921 | Msa0357730:intron | 50.0% |
| AGGAGGACGCTATTGTCTTG+AGG | - | chr3_1:41287949-41287968 | Msa0357730:intron | 50.0% | |
| TGGAAAAAGATGGGGGGAGT+GGG | + | chr3_1:41288016-41288035 | None:intergenic | 50.0% | |
| ATGGAAAAAGATGGGGGGAG+TGG | + | chr3_1:41288017-41288036 | None:intergenic | 50.0% | |
| TCAAACATGGATTCTCCCGC+AGG | - | chr3_1:41289036-41289055 | Msa0357730:CDS | 50.0% | |
| !! | AGTGAGTGCTGAGTAGTGAG+AGG | - | chr3_1:41289378-41289397 | Msa0357730:five_prime_UTR | 50.0% |
| GTGGATCTGCTCCGAGCAAT+GGG | + | chr3_1:41286652-41286671 | None:intergenic | 55.0% | |
| CATGTCGCGGACAATTGCAG+CGG | - | chr3_1:41287021-41287040 | Msa0357730:intron | 55.0% | |
| CCTCTTCACCTTCAGAGAGG+AGG | + | chr3_1:41287062-41287081 | None:intergenic | 55.0% | |
| ! | CCTCCTCTCTGAAGGTGAAG+AGG | - | chr3_1:41287059-41287078 | Msa0357730:intron | 55.0% |
| !! | TTCCATGGTGTTTTGGGCGG+CGG | + | chr3_1:41287172-41287191 | None:intergenic | 55.0% |
| !! | GTGGGTTAGCGTATAGGGTG+TGG | - | chr3_1:41287255-41287274 | Msa0357730:intron | 55.0% |
| TAGGGGTGGGAAAGCAGAGT+AGG | - | chr3_1:41287351-41287370 | Msa0357730:intron | 55.0% | |
| GTGGGAAAGCAGAGTAGGCT+AGG | - | chr3_1:41287356-41287375 | Msa0357730:intron | 55.0% | |
| CCTCCCACTCATAAAGGGAG+TGG | + | chr3_1:41287526-41287545 | None:intergenic | 55.0% | |
| CCACTCCCTTTATGAGTGGG+AGG | - | chr3_1:41287523-41287542 | Msa0357730:intron | 55.0% | |
| CTGCAGGTCTCAAGGTAGAG+AGG | + | chr3_1:41287726-41287745 | None:intergenic | 55.0% | |
| TACAGCAGCTGCAGGTCTCA+AGG | + | chr3_1:41287734-41287753 | None:intergenic | 55.0% | |
| AAGGTCTGTACAGCAGCTGC+AGG | + | chr3_1:41287742-41287761 | None:intergenic | 55.0% | |
| AAGACGTCTCAGTGCACGTC+CGG | - | chr3_1:41287844-41287863 | Msa0357730:intron | 55.0% | |
| GAGCTGCAGAGTTGCTCTTC+CGG | + | chr3_1:41287866-41287885 | None:intergenic | 55.0% | |
| GAGTGGGTCTCACAGTTAGG+TGG | + | chr3_1:41288000-41288019 | None:intergenic | 55.0% | |
| AACATGGATTCTCCCGCAGG+AGG | - | chr3_1:41289039-41289058 | Msa0357730:CDS | 55.0% | |
| AGAAGGTCTTCCTCCTCCTG+CGG | + | chr3_1:41289055-41289074 | None:intergenic | 55.0% | |
| GGTGGATCTGCTCCGAGCAA+TGG | + | chr3_1:41286653-41286672 | None:intergenic | 60.0% | |
| TCGGAGCAGATCCACCGTGT+CGG | - | chr3_1:41286657-41286676 | Msa0357730:three_prime_UTR | 60.0% | |
| GGGGAGTGGGTCTCACAGTT+AGG | + | chr3_1:41288003-41288022 | None:intergenic | 60.0% | |
| GTGGGCGTGAGGTCAGACTT+TGG | - | chr3_1:41288314-41288333 | Msa0357730:intron | 60.0% | |
| ATGGATTCTCCCGCAGGAGG+AGG | - | chr3_1:41289042-41289061 | Msa0357730:CDS | 60.0% | |
| GAAGGTCTTCCTCCTCCTGC+GGG | + | chr3_1:41289054-41289073 | None:intergenic | 60.0% | |
| GAGCAGATCCACCGTGTCGG+AGG | - | chr3_1:41286660-41286679 | Msa0357730:three_prime_UTR | 65.0% | |
| CACCGCCGCCCAAAACACCA+TGG | - | chr3_1:41287167-41287186 | Msa0357730:intron | 65.0% | |
| AGCTGTGTAGGGTGGGCGTG+AGG | - | chr3_1:41288303-41288322 | Msa0357730:intron | 65.0% | |
| CCACCGTGTCGGAGGCCGTA+CGG | - | chr3_1:41286668-41286687 | Msa0357730:three_prime_UTR | 70.0% | |
| CGACCGTACGGCCTCCGACA+CGG | + | chr3_1:41286674-41286693 | None:intergenic | 70.0% | |
| CCGTACGGCCTCCGACACGG+TGG | + | chr3_1:41286671-41286690 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 41286569 | 41289409 | 41286569 | ID=Msa0357730;Name=Msa0357730 |
| chr3_1 | mRNA | 41286569 | 41289409 | 41286569 | ID=Msa0357730-mRNA-1;Parent=Msa0357730;Name=Msa0357730-mRNA-1;_AED=0.11;_eAED=0.11;_QI=161|1|1|1|0.2|0.16|6|297|153 |
| chr3_1 | exon | 41286569 | 41286736 | 41286569 | ID=Msa0357730-mRNA-1:exon:7198;Parent=Msa0357730-mRNA-1 |
| chr3_1 | exon | 41286797 | 41286863 | 41286797 | ID=Msa0357730-mRNA-1:exon:7197;Parent=Msa0357730-mRNA-1 |
| chr3_1 | exon | 41286886 | 41286945 | 41286886 | ID=Msa0357730-mRNA-1:exon:7196;Parent=Msa0357730-mRNA-1 |
| chr3_1 | exon | 41287972 | 41288144 | 41287972 | ID=Msa0357730-mRNA-1:exon:7195;Parent=Msa0357730-mRNA-1 |
| chr3_1 | exon | 41288784 | 41289086 | 41288784 | ID=Msa0357730-mRNA-1:exon:7194;Parent=Msa0357730-mRNA-1 |
| chr3_1 | exon | 41289261 | 41289409 | 41289261 | ID=Msa0357730-mRNA-1:exon:7193;Parent=Msa0357730-mRNA-1 |
| chr3_1 | five_prime_UTR | 41289261 | 41289409 | 41289261 | ID=Msa0357730-mRNA-1:five_prime_utr;Parent=Msa0357730-mRNA-1 |
| chr3_1 | five_prime_UTR | 41289075 | 41289086 | 41289075 | ID=Msa0357730-mRNA-1:five_prime_utr;Parent=Msa0357730-mRNA-1 |
| chr3_1 | CDS | 41288784 | 41289074 | 41288784 | ID=Msa0357730-mRNA-1:cds;Parent=Msa0357730-mRNA-1 |
| chr3_1 | CDS | 41287974 | 41288144 | 41287974 | ID=Msa0357730-mRNA-1:cds;Parent=Msa0357730-mRNA-1 |
| chr3_1 | three_prime_UTR | 41287972 | 41287973 | 41287972 | ID=Msa0357730-mRNA-1:three_prime_utr;Parent=Msa0357730-mRNA-1 |
| chr3_1 | three_prime_UTR | 41286886 | 41286945 | 41286886 | ID=Msa0357730-mRNA-1:three_prime_utr;Parent=Msa0357730-mRNA-1 |
| chr3_1 | three_prime_UTR | 41286797 | 41286863 | 41286797 | ID=Msa0357730-mRNA-1:three_prime_utr;Parent=Msa0357730-mRNA-1 |
| chr3_1 | three_prime_UTR | 41286569 | 41286736 | 41286569 | ID=Msa0357730-mRNA-1:three_prime_utr;Parent=Msa0357730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
