Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0357650 | KEH33239.1 | 86.928 | 153 | 15 | 2 | 1 | 153 | 8 | 155 | 7.10e-88 | 263 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0357650 | sp|Q9FKI4|NAA10_ARATH | 44.516 | 155 | 75 | 4 | 6 | 150 | 2 | 155 | 8.12e-29 | 107 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0357650 | A0A072UTR7 | 86.928 | 153 | 15 | 2 | 1 | 153 | 8 | 155 | 3.39e-88 | 263 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0357650 | TR | GNAT |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0357650 | Msa0357730 | 0.800872 | 1.175382e-48 | -8.615850e-47 |
| Msa0357650 | Msa0645570 | 0.839531 | 1.499016e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0357650 | MtrunA17_Chr3g0088851 | 85.859 | 99 | 12 | 1 | 1 | 99 | 1 | 97 | 5.50e-57 | 174 |
| Msa0357650 | MtrunA17_Chr3g0090311 | 47.436 | 156 | 71 | 4 | 6 | 151 | 2 | 156 | 5.14e-34 | 117 |
| Msa0357650 | MtrunA17_Chr3g0098461 | 38.854 | 157 | 85 | 6 | 1 | 151 | 1 | 152 | 2.47e-20 | 82.0 |
| Msa0357650 | MtrunA17_Chr7g0275421 | 28.070 | 114 | 78 | 3 | 35 | 146 | 24 | 135 | 8.75e-11 | 57.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0357650 | AT5G13780.1 | 44.516 | 155 | 75 | 4 | 6 | 150 | 2 | 155 | 8.26e-30 | 107 |
| Msa0357650 | AT1G03150.1 | 28.947 | 114 | 77 | 3 | 35 | 146 | 39 | 150 | 7.36e-12 | 60.5 |
Find 71 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACCCGAAGTCCATTTATT+TGG | 0.199476 | 3_1:-41152009 | None:intergenic |
| TTCCACAATGTGCCAATATT+CGG | 0.287513 | 3_1:+41151586 | None:intergenic |
| AGGATGTCTTATGAACAATT+TGG | 0.318747 | 3_1:-41149253 | Msa0357650:three_prime_UTR |
| GACAGAGAGAACCAAATAAA+TGG | 0.319346 | 3_1:+41151998 | None:intergenic |
| CTCGTTACTCGCCCGAATAT+TGG | 0.335099 | 3_1:-41151598 | Msa0357650:CDS |
| ATGCATGCTTCAAAATATTA+AGG | 0.337012 | 3_1:+41149220 | None:intergenic |
| TGCATAAGAGTTGCAACATT+TGG | 0.337938 | 3_1:-41151652 | Msa0357650:CDS |
| CTGAGTAGTGAGAGGAAATA+TGG | 0.344451 | 3_1:-41149183 | Msa0357650:three_prime_UTR |
| GAGCTGCAGAGTTGCTCTTC+CGG | 0.345662 | 3_1:+41150711 | None:intergenic |
| TCCACAATGTGCCAATATTC+GGG | 0.349965 | 3_1:+41151587 | None:intergenic |
| TCTTGGTTTGTTTGAAAAGA+TGG | 0.363394 | 3_1:-41150690 | Msa0357650:CDS |
| TGCGTTAATCTTCAGTTTCA+AGG | 0.375277 | 3_1:-41151879 | Msa0357650:five_prime_UTR |
| TGCAACATTTGGAGACGTAT+TGG | 0.394327 | 3_1:-41151641 | Msa0357650:CDS |
| GAACCAAATAAATGGACTTC+GGG | 0.394753 | 3_1:+41152006 | None:intergenic |
| GATAGGTATGGTGAACGAAT+AGG | 0.421395 | 3_1:+41151458 | None:intergenic |
| TTCTTCAGCCAGTCAAGATT+AGG | 0.429891 | 3_1:-41149498 | Msa0357650:intron |
| CTCCTCATCATCAAAATACT+TGG | 0.430558 | 3_1:+41150643 | None:intergenic |
| ATAGGTATGGTGAACGAATA+GGG | 0.433258 | 3_1:+41151459 | None:intergenic |
| CTCTGAAGGTGAAGAGGAAG+AGG | 0.447607 | 3_1:-41151509 | Msa0357650:CDS |
| CGCCCAAAACACCATGGAAA+AGG | 0.453353 | 3_1:-41151401 | Msa0357650:intron |
| CTTGGTTTGTTTGAAAAGAT+GGG | 0.459057 | 3_1:-41150689 | Msa0357650:CDS |
| AAGAGCAACTCTGCAGCTCT+TGG | 0.462439 | 3_1:-41150707 | Msa0357650:CDS |
| GACAAAACCTTCTCTGTGAA+AGG | 0.487250 | 3_1:+41151947 | None:intergenic |
| GTGGATCTGCTCCGAGCAAA+GGG | 0.491896 | 3_1:+41151925 | None:intergenic |
| AAGACGTCTCAGTGCACGTC+CGG | 0.493597 | 3_1:-41150730 | Msa0357650:CDS |
| CATTTGGAGACGTATTGGAT+TGG | 0.499964 | 3_1:-41151636 | Msa0357650:CDS |
| TTCTCTGTGAAAGGGTTTCG+CGG | 0.506992 | 3_1:+41151956 | None:intergenic |
| ACAAAACCTTCTCTGTGAAA+GGG | 0.507106 | 3_1:+41151948 | None:intergenic |
| GAAGGTCTTCCTCCTCCTGC+GGG | 0.507846 | 3_1:+41149518 | None:intergenic |
| GTTGCTTACCTCCTCTCTGA+AGG | 0.508220 | 3_1:-41151523 | Msa0357650:CDS |
| GATTTAACATGTAGTACTGC+AGG | 0.520464 | 3_1:-41149337 | Msa0357650:intron |
| AGAACCAAATAAATGGACTT+CGG | 0.523094 | 3_1:+41152005 | None:intergenic |
| ATGGATTCTCCCGCAGGAGG+AGG | 0.526333 | 3_1:-41149527 | Msa0357650:three_prime_UTR |
| AAGGTGAAGAGGAAGAGGAA+GGG | 0.530803 | 3_1:-41151504 | Msa0357650:CDS |
| CTAACCATGAAACAGTTGTA+AGG | 0.531736 | 3_1:-41151697 | Msa0357650:intron |
| CCTTAACACCTAATCTTGAC+TGG | 0.533110 | 3_1:+41149490 | None:intergenic |
| GCGTTAATCTTCAGTTTCAA+GGG | 0.537328 | 3_1:-41151878 | Msa0357650:intron |
| AGGAACAATGTCGTCAAAGA+AGG | 0.539052 | 3_1:-41151677 | Msa0357650:exon |
| TAATCTTGACTGGCTGAAGA+AGG | 0.548995 | 3_1:+41149500 | None:intergenic |
| GTCTTGAGGAAGATACTCAA+GGG | 0.554037 | 3_1:-41150611 | Msa0357650:CDS |
| TCAAACATGGATTCTCCCGC+AGG | 0.555440 | 3_1:-41149533 | Msa0357650:three_prime_UTR |
| CCACCGTGTCGGAGGCCGTA+CGG | 0.555632 | 3_1:-41151906 | Msa0357650:five_prime_UTR |
| GAAGGTGAAGAGGAAGAGGA+AGG | 0.556577 | 3_1:-41151505 | Msa0357650:CDS |
| GCGAAACCCTTTCACAGAGA+AGG | 0.557527 | 3_1:-41151954 | Msa0357650:five_prime_UTR |
| TGTCTTGAGGAAGATACTCA+AGG | 0.562517 | 3_1:-41150612 | Msa0357650:CDS |
| CCTCCTCTCTGAAGGTGAAG+AGG | 0.564442 | 3_1:-41151515 | Msa0357650:CDS |
| GCCCGAATATTGGCACATTG+TGG | 0.568169 | 3_1:-41151588 | Msa0357650:CDS |
| CGACCGTACGGCCTCCGACA+CGG | 0.569728 | 3_1:+41151903 | None:intergenic |
| GGTGGATCTGCTCCGAGCAA+AGG | 0.570919 | 3_1:+41151924 | None:intergenic |
| GAGCAGATCCACCGTGTCGG+AGG | 0.590065 | 3_1:-41151914 | Msa0357650:five_prime_UTR |
| AGATTAACGCAGCGACCGTA+CGG | 0.590504 | 3_1:+41151891 | None:intergenic |
| AGAAGGTCTTCCTCCTCCTG+CGG | 0.599858 | 3_1:+41149517 | None:intergenic |
| TTACACACTTCACGAGGTGA+AGG | 0.607853 | 3_1:-41150666 | Msa0357650:CDS |
| CCTCTTCACCTTCAGAGAGG+AGG | 0.614706 | 3_1:+41151515 | None:intergenic |
| AGGAGGACGCTATTGTCTTG+AGG | 0.615172 | 3_1:-41150625 | Msa0357650:CDS |
| CACCGCCGCCCAAAACACCA+TGG | 0.620119 | 3_1:-41151407 | Msa0357650:CDS |
| ATAGGGAGGCGATACTAAAG+TGG | 0.620673 | 3_1:+41151476 | None:intergenic |
| CACCATACCTATCGTAAACG+TGG | 0.631082 | 3_1:-41151448 | Msa0357650:CDS |
| GAGTGGGTCTCACAGTTAGG+TGG | 0.634645 | 3_1:+41150577 | None:intergenic |
| CTTCCTCTTCACCTTCAGAG+AGG | 0.638002 | 3_1:+41151512 | None:intergenic |
| AACATGGATTCTCCCGCAGG+AGG | 0.639259 | 3_1:-41149530 | Msa0357650:three_prime_UTR |
| GAAGAAGCTTATTCATGTCG+CGG | 0.645766 | 3_1:-41151566 | Msa0357650:CDS |
| AGTGAGTGCTGAGTAGTGAG+AGG | 0.650520 | 3_1:-41149191 | Msa0357650:three_prime_UTR |
| TACCACGTTTACGATAGGTA+TGG | 0.651983 | 3_1:+41151446 | None:intergenic |
| TCGGAGCAGATCCACCGTGT+CGG | 0.652706 | 3_1:-41151917 | Msa0357650:five_prime_UTR |
| CATGTCGCGGACAATTGCTG+CGG | 0.679370 | 3_1:-41151553 | Msa0357650:CDS |
| AGCGATACCACGTTTACGAT+AGG | 0.681782 | 3_1:+41151441 | None:intergenic |
| TCTTGAGGAAGATACTCAAG+GGG | 0.688967 | 3_1:-41150610 | Msa0357650:CDS |
| GATGGGTTACACACTTCACG+AGG | 0.713948 | 3_1:-41150672 | Msa0357650:CDS |
| CCGTACGGCCTCCGACACGG+TGG | 0.742152 | 3_1:+41151906 | None:intergenic |
| GGTATGGTGAACGAATAGGG+AGG | 0.789435 | 3_1:+41151462 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAACATAGAAAGAAATTA+GGG | + | chr3_1:41149427-41149446 | None:intergenic | 15.0% |
| !!! | TCTGTTATAATTTTGTTTTT+TGG | - | chr3_1:41149829-41149848 | Msa0357650:intron | 15.0% |
| !!! | ATAATTTTGTTTTTTGGATT+AGG | - | chr3_1:41149835-41149854 | Msa0357650:intron | 15.0% |
| !! | GAAAATAATTAAAACTTTGA+TGG | - | chr3_1:41150667-41150686 | Msa0357650:CDS | 15.0% |
| !! | TAGGGTTTCAATTAAAATTT+GGG | + | chr3_1:41149409-41149428 | None:intergenic | 20.0% |
| !! | TTAGGGTTTCAATTAAAATT+TGG | + | chr3_1:41149410-41149429 | None:intergenic | 20.0% |
| !! | CATAAACATAGAAAGAAATT+AGG | + | chr3_1:41149428-41149447 | None:intergenic | 20.0% |
| !!! | TTCTAAAGATTGTTATGTTT+TGG | + | chr3_1:41149468-41149487 | None:intergenic | 20.0% |
| !!! | TTGATAGTCACTAATATTTA+GGG | - | chr3_1:41150766-41150785 | Msa0357650:intron | 20.0% |
| !!! | ACTTTGTATATTTTGTAGTA+TGG | - | chr3_1:41151734-41151753 | Msa0357650:intron | 20.0% |
| !! | ATTTGATATAACCATAGATT+AGG | - | chr3_1:41151820-41151839 | Msa0357650:intron | 20.0% |
| ! | AGGGTTTCAATTAAAATTTG+GGG | + | chr3_1:41149408-41149427 | None:intergenic | 25.0% |
| !! | ATGGAGTTTGTTTAATGTTT+AGG | - | chr3_1:41149915-41149934 | Msa0357650:intron | 25.0% |
| !! | TTTCTTCTTGTTAGTGATTT+TGG | - | chr3_1:41150195-41150214 | Msa0357650:intron | 25.0% |
| ! | GAAAACCAAAAGAAAAATCT+CGG | + | chr3_1:41150279-41150298 | None:intergenic | 25.0% |
| !!! | TTTTCTTGTTTCCTAATCTT+GGG | - | chr3_1:41150294-41150313 | Msa0357650:intron | 25.0% |
| ! | ACAACCAAAAACATCAAAAA+AGG | + | chr3_1:41150374-41150393 | None:intergenic | 25.0% |
| !! | ACATTGTAACAGACTTTTAA+TGG | + | chr3_1:41150412-41150431 | None:intergenic | 25.0% |
| ! | TCTAGAAAATGGAAAAAGAT+GGG | + | chr3_1:41150638-41150657 | None:intergenic | 25.0% |
| !! | TTCTAGAAAATGGAAAAAGA+TGG | + | chr3_1:41150639-41150658 | None:intergenic | 25.0% |
| !! | TCACAATACATTCTAGAAAA+TGG | + | chr3_1:41150649-41150668 | None:intergenic | 25.0% |
| !! | ATAATTAAAACTTTGATGGC+TGG | - | chr3_1:41150671-41150690 | Msa0357650:CDS | 25.0% |
| ! | CTGGTTTAATATTTACATGA+TGG | - | chr3_1:41150690-41150709 | Msa0357650:CDS | 25.0% |
| !! | CTTGATAGTCACTAATATTT+AGG | - | chr3_1:41150765-41150784 | Msa0357650:intron | 25.0% |
| !!! | TGTTGCTTATTGATTTCAAA+TGG | - | chr3_1:41151067-41151086 | Msa0357650:intron | 25.0% |
| ! | ATGGAGGTAAAAAAAATGAA+TGG | - | chr3_1:41151086-41151105 | Msa0357650:intron | 25.0% |
| ! | TAACATCATGTAAAGTAACA+CGG | + | chr3_1:41151112-41151131 | None:intergenic | 25.0% |
| ! | ATGTTAACTACAACCTTATA+AGG | - | chr3_1:41151126-41151145 | Msa0357650:intron | 25.0% |
| ! | AAATATACTGTTTGAGTATG+TGG | + | chr3_1:41151198-41151217 | None:intergenic | 25.0% |
| !!! | TTTGTCTTTTTCAAAGATCT+AGG | - | chr3_1:41151246-41151265 | Msa0357650:intron | 25.0% |
| ! | AAAGCATAAAGGATTAAAGT+TGG | + | chr3_1:41151317-41151336 | None:intergenic | 25.0% |
| ! | TTAATCCTTTATGCTTTCTT+CGG | - | chr3_1:41151320-41151339 | Msa0357650:intron | 25.0% |
| ! | CAATCAATTAAGAGAACAAA+TGG | + | chr3_1:41151390-41151409 | None:intergenic | 25.0% |
| ! | CATTTGTTCTCTTAATTGAT+TGG | - | chr3_1:41151388-41151407 | Msa0357650:intron | 25.0% |
| ! | GAAAATATGCAAGTAGTAAA+AGG | + | chr3_1:41151528-41151547 | None:intergenic | 25.0% |
| ! | TAATCGCAATTCATTAAACA+AGG | + | chr3_1:41151553-41151572 | None:intergenic | 25.0% |
| !! | AATTAAATCATGGTGTTTTC+TGG | - | chr3_1:41151616-41151635 | Msa0357650:CDS | 25.0% |
| !!! | TGTTTTCTGGATTTATTTTC+AGG | - | chr3_1:41151629-41151648 | Msa0357650:CDS | 25.0% |
| !!! | AGTATGGTATCTTTTAAAGT+AGG | - | chr3_1:41151750-41151769 | Msa0357650:intron | 25.0% |
| !!! | GTATGGTATCTTTTAAAGTA+GGG | - | chr3_1:41151751-41151770 | Msa0357650:intron | 25.0% |
| !!! | TATGGTATCTTTTAAAGTAG+GGG | - | chr3_1:41151752-41151771 | Msa0357650:intron | 25.0% |
| !!! | AGTTTGGTATCTTTTAAAGT+AGG | - | chr3_1:41151882-41151901 | Msa0357650:five_prime_UTR | 25.0% |
| !!! | GTTTGGTATCTTTTAAAGTA+GGG | - | chr3_1:41151883-41151902 | Msa0357650:five_prime_UTR | 25.0% |
| ! | ATGCATGCTTCAAAATATTA+AGG | + | chr3_1:41151970-41151989 | None:intergenic | 25.0% |
| ! | AGAACCAAATAAATGGACTT+CGG | + | chr3_1:41149185-41149204 | None:intergenic | 30.0% |
| ! | AAATTTGGGATTTGAGAGAA+AGG | + | chr3_1:41149349-41149368 | None:intergenic | 30.0% |
| GAGGGTTTCAATAGAAATTT+GGG | + | chr3_1:41149363-41149382 | None:intergenic | 30.0% | |
| TGAGGGTTTCAATAGAAATT+TGG | + | chr3_1:41149364-41149383 | None:intergenic | 30.0% | |
| TGATTTCTCACTCAAAATGA+GGG | + | chr3_1:41149381-41149400 | None:intergenic | 30.0% | |
| ATGATTTCTCACTCAAAATG+AGG | + | chr3_1:41149382-41149401 | None:intergenic | 30.0% | |
| TTACAACTGTTTCATGGTTA+GGG | + | chr3_1:41149491-41149510 | None:intergenic | 30.0% | |
| TCCATACATAACCAGTTAAA+AGG | + | chr3_1:41149900-41149919 | None:intergenic | 30.0% | |
| TAATGTTTAGGTATGAAGCT+TGG | - | chr3_1:41149927-41149946 | Msa0357650:intron | 30.0% | |
| AGAAAACAGAAAATCATCAC+GGG | + | chr3_1:41150038-41150057 | None:intergenic | 30.0% | |
| CAGAAAACAGAAAATCATCA+CGG | + | chr3_1:41150039-41150058 | None:intergenic | 30.0% | |
| !! | GTTTTCTTGTTTCCTAATCT+TGG | - | chr3_1:41150293-41150312 | Msa0357650:intron | 30.0% |
| ! | TTTCTTGTTTCCTAATCTTG+GGG | - | chr3_1:41150295-41150314 | Msa0357650:intron | 30.0% |
| !!! | CAGACCTTTTTTGATGTTTT+TGG | - | chr3_1:41150367-41150386 | Msa0357650:intron | 30.0% |
| ACAATGTGTAATTTGACTGA+AGG | - | chr3_1:41150425-41150444 | Msa0357650:intron | 30.0% | |
| !! | TCTTGGTTTGTTTGAAAAGA+TGG | - | chr3_1:41150497-41150516 | Msa0357650:intron | 30.0% |
| !! | CTTGGTTTGTTTGAAAAGAT+GGG | - | chr3_1:41150498-41150517 | Msa0357650:intron | 30.0% |
| TAGAAAATGGAAAAAGATGG+GGG | + | chr3_1:41150636-41150655 | None:intergenic | 30.0% | |
| CTAGAAAATGGAAAAAGATG+GGG | + | chr3_1:41150637-41150656 | None:intergenic | 30.0% | |
| ! | ATTTGATCGCTATCTTTTTG+TGG | - | chr3_1:41150803-41150822 | Msa0357650:intron | 30.0% |
| TTATCCAAGGATGAAAAAGT+CGG | + | chr3_1:41150851-41150870 | None:intergenic | 30.0% | |
| ! | TGTAAAGAGCATATTATCCA+AGG | + | chr3_1:41150864-41150883 | None:intergenic | 30.0% |
| TGGATAATATGCTCTTTACA+TGG | - | chr3_1:41150864-41150883 | Msa0357650:intron | 30.0% | |
| !! | TTTCTTGAGTGTAGTTCTAA+TGG | - | chr3_1:41150977-41150996 | Msa0357650:intron | 30.0% |
| !! | TTCTTGAGTGTAGTTCTAAT+GGG | - | chr3_1:41150978-41150997 | Msa0357650:intron | 30.0% |
| !! | TGCTTATTGATTTCAAATGG+AGG | - | chr3_1:41151070-41151089 | Msa0357650:intron | 30.0% |
| TCTAAAAAGTCGTCCTTATA+AGG | + | chr3_1:41151142-41151161 | None:intergenic | 30.0% | |
| ATGTTGTTCATTGCTTATTG+AGG | - | chr3_1:41151422-41151441 | Msa0357650:CDS | 30.0% | |
| CTTATTGAGGATTCAGATTA+GGG | - | chr3_1:41151435-41151454 | Msa0357650:CDS | 30.0% | |
| TGCTGAAGTCAATTAAATCA+TGG | - | chr3_1:41151606-41151625 | Msa0357650:CDS | 30.0% | |
| !!! | TTATTTTCAGGTCTCAAACA+TGG | - | chr3_1:41151641-41151660 | Msa0357650:CDS | 30.0% |
| TAACCATAGATTAGGTGTTA+AGG | - | chr3_1:41151828-41151847 | Msa0357650:intron | 30.0% | |
| AATCCTTAACACCTAATCTA+TGG | + | chr3_1:41151834-41151853 | None:intergenic | 30.0% | |
| ! | AGTACTTCAGTATCTTTTGA+AGG | - | chr3_1:41151914-41151933 | Msa0357650:five_prime_UTR | 30.0% |
| AGGATGTCTTATGAACAATT+TGG | - | chr3_1:41151934-41151953 | Msa0357650:five_prime_UTR | 30.0% | |
| GACAGAGAGAACCAAATAAA+TGG | + | chr3_1:41149192-41149211 | None:intergenic | 35.0% | |
| ACAAAACCTTCTCTGTGAAA+GGG | + | chr3_1:41149242-41149261 | None:intergenic | 35.0% | |
| TGCGTTAATCTTCAGTTTCA+AGG | - | chr3_1:41149308-41149327 | Msa0357650:three_prime_UTR | 35.0% | |
| GCGTTAATCTTCAGTTTCAA+GGG | - | chr3_1:41149309-41149328 | Msa0357650:three_prime_UTR | 35.0% | |
| CTTACAACTGTTTCATGGTT+AGG | + | chr3_1:41149492-41149511 | None:intergenic | 35.0% | |
| CTAACCATGAAACAGTTGTA+AGG | - | chr3_1:41149490-41149509 | Msa0357650:intron | 35.0% | |
| TGTTCCTTACAACTGTTTCA+TGG | + | chr3_1:41149497-41149516 | None:intergenic | 35.0% | |
| TGCATAAGAGTTGCAACATT+TGG | - | chr3_1:41149535-41149554 | Msa0357650:three_prime_UTR | 35.0% | |
| TTCCACAATGTGCCAATATT+CGG | + | chr3_1:41149604-41149623 | None:intergenic | 35.0% | |
| ATAGGTATGGTGAACGAATA+GGG | + | chr3_1:41149731-41149750 | None:intergenic | 35.0% | |
| ! | AACCTTTTCCATGGTGTTTT+GGG | + | chr3_1:41149791-41149810 | None:intergenic | 35.0% |
| ! | TAACCTTTTCCATGGTGTTT+TGG | + | chr3_1:41149792-41149811 | None:intergenic | 35.0% |
| AAAACACCATGGAAAAGGTT+AGG | - | chr3_1:41149791-41149810 | Msa0357650:intron | 35.0% | |
| ! | AACAAACCTAACCTTTTCCA+TGG | + | chr3_1:41149800-41149819 | None:intergenic | 35.0% |
| !! | GCCTTTTAACTGGTTATGTA+TGG | - | chr3_1:41149896-41149915 | Msa0357650:intron | 35.0% |
| ! | TTGGTTGAGTTGTTTCGTTA+GGG | - | chr3_1:41149946-41149965 | Msa0357650:intron | 35.0% |
| ! | TTTTCAGATAGATCACACAG+TGG | + | chr3_1:41150015-41150034 | None:intergenic | 35.0% |
| ! | CGTGATGATTTTCTGTTTTC+TGG | - | chr3_1:41150037-41150056 | Msa0357650:intron | 35.0% |
| AATCTGAGTTTCACTATGCT+AGG | - | chr3_1:41150063-41150082 | Msa0357650:intron | 35.0% | |
| GCTAGGATTATCTTCTATTC+CGG | - | chr3_1:41150080-41150099 | Msa0357650:intron | 35.0% | |
| CTAGGATTATCTTCTATTCC+GGG | - | chr3_1:41150081-41150100 | Msa0357650:intron | 35.0% | |
| ! | CTTCTTGTTAGTGATTTTGG+TGG | - | chr3_1:41150198-41150217 | Msa0357650:intron | 35.0% |
| !! | TTGTTAGTGATTTTGGTGGT+AGG | - | chr3_1:41150202-41150221 | Msa0357650:intron | 35.0% |
| !! | TTCTGTAGTTAGTCTTGTCT+AGG | - | chr3_1:41150238-41150257 | Msa0357650:intron | 35.0% |
| !! | TCTGTAGTTAGTCTTGTCTA+GGG | - | chr3_1:41150239-41150258 | Msa0357650:intron | 35.0% |
| AACCAAAAGAAAAATCTCGG+AGG | + | chr3_1:41150276-41150295 | None:intergenic | 35.0% | |
| ATGTGTAATTTGACTGAAGG+TGG | - | chr3_1:41150428-41150447 | Msa0357650:intron | 35.0% | |
| TGTGTAATTTGACTGAAGGT+GGG | - | chr3_1:41150429-41150448 | Msa0357650:intron | 35.0% | |
| CTCCTCATCATCAAAATACT+TGG | + | chr3_1:41150547-41150566 | None:intergenic | 35.0% | |
| !!! | CAAGTATTTTGATGATGAGG+AGG | - | chr3_1:41150545-41150564 | Msa0357650:intron | 35.0% |
| AGAAAATGGAAAAAGATGGG+GGG | + | chr3_1:41150635-41150654 | None:intergenic | 35.0% | |
| AGTCGGTTAAATACTTGCAT+TGG | + | chr3_1:41150834-41150853 | None:intergenic | 35.0% | |
| !!! | TTAACCGACTTTTTCATCCT+TGG | - | chr3_1:41150844-41150863 | Msa0357650:intron | 35.0% |
| TATGTGCAATTTAGCTGTGT+AGG | - | chr3_1:41150904-41150923 | Msa0357650:intron | 35.0% | |
| ATGTGCAATTTAGCTGTGTA+GGG | - | chr3_1:41150905-41150924 | Msa0357650:intron | 35.0% | |
| ! | AGTGCTTTTCTATTTCAGTG+TGG | - | chr3_1:41151031-41151050 | Msa0357650:intron | 35.0% |
| ! | AAGGACGACTTTTTAGATAG+TGG | - | chr3_1:41151145-41151164 | Msa0357650:intron | 35.0% |
| ! | ACAAACCGAAGAAAGCATAA+AGG | + | chr3_1:41151328-41151347 | None:intergenic | 35.0% |
| GCTTATTGAGGATTCAGATT+AGG | - | chr3_1:41151434-41151453 | Msa0357650:CDS | 35.0% | |
| TTGGACTTAGACTAACACTT+GGG | - | chr3_1:41151468-41151487 | Msa0357650:CDS | 35.0% | |
| AGTCTTGAGGATCATAGATA+TGG | - | chr3_1:41151498-41151517 | Msa0357650:CDS | 35.0% | |
| GATTTAACATGTAGTACTGC+AGG | - | chr3_1:41151850-41151869 | Msa0357650:intron | 35.0% | |
| !! | CTGCAGGATTTTTCAAAGTT+TGG | - | chr3_1:41151866-41151885 | Msa0357650:intron | 35.0% |
| !!! | TGGTATCTTTTAAAGTAGGG+TGG | - | chr3_1:41151754-41151773 | Msa0357650:intron | 35.0% |
| GACAAAACCTTCTCTGTGAA+AGG | + | chr3_1:41149243-41149262 | None:intergenic | 40.0% | |
| GGATTTGAGAGAAAGGAAGA+AGG | + | chr3_1:41149342-41149361 | None:intergenic | 40.0% | |
| AGGAACAATGTCGTCAAAGA+AGG | - | chr3_1:41149510-41149529 | Msa0357650:three_prime_UTR | 40.0% | |
| TGCAACATTTGGAGACGTAT+TGG | - | chr3_1:41149546-41149565 | Msa0357650:intron | 40.0% | |
| CATTTGGAGACGTATTGGAT+TGG | - | chr3_1:41149551-41149570 | Msa0357650:intron | 40.0% | |
| TCCACAATGTGCCAATATTC+GGG | + | chr3_1:41149603-41149622 | None:intergenic | 40.0% | |
| GAAGAAGCTTATTCATGTCG+CGG | - | chr3_1:41149621-41149640 | Msa0357650:intron | 40.0% | |
| GATAGGTATGGTGAACGAAT+AGG | + | chr3_1:41149732-41149751 | None:intergenic | 40.0% | |
| TACCACGTTTACGATAGGTA+TGG | + | chr3_1:41149744-41149763 | None:intergenic | 40.0% | |
| ! | TGGATTAGGTTTGTCACTTG+TGG | - | chr3_1:41149849-41149868 | Msa0357650:intron | 40.0% |
| ! | GGATTAGGTTTGTCACTTGT+GGG | - | chr3_1:41149850-41149869 | Msa0357650:intron | 40.0% |
| ! | TGTGGTATAGGCCTTTTAAC+TGG | - | chr3_1:41149886-41149905 | Msa0357650:intron | 40.0% |
| ! | CTTGGTTGAGTTGTTTCGTT+AGG | - | chr3_1:41149945-41149964 | Msa0357650:intron | 40.0% |
| ! | TGGTTGAGTTGTTTCGTTAG+GGG | - | chr3_1:41149947-41149966 | Msa0357650:intron | 40.0% |
| TTATCTTCTATTCCGGGAAG+TGG | - | chr3_1:41150087-41150106 | Msa0357650:intron | 40.0% | |
| AAAGGGAGTGGCAATGATTA+GGG | + | chr3_1:41150127-41150146 | None:intergenic | 40.0% | |
| TAAAGGGAGTGGCAATGATT+AGG | + | chr3_1:41150128-41150147 | None:intergenic | 40.0% | |
| AAACACTTCCCACAGAGAAT+TGG | + | chr3_1:41150167-41150186 | None:intergenic | 40.0% | |
| !!! | TTCTCTGTGGGAAGTGTTTT+TGG | - | chr3_1:41150168-41150187 | Msa0357650:intron | 40.0% |
| ! | GTCCTCCGAGATTTTTCTTT+TGG | - | chr3_1:41150271-41150290 | Msa0357650:intron | 40.0% |
| !!! | GGCCAAGTATTTTGATGATG+AGG | - | chr3_1:41150542-41150561 | Msa0357650:intron | 40.0% |
| TGTCTTGAGGAAGATACTCA+AGG | - | chr3_1:41150575-41150594 | Msa0357650:intron | 40.0% | |
| GTCTTGAGGAAGATACTCAA+GGG | - | chr3_1:41150576-41150595 | Msa0357650:intron | 40.0% | |
| TCTTGAGGAAGATACTCAAG+GGG | - | chr3_1:41150577-41150596 | Msa0357650:intron | 40.0% | |
| TCTGTATATTGTGCTCTGTC+TGG | - | chr3_1:41151290-41151309 | Msa0357650:intron | 40.0% | |
| ATTGAGGATTCAGATTAGGG+TGG | - | chr3_1:41151438-41151457 | Msa0357650:CDS | 40.0% | |
| TTGAGGATTCAGATTAGGGT+GGG | - | chr3_1:41151439-41151458 | Msa0357650:CDS | 40.0% | |
| GTTGGACTTAGACTAACACT+TGG | - | chr3_1:41151467-41151486 | Msa0357650:CDS | 40.0% | |
| CTTGGGACTAAAAAGTCTTG+AGG | - | chr3_1:41151485-41151504 | Msa0357650:CDS | 40.0% | |
| ! | TAATCTTGACTGGCTGAAGA+AGG | + | chr3_1:41151690-41151709 | None:intergenic | 40.0% |
| TTCTTCAGCCAGTCAAGATT+AGG | - | chr3_1:41151689-41151708 | Msa0357650:intron | 40.0% | |
| CCTTAACACCTAATCTTGAC+TGG | + | chr3_1:41151700-41151719 | None:intergenic | 40.0% | |
| CCAGTCAAGATTAGGTGTTA+AGG | - | chr3_1:41151697-41151716 | Msa0357650:intron | 40.0% | |
| !!! | GGTATCTTTTAAAGTAGGGG+TGG | - | chr3_1:41151755-41151774 | Msa0357650:intron | 40.0% |
| CTGAGTAGTGAGAGGAAATA+TGG | - | chr3_1:41152004-41152023 | Msa0357650:five_prime_UTR | 40.0% | |
| TTCTCTGTGAAAGGGTTTCG+CGG | + | chr3_1:41149234-41149253 | None:intergenic | 45.0% | |
| !! | GAAGGTTTTGTCCCTTTGCT+CGG | - | chr3_1:41149251-41149270 | Msa0357650:three_prime_UTR | 45.0% |
| AAGGTGAAGAGGAAGAGGAA+GGG | - | chr3_1:41149683-41149702 | Msa0357650:intron | 45.0% | |
| ATAGGGAGGCGATACTAAAG+TGG | + | chr3_1:41149714-41149733 | None:intergenic | 45.0% | |
| CACCATACCTATCGTAAACG+TGG | - | chr3_1:41149739-41149758 | Msa0357650:intron | 45.0% | |
| AGCGATACCACGTTTACGAT+AGG | + | chr3_1:41149749-41149768 | None:intergenic | 45.0% | |
| !! | CTTTTCCATGGTGTTTTGGG+CGG | + | chr3_1:41149788-41149807 | None:intergenic | 45.0% |
| !! | TCACTTGTGGGTTAGCGTAT+AGG | - | chr3_1:41149862-41149881 | Msa0357650:intron | 45.0% |
| !! | CACTTGTGGGTTAGCGTATA+GGG | - | chr3_1:41149863-41149882 | Msa0357650:intron | 45.0% |
| TAGCGTATAGGGTGTGGTAT+AGG | - | chr3_1:41149874-41149893 | Msa0357650:intron | 45.0% | |
| ! | TTGAGTTGTTTCGTTAGGGG+TGG | - | chr3_1:41149950-41149969 | Msa0357650:intron | 45.0% |
| ! | TGAGTTGTTTCGTTAGGGGT+GGG | - | chr3_1:41149951-41149970 | Msa0357650:intron | 45.0% |
| TATTCCGGGAAGTGGTTCTT+CGG | - | chr3_1:41150095-41150114 | Msa0357650:intron | 45.0% | |
| ATTGCCACTCCCTTTATGAG+TGG | - | chr3_1:41150132-41150151 | Msa0357650:intron | 45.0% | |
| TTGCCACTCCCTTTATGAGT+GGG | - | chr3_1:41150133-41150152 | Msa0357650:intron | 45.0% | |
| TTTCGCCTCCCACTCATAAA+GGG | + | chr3_1:41150144-41150163 | None:intergenic | 45.0% | |
| AGGCGAAACCAATTCTCTGT+GGG | - | chr3_1:41150156-41150175 | Msa0357650:intron | 45.0% | |
| TGTTTCCTAATCTTGGGGTG+CGG | - | chr3_1:41150300-41150319 | Msa0357650:intron | 45.0% | |
| AAAATCCGCACCCCAAGATT+AGG | + | chr3_1:41150308-41150327 | None:intergenic | 45.0% | |
| TTACACACTTCACGAGGTGA+AGG | - | chr3_1:41150521-41150540 | Msa0357650:intron | 45.0% | |
| TGCAATTTAGCTGTGTAGGG+TGG | - | chr3_1:41150908-41150927 | Msa0357650:intron | 45.0% | |
| GCAATTTAGCTGTGTAGGGT+GGG | - | chr3_1:41150909-41150928 | Msa0357650:intron | 45.0% | |
| TGAGGATTCAGATTAGGGTG+GGG | - | chr3_1:41151440-41151459 | Msa0357650:CDS | 45.0% | |
| !! | AGATTAGGGTGGGGTTTTGT+TGG | - | chr3_1:41151449-41151468 | Msa0357650:CDS | 45.0% |
| GCGAAACCCTTTCACAGAGA+AGG | - | chr3_1:41149233-41149252 | Msa0357650:three_prime_UTR | 50.0% | |
| AGATTAACGCAGCGACCGTA+CGG | + | chr3_1:41149299-41149318 | None:intergenic | 50.0% | |
| CTCGTTACTCGCCCGAATAT+TGG | - | chr3_1:41149589-41149608 | Msa0357650:intron | 50.0% | |
| GCCCGAATATTGGCACATTG+TGG | - | chr3_1:41149599-41149618 | Msa0357650:intron | 50.0% | |
| GTTGCTTACCTCCTCTCTGA+AGG | - | chr3_1:41149664-41149683 | Msa0357650:intron | 50.0% | |
| CTTCCTCTTCACCTTCAGAG+AGG | + | chr3_1:41149678-41149697 | None:intergenic | 50.0% | |
| ! | CTCTGAAGGTGAAGAGGAAG+AGG | - | chr3_1:41149678-41149697 | Msa0357650:intron | 50.0% |
| GAAGGTGAAGAGGAAGAGGA+AGG | - | chr3_1:41149682-41149701 | Msa0357650:intron | 50.0% | |
| GGTATGGTGAACGAATAGGG+AGG | + | chr3_1:41149728-41149747 | None:intergenic | 50.0% | |
| CGCCCAAAACACCATGGAAA+AGG | - | chr3_1:41149786-41149805 | Msa0357650:intron | 50.0% | |
| TTCACCGAAGAACCACTTCC+CGG | + | chr3_1:41150102-41150121 | None:intergenic | 50.0% | |
| GTTTCGCCTCCCACTCATAA+AGG | + | chr3_1:41150145-41150164 | None:intergenic | 50.0% | |
| GAGGCGAAACCAATTCTCTG+TGG | - | chr3_1:41150155-41150174 | Msa0357650:intron | 50.0% | |
| !! | GTCTTGTCTAGGGAGTGTTC+TGG | - | chr3_1:41150249-41150268 | Msa0357650:intron | 50.0% |
| ! | TTGGGGTGCGGATTTTCTCT+AGG | - | chr3_1:41150312-41150331 | Msa0357650:intron | 50.0% |
| AAGAGCAACTCTGCAGCTCT+TGG | - | chr3_1:41150480-41150499 | Msa0357650:intron | 50.0% | |
| !! | GATGGGTTACACACTTCACG+AGG | - | chr3_1:41150515-41150534 | Msa0357650:intron | 50.0% |
| AGGAGGACGCTATTGTCTTG+AGG | - | chr3_1:41150562-41150581 | Msa0357650:intron | 50.0% | |
| TGGAAAAAGATGGGGGGAGT+GGG | + | chr3_1:41150629-41150648 | None:intergenic | 50.0% | |
| ATGGAAAAAGATGGGGGGAG+TGG | + | chr3_1:41150630-41150649 | None:intergenic | 50.0% | |
| TCAAACATGGATTCTCCCGC+AGG | - | chr3_1:41151654-41151673 | Msa0357650:CDS | 50.0% | |
| !! | AGTGAGTGCTGAGTAGTGAG+AGG | - | chr3_1:41151996-41152015 | Msa0357650:five_prime_UTR | 50.0% |
| GTGGATCTGCTCCGAGCAAA+GGG | + | chr3_1:41149265-41149284 | None:intergenic | 55.0% | |
| CATGTCGCGGACAATTGCTG+CGG | - | chr3_1:41149634-41149653 | Msa0357650:intron | 55.0% | |
| CCTCTTCACCTTCAGAGAGG+AGG | + | chr3_1:41149675-41149694 | None:intergenic | 55.0% | |
| ! | CCTCCTCTCTGAAGGTGAAG+AGG | - | chr3_1:41149672-41149691 | Msa0357650:intron | 55.0% |
| !! | TTCCATGGTGTTTTGGGCGG+CGG | + | chr3_1:41149785-41149804 | None:intergenic | 55.0% |
| !! | GTGGGTTAGCGTATAGGGTG+TGG | - | chr3_1:41149868-41149887 | Msa0357650:intron | 55.0% |
| TAGGGGTGGGAAAGCAGAGT+AGG | - | chr3_1:41149964-41149983 | Msa0357650:intron | 55.0% | |
| GTGGGAAAGCAGAGTAGGCT+AGG | - | chr3_1:41149969-41149988 | Msa0357650:intron | 55.0% | |
| CCTCCCACTCATAAAGGGAG+TGG | + | chr3_1:41150139-41150158 | None:intergenic | 55.0% | |
| CCACTCCCTTTATGAGTGGG+AGG | - | chr3_1:41150136-41150155 | Msa0357650:intron | 55.0% | |
| CTGCAGGTCTCAAGGTAGAG+AGG | + | chr3_1:41150339-41150358 | None:intergenic | 55.0% | |
| TACAGCAGCTGCAGGTCTCA+AGG | + | chr3_1:41150347-41150366 | None:intergenic | 55.0% | |
| AAGGTCTGTACAGCAGCTGC+AGG | + | chr3_1:41150355-41150374 | None:intergenic | 55.0% | |
| AAGACGTCTCAGTGCACGTC+CGG | - | chr3_1:41150457-41150476 | Msa0357650:intron | 55.0% | |
| GAGCTGCAGAGTTGCTCTTC+CGG | + | chr3_1:41150479-41150498 | None:intergenic | 55.0% | |
| GAGTGGGTCTCACAGTTAGG+TGG | + | chr3_1:41150613-41150632 | None:intergenic | 55.0% | |
| AACATGGATTCTCCCGCAGG+AGG | - | chr3_1:41151657-41151676 | Msa0357650:CDS | 55.0% | |
| AGAAGGTCTTCCTCCTCCTG+CGG | + | chr3_1:41151673-41151692 | None:intergenic | 55.0% | |
| GGTGGATCTGCTCCGAGCAA+AGG | + | chr3_1:41149266-41149285 | None:intergenic | 60.0% | |
| TCGGAGCAGATCCACCGTGT+CGG | - | chr3_1:41149270-41149289 | Msa0357650:three_prime_UTR | 60.0% | |
| GGGGAGTGGGTCTCACAGTT+AGG | + | chr3_1:41150616-41150635 | None:intergenic | 60.0% | |
| GTGGGCGTGAGGTCAGACTT+TGG | - | chr3_1:41150927-41150946 | Msa0357650:intron | 60.0% | |
| ATGGATTCTCCCGCAGGAGG+AGG | - | chr3_1:41151660-41151679 | Msa0357650:CDS | 60.0% | |
| GAAGGTCTTCCTCCTCCTGC+GGG | + | chr3_1:41151672-41151691 | None:intergenic | 60.0% | |
| GAGCAGATCCACCGTGTCGG+AGG | - | chr3_1:41149273-41149292 | Msa0357650:three_prime_UTR | 65.0% | |
| CACCGCCGCCCAAAACACCA+TGG | - | chr3_1:41149780-41149799 | Msa0357650:intron | 65.0% | |
| AGCTGTGTAGGGTGGGCGTG+AGG | - | chr3_1:41150916-41150935 | Msa0357650:intron | 65.0% | |
| CCACCGTGTCGGAGGCCGTA+CGG | - | chr3_1:41149281-41149300 | Msa0357650:three_prime_UTR | 70.0% | |
| CGACCGTACGGCCTCCGACA+CGG | + | chr3_1:41149287-41149306 | None:intergenic | 70.0% | |
| CCGTACGGCCTCCGACACGG+TGG | + | chr3_1:41149284-41149303 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 41149182 | 41152027 | 41149182 | ID=Msa0357650;Name=Msa0357650 |
| chr3_1 | mRNA | 41149182 | 41152027 | 41149182 | ID=Msa0357650-mRNA-1;Parent=Msa0357650;Name=Msa0357650-mRNA-1;_AED=0.11;_eAED=0.11;_QI=161|1|1|1|0.2|0.16|6|297|153 |
| chr3_1 | exon | 41149182 | 41149349 | 41149182 | ID=Msa0357650-mRNA-1:exon:7176;Parent=Msa0357650-mRNA-1 |
| chr3_1 | exon | 41149410 | 41149476 | 41149410 | ID=Msa0357650-mRNA-1:exon:7175;Parent=Msa0357650-mRNA-1 |
| chr3_1 | exon | 41149499 | 41149558 | 41149499 | ID=Msa0357650-mRNA-1:exon:7174;Parent=Msa0357650-mRNA-1 |
| chr3_1 | exon | 41150590 | 41150762 | 41150590 | ID=Msa0357650-mRNA-1:exon:7173;Parent=Msa0357650-mRNA-1 |
| chr3_1 | exon | 41151402 | 41151704 | 41151402 | ID=Msa0357650-mRNA-1:exon:7172;Parent=Msa0357650-mRNA-1 |
| chr3_1 | exon | 41151879 | 41152027 | 41151879 | ID=Msa0357650-mRNA-1:exon:7171;Parent=Msa0357650-mRNA-1 |
| chr3_1 | five_prime_UTR | 41151879 | 41152027 | 41151879 | ID=Msa0357650-mRNA-1:five_prime_utr;Parent=Msa0357650-mRNA-1 |
| chr3_1 | five_prime_UTR | 41151693 | 41151704 | 41151693 | ID=Msa0357650-mRNA-1:five_prime_utr;Parent=Msa0357650-mRNA-1 |
| chr3_1 | CDS | 41151402 | 41151692 | 41151402 | ID=Msa0357650-mRNA-1:cds;Parent=Msa0357650-mRNA-1 |
| chr3_1 | CDS | 41150592 | 41150762 | 41150592 | ID=Msa0357650-mRNA-1:cds;Parent=Msa0357650-mRNA-1 |
| chr3_1 | three_prime_UTR | 41150590 | 41150591 | 41150590 | ID=Msa0357650-mRNA-1:three_prime_utr;Parent=Msa0357650-mRNA-1 |
| chr3_1 | three_prime_UTR | 41149499 | 41149558 | 41149499 | ID=Msa0357650-mRNA-1:three_prime_utr;Parent=Msa0357650-mRNA-1 |
| chr3_1 | three_prime_UTR | 41149410 | 41149476 | 41149410 | ID=Msa0357650-mRNA-1:three_prime_utr;Parent=Msa0357650-mRNA-1 |
| chr3_1 | three_prime_UTR | 41149182 | 41149349 | 41149182 | ID=Msa0357650-mRNA-1:three_prime_utr;Parent=Msa0357650-mRNA-1 |
| Gene Sequence |
| Protein sequence |
