AlfalfaGEDB | Msa0357650

M. sativa cultivar zhongmu-4 / Msa0357650

KEGG: K00670|K20791
GO: -
PFAM: PF00583.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0357650	KEH33239.1	86.928	153	15	2	1	153	8	155	7.10e-88	263

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0357650	sp\|Q9FKI4\|NAA10_ARATH	44.516	155	75	4	6	150	2	155	8.12e-29	107

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0357650	A0A072UTR7	86.928	153	15	2	1	153	8	155	3.39e-88	263

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TFs/TRs:

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Gene ID	Type	Classification
Msa0357650	TR	GNAT

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0357650	Msa0357730	0.800872	1.175382e-48	-8.615850e-47
Msa0357650	Msa0645570	0.839531	1.499016e-57	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0357650	MtrunA17_Chr3g0088851	85.859	99	12	1	1	99	1	97	5.50e-57	174
Msa0357650	MtrunA17_Chr3g0090311	47.436	156	71	4	6	151	2	156	5.14e-34	117
Msa0357650	MtrunA17_Chr3g0098461	38.854	157	85	6	1	151	1	152	2.47e-20	82.0
Msa0357650	MtrunA17_Chr7g0275421	28.070	114	78	3	35	146	24	135	8.75e-11	57.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0357650	AT5G13780.1	44.516	155	75	4	6	150	2	155	8.26e-30	107
Msa0357650	AT1G03150.1	28.947	114	77	3	35	146	39	150	7.36e-12	60.5

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Find 71 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCCGAAGTCCATTTATT+TGG	0.199476	3_1:-41152009	None:intergenic
AACATGGATTCTCCCGCAGG+AGG	0.639259	3_1:-41149530	Msa0357650:three_prime_UTR
AAGACGTCTCAGTGCACGTC+CGG	0.493597	3_1:-41150730	Msa0357650:CDS
AAGAGCAACTCTGCAGCTCT+TGG	0.462439	3_1:-41150707	Msa0357650:CDS
AAGGTGAAGAGGAAGAGGAA+GGG	0.530803	3_1:-41151504	Msa0357650:CDS
ACAAAACCTTCTCTGTGAAA+GGG	0.507106	3_1:+41151948	None:intergenic
AGAACCAAATAAATGGACTT+CGG	0.523094	3_1:+41152005	None:intergenic
AGAAGGTCTTCCTCCTCCTG+CGG	0.599858	3_1:+41149517	None:intergenic
AGATTAACGCAGCGACCGTA+CGG	0.590504	3_1:+41151891	None:intergenic
AGCGATACCACGTTTACGAT+AGG	0.681782	3_1:+41151441	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAGGGTTTCAATAGAAATTT+GGG	+	chr3_1:41149363-41149382	None:intergenic	30.0%
TGAGGGTTTCAATAGAAATT+TGG	+	chr3_1:41149364-41149383	None:intergenic	30.0%
TGATTTCTCACTCAAAATGA+GGG	+	chr3_1:41149381-41149400	None:intergenic	30.0%
ATGATTTCTCACTCAAAATG+AGG	+	chr3_1:41149382-41149401	None:intergenic	30.0%
TTACAACTGTTTCATGGTTA+GGG	+	chr3_1:41149491-41149510	None:intergenic	30.0%
TCCATACATAACCAGTTAAA+AGG	+	chr3_1:41149900-41149919	None:intergenic	30.0%
TAATGTTTAGGTATGAAGCT+TGG	-	chr3_1:41149927-41149946	Msa0357650:intron	30.0%
AGAAAACAGAAAATCATCAC+GGG	+	chr3_1:41150038-41150057	None:intergenic	30.0%
CAGAAAACAGAAAATCATCA+CGG	+	chr3_1:41150039-41150058	None:intergenic	30.0%
ACAATGTGTAATTTGACTGA+AGG	-	chr3_1:41150425-41150444	Msa0357650:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	41149182	41152027	41149182	ID=Msa0357650;Name=Msa0357650
chr3_1	mRNA	41149182	41152027	41149182	ID=Msa0357650-mRNA-1;Parent=Msa0357650;Name=Msa0357650-mRNA-1;_AED=0.11;_eAED=0.11;_QI=161\|1\|1\|1\|0.2\|0.16\|6\|297\|153
chr3_1	exon	41149182	41149349	41149182	ID=Msa0357650-mRNA-1:exon:7176;Parent=Msa0357650-mRNA-1
chr3_1	exon	41149410	41149476	41149410	ID=Msa0357650-mRNA-1:exon:7175;Parent=Msa0357650-mRNA-1
chr3_1	exon	41149499	41149558	41149499	ID=Msa0357650-mRNA-1:exon:7174;Parent=Msa0357650-mRNA-1
chr3_1	exon	41150590	41150762	41150590	ID=Msa0357650-mRNA-1:exon:7173;Parent=Msa0357650-mRNA-1
chr3_1	exon	41151402	41151704	41151402	ID=Msa0357650-mRNA-1:exon:7172;Parent=Msa0357650-mRNA-1
chr3_1	exon	41151879	41152027	41151879	ID=Msa0357650-mRNA-1:exon:7171;Parent=Msa0357650-mRNA-1
chr3_1	five_prime_UTR	41151879	41152027	41151879	ID=Msa0357650-mRNA-1:five_prime_utr;Parent=Msa0357650-mRNA-1
chr3_1	five_prime_UTR	41151693	41151704	41151693	ID=Msa0357650-mRNA-1:five_prime_utr;Parent=Msa0357650-mRNA-1
chr3_1	CDS	41151402	41151692	41151402	ID=Msa0357650-mRNA-1:cds;Parent=Msa0357650-mRNA-1
chr3_1	CDS	41150592	41150762	41150592	ID=Msa0357650-mRNA-1:cds;Parent=Msa0357650-mRNA-1
chr3_1	three_prime_UTR	41150590	41150591	41150590	ID=Msa0357650-mRNA-1:three_prime_utr;Parent=Msa0357650-mRNA-1
chr3_1	three_prime_UTR	41149499	41149558	41149499	ID=Msa0357650-mRNA-1:three_prime_utr;Parent=Msa0357650-mRNA-1
chr3_1	three_prime_UTR	41149410	41149476	41149410	ID=Msa0357650-mRNA-1:three_prime_utr;Parent=Msa0357650-mRNA-1
chr3_1	three_prime_UTR	41149182	41149349	41149182	ID=Msa0357650-mRNA-1:three_prime_utr;Parent=Msa0357650-mRNA-1

Gene Sequence

>Msa0357650

ATGTCGTCAAAGAAGGTGTGCATAAGAGTTGCAACATTTGGAGACGTATTGGATTGGAACAGTAACAACAATCTCGTTACTCGCCCGAATATTGGCACATTGTGGAAGAAGCTTATTCATGTCGCGGACAATTGCTGCGGCTGTATTGTTGCTTACCTCCTCTCTGAAGGTGAAGAGGAAGAGGAAGGGAATGACCACTTTAGTATCGCCTCCCTATTCGTTCACCATACCTATCGTAAACGTGGTATCGCTACTGATCTTATCACCGCCGCCCAAAACACCATGGAAAAGGTGGGTGCTAAAGACGTCTCAGTGCACGTCCGGAAGAGCAACTCTGCAGCTCTTGGTTTGTTTGAAAAGATGGGTTACACACTTCACGAGGTGAAGGCCAAGTATTTTGATGATGAGGAGGACGCTATTGTCTTGAGGAAGATACTCAAGGGGAAGCATGTTGCCACCTAA

Protein sequence

>Msa0357650

MSSKKVCIRVATFGDVLDWNSNNNLVTRPNIGTLWKKLIHVADNCCGCIVAYLLSEGEEEEEGNDHFSIASLFVHHTYRKRGIATDLITAAQNTMEKVGAKDVSVHVRKSNSAALGLFEKMGYTLHEVKAKYFDDEEDAIVLRKILKGKHVAT*