Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0358820 | XP_013459622.1 | 97.418 | 581 | 15 | 0 | 1 | 581 | 1 | 581 | 0.0 | 1151 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0358820 | sp|Q9FNN2|WDR26_ARATH | 58.913 | 589 | 228 | 4 | 1 | 577 | 1 | 587 | 0.0 | 728 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0358820 | A0A072UX44 | 97.418 | 581 | 15 | 0 | 1 | 581 | 1 | 581 | 0.0 | 1151 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0358820 | Msa0498280 | 0.835971 | 1.229877e-56 | -8.615850e-47 |
| Msa0358820 | Msa1121420 | 0.814030 | 1.895674e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0358820 | MtrunA17_Chr3g0095501 | 97.418 | 581 | 15 | 0 | 1 | 581 | 1 | 581 | 0.0 | 1151 |
| Msa0358820 | MtrunA17_Chr5g0442391 | 77.123 | 577 | 124 | 4 | 1 | 577 | 1 | 569 | 0.0 | 887 |
| Msa0358820 | MtrunA17_Chr1g0183051 | 46.154 | 507 | 263 | 3 | 52 | 556 | 6 | 504 | 1.52e-160 | 468 |
| Msa0358820 | MtrunA17_Chr3g0095471 | 68.512 | 289 | 82 | 3 | 1 | 288 | 1 | 281 | 8.55e-113 | 338 |
| Msa0358820 | MtrunA17_Chr1g0185501 | 30.132 | 302 | 201 | 7 | 259 | 555 | 16 | 312 | 1.13e-38 | 144 |
| Msa0358820 | MtrunA17_Chr4g0067151 | 26.667 | 315 | 217 | 8 | 253 | 555 | 9 | 321 | 2.94e-30 | 121 |
| Msa0358820 | MtrunA17_Chr8g0383711 | 22.819 | 298 | 224 | 5 | 258 | 555 | 6 | 297 | 7.67e-22 | 96.3 |
| Msa0358820 | MtrunA17_Chr7g0253861 | 23.179 | 302 | 215 | 10 | 263 | 554 | 48 | 342 | 2.77e-20 | 92.4 |
| Msa0358820 | MtrunA17_Chr5g0401661 | 26.879 | 346 | 200 | 13 | 263 | 573 | 328 | 655 | 4.24e-19 | 91.3 |
| Msa0358820 | MtrunA17_Chr3g0136971 | 33.143 | 175 | 110 | 4 | 268 | 439 | 459 | 629 | 9.11e-19 | 90.1 |
| Msa0358820 | MtrunA17_Chr1g0200901 | 26.421 | 299 | 201 | 10 | 266 | 558 | 119 | 404 | 1.51e-17 | 85.1 |
| Msa0358820 | MtrunA17_Chr5g0401671 | 25.970 | 335 | 215 | 11 | 263 | 573 | 240 | 565 | 2.10e-17 | 85.9 |
| Msa0358820 | MtrunA17_Chr4g0053651 | 24.691 | 324 | 218 | 8 | 257 | 558 | 217 | 536 | 1.13e-16 | 83.6 |
| Msa0358820 | MtrunA17_Chr4g0053651 | 31.469 | 143 | 85 | 3 | 264 | 396 | 407 | 546 | 5.31e-12 | 68.6 |
| Msa0358820 | MtrunA17_Chr1g0176241 | 25.868 | 317 | 197 | 12 | 256 | 558 | 150 | 442 | 3.63e-16 | 81.3 |
| Msa0358820 | MtrunA17_Chr5g0405851 | 29.444 | 180 | 119 | 5 | 263 | 439 | 288 | 462 | 3.05e-14 | 75.5 |
| Msa0358820 | MtrunA17_Chr1g0172501 | 30.460 | 174 | 113 | 5 | 269 | 439 | 397 | 565 | 4.58e-14 | 75.1 |
| Msa0358820 | MtrunA17_Chr3g0103361 | 25.000 | 288 | 202 | 9 | 268 | 550 | 17 | 295 | 8.61e-14 | 72.8 |
| Msa0358820 | MtrunA17_Chr3g0093681 | 30.460 | 174 | 113 | 5 | 269 | 439 | 397 | 565 | 9.23e-14 | 74.3 |
| Msa0358820 | MtrunA17_Chr4g0058091 | 24.522 | 314 | 209 | 11 | 255 | 555 | 215 | 513 | 1.32e-13 | 73.6 |
| Msa0358820 | MtrunA17_Chr6g0448921 | 26.115 | 157 | 111 | 3 | 260 | 415 | 91 | 243 | 2.70e-13 | 73.2 |
| Msa0358820 | MtrunA17_Chr7g0266251 | 24.917 | 301 | 170 | 9 | 278 | 557 | 77 | 342 | 3.12e-13 | 71.2 |
| Msa0358820 | MtrunA17_Chr8g0361561 | 25.077 | 323 | 215 | 11 | 252 | 555 | 101 | 415 | 4.43e-13 | 71.2 |
| Msa0358820 | MtrunA17_Chr3g0138311 | 26.761 | 284 | 188 | 12 | 277 | 555 | 628 | 896 | 1.56e-11 | 67.4 |
| Msa0358820 | MtrunA17_Chr3g0116561 | 23.759 | 282 | 163 | 11 | 278 | 555 | 275 | 508 | 2.33e-11 | 66.2 |
| Msa0358820 | MtrunA17_Chr2g0281451 | 21.656 | 157 | 120 | 1 | 260 | 416 | 90 | 243 | 3.88e-11 | 66.2 |
| Msa0358820 | MtrunA17_Chr1g0171711 | 23.860 | 285 | 196 | 12 | 277 | 555 | 516 | 785 | 4.36e-11 | 65.9 |
| Msa0358820 | MtrunA17_Chr8g0392701 | 27.835 | 194 | 130 | 5 | 372 | 557 | 31 | 222 | 7.77e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0358820 | AT5G08560.1 | 58.913 | 589 | 228 | 4 | 1 | 577 | 1 | 587 | 0.0 | 728 |
| Msa0358820 | AT5G08560.2 | 58.913 | 589 | 228 | 4 | 1 | 577 | 1 | 587 | 0.0 | 728 |
| Msa0358820 | AT5G08560.3 | 58.913 | 589 | 228 | 4 | 1 | 577 | 1 | 587 | 0.0 | 728 |
| Msa0358820 | AT5G43920.1 | 48.141 | 511 | 255 | 5 | 53 | 556 | 7 | 514 | 9.29e-162 | 472 |
| Msa0358820 | AT4G02730.1 | 31.023 | 303 | 198 | 9 | 259 | 555 | 32 | 329 | 8.76e-34 | 131 |
| Msa0358820 | AT3G49660.1 | 28.000 | 300 | 209 | 6 | 264 | 558 | 18 | 315 | 2.28e-31 | 124 |
| Msa0358820 | AT3G49660.1 | 34.328 | 134 | 83 | 3 | 261 | 391 | 146 | 277 | 1.63e-13 | 72.4 |
| Msa0358820 | AT2G43770.1 | 24.000 | 300 | 215 | 9 | 263 | 554 | 46 | 340 | 1.66e-23 | 102 |
| Msa0358820 | AT5G64730.1 | 24.585 | 301 | 219 | 6 | 256 | 555 | 4 | 297 | 1.38e-21 | 95.9 |
| Msa0358820 | AT5G25150.1 | 39.496 | 119 | 69 | 1 | 268 | 386 | 458 | 573 | 3.14e-19 | 92.0 |
| Msa0358820 | AT5G25150.1 | 23.182 | 220 | 158 | 5 | 261 | 475 | 409 | 622 | 1.09e-13 | 74.7 |
| Msa0358820 | AT5G25150.2 | 39.496 | 119 | 69 | 1 | 268 | 386 | 458 | 573 | 3.17e-19 | 92.0 |
| Msa0358820 | AT5G25150.2 | 23.182 | 220 | 158 | 5 | 261 | 475 | 409 | 622 | 1.27e-13 | 74.3 |
| Msa0358820 | AT1G71840.1 | 24.342 | 304 | 210 | 7 | 262 | 555 | 62 | 355 | 3.69e-16 | 81.3 |
| Msa0358820 | AT5G67320.1 | 24.561 | 342 | 225 | 12 | 256 | 573 | 251 | 583 | 6.81e-16 | 81.6 |
| Msa0358820 | AT2G41500.1 | 30.645 | 124 | 83 | 1 | 263 | 386 | 332 | 452 | 3.32e-14 | 75.9 |
| Msa0358820 | AT2G41500.1 | 23.232 | 297 | 178 | 6 | 260 | 555 | 288 | 535 | 2.70e-12 | 70.1 |
| Msa0358820 | AT2G41500.1 | 19.512 | 246 | 190 | 5 | 313 | 555 | 253 | 493 | 8.76e-11 | 65.1 |
| Msa0358820 | AT2G41500.2 | 30.645 | 124 | 83 | 1 | 263 | 386 | 332 | 452 | 3.32e-14 | 75.9 |
| Msa0358820 | AT2G41500.2 | 23.232 | 297 | 178 | 6 | 260 | 555 | 288 | 535 | 2.70e-12 | 70.1 |
| Msa0358820 | AT2G41500.2 | 19.512 | 246 | 190 | 5 | 313 | 555 | 253 | 493 | 8.76e-11 | 65.1 |
| Msa0358820 | AT5G60940.1 | 19.792 | 384 | 269 | 11 | 208 | 555 | 45 | 425 | 2.35e-13 | 72.8 |
| Msa0358820 | AT1G10580.1 | 21.725 | 313 | 229 | 10 | 252 | 555 | 267 | 572 | 2.60e-13 | 73.2 |
| Msa0358820 | AT1G73720.1 | 19.656 | 524 | 373 | 16 | 61 | 555 | 5 | 509 | 2.80e-13 | 72.8 |
| Msa0358820 | AT5G60940.2 | 20.795 | 327 | 235 | 10 | 250 | 555 | 10 | 333 | 1.31e-12 | 69.7 |
| Msa0358820 | AT5G52820.1 | 21.379 | 435 | 244 | 15 | 206 | 555 | 50 | 471 | 1.46e-12 | 70.5 |
| Msa0358820 | AT5G08390.1 | 24.359 | 156 | 115 | 1 | 260 | 415 | 91 | 243 | 6.81e-12 | 68.9 |
| Msa0358820 | AT5G54520.1 | 24.444 | 315 | 221 | 8 | 255 | 555 | 145 | 456 | 7.00e-12 | 68.2 |
| Msa0358820 | AT5G23430.1 | 23.718 | 156 | 116 | 1 | 260 | 415 | 91 | 243 | 3.86e-11 | 66.6 |
| Msa0358820 | AT5G23430.3 | 23.718 | 156 | 116 | 1 | 260 | 415 | 91 | 243 | 3.89e-11 | 66.6 |
| Msa0358820 | AT5G23430.2 | 23.718 | 156 | 116 | 1 | 260 | 415 | 91 | 243 | 3.89e-11 | 66.6 |
Find 166 sgRNAs with CRISPR-Local
Find 556 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTGGAAATTTGTTATATA+TGG | 0.123852 | 3_1:+44560023 | Msa0358820:five_prime_UTR |
| CAGTCTCAAAATAACCTTTA+TGG | 0.135341 | 3_1:+44567336 | Msa0358820:three_prime_UTR |
| TTTCTTTCTTTCTTATTCTT+TGG | 0.180058 | 3_1:-44559396 | None:intergenic |
| AAGCATCTCGTTGCAAAATT+AGG | 0.182560 | 3_1:-44560743 | None:intergenic |
| TGTGGAAAGTATATACTTTC+TGG | 0.200681 | 3_1:+44566095 | Msa0358820:CDS |
| ATTTGTTCCTTCACTACTTT+TGG | 0.218711 | 3_1:+44559969 | Msa0358820:five_prime_UTR |
| AACCCTCAAGATTTCTGATT+TGG | 0.228555 | 3_1:+44566187 | Msa0358820:CDS |
| GATGCGTTGCCCGGTCATTC+TGG | 0.234741 | 3_1:+44567031 | Msa0358820:CDS |
| TATGGTTCATTTAAGCGTTT+TGG | 0.266229 | 3_1:+44567354 | Msa0358820:three_prime_UTR |
| ATGACCGGACAGTCCGGATA+TGG | 0.290731 | 3_1:+44567113 | Msa0358820:CDS |
| AAACAGATGAAACAGATTTC+TGG | 0.290772 | 3_1:-44565935 | None:intergenic |
| AATCTGTTTCATCTGTTTCC+TGG | 0.293813 | 3_1:+44565940 | Msa0358820:CDS |
| AGCATCTCGTTGCAAAATTA+GGG | 0.308199 | 3_1:-44560742 | None:intergenic |
| AGAATAAGAAAGAAAGAAAT+TGG | 0.324041 | 3_1:+44559400 | Msa0358820:five_prime_UTR |
| TATTCCAAAGATGTATTTCC+TGG | 0.324628 | 3_1:-44566373 | None:intergenic |
| ATTTCTGATTTGGAAATAAC+AGG | 0.332254 | 3_1:+44566197 | Msa0358820:CDS |
| AACGAAGTTGTTGGTTCAAA+AGG | 0.341842 | 3_1:+44560216 | Msa0358820:CDS |
| CTAACCTGTAATGTTCTAGA+TGG | 0.343914 | 3_1:-44560837 | None:intergenic |
| TGAACCAGGAAATACATCTT+TGG | 0.345081 | 3_1:+44566369 | Msa0358820:CDS |
| ATTGGAAATTTGTTATATAT+GGG | 0.349512 | 3_1:+44560024 | Msa0358820:five_prime_UTR |
| GTACGCACGTTGAATAAAAT+TGG | 0.352238 | 3_1:+44560405 | Msa0358820:CDS |
| TCCGACCAATGTGGTTCTTC+TGG | 0.354530 | 3_1:+44560606 | Msa0358820:CDS |
| TCTTCTGTGGAGTGTGTTGT+AGG | 0.359789 | 3_1:+44560147 | Msa0358820:CDS |
| GTAAGAAGCTCTTGGCCATT+AGG | 0.359812 | 3_1:-44565966 | None:intergenic |
| ATGATCGAACTGCAATCATT+TGG | 0.365648 | 3_1:+44564645 | Msa0358820:CDS |
| GTTTATGAAAAGAATGGTTC+TGG | 0.368635 | 3_1:+44566047 | Msa0358820:CDS |
| GATACCATCTAGAACATTAC+AGG | 0.375880 | 3_1:+44560833 | Msa0358820:CDS |
| GAAGGAGATCTTAAGCTTGT+TGG | 0.378421 | 3_1:+44566398 | Msa0358820:CDS |
| ATGCCCATGACGATGAAGTA+TGG | 0.396463 | 3_1:+44564576 | Msa0358820:CDS |
| TCTGTTTCCTGGAGTCCTAA+TGG | 0.400766 | 3_1:+44565951 | Msa0358820:CDS |
| AAGGAGATCTTAAGCTTGTT+GGG | 0.403127 | 3_1:+44566399 | Msa0358820:CDS |
| TACATATGGCACAGAAGCTC+AGG | 0.404511 | 3_1:+44566998 | Msa0358820:CDS |
| AACGCTTAAATGAACCATAA+AGG | 0.405942 | 3_1:-44567350 | None:intergenic |
| CGAACGAAATTGTTGTCTAA+AGG | 0.407644 | 3_1:+44560099 | Msa0358820:CDS |
| ATGTTTGCTAGGTTTACATA+TGG | 0.410206 | 3_1:+44566984 | Msa0358820:intron |
| GTTATTAGATCTTGCTTTGG+AGG | 0.410907 | 3_1:+44566452 | Msa0358820:CDS |
| GCACAGAAGCTCAGGGGACT+TGG | 0.415521 | 3_1:+44567006 | Msa0358820:CDS |
| TTTGTTATTAGATCTTGCTT+TGG | 0.415973 | 3_1:+44566449 | Msa0358820:CDS |
| AAAAGATAGCAGATTCTTGT+TGG | 0.417178 | 3_1:+44566337 | Msa0358820:CDS |
| TGAGCTTCTCGATGGGGATA+AGG | 0.418359 | 3_1:+44560488 | Msa0358820:CDS |
| TGATCGAACTGCAATCATTT+GGG | 0.424105 | 3_1:+44564646 | Msa0358820:CDS |
| AGCAAGATCTAATAACAAAC+CGG | 0.429270 | 3_1:-44566445 | None:intergenic |
| TCTCGATGGGGATAAGGTTA+TGG | 0.431229 | 3_1:+44560494 | Msa0358820:CDS |
| CGTTGTCCCCTTCAGATGGT+AGG | 0.435530 | 3_1:-44560197 | None:intergenic |
| ATACATCTTTGGAATATAGA+AGG | 0.440068 | 3_1:+44566380 | Msa0358820:CDS |
| ACGGTCATCACTGCAATTGT+AGG | 0.443034 | 3_1:+44567185 | Msa0358820:CDS |
| GAAACCATGCACAGGAGATC+AGG | 0.443605 | 3_1:-44566070 | None:intergenic |
| ACCGATCGCTCATCGGATTC+CGG | 0.447639 | 3_1:+44559435 | Msa0358820:five_prime_UTR |
| CTGCAAGTTTATGAAAAGAA+TGG | 0.450397 | 3_1:+44566041 | Msa0358820:CDS |
| TGACCGGACAGTCCGGATAT+GGG | 0.451392 | 3_1:+44567114 | Msa0358820:CDS |
| GTTTCACAACTCATTGGATA+AGG | 0.458365 | 3_1:+44560770 | Msa0358820:CDS |
| CTCTTGGCCATTAGGACTCC+AGG | 0.461420 | 3_1:-44565958 | None:intergenic |
| ATTCCAGCTCACACAGTTAA+CGG | 0.464206 | 3_1:-44567056 | None:intergenic |
| AGCAGGTACTTGATGGTGAT+TGG | 0.465527 | 3_1:+44560373 | Msa0358820:CDS |
| AGATGTTCCAATCTCTTCTC+AGG | 0.467671 | 3_1:-44560708 | None:intergenic |
| CTTCTATAGGTAGACACAAA+TGG | 0.468900 | 3_1:+44565879 | Msa0358820:intron |
| AGGATCTTCGAGTGACTTGA+TGG | 0.472498 | 3_1:+44560167 | Msa0358820:CDS |
| TTGCTCGTTTCACAACTCAT+TGG | 0.475980 | 3_1:+44560764 | Msa0358820:CDS |
| GGAGGAAGCTGTTAGGCGTT+GGG | 0.478080 | 3_1:+44565998 | Msa0358820:CDS |
| GTGGAGTGGAGGAAGCTGTT+AGG | 0.478153 | 3_1:+44565991 | Msa0358820:CDS |
| TTATTAGATCTTGCTTTGGA+GGG | 0.480774 | 3_1:+44566453 | Msa0358820:CDS |
| GATATGGGGCTTAAAGTGTC+TGG | 0.481401 | 3_1:+44567129 | Msa0358820:CDS |
| CGGTCATCACTGCAATTGTA+GGG | 0.482058 | 3_1:+44567186 | Msa0358820:CDS |
| AAGTATATACTTTCTGGCCT+CGG | 0.485551 | 3_1:+44566101 | Msa0358820:CDS |
| AATGATACCTGAGAAGAGAT+TGG | 0.486595 | 3_1:+44560701 | Msa0358820:CDS |
| TTTCCAAATCAGAAATCTTG+AGG | 0.489920 | 3_1:-44566190 | None:intergenic |
| ACGGGAAAGAAGTTGAGTCT+TGG | 0.492609 | 3_1:+44566153 | Msa0358820:CDS |
| AGCCCCATATCCGGACTGTC+CGG | 0.492790 | 3_1:-44567117 | None:intergenic |
| CTTGCTGAGGCCAACATGTG+GGG | 0.492988 | 3_1:-44567088 | None:intergenic |
| TAGGCGTTGGGATGTCAGTA+CGG | 0.493450 | 3_1:+44566010 | Msa0358820:CDS |
| TCTCAGGTATCATTACAGTC+GGG | 0.493837 | 3_1:-44560692 | None:intergenic |
| GTTGTCCCCTTCAGATGGTA+GGG | 0.494437 | 3_1:-44560196 | None:intergenic |
| GAAAACCTAGAGGAGGAGTC+TGG | 0.494898 | 3_1:+44560312 | Msa0358820:CDS |
| TTTATGCAGCAGGTACTTGA+TGG | 0.495020 | 3_1:+44560366 | Msa0358820:CDS |
| CTGGCCTGATCTCCTGTGCA+TGG | 0.495260 | 3_1:+44566066 | Msa0358820:CDS |
| GAAGGGGACAACGAAGTTGT+TGG | 0.495553 | 3_1:+44560207 | Msa0358820:CDS |
| GACTTGGTAGATGCGTTGCC+CGG | 0.495687 | 3_1:+44567022 | Msa0358820:CDS |
| GACACTTTAAGCCCCATATC+CGG | 0.496823 | 3_1:-44567126 | None:intergenic |
| TTCCAAATCAGAAATCTTGA+GGG | 0.500940 | 3_1:-44566189 | None:intergenic |
| GAGGACTCGGTTGAAACTGC+TGG | 0.502859 | 3_1:+44560647 | Msa0358820:CDS |
| CTCCACATGTAAGAAGCTCT+TGG | 0.503254 | 3_1:-44565974 | None:intergenic |
| TGGCCTCAGCAAGCGATGAC+CGG | 0.503603 | 3_1:+44567098 | Msa0358820:CDS |
| TTCTCAGGTATCATTACAGT+CGG | 0.505834 | 3_1:-44560693 | None:intergenic |
| TCCTGTGCATGGTTTCCTTG+TGG | 0.507321 | 3_1:+44566077 | Msa0358820:CDS |
| TGGAGGAAGCTGTTAGGCGT+TGG | 0.508032 | 3_1:+44565997 | Msa0358820:CDS |
| GCAGGTACTTGATGGTGATT+GGG | 0.509356 | 3_1:+44560374 | Msa0358820:CDS |
| CGCTTGCTGAGGCCAACATG+TGG | 0.509685 | 3_1:-44567090 | None:intergenic |
| ACGAAGTTGTTGGTTCAAAA+GGG | 0.512756 | 3_1:+44560217 | Msa0358820:CDS |
| GCTTGCTGAGGCCAACATGT+GGG | 0.517243 | 3_1:-44567089 | None:intergenic |
| AAGCAATCGTTTATTGCTAG+TGG | 0.517938 | 3_1:+44566479 | Msa0358820:CDS |
| GTGTCTACTTGTAACTTGTA+AGG | 0.518013 | 3_1:-44567283 | None:intergenic |
| CAAGCGATGACCGGACAGTC+CGG | 0.518133 | 3_1:+44567107 | Msa0358820:CDS |
| CTCTACCACCGATCGCTCAT+CGG | 0.530084 | 3_1:+44559428 | Msa0358820:five_prime_UTR |
| TTTGCATGTGGGAATTAGAC+GGG | 0.530130 | 3_1:+44566135 | Msa0358820:CDS |
| GTTGGTTAATCTTCTGAACC+AGG | 0.530280 | 3_1:+44566355 | Msa0358820:CDS |
| ATTTGGAAATAACAGGTGAC+GGG | 0.531109 | 3_1:+44566204 | Msa0358820:CDS |
| GATTTGGAAATAACAGGTGA+CGG | 0.534740 | 3_1:+44566203 | Msa0358820:CDS |
| ACGAAGGCATTGTATTCTCT+CGG | 0.535490 | 3_1:+44560273 | Msa0358820:CDS |
| CTCTAACGGTTCATCTTCTG+TGG | 0.542353 | 3_1:+44560134 | Msa0358820:CDS |
| AAACCATACTTCATCGTCAT+GGG | 0.547234 | 3_1:-44564579 | None:intergenic |
| GCTCGGCCCCTACCATCTGA+AGG | 0.550262 | 3_1:+44560189 | Msa0358820:CDS |
| ATTTGCATGTGGGAATTAGA+CGG | 0.554899 | 3_1:+44566134 | Msa0358820:CDS |
| GCCGGAATCCGATGAGCGAT+CGG | 0.554994 | 3_1:-44559436 | None:intergenic |
| CTCGGCCCCTACCATCTGAA+GGG | 0.555938 | 3_1:+44560190 | Msa0358820:CDS |
| ACCAGAAGAACCACATTGGT+CGG | 0.557604 | 3_1:-44560607 | None:intergenic |
| AACTCAAATGCCTACAGCAA+TGG | 0.559040 | 3_1:+44567160 | Msa0358820:CDS |
| GTTAACGGCTCCAGAATGAC+CGG | 0.560282 | 3_1:-44567041 | None:intergenic |
| TCTATGAAGCATAAATTATG+TGG | 0.562604 | 3_1:+44565909 | Msa0358820:CDS |
| GTATGCCAGACTCCTCCTCT+AGG | 0.567059 | 3_1:-44560317 | None:intergenic |
| GAGCCGTTAACTGTGTGAGC+TGG | 0.567883 | 3_1:+44567053 | Msa0358820:CDS |
| TAGTGGAAGTGAGGATTCAC+AGG | 0.569174 | 3_1:+44566496 | Msa0358820:CDS |
| TTGTAGGGGAACTTAGATGA+AGG | 0.569237 | 3_1:+44567201 | Msa0358820:exon |
| TGGATGCATTAAAGACATTG+AGG | 0.574890 | 3_1:+44560514 | Msa0358820:CDS |
| CTTCGAGTGACTTGATGGCT+CGG | 0.576791 | 3_1:+44560172 | Msa0358820:CDS |
| GGTAAATGTGTTTATGCAGC+AGG | 0.577455 | 3_1:+44560356 | Msa0358820:CDS |
| AGGCGTTGGGATGTCAGTAC+GGG | 0.578210 | 3_1:+44566011 | Msa0358820:CDS |
| TTGTCCCCTTCAGATGGTAG+GGG | 0.578670 | 3_1:-44560195 | None:intergenic |
| GGCCAAGAGCTTCTTACATG+TGG | 0.581552 | 3_1:+44565972 | Msa0358820:CDS |
| TGTCCGGTCATCGCTTGCTG+AGG | 0.582564 | 3_1:-44567101 | None:intergenic |
| ACTTCGTTGTCCCCTTCAGA+TGG | 0.583591 | 3_1:-44560201 | None:intergenic |
| CTCAGGTATCATTACAGTCG+GGG | 0.583773 | 3_1:-44560691 | None:intergenic |
| GTAACTTGTAAGGACAGTAA+AGG | 0.585436 | 3_1:-44567273 | None:intergenic |
| ATAAAAGTCATAGACGCTCC+CGG | 0.592625 | 3_1:+44566426 | Msa0358820:CDS |
| AATTTGTTATATATGGGCTG+AGG | 0.593321 | 3_1:+44560030 | Msa0358820:five_prime_UTR |
| AATGCCTCCAAAAGTAGTGA+AGG | 0.593813 | 3_1:-44559976 | None:intergenic |
| AGTTCGATCATTTGATGCTG+TGG | 0.594560 | 3_1:-44564633 | None:intergenic |
| GTTTATTGCTAGTGGAAGTG+AGG | 0.595056 | 3_1:+44566487 | Msa0358820:CDS |
| GAAGAACCACATTGGTCGGA+TGG | 0.599754 | 3_1:-44560603 | None:intergenic |
| GGTTGAGAGATTTATTGAAG+AGG | 0.603023 | 3_1:+44566286 | Msa0358820:CDS |
| AAAAGCGATCTGAAGTTCGC+CGG | 0.603308 | 3_1:-44559454 | None:intergenic |
| GCTTCTTACATGTGGAGTGG+AGG | 0.605122 | 3_1:+44565980 | Msa0358820:CDS |
| GACCGGACAGTCCGGATATG+GGG | 0.607301 | 3_1:+44567115 | Msa0358820:CDS |
| ATAAGAAAGAAAGAAATTGG+CGG | 0.607653 | 3_1:+44559403 | Msa0358820:five_prime_UTR |
| TCGGCCCCTACCATCTGAAG+GGG | 0.610683 | 3_1:+44560191 | Msa0358820:CDS |
| GTGACAAAAGCATTTGCATG+TGG | 0.612110 | 3_1:+44566123 | Msa0358820:CDS |
| TGACAAAAGCATTTGCATGT+GGG | 0.613809 | 3_1:+44566124 | Msa0358820:CDS |
| CAAACCATACTTCATCGTCA+TGG | 0.614532 | 3_1:-44564580 | None:intergenic |
| TCCACAAGGAAACCATGCAC+AGG | 0.616331 | 3_1:-44566078 | None:intergenic |
| TTTACCACAGACGAATTCAA+CGG | 0.627972 | 3_1:-44560339 | None:intergenic |
| AGAGCTTCTTACATGTGGAG+TGG | 0.628710 | 3_1:+44565977 | Msa0358820:CDS |
| ACATATGGCACAGAAGCTCA+GGG | 0.629533 | 3_1:+44566999 | Msa0358820:CDS |
| TTGCTGAGGCCAACATGTGG+GGG | 0.630797 | 3_1:-44567087 | None:intergenic |
| GCTCTTCAATAAAGAAACGA+AGG | 0.630901 | 3_1:+44566265 | Msa0358820:CDS |
| AAAGAAGTTGAGTCTTGGAA+AGG | 0.635577 | 3_1:+44566158 | Msa0358820:CDS |
| GGATTAAACAGTCTCTCTAA+CGG | 0.639200 | 3_1:+44560120 | Msa0358820:CDS |
| GGTACTTGATGGTGATTGGG+AGG | 0.643190 | 3_1:+44560377 | Msa0358820:CDS |
| ATGACCGTTGCCATTGCTGT+AGG | 0.644794 | 3_1:-44567170 | None:intergenic |
| GCAAGATCTAATAACAAACC+GGG | 0.647814 | 3_1:-44566444 | None:intergenic |
| AATGCCTACAGCAATGGCAA+CGG | 0.648036 | 3_1:+44567166 | Msa0358820:CDS |
| GACTCGGTTGAAACTGCTGG+AGG | 0.665587 | 3_1:+44560650 | Msa0358820:CDS |
| GACCGGGGAAAACCTAGAGG+AGG | 0.668456 | 3_1:+44560305 | Msa0358820:CDS |
| GGAATCCGATGAGCGATCGG+TGG | 0.670652 | 3_1:-44559433 | None:intergenic |
| TTGTCACCATCCGACCAATG+TGG | 0.673046 | 3_1:+44560597 | Msa0358820:CDS |
| CTCGACCAGAAGAACCACAT+TGG | 0.680833 | 3_1:-44560611 | None:intergenic |
| TCGAACTGCAATCATTTGGG+AGG | 0.684790 | 3_1:+44564649 | Msa0358820:CDS |
| TCAGGTATCATTACAGTCGG+GGG | 0.685221 | 3_1:-44560690 | None:intergenic |
| TTAACGGCTCCAGAATGACC+GGG | 0.689998 | 3_1:-44567040 | None:intergenic |
| CTATAGGTAGACACAAATGG+TGG | 0.695509 | 3_1:+44565882 | Msa0358820:intron |
| CATACCGTTGAATTCGTCTG+TGG | 0.696131 | 3_1:+44560335 | Msa0358820:CDS |
| GGTCATCACTGCAATTGTAG+GGG | 0.702846 | 3_1:+44567187 | Msa0358820:CDS |
| GAAAGTATATACTTTCCACA+AGG | 0.711786 | 3_1:-44566092 | None:intergenic |
| AAAGACCGGGGAAAACCTAG+AGG | 0.721392 | 3_1:+44560302 | Msa0358820:CDS |
| GTTTGTAAGGATAATCACGA+AGG | 0.736409 | 3_1:+44560257 | Msa0358820:CDS |
| CATATGGCACAGAAGCTCAG+GGG | 0.737243 | 3_1:+44567000 | Msa0358820:CDS |
| TTTGGAAATAACAGGTGACG+GGG | 0.738612 | 3_1:+44566205 | Msa0358820:CDS |
| TTATATTCAGATCATCACTG+TGG | 0.742830 | 3_1:+44560801 | Msa0358820:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATTTATTATTTAATTA+GGG | - | chr3_1:44562114-44562133 | None:intergenic | 0.0% |
| !!! | TTAGTTAATTTTATAGATTA+AGG | + | chr3_1:44563508-44563527 | Msa0358820:intron | 10.0% |
| !! | ATTTAACGAATAAAAAAAAT+TGG | - | chr3_1:44564007-44564026 | None:intergenic | 10.0% |
| !!! | GATTATTTTTTTATGTAGTT+AGG | + | chr3_1:44559612-44559631 | Msa0358820:intron | 15.0% |
| !!! | TTTTTGAGTTATAAGTTTAA+TGG | + | chr3_1:44559758-44559777 | Msa0358820:intron | 15.0% |
| !!! | TATTGGAAATTTGTTATATA+TGG | + | chr3_1:44560023-44560042 | Msa0358820:five_prime_UTR | 15.0% |
| !!! | ATTGGAAATTTGTTATATAT+GGG | + | chr3_1:44560024-44560043 | Msa0358820:five_prime_UTR | 15.0% |
| !!! | GATTTTGTAAATATTTAATG+CGG | + | chr3_1:44561527-44561546 | Msa0358820:intron | 15.0% |
| !! | TAAAGTTGTAGAATAAATTA+TGG | - | chr3_1:44561800-44561819 | None:intergenic | 15.0% |
| !! | GTAAAAAAATAAAACATACA+TGG | + | chr3_1:44563720-44563739 | Msa0358820:intron | 15.0% |
| !! | TAAATGTTATAATAGATTTG+TGG | + | chr3_1:44563898-44563917 | Msa0358820:intron | 15.0% |
| !!! | AATTTTGATATGATTCTAAA+TGG | + | chr3_1:44564032-44564051 | Msa0358820:intron | 15.0% |
| !!! | ATTTTGATATGATTCTAAAT+GGG | + | chr3_1:44564033-44564052 | Msa0358820:intron | 15.0% |
| !!! | AATTTTTACTTTATTTGGAA+TGG | + | chr3_1:44565487-44565506 | Msa0358820:intron | 15.0% |
| !! | AAAACATAATAACTATCAAA+AGG | - | chr3_1:44565643-44565662 | None:intergenic | 15.0% |
| !!! | ATTTTGAATATTAAACCATA+AGG | + | chr3_1:44566789-44566808 | Msa0358820:intron | 15.0% |
| !!! | CTTTGAAAATTATAAATTCT+TGG | - | chr3_1:44566866-44566885 | None:intergenic | 15.0% |
| !! | ATAGAATTTATAGAAATTGT+AGG | - | chr3_1:44566935-44566954 | None:intergenic | 15.0% |
| !! | TTTCTTTCTTTCTTATTCTT+TGG | - | chr3_1:44559399-44559418 | None:intergenic | 20.0% |
| !! | AGAATAAGAAAGAAAGAAAT+TGG | + | chr3_1:44559400-44559419 | Msa0358820:five_prime_UTR | 20.0% |
| !! | AAAAGGGATCATAAAAAAAA+GGG | + | chr3_1:44560233-44560252 | Msa0358820:CDS | 20.0% |
| !! | TAGATGTACTAAATTTCTAA+AGG | + | chr3_1:44561488-44561507 | Msa0358820:intron | 20.0% |
| !!! | TTTGGTCTTTTATTATTTAC+AGG | - | chr3_1:44561566-44561585 | None:intergenic | 20.0% |
| !! | TGAAACATGTGATTAAATTT+GGG | - | chr3_1:44562020-44562039 | None:intergenic | 20.0% |
| !! | ATATTTATTTATGTACTCTC+TGG | - | chr3_1:44562366-44562385 | None:intergenic | 20.0% |
| !!! | ATATTATCTTGTTTTCTAAC+TGG | + | chr3_1:44562382-44562401 | Msa0358820:intron | 20.0% |
| !!! | ATGTTAATTTTGAGTTCAAT+AGG | + | chr3_1:44562829-44562848 | Msa0358820:intron | 20.0% |
| !! | TATAAATAGAACATAGTGTT+AGG | + | chr3_1:44562873-44562892 | Msa0358820:intron | 20.0% |
| !!! | ATTTTTTAGTTAGAAACTGA+TGG | + | chr3_1:44563026-44563045 | Msa0358820:intron | 20.0% |
| !!! | TTTTTTAGTTAGAAACTGAT+GGG | + | chr3_1:44563027-44563046 | Msa0358820:intron | 20.0% |
| !!! | ATATCTTTTACTCTTTGTTT+TGG | + | chr3_1:44563250-44563269 | Msa0358820:intron | 20.0% |
| !!! | TATCTTTTACTCTTTGTTTT+GGG | + | chr3_1:44563251-44563270 | Msa0358820:intron | 20.0% |
| !! | TAATATAGTATTCTTTACCT+TGG | + | chr3_1:44563543-44563562 | Msa0358820:intron | 20.0% |
| !! | AAGTTTCGAAAAAAATAGAT+GGG | + | chr3_1:44563643-44563662 | Msa0358820:intron | 20.0% |
| !! | TATGAATAACAACTTACAAT+TGG | - | chr3_1:44564737-44564756 | None:intergenic | 20.0% |
| !! | AACATGTATTACATCAATTT+GGG | - | chr3_1:44564763-44564782 | None:intergenic | 20.0% |
| !!! | TTTGTTATTGATAGTTTACA+TGG | - | chr3_1:44565104-44565123 | None:intergenic | 20.0% |
| !! | AAAATGTTAGAATATGTTGT+GGG | + | chr3_1:44565510-44565529 | Msa0358820:intron | 20.0% |
| !!! | GTTTCACATATTTTGTTATT+TGG | + | chr3_1:44565851-44565870 | Msa0358820:intron | 20.0% |
| !! | ATATTTCAAATTAGTCCTTA+TGG | - | chr3_1:44566807-44566826 | None:intergenic | 20.0% |
| !!! | TAATTTGAAATATTTGCACA+CGG | + | chr3_1:44566814-44566833 | Msa0358820:intron | 20.0% |
| ! | ATAAGAAAGAAAGAAATTGG+CGG | + | chr3_1:44559403-44559422 | Msa0358820:five_prime_UTR | 25.0% |
| ! | TTCAATTTCTGAGTATTATG+TGG | + | chr3_1:44559562-44559581 | Msa0358820:intron | 25.0% |
| ! | AAGCATTTCAAAACTTGTAT+GGG | - | chr3_1:44559739-44559758 | None:intergenic | 25.0% |
| !! | AAAGCATTTCAAAACTTGTA+TGG | - | chr3_1:44559740-44559759 | None:intergenic | 25.0% |
| ! | AATCTATTCTTATCCAATGA+TGG | - | chr3_1:44559815-44559834 | None:intergenic | 25.0% |
| ! | ACTCAATTCACAATTCTAAT+TGG | + | chr3_1:44559858-44559877 | Msa0358820:intron | 25.0% |
| ! | CAAAAGGGATCATAAAAAAA+AGG | + | chr3_1:44560232-44560251 | Msa0358820:CDS | 25.0% |
| ! | TAAAAAAAAGGGAGTTTGTA+AGG | + | chr3_1:44560244-44560263 | Msa0358820:CDS | 25.0% |
| ! | CTCCAATATTAAAAATGAAG+CGG | - | chr3_1:44560457-44560476 | None:intergenic | 25.0% |
| ! | CATTATTCAATACATATCAC+TGG | - | chr3_1:44561025-44561044 | None:intergenic | 25.0% |
| ! | CAGTGATATGTATTGAATAA+TGG | + | chr3_1:44561023-44561042 | Msa0358820:intron | 25.0% |
| ! | ATGAATTAAACTGCAATAGA+AGG | - | chr3_1:44561421-44561440 | None:intergenic | 25.0% |
| ! | TACATCTATCAAATGTAACA+AGG | - | chr3_1:44561476-44561495 | None:intergenic | 25.0% |
| ! | CTGAAACATGTGATTAAATT+TGG | - | chr3_1:44562021-44562040 | None:intergenic | 25.0% |
| ! | AACTATATCTCTATCTCAAT+TGG | - | chr3_1:44562069-44562088 | None:intergenic | 25.0% |
| !! | ATAAATTTTACTGAGAAAGC+AGG | + | chr3_1:44562124-44562143 | Msa0358820:intron | 25.0% |
| ! | TAATGTCCTTTAATTAACGA+TGG | - | chr3_1:44562486-44562505 | None:intergenic | 25.0% |
| !! | AACCATTAGAAGTATAGAAA+TGG | + | chr3_1:44562602-44562621 | Msa0358820:intron | 25.0% |
| !!! | TATAGAAATGGACTAGAATT+TGG | + | chr3_1:44562614-44562633 | Msa0358820:intron | 25.0% |
| ! | GGAAAATGTTAGAAATTTAG+TGG | + | chr3_1:44562643-44562662 | Msa0358820:intron | 25.0% |
| !!! | TTAATTTTGAGTTCAATAGG+AGG | + | chr3_1:44562832-44562851 | Msa0358820:intron | 25.0% |
| ! | ATGAATAGTTACAAAAGAGT+TGG | + | chr3_1:44563286-44563305 | Msa0358820:intron | 25.0% |
| !!! | GTAAGATTTTAGAAGGAAAA+AGG | + | chr3_1:44563332-44563351 | Msa0358820:intron | 25.0% |
| !! | AATTCAATTCGATTTTATGC+TGG | + | chr3_1:44563447-44563466 | Msa0358820:intron | 25.0% |
| !! | ATTCAATTCGATTTTATGCT+GGG | + | chr3_1:44563448-44563467 | Msa0358820:intron | 25.0% |
| ! | CAAGTTTCGAAAAAAATAGA+TGG | + | chr3_1:44563642-44563661 | Msa0358820:intron | 25.0% |
| ! | ACAAATTGATAGGAAATGAA+GGG | + | chr3_1:44563766-44563785 | Msa0358820:intron | 25.0% |
| ! | TGTTATAATAGATTTGTGGA+TGG | + | chr3_1:44563902-44563921 | Msa0358820:intron | 25.0% |
| !!! | ATTCTAAATGGGTTAACATA+TGG | + | chr3_1:44564044-44564063 | Msa0358820:intron | 25.0% |
| !! | TTTGTACAATTTTCACATGA+TGG | + | chr3_1:44564599-44564618 | Msa0358820:CDS | 25.0% |
| !! | TTGTACAATTTTCACATGAT+GGG | + | chr3_1:44564600-44564619 | Msa0358820:CDS | 25.0% |
| ! | CAAGCATATATTTCATCATT+AGG | - | chr3_1:44564680-44564699 | None:intergenic | 25.0% |
| ! | GAACATGTATTACATCAATT+TGG | - | chr3_1:44564764-44564783 | None:intergenic | 25.0% |
| ! | AACATAGAATTGAACAATGT+TGG | - | chr3_1:44564842-44564861 | None:intergenic | 25.0% |
| !! | TGTTCAATTCTATGTTACTT+TGG | + | chr3_1:44564846-44564865 | Msa0358820:intron | 25.0% |
| ! | TTAATTTAACAACCCAAACT+TGG | - | chr3_1:44564956-44564975 | None:intergenic | 25.0% |
| !!! | TAGAAATGTTTTAATCATCC+CGG | + | chr3_1:44565070-44565089 | Msa0358820:intron | 25.0% |
| ! | TATCAATATTTGCCACTATT+AGG | - | chr3_1:44565199-44565218 | None:intergenic | 25.0% |
| !!! | TTAACTTGTATTTGATCTAC+TGG | - | chr3_1:44565264-44565283 | None:intergenic | 25.0% |
| ! | AAAAAAGTGGAATTGAACAA+TGG | + | chr3_1:44565328-44565347 | Msa0358820:intron | 25.0% |
| ! | GAAAATGTTAGAATATGTTG+TGG | + | chr3_1:44565509-44565528 | Msa0358820:intron | 25.0% |
| ! | TGTAAGCTGATCAATATTTA+CGG | - | chr3_1:44565794-44565813 | None:intergenic | 25.0% |
| ! | TTACTTAATGCTATGATGTT+GGG | + | chr3_1:44565829-44565848 | Msa0358820:intron | 25.0% |
| ! | TCTATGAAGCATAAATTATG+TGG | + | chr3_1:44565909-44565928 | Msa0358820:CDS | 25.0% |
| !!! | ATTTCTGATTTGGAAATAAC+AGG | + | chr3_1:44566197-44566216 | Msa0358820:CDS | 25.0% |
| !!! | ATACATCTTTGGAATATAGA+AGG | + | chr3_1:44566380-44566399 | Msa0358820:CDS | 25.0% |
| !!! | TTTGTTATTAGATCTTGCTT+TGG | + | chr3_1:44566449-44566468 | Msa0358820:CDS | 25.0% |
| !!! | TCATGTTATTTTTGCTTTTG+AGG | + | chr3_1:44566550-44566569 | Msa0358820:intron | 25.0% |
| !! | TTGTCTGTTGACTATATTAA+AGG | - | chr3_1:44566579-44566598 | None:intergenic | 25.0% |
| ! | TGAAATTGACCAAAATGTTA+TGG | + | chr3_1:44566659-44566678 | Msa0358820:intron | 25.0% |
| ! | TGGAAATCCAATAAACTAAA+TGG | - | chr3_1:44566965-44566984 | None:intergenic | 25.0% |
| ! | CACAATAGCAATGATAAAAA+TGG | - | chr3_1:44567243-44567262 | None:intergenic | 25.0% |
| ! | CTAAAAAGTCATGATCAAAA+TGG | - | chr3_1:44567316-44567335 | None:intergenic | 25.0% |
| CACATAGAAAAATCAGTTTC+AGG | + | chr3_1:44559373-44559392 | Msa0358820:five_prime_UTR | 30.0% | |
| CGAAAGAAAAGAAGAAGAAT+CGG | - | chr3_1:44559533-44559552 | None:intergenic | 30.0% | |
| ! | CGATTCTTCTTCTTTTCTTT+CGG | + | chr3_1:44559531-44559550 | Msa0358820:intron | 30.0% |
| AGCATTTCAAAACTTGTATG+GGG | - | chr3_1:44559738-44559757 | None:intergenic | 30.0% | |
| !!! | AACTAGTTTTACACCATCAT+TGG | + | chr3_1:44559799-44559818 | Msa0358820:intron | 30.0% |
| !! | GAGTAGTTATTTTCAAAGAG+CGG | - | chr3_1:44559842-44559861 | None:intergenic | 30.0% |
| ! | ATTTGTTCCTTCACTACTTT+TGG | + | chr3_1:44559969-44559988 | Msa0358820:five_prime_UTR | 30.0% |
| ! | TGGTTGTCATACTCTTTTAT+TGG | + | chr3_1:44560006-44560025 | Msa0358820:five_prime_UTR | 30.0% |
| !! | AATTTGTTATATATGGGCTG+AGG | + | chr3_1:44560030-44560049 | Msa0358820:five_prime_UTR | 30.0% |
| !!! | AATTTCGTTCGTTTTAAAGC+TGG | - | chr3_1:44560090-44560109 | None:intergenic | 30.0% |
| !! | AGCCGCTTCATTTTTAATAT+TGG | + | chr3_1:44560452-44560471 | Msa0358820:CDS | 30.0% |
| !!! | AAATTTTTTGAGCTTCTCGA+TGG | + | chr3_1:44560480-44560499 | Msa0358820:CDS | 30.0% |
| !!! | AATTTTTTGAGCTTCTCGAT+GGG | + | chr3_1:44560481-44560500 | Msa0358820:CDS | 30.0% |
| ! | TTCTGGTCGAGATTTTATAA+GGG | + | chr3_1:44560623-44560642 | Msa0358820:CDS | 30.0% |
| TTATATTCAGATCATCACTG+TGG | + | chr3_1:44560801-44560820 | Msa0358820:CDS | 30.0% | |
| TATGTTGAAAAGATGTGTTG+AGG | + | chr3_1:44560867-44560886 | Msa0358820:intron | 30.0% | |
| TACAGTTAAAAGCTTGCAAA+AGG | - | chr3_1:44560993-44561012 | None:intergenic | 30.0% | |
| GAAAGATAAGATCAATGTGA+AGG | - | chr3_1:44561148-44561167 | None:intergenic | 30.0% | |
| TCACATTGATCTTATCTTTC+TGG | + | chr3_1:44561148-44561167 | Msa0358820:intron | 30.0% | |
| AGACAAGAGATAAGTAAGTT+TGG | - | chr3_1:44561584-44561603 | None:intergenic | 30.0% | |
| AAACTTACTTATCTCTTGTC+TGG | + | chr3_1:44561583-44561602 | Msa0358820:intron | 30.0% | |
| TGTAGATTATCCATGAGTTT+GGG | - | chr3_1:44561861-44561880 | None:intergenic | 30.0% | |
| ATGTAGATTATCCATGAGTT+TGG | - | chr3_1:44561862-44561881 | None:intergenic | 30.0% | |
| ! | AAGCATATTCTTTTGTCATC+AGG | + | chr3_1:44561918-44561937 | Msa0358820:intron | 30.0% |
| AATCAAGTGGACATGAATAT+CGG | - | chr3_1:44561980-44561999 | None:intergenic | 30.0% | |
| TATTCATGTCCACTTGATTT+AGG | + | chr3_1:44561981-44562000 | Msa0358820:intron | 30.0% | |
| TTTAATCACATGTTTCAGTC+TGG | + | chr3_1:44562023-44562042 | Msa0358820:intron | 30.0% | |
| ! | AAAAAAGAACTCTAAGGGAA+AGG | + | chr3_1:44562148-44562167 | Msa0358820:intron | 30.0% |
| GGGATGACCATTTATTATTA+GGG | + | chr3_1:44562254-44562273 | Msa0358820:intron | 30.0% | |
| GGATGACCATTTATTATTAG+GGG | + | chr3_1:44562255-44562274 | Msa0358820:intron | 30.0% | |
| AGCATACCCCTAATAATAAA+TGG | - | chr3_1:44562264-44562283 | None:intergenic | 30.0% | |
| ! | TGAACATTGAAGGCTTTTAT+TGG | + | chr3_1:44562430-44562449 | Msa0358820:intron | 30.0% |
| CTTTAATTAACGATGGAGTT+CGG | - | chr3_1:44562479-44562498 | None:intergenic | 30.0% | |
| ATGTTAACGATTAGCAGATT+TGG | - | chr3_1:44562543-44562562 | None:intergenic | 30.0% | |
| GTCCATTTCTATACTTCTAA+TGG | - | chr3_1:44562607-44562626 | None:intergenic | 30.0% | |
| TCAATAAAAATGTCCCTAGT+TGG | - | chr3_1:44562710-44562729 | None:intergenic | 30.0% | |
| ! | GAGACATGTAAGATTTTAGA+AGG | + | chr3_1:44563325-44563344 | Msa0358820:intron | 30.0% |
| CAAATCATTTGTAGAAAGCA+TGG | - | chr3_1:44563608-44563627 | None:intergenic | 30.0% | |
| CATGCTTTCTACAAATGATT+TGG | + | chr3_1:44563606-44563625 | Msa0358820:intron | 30.0% | |
| !! | ACAAATGATTTGGTTCTAGT+TGG | + | chr3_1:44563616-44563635 | Msa0358820:intron | 30.0% |
| CACAAATTGATAGGAAATGA+AGG | + | chr3_1:44563765-44563784 | Msa0358820:intron | 30.0% | |
| ! | GATGAAATGTAGGTATGTTT+TGG | + | chr3_1:44563819-44563838 | Msa0358820:intron | 30.0% |
| AATTAGAAATGTATACGTGC+GGG | - | chr3_1:44563974-44563993 | None:intergenic | 30.0% | |
| CAATTAGAAATGTATACGTG+CGG | - | chr3_1:44563975-44563994 | None:intergenic | 30.0% | |
| ACGTATACATTTCTAATTGG+AGG | + | chr3_1:44563976-44563995 | Msa0358820:intron | 30.0% | |
| ! | TTAACACATTGTAGAAGCAT+TGG | - | chr3_1:44564130-44564149 | None:intergenic | 30.0% |
| TCTACAATGTGTTAAAACCT+AGG | + | chr3_1:44564135-44564154 | Msa0358820:intron | 30.0% | |
| AATGTGTTAAAACCTAGGAT+GGG | + | chr3_1:44564140-44564159 | Msa0358820:intron | 30.0% | |
| AGATTTGTGAATGCTCTATA+TGG | + | chr3_1:44564418-44564437 | Msa0358820:intron | 30.0% | |
| GCTTTGATTGATGTTAAACA+CGG | + | chr3_1:44564444-44564463 | Msa0358820:intron | 30.0% | |
| AAAGAAATGAAGGATTGTCA+TGG | - | chr3_1:44564488-44564507 | None:intergenic | 30.0% | |
| CATGCTATAGAAAGAAATGA+AGG | - | chr3_1:44564498-44564517 | None:intergenic | 30.0% | |
| ! | TGATTTTGAACACATGAAGT+GGG | - | chr3_1:44564912-44564931 | None:intergenic | 30.0% |
| ! | TTGATTTTGAACACATGAAG+TGG | - | chr3_1:44564913-44564932 | None:intergenic | 30.0% |
| TCTCATATAAGATCCAAGTT+TGG | + | chr3_1:44564940-44564959 | Msa0358820:intron | 30.0% | |
| CTCATATAAGATCCAAGTTT+GGG | + | chr3_1:44564941-44564960 | Msa0358820:intron | 30.0% | |
| AACACAAATAAGATGCAACA+GGG | - | chr3_1:44564998-44565017 | None:intergenic | 30.0% | |
| AAACACAAATAAGATGCAAC+AGG | - | chr3_1:44564999-44565018 | None:intergenic | 30.0% | |
| AAGTGTATATACACACAAAG+TGG | - | chr3_1:44565023-44565042 | None:intergenic | 30.0% | |
| GAACAAATCTAACCTAATAG+TGG | + | chr3_1:44565184-44565203 | Msa0358820:intron | 30.0% | |
| !! | GCTCTCAATTAAATTTTAGC+CGG | + | chr3_1:44565305-44565324 | Msa0358820:intron | 30.0% |
| !! | AAATTTTAGCCGGAAAAAAG+TGG | + | chr3_1:44565315-44565334 | Msa0358820:intron | 30.0% |
| !!! | TGTTCAATTCCACTTTTTTC+CGG | - | chr3_1:44565327-44565346 | None:intergenic | 30.0% |
| TAAAGACAGAAAAAGATCAC+TGG | + | chr3_1:44565374-44565393 | Msa0358820:intron | 30.0% | |
| AGTTAATGAATGAAGCGATA+AGG | - | chr3_1:44565557-44565576 | None:intergenic | 30.0% | |
| AAGTTATGGTAGATACTTTG+TGG | - | chr3_1:44565701-44565720 | None:intergenic | 30.0% | |
| GTAAGCTGATCAATATTTAC+GGG | - | chr3_1:44565793-44565812 | None:intergenic | 30.0% | |
| GTTACTTAATGCTATGATGT+TGG | + | chr3_1:44565828-44565847 | Msa0358820:intron | 30.0% | |
| AAACAGATGAAACAGATTTC+TGG | - | chr3_1:44565938-44565957 | None:intergenic | 30.0% | |
| ! | CATTCTTTTCATAAACTTGC+AGG | - | chr3_1:44566043-44566062 | None:intergenic | 30.0% |
| CTGCAAGTTTATGAAAAGAA+TGG | + | chr3_1:44566041-44566060 | Msa0358820:CDS | 30.0% | |
| GTTTATGAAAAGAATGGTTC+TGG | + | chr3_1:44566047-44566066 | Msa0358820:CDS | 30.0% | |
| ! | GAAAGTATATACTTTCCACA+AGG | - | chr3_1:44566095-44566114 | None:intergenic | 30.0% |
| ! | TGTGGAAAGTATATACTTTC+TGG | + | chr3_1:44566095-44566114 | Msa0358820:CDS | 30.0% |
| TTCCAAATCAGAAATCTTGA+GGG | - | chr3_1:44566192-44566211 | None:intergenic | 30.0% | |
| TTTCCAAATCAGAAATCTTG+AGG | - | chr3_1:44566193-44566212 | None:intergenic | 30.0% | |
| AAAAGATAGCAGATTCTTGT+TGG | + | chr3_1:44566337-44566356 | Msa0358820:CDS | 30.0% | |
| TATTCCAAAGATGTATTTCC+TGG | - | chr3_1:44566376-44566395 | None:intergenic | 30.0% | |
| AGCAAGATCTAATAACAAAC+CGG | - | chr3_1:44566448-44566467 | None:intergenic | 30.0% | |
| ! | TTATTAGATCTTGCTTTGGA+GGG | + | chr3_1:44566453-44566472 | Msa0358820:CDS | 30.0% |
| TTCACAGGTATTACTCTAAT+TGG | + | chr3_1:44566511-44566530 | Msa0358820:intron | 30.0% | |
| ! | AGACAAGTGAAATACCATTT+TGG | + | chr3_1:44566593-44566612 | Msa0358820:intron | 30.0% |
| !! | ATTTTGGTCCATGAATTGTA+GGG | + | chr3_1:44566609-44566628 | Msa0358820:intron | 30.0% |
| ! | TTTAGCTACACAGAATCTTT+TGG | + | chr3_1:44566703-44566722 | Msa0358820:intron | 30.0% |
| ! | TTAGCTACACAGAATCTTTT+GGG | + | chr3_1:44566704-44566723 | Msa0358820:intron | 30.0% |
| !!! | TATTGAGTTTTAGCTCTATG+AGG | + | chr3_1:44566730-44566749 | Msa0358820:intron | 30.0% |
| ! | CGTCAATTTTCTAACTTTTG+AGG | + | chr3_1:44566892-44566911 | Msa0358820:intron | 30.0% |
| ! | TGTGCAACCATTTAGTTTAT+TGG | + | chr3_1:44566955-44566974 | Msa0358820:intron | 30.0% |
| ATATGTAAACCTAGCAAACA+TGG | - | chr3_1:44566985-44567004 | None:intergenic | 30.0% | |
| ! | ATGTTTGCTAGGTTTACATA+TGG | + | chr3_1:44566984-44567003 | Msa0358820:intron | 30.0% |
| CAGTCTCAAAATAACCTTTA+TGG | + | chr3_1:44567336-44567355 | Msa0358820:three_prime_UTR | 30.0% | |
| AACGCTTAAATGAACCATAA+AGG | - | chr3_1:44567353-44567372 | None:intergenic | 30.0% | |
| ! | TATGGTTCATTTAAGCGTTT+TGG | + | chr3_1:44567354-44567373 | Msa0358820:three_prime_UTR | 30.0% |
| ! | AAAATGATCAACGGACTTAC+CGG | - | chr3_1:44559489-44559508 | None:intergenic | 35.0% |
| CAGGAAGTGAAAATGATCAA+CGG | - | chr3_1:44559498-44559517 | None:intergenic | 35.0% | |
| !!! | TTTTGGAGGCATTTTGTTGT+TGG | + | chr3_1:44559986-44560005 | Msa0358820:five_prime_UTR | 35.0% |
| CGAACGAAATTGTTGTCTAA+AGG | + | chr3_1:44560099-44560118 | Msa0358820:CDS | 35.0% | |
| GGATTAAACAGTCTCTCTAA+CGG | + | chr3_1:44560120-44560139 | Msa0358820:CDS | 35.0% | |
| !! | AACGAAGTTGTTGGTTCAAA+AGG | + | chr3_1:44560216-44560235 | Msa0358820:CDS | 35.0% |
| !! | ACGAAGTTGTTGGTTCAAAA+GGG | + | chr3_1:44560217-44560236 | Msa0358820:CDS | 35.0% |
| GTTTGTAAGGATAATCACGA+AGG | + | chr3_1:44560257-44560276 | Msa0358820:CDS | 35.0% | |
| TCTCTCGGTTATAAAAAGAC+CGG | + | chr3_1:44560288-44560307 | Msa0358820:CDS | 35.0% | |
| TTTACCACAGACGAATTCAA+CGG | - | chr3_1:44560342-44560361 | None:intergenic | 35.0% | |
| GTACGCACGTTGAATAAAAT+TGG | + | chr3_1:44560405-44560424 | Msa0358820:CDS | 35.0% | |
| !!! | ATTTTTTGAGCTTCTCGATG+GGG | + | chr3_1:44560482-44560501 | Msa0358820:CDS | 35.0% |
| TGGATGCATTAAAGACATTG+AGG | + | chr3_1:44560514-44560533 | Msa0358820:CDS | 35.0% | |
| ! | CTTCTGGTCGAGATTTTATA+AGG | + | chr3_1:44560622-44560641 | Msa0358820:CDS | 35.0% |
| TTCTCAGGTATCATTACAGT+CGG | - | chr3_1:44560696-44560715 | None:intergenic | 35.0% | |
| AATGATACCTGAGAAGAGAT+TGG | + | chr3_1:44560701-44560720 | Msa0358820:CDS | 35.0% | |
| AGCATCTCGTTGCAAAATTA+GGG | - | chr3_1:44560745-44560764 | None:intergenic | 35.0% | |
| AAGCATCTCGTTGCAAAATT+AGG | - | chr3_1:44560746-44560765 | None:intergenic | 35.0% | |
| GTTTCACAACTCATTGGATA+AGG | + | chr3_1:44560770-44560789 | Msa0358820:CDS | 35.0% | |
| ! | GATACCATCTAGAACATTAC+AGG | + | chr3_1:44560833-44560852 | Msa0358820:CDS | 35.0% |
| ! | CTAACCTGTAATGTTCTAGA+TGG | - | chr3_1:44560840-44560859 | None:intergenic | 35.0% |
| GATCAATGTGAAGGTTACAT+CGG | - | chr3_1:44561139-44561158 | None:intergenic | 35.0% | |
| ! | TACATCACTTGCTGAAAAGT+GGG | - | chr3_1:44561301-44561320 | None:intergenic | 35.0% |
| GGTAACAAAAACAACACTAG+TGG | - | chr3_1:44561455-44561474 | None:intergenic | 35.0% | |
| TTACTTATCTCTTGTCTGGT+TGG | + | chr3_1:44561587-44561606 | Msa0358820:intron | 35.0% | |
| GTGACACACAAAAAAGAACA+GGG | - | chr3_1:44561760-44561779 | None:intergenic | 35.0% | |
| AACTATAACCTGAGCATTCA+GGG | - | chr3_1:44561888-44561907 | None:intergenic | 35.0% | |
| AAACTATAACCTGAGCATTC+AGG | - | chr3_1:44561889-44561908 | None:intergenic | 35.0% | |
| AGTTATGTGCCTAAATCAAG+TGG | - | chr3_1:44561993-44562012 | None:intergenic | 35.0% | |
| ACATGTGATTAAATTTGGGC+TGG | - | chr3_1:44562016-44562035 | None:intergenic | 35.0% | |
| CAGGCAAAAAAGAACTCTAA+GGG | + | chr3_1:44562143-44562162 | Msa0358820:intron | 35.0% | |
| AACATTAAGGAGTTAGGGAA+TGG | - | chr3_1:44562229-44562248 | None:intergenic | 35.0% | |
| CTCACAACATTAAGGAGTTA+GGG | - | chr3_1:44562234-44562253 | None:intergenic | 35.0% | |
| CTAACTCCTTAATGTTGTGA+GGG | + | chr3_1:44562233-44562252 | Msa0358820:intron | 35.0% | |
| TAACTCCTTAATGTTGTGAG+GGG | + | chr3_1:44562234-44562253 | Msa0358820:intron | 35.0% | |
| GGGGATGACCATTTATTATT+AGG | + | chr3_1:44562253-44562272 | Msa0358820:intron | 35.0% | |
| GTGACACTAATGAACATTGA+AGG | + | chr3_1:44562420-44562439 | Msa0358820:intron | 35.0% | |
| ! | ATTGAAGGCTTTTATTGGAC+AGG | + | chr3_1:44562435-44562454 | Msa0358820:intron | 35.0% |
| CGAACTCCATCGTTAATTAA+AGG | + | chr3_1:44562477-44562496 | Msa0358820:intron | 35.0% | |
| AAGATGCATGTCTCCTTAAT+TGG | + | chr3_1:44562762-44562781 | Msa0358820:intron | 35.0% | |
| CCAAACTGCAATTCCAATTA+AGG | - | chr3_1:44562778-44562797 | None:intergenic | 35.0% | |
| CCTTAATTGGAATTGCAGTT+TGG | + | chr3_1:44562775-44562794 | Msa0358820:intron | 35.0% | |
| AGAACATAGTGTTAGGATAC+TGG | + | chr3_1:44562880-44562899 | Msa0358820:intron | 35.0% | |
| GAACATAGTGTTAGGATACT+GGG | + | chr3_1:44562881-44562900 | Msa0358820:intron | 35.0% | |
| TGAGAGTGGAAGAAAAGATA+TGG | + | chr3_1:44563000-44563019 | Msa0358820:intron | 35.0% | |
| GATTGAATTGTCTCTTCTCA+AGG | + | chr3_1:44563059-44563078 | Msa0358820:intron | 35.0% | |
| !!! | TTTGTTTTGGGTTGCTTTCA+AGG | + | chr3_1:44563263-44563282 | Msa0358820:intron | 35.0% |
| ! | AGAAGGAAAAAGGCATAAGA+TGG | + | chr3_1:44563342-44563361 | Msa0358820:intron | 35.0% |
| GTAAGAGAATTCTAGATGAG+TGG | + | chr3_1:44563395-44563414 | Msa0358820:intron | 35.0% | |
| AGTATTCTTTACCTTGGTCT+TGG | + | chr3_1:44563549-44563568 | Msa0358820:intron | 35.0% | |
| TAGATGGGAAGTAAGAATTG+TGG | + | chr3_1:44563658-44563677 | Msa0358820:intron | 35.0% | |
| TCGTAAGCACACAAATTGAT+AGG | + | chr3_1:44563756-44563775 | Msa0358820:intron | 35.0% | |
| GTAAACCATAGAATACAAGC+TGG | + | chr3_1:44563793-44563812 | Msa0358820:intron | 35.0% | |
| !! | TATGTTTTGGACTCATTGCT+GGG | + | chr3_1:44563832-44563851 | Msa0358820:intron | 35.0% |
| AAGCCTTGATACTCCAAAAA+TGG | + | chr3_1:44563934-44563953 | Msa0358820:intron | 35.0% | |
| !!! | TCTCCATTTTTGGAGTATCA+AGG | - | chr3_1:44563940-44563959 | None:intergenic | 35.0% |
| CGCACGTATACATTTCTAAT+TGG | + | chr3_1:44563973-44563992 | Msa0358820:intron | 35.0% | |
| CAATGTGTTAAAACCTAGGA+TGG | + | chr3_1:44564139-44564158 | Msa0358820:intron | 35.0% | |
| CCATTGCAGAAAATATGTCA+CGG | - | chr3_1:44564167-44564186 | None:intergenic | 35.0% | |
| ! | CGTGACATATTTTCTGCAAT+GGG | + | chr3_1:44564165-44564184 | Msa0358820:intron | 35.0% |
| ATCTGTGACATTGATCTTGT+CGG | + | chr3_1:44564270-44564289 | Msa0358820:intron | 35.0% | |
| AAACCATACTTCATCGTCAT+GGG | - | chr3_1:44564582-44564601 | None:intergenic | 35.0% | |
| ATGATCGAACTGCAATCATT+TGG | + | chr3_1:44564645-44564664 | Msa0358820:CDS | 35.0% | |
| TGATCGAACTGCAATCATTT+GGG | + | chr3_1:44564646-44564665 | Msa0358820:CDS | 35.0% | |
| TACAATTGGTCACTGCATTT+AGG | - | chr3_1:44564723-44564742 | None:intergenic | 35.0% | |
| GTTCTCTTCTACAGTTACAT+AGG | + | chr3_1:44564780-44564799 | Msa0358820:intron | 35.0% | |
| GTTATCAATAGCATAATCCC+TGG | + | chr3_1:44564815-44564834 | Msa0358820:intron | 35.0% | |
| AATTGAACAATGTTGGACCA+GGG | - | chr3_1:44564835-44564854 | None:intergenic | 35.0% | |
| ACTTAGCAAAGCAAAGAACT+CGG | + | chr3_1:44565218-44565237 | Msa0358820:intron | 35.0% | |
| AAGAACTCGGCAATAATAGT+AGG | + | chr3_1:44565231-44565250 | Msa0358820:intron | 35.0% | |
| ATGTTAGAATATGTTGTGGG+TGG | + | chr3_1:44565513-44565532 | Msa0358820:intron | 35.0% | |
| TGTTAGAATATGTTGTGGGT+GGG | + | chr3_1:44565514-44565533 | Msa0358820:intron | 35.0% | |
| TAATGAATGAAGCGATAAGG+TGG | - | chr3_1:44565554-44565573 | None:intergenic | 35.0% | |
| ATATCCAGGGAATATAAGGT+TGG | - | chr3_1:44565599-44565618 | None:intergenic | 35.0% | |
| AGTATCTACCATAACTTGAC+TGG | + | chr3_1:44565704-44565723 | Msa0358820:intron | 35.0% | |
| GTATCTACCATAACTTGACT+GGG | + | chr3_1:44565705-44565724 | Msa0358820:intron | 35.0% | |
| ! | TTATTTGGCCTTCCTTCTAT+AGG | + | chr3_1:44565866-44565885 | Msa0358820:intron | 35.0% |
| CATTTGTGTCTACCTATAGA+AGG | - | chr3_1:44565881-44565900 | None:intergenic | 35.0% | |
| CTTCTATAGGTAGACACAAA+TGG | + | chr3_1:44565879-44565898 | Msa0358820:intron | 35.0% | |
| AATCTGTTTCATCTGTTTCC+TGG | + | chr3_1:44565940-44565959 | Msa0358820:CDS | 35.0% | |
| ! | AAGTATATACTTTCTGGCCT+CGG | + | chr3_1:44566101-44566120 | Msa0358820:CDS | 35.0% |
| !! | TGACAAAAGCATTTGCATGT+GGG | + | chr3_1:44566124-44566143 | Msa0358820:CDS | 35.0% |
| ATTTGCATGTGGGAATTAGA+CGG | + | chr3_1:44566134-44566153 | Msa0358820:CDS | 35.0% | |
| AAAGAAGTTGAGTCTTGGAA+AGG | + | chr3_1:44566158-44566177 | Msa0358820:CDS | 35.0% | |
| AACCCTCAAGATTTCTGATT+TGG | + | chr3_1:44566187-44566206 | Msa0358820:CDS | 35.0% | |
| GATTTGGAAATAACAGGTGA+CGG | + | chr3_1:44566203-44566222 | Msa0358820:CDS | 35.0% | |
| ATTTGGAAATAACAGGTGAC+GGG | + | chr3_1:44566204-44566223 | Msa0358820:CDS | 35.0% | |
| GCTCTTCAATAAAGAAACGA+AGG | + | chr3_1:44566265-44566284 | Msa0358820:CDS | 35.0% | |
| GGTTGAGAGATTTATTGAAG+AGG | + | chr3_1:44566286-44566305 | Msa0358820:CDS | 35.0% | |
| TGAACCAGGAAATACATCTT+TGG | + | chr3_1:44566369-44566388 | Msa0358820:CDS | 35.0% | |
| ! | AAGGAGATCTTAAGCTTGTT+GGG | + | chr3_1:44566399-44566418 | Msa0358820:CDS | 35.0% |
| GCAAGATCTAATAACAAACC+GGG | - | chr3_1:44566447-44566466 | None:intergenic | 35.0% | |
| GTTATTAGATCTTGCTTTGG+AGG | + | chr3_1:44566452-44566471 | Msa0358820:CDS | 35.0% | |
| AAGCAATCGTTTATTGCTAG+TGG | + | chr3_1:44566479-44566498 | Msa0358820:CDS | 35.0% | |
| CTACAATTCATGGACCAAAA+TGG | - | chr3_1:44566610-44566629 | None:intergenic | 35.0% | |
| !! | CATTTTGGTCCATGAATTGT+AGG | + | chr3_1:44566608-44566627 | Msa0358820:intron | 35.0% |
| ! | TTTTGGTCCATGAATTGTAG+GGG | + | chr3_1:44566610-44566629 | Msa0358820:intron | 35.0% |
| AAATATTTGCACACGGAAGA+CGG | + | chr3_1:44566821-44566840 | Msa0358820:intron | 35.0% | |
| ATTGGATTTCCATGTTTGCT+AGG | + | chr3_1:44566973-44566992 | Msa0358820:intron | 35.0% | |
| ! | GTAACTTGTAAGGACAGTAA+AGG | - | chr3_1:44567276-44567295 | None:intergenic | 35.0% |
| ! | GTGTCTACTTGTAACTTGTA+AGG | - | chr3_1:44567286-44567305 | None:intergenic | 35.0% |
| ! | CGTTGATCATTTTCACTTCC+TGG | + | chr3_1:44559496-44559515 | Msa0358820:intron | 40.0% |
| ! | ATTTTCACTTCCTGGATCTG+CGG | + | chr3_1:44559504-44559523 | Msa0358820:intron | 40.0% |
| ! | GTTTAATGGAAGTGCACTGA+CGG | + | chr3_1:44559772-44559791 | Msa0358820:intron | 40.0% |
| !! | TGTTCCTTCACTACTTTTGG+AGG | + | chr3_1:44559972-44559991 | Msa0358820:five_prime_UTR | 40.0% |
| AATGCCTCCAAAAGTAGTGA+AGG | - | chr3_1:44559979-44559998 | None:intergenic | 40.0% | |
| !! | ACGAAGGCATTGTATTCTCT+CGG | + | chr3_1:44560273-44560292 | Msa0358820:CDS | 40.0% |
| CTCTCGGTTATAAAAAGACC+GGG | + | chr3_1:44560289-44560308 | Msa0358820:CDS | 40.0% | |
| TCTCGGTTATAAAAAGACCG+GGG | + | chr3_1:44560290-44560309 | Msa0358820:CDS | 40.0% | |
| GGTAAATGTGTTTATGCAGC+AGG | + | chr3_1:44560356-44560375 | Msa0358820:CDS | 40.0% | |
| TTTATGCAGCAGGTACTTGA+TGG | + | chr3_1:44560366-44560385 | Msa0358820:CDS | 40.0% | |
| ! | ATTTTATAAGGGCGAGGACT+CGG | + | chr3_1:44560634-44560653 | Msa0358820:CDS | 40.0% |
| TCTCAGGTATCATTACAGTC+GGG | - | chr3_1:44560695-44560714 | None:intergenic | 40.0% | |
| AGATGTTCCAATCTCTTCTC+AGG | - | chr3_1:44560711-44560730 | None:intergenic | 40.0% | |
| TTGCTCGTTTCACAACTCAT+TGG | + | chr3_1:44560764-44560783 | Msa0358820:CDS | 40.0% | |
| ! | CAAAATCTCCGTTGTTGACT+TGG | + | chr3_1:44560931-44560950 | Msa0358820:intron | 40.0% |
| ACCAACTACCAAGTCAACAA+CGG | - | chr3_1:44560942-44560961 | None:intergenic | 40.0% | |
| ! | CCATTTTGAGCTGCTCTTAT+GGG | - | chr3_1:44561223-44561242 | None:intergenic | 40.0% |
| ! | ACCATTTTGAGCTGCTCTTA+TGG | - | chr3_1:44561224-44561243 | None:intergenic | 40.0% |
| GAGCAGCTCAAAATGGTAAA+AGG | + | chr3_1:44561227-44561246 | Msa0358820:intron | 40.0% | |
| TGTAGCGACATTTGATATGC+TGG | + | chr3_1:44561251-44561270 | Msa0358820:intron | 40.0% | |
| GTAGCGACATTTGATATGCT+GGG | + | chr3_1:44561252-44561271 | Msa0358820:intron | 40.0% | |
| TAGCGACATTTGATATGCTG+GGG | + | chr3_1:44561253-44561272 | Msa0358820:intron | 40.0% | |
| TTGCTGAAAAGTGGGGAATT+GGG | - | chr3_1:44561293-44561312 | None:intergenic | 40.0% | |
| ! | ACATCACTTGCTGAAAAGTG+GGG | - | chr3_1:44561300-44561319 | None:intergenic | 40.0% |
| ! | CTACATCACTTGCTGAAAAG+TGG | - | chr3_1:44561302-44561321 | None:intergenic | 40.0% |
| ! | CACTTTTCAGCAAGTGATGT+AGG | + | chr3_1:44561300-44561319 | Msa0358820:intron | 40.0% |
| TGTAGGTGAATTTCGCTACT+AGG | + | chr3_1:44561317-44561336 | Msa0358820:intron | 40.0% | |
| ! | AAGGTGCACTGCAAATGTTT+TGG | - | chr3_1:44561402-44561421 | None:intergenic | 40.0% |
| ACAACTAGAAGAGGCTTCAA+AGG | - | chr3_1:44561622-44561641 | None:intergenic | 40.0% | |
| AACAAGCACAGATGGAAACA+GGG | - | chr3_1:44561680-44561699 | None:intergenic | 40.0% | |
| CACAAAAAAGAACAGGGACA+GGG | - | chr3_1:44561754-44561773 | None:intergenic | 40.0% | |
| ACACAAAAAAGAACAGGGAC+AGG | - | chr3_1:44561755-44561774 | None:intergenic | 40.0% | |
| CGTGACACACAAAAAAGAAC+AGG | - | chr3_1:44561761-44561780 | None:intergenic | 40.0% | |
| TGTGACGATGATACCACATA+TGG | - | chr3_1:44561950-44561969 | None:intergenic | 40.0% | |
| GCAGGCAAAAAAGAACTCTA+AGG | + | chr3_1:44562142-44562161 | Msa0358820:intron | 40.0% | |
| TAAGGAGTTAGGGAATGGTT+TGG | - | chr3_1:44562224-44562243 | None:intergenic | 40.0% | |
| CCTCACAACATTAAGGAGTT+AGG | - | chr3_1:44562235-44562254 | None:intergenic | 40.0% | |
| CCTAACTCCTTAATGTTGTG+AGG | + | chr3_1:44562232-44562251 | Msa0358820:intron | 40.0% | |
| ! | TGGACTAGAATTTGGTCAGT+AGG | + | chr3_1:44562622-44562641 | Msa0358820:intron | 40.0% |
| !! | AGCTTGGTTGGTAAGATGAA+GGG | - | chr3_1:44562686-44562705 | None:intergenic | 40.0% |
| TAGTGTTAGGATACTGGGTT+TGG | + | chr3_1:44562886-44562905 | Msa0358820:intron | 40.0% | |
| AGTGTTAGGATACTGGGTTT+GGG | + | chr3_1:44562887-44562906 | Msa0358820:intron | 40.0% | |
| TTTGGGCTAAGACCAACAAA+TGG | + | chr3_1:44562904-44562923 | Msa0358820:intron | 40.0% | |
| TTGGGCTAAGACCAACAAAT+GGG | + | chr3_1:44562905-44562924 | Msa0358820:intron | 40.0% | |
| AATAGAGAGGTTAGAGGAGA+TGG | + | chr3_1:44562931-44562950 | Msa0358820:intron | 40.0% | |
| ATAGAGAGGTTAGAGGAGAT+GGG | + | chr3_1:44562932-44562951 | Msa0358820:intron | 40.0% | |
| AAGAGGCAGTTGTTTACAGA+GGG | + | chr3_1:44562975-44562994 | Msa0358820:intron | 40.0% | |
| TCTCTTACACGTCATAGTCT+GGG | - | chr3_1:44563383-44563402 | None:intergenic | 40.0% | |
| TTCTCTTACACGTCATAGTC+TGG | - | chr3_1:44563384-44563403 | None:intergenic | 40.0% | |
| !! | TCTTTACCTTGGTCTTGGTT+TGG | + | chr3_1:44563554-44563573 | Msa0358820:intron | 40.0% |
| !! | CTTTACCTTGGTCTTGGTTT+GGG | + | chr3_1:44563555-44563574 | Msa0358820:intron | 40.0% |
| ! | TTGTAGAAAGCATGGCATCA+TGG | - | chr3_1:44563600-44563619 | None:intergenic | 40.0% |
| AGAATTGTGGTCACAAGTTC+TGG | + | chr3_1:44563671-44563690 | Msa0358820:intron | 40.0% | |
| !! | GTATGTTTTGGACTCATTGC+TGG | + | chr3_1:44563831-44563850 | Msa0358820:intron | 40.0% |
| ! | CATGGGTACTTCTCCATTTT+TGG | - | chr3_1:44563950-44563969 | None:intergenic | 40.0% |
| !! | TGTAGAAGCATTGGTGAAGA+GGG | - | chr3_1:44564121-44564140 | None:intergenic | 40.0% |
| !! | TTGTAGAAGCATTGGTGAAG+AGG | - | chr3_1:44564122-44564141 | None:intergenic | 40.0% |
| ! | CCGTGACATATTTTCTGCAA+TGG | + | chr3_1:44564164-44564183 | Msa0358820:intron | 40.0% |
| !! | AGAATGTCACGATGGATTAG+CGG | - | chr3_1:44564249-44564268 | None:intergenic | 40.0% |
| TCTGTGACATTGATCTTGTC+GGG | + | chr3_1:44564271-44564290 | Msa0358820:intron | 40.0% | |
| CAAACCATACTTCATCGTCA+TGG | - | chr3_1:44564583-44564602 | None:intergenic | 40.0% | |
| AGTTCGATCATTTGATGCTG+TGG | - | chr3_1:44564636-44564655 | None:intergenic | 40.0% | |
| GAATTGAACAATGTTGGACC+AGG | - | chr3_1:44564836-44564855 | None:intergenic | 40.0% | |
| !! | TGAACACATGAAGTGGGTTA+TGG | - | chr3_1:44564906-44564925 | None:intergenic | 40.0% |
| AGTTTACATGGCATCATCAC+CGG | - | chr3_1:44565092-44565111 | None:intergenic | 40.0% | |
| ACTCGGCAATAATAGTAGGA+AGG | + | chr3_1:44565235-44565254 | Msa0358820:intron | 40.0% | |
| CAGAAAAAGATCACTGGTGA+TGG | + | chr3_1:44565380-44565399 | Msa0358820:intron | 40.0% | |
| GTTAGAATATGTTGTGGGTG+GGG | + | chr3_1:44565515-44565534 | Msa0358820:intron | 40.0% | |
| GTCAAAACAGCAACTTGTAG+AGG | - | chr3_1:44565667-44565686 | None:intergenic | 40.0% | |
| TGTGTCTACCTATAGAAGGA+AGG | - | chr3_1:44565877-44565896 | None:intergenic | 40.0% | |
| CTATAGGTAGACACAAATGG+TGG | + | chr3_1:44565882-44565901 | Msa0358820:intron | 40.0% | |
| !! | GTGACAAAAGCATTTGCATG+TGG | + | chr3_1:44566123-44566142 | Msa0358820:CDS | 40.0% |
| TTTGCATGTGGGAATTAGAC+GGG | + | chr3_1:44566135-44566154 | Msa0358820:CDS | 40.0% | |
| TTTGGAAATAACAGGTGACG+GGG | + | chr3_1:44566205-44566224 | Msa0358820:CDS | 40.0% | |
| GTTGGTTAATCTTCTGAACC+AGG | + | chr3_1:44566355-44566374 | Msa0358820:CDS | 40.0% | |
| GAAGGAGATCTTAAGCTTGT+TGG | + | chr3_1:44566398-44566417 | Msa0358820:CDS | 40.0% | |
| ATAAAAGTCATAGACGCTCC+CGG | + | chr3_1:44566426-44566445 | Msa0358820:CDS | 40.0% | |
| GTTTATTGCTAGTGGAAGTG+AGG | + | chr3_1:44566487-44566506 | Msa0358820:CDS | 40.0% | |
| GACCAAAATGTTATGGAACG+TGG | + | chr3_1:44566666-44566685 | Msa0358820:intron | 40.0% | |
| ! | GACCACGTTCCATAACATTT+TGG | - | chr3_1:44566671-44566690 | None:intergenic | 40.0% |
| ATTCCAGCTCACACAGTTAA+CGG | - | chr3_1:44567059-44567078 | None:intergenic | 40.0% | |
| AACTCAAATGCCTACAGCAA+TGG | + | chr3_1:44567160-44567179 | Msa0358820:CDS | 40.0% | |
| TTGTAGGGGAACTTAGATGA+AGG | + | chr3_1:44567201-44567220 | Msa0358820:exon | 40.0% | |
| ! | AAAAGCGATCTGAAGTTCGC+CGG | - | chr3_1:44559457-44559476 | None:intergenic | 45.0% |
| !! | GATCGCTTTTCTTGCTTCTC+CGG | + | chr3_1:44559467-44559486 | Msa0358820:five_prime_UTR | 45.0% |
| CTCTAACGGTTCATCTTCTG+TGG | + | chr3_1:44560134-44560153 | Msa0358820:CDS | 45.0% | |
| TCTTCTGTGGAGTGTGTTGT+AGG | + | chr3_1:44560147-44560166 | Msa0358820:CDS | 45.0% | |
| AGGATCTTCGAGTGACTTGA+TGG | + | chr3_1:44560167-44560186 | Msa0358820:CDS | 45.0% | |
| CATACCGTTGAATTCGTCTG+TGG | + | chr3_1:44560335-44560354 | Msa0358820:CDS | 45.0% | |
| !! | AGCAGGTACTTGATGGTGAT+TGG | + | chr3_1:44560373-44560392 | Msa0358820:CDS | 45.0% |
| !! | GCAGGTACTTGATGGTGATT+GGG | + | chr3_1:44560374-44560393 | Msa0358820:CDS | 45.0% |
| TCTCGATGGGGATAAGGTTA+TGG | + | chr3_1:44560494-44560513 | Msa0358820:CDS | 45.0% | |
| ACCAGAAGAACCACATTGGT+CGG | - | chr3_1:44560610-44560629 | None:intergenic | 45.0% | |
| ! | GTCGAGATTTTATAAGGGCG+AGG | + | chr3_1:44560628-44560647 | Msa0358820:CDS | 45.0% |
| TCAGGTATCATTACAGTCGG+GGG | - | chr3_1:44560693-44560712 | None:intergenic | 45.0% | |
| CTCAGGTATCATTACAGTCG+GGG | - | chr3_1:44560694-44560713 | None:intergenic | 45.0% | |
| !! | TCCGTTGTTGACTTGGTAGT+TGG | + | chr3_1:44560938-44560957 | Msa0358820:intron | 45.0% |
| !! | GTTGACTTGGTAGTTGGTAG+TGG | + | chr3_1:44560944-44560963 | Msa0358820:intron | 45.0% |
| CCCATAAGAGCAGCTCAAAA+TGG | + | chr3_1:44561220-44561239 | Msa0358820:intron | 45.0% | |
| TGCTGAAAAGTGGGGAATTG+GGG | - | chr3_1:44561292-44561311 | None:intergenic | 45.0% | |
| CTTGCTGAAAAGTGGGGAAT+TGG | - | chr3_1:44561294-44561313 | None:intergenic | 45.0% | |
| ACTAGAAGAGGCTTCAAAGG+AGG | - | chr3_1:44561619-44561638 | None:intergenic | 45.0% | |
| ! | AAGCCTCTTCTAGTTGTCTG+TGG | + | chr3_1:44561625-44561644 | Msa0358820:intron | 45.0% |
| GAACCACAGACAACTAGAAG+AGG | - | chr3_1:44561631-44561650 | None:intergenic | 45.0% | |
| GTGGTTCTCAACCATATCCT+TGG | + | chr3_1:44561644-44561663 | Msa0358820:intron | 45.0% | |
| ACAAGCACAGATGGAAACAG+GGG | - | chr3_1:44561679-44561698 | None:intergenic | 45.0% | |
| CAACAAGCACAGATGGAAAC+AGG | - | chr3_1:44561681-44561700 | None:intergenic | 45.0% | |
| CTGAAGTCAACAAGCACAGA+TGG | - | chr3_1:44561688-44561707 | None:intergenic | 45.0% | |
| AAGCCACTGCTTAAAGCAGA+AGG | + | chr3_1:44561819-44561838 | Msa0358820:intron | 45.0% | |
| ! | TTGCCTTCTGCTTTAAGCAG+TGG | - | chr3_1:44561825-44561844 | None:intergenic | 45.0% |
| TACATCAACCCTGAATGCTC+AGG | + | chr3_1:44561877-44561896 | Msa0358820:intron | 45.0% | |
| CATCAGGAGAGTTCCATATG+TGG | + | chr3_1:44561934-44561953 | Msa0358820:intron | 45.0% | |
| TGTGGTATCATCGTCACACT+TGG | + | chr3_1:44561952-44561971 | Msa0358820:intron | 45.0% | |
| CACATGTTTCAGTCTGGCAA+TGG | + | chr3_1:44562029-44562048 | Msa0358820:intron | 45.0% | |
| GTCATCCCCTCACAACATTA+AGG | - | chr3_1:44562242-44562261 | None:intergenic | 45.0% | |
| TTAACGATGGAGTTCGGCTT+TGG | - | chr3_1:44562473-44562492 | None:intergenic | 45.0% | |
| !! | GGTAAGATGAAGGGCATTGA+AGG | - | chr3_1:44562677-44562696 | None:intergenic | 45.0% |
| !! | CAGCTTGGTTGGTAAGATGA+AGG | - | chr3_1:44562687-44562706 | None:intergenic | 45.0% |
| TCTCTATTCCGCCCATTTGT+TGG | - | chr3_1:44562919-44562938 | None:intergenic | 45.0% | |
| AACAAATGGGCGGAATAGAG+AGG | + | chr3_1:44562918-44562937 | Msa0358820:intron | 45.0% | |
| CTTCCAACTAACTGCCACAT+CGG | - | chr3_1:44562958-44562977 | None:intergenic | 45.0% | |
| ATGTGGCAGTTAGTTGGAAG+AGG | + | chr3_1:44562958-44562977 | Msa0358820:intron | 45.0% | |
| GAAGAGGCAGTTGTTTACAG+AGG | + | chr3_1:44562974-44562993 | Msa0358820:intron | 45.0% | |
| TTCTCAAGGAGCAATAGCTC+TGG | + | chr3_1:44563073-44563092 | Msa0358820:intron | 45.0% | |
| GAATACCCAAACCAAGACCA+AGG | - | chr3_1:44563563-44563582 | None:intergenic | 45.0% | |
| ACCATAGAATACAAGCTGGC+TGG | + | chr3_1:44563797-44563816 | Msa0358820:intron | 45.0% | |
| TCCAGCCAGCTTGTATTCTA+TGG | - | chr3_1:44563801-44563820 | None:intergenic | 45.0% | |
| AAGCTGGCTGGATGAAATGT+AGG | + | chr3_1:44563809-44563828 | Msa0358820:intron | 45.0% | |
| AGATTTGTGGATGGACACCT+AGG | + | chr3_1:44563911-44563930 | Msa0358820:intron | 45.0% | |
| ! | TTGGAGTATCAAGGCTTCCT+AGG | - | chr3_1:44563931-44563950 | None:intergenic | 45.0% |
| AATGTATACGTGCGGGACAT+GGG | - | chr3_1:44563967-44563986 | None:intergenic | 45.0% | |
| AAATGTATACGTGCGGGACA+TGG | - | chr3_1:44563968-44563987 | None:intergenic | 45.0% | |
| TGGTCGAGTCGTTAGAGATA+GGG | - | chr3_1:44564083-44564102 | None:intergenic | 45.0% | |
| ATGGTCGAGTCGTTAGAGAT+AGG | - | chr3_1:44564084-44564103 | None:intergenic | 45.0% | |
| CACAGATGAGAATGTCACGA+TGG | - | chr3_1:44564257-44564276 | None:intergenic | 45.0% | |
| ATGCCCATGACGATGAAGTA+TGG | + | chr3_1:44564576-44564595 | Msa0358820:CDS | 45.0% | |
| TCGAACTGCAATCATTTGGG+AGG | + | chr3_1:44564649-44564668 | Msa0358820:CDS | 45.0% | |
| GTTTACATGGCATCATCACC+GGG | - | chr3_1:44565091-44565110 | None:intergenic | 45.0% | |
| !! | AGATCACTGGTGATGGAATC+TGG | + | chr3_1:44565387-44565406 | Msa0358820:intron | 45.0% |
| TGCTGGATAGTGCATGAGAA+TGG | + | chr3_1:44565411-44565430 | Msa0358820:intron | 45.0% | |
| CAAGACTTCACTGGAGTTGT+TGG | + | chr3_1:44565443-44565462 | Msa0358820:intron | 45.0% | |
| TTCACTGGAGTTGTTGGATC+TGG | + | chr3_1:44565449-44565468 | Msa0358820:intron | 45.0% | |
| TCACTGGAGTTGTTGGATCT+GGG | + | chr3_1:44565450-44565469 | Msa0358820:intron | 45.0% | |
| !! | ATAAGGTTGGCTTGGTGGTT+GGG | - | chr3_1:44565586-44565605 | None:intergenic | 45.0% |
| !! | TATAAGGTTGGCTTGGTGGT+TGG | - | chr3_1:44565587-44565606 | None:intergenic | 45.0% |
| !! | GGAATATAAGGTTGGCTTGG+TGG | - | chr3_1:44565591-44565610 | None:intergenic | 45.0% |
| ! | CAGGGAATATAAGGTTGGCT+TGG | - | chr3_1:44565594-44565613 | None:intergenic | 45.0% |
| CAAGCCAACCTTATATTCCC+TGG | + | chr3_1:44565592-44565611 | Msa0358820:intron | 45.0% | |
| GGGCATATCCAGGGAATATA+AGG | - | chr3_1:44565603-44565622 | None:intergenic | 45.0% | |
| ! | AGTAATGGAGGGCATATCCA+GGG | - | chr3_1:44565612-44565631 | None:intergenic | 45.0% |
| CAAAAGGTCTCAGCGAGTAA+TGG | - | chr3_1:44565627-44565646 | None:intergenic | 45.0% | |
| CACATCACCCAGTCAAGTTA+TGG | - | chr3_1:44565715-44565734 | None:intergenic | 45.0% | |
| TCTGTTTCCTGGAGTCCTAA+TGG | + | chr3_1:44565951-44565970 | Msa0358820:CDS | 45.0% | |
| GTAAGAAGCTCTTGGCCATT+AGG | - | chr3_1:44565969-44565988 | None:intergenic | 45.0% | |
| CTCCACATGTAAGAAGCTCT+TGG | - | chr3_1:44565977-44565996 | None:intergenic | 45.0% | |
| AGAGCTTCTTACATGTGGAG+TGG | + | chr3_1:44565977-44565996 | Msa0358820:CDS | 45.0% | |
| ! | TGCAAATGCTTTTGTCACCG+AGG | - | chr3_1:44566121-44566140 | None:intergenic | 45.0% |
| ACGGGAAAGAAGTTGAGTCT+TGG | + | chr3_1:44566153-44566172 | Msa0358820:CDS | 45.0% | |
| TAGTGGAAGTGAGGATTCAC+AGG | + | chr3_1:44566496-44566515 | Msa0358820:CDS | 45.0% | |
| TTATGGAACGTGGTCGTTGT+CGG | + | chr3_1:44566676-44566695 | Msa0358820:intron | 45.0% | |
| TACATATGGCACAGAAGCTC+AGG | + | chr3_1:44566998-44567017 | Msa0358820:CDS | 45.0% | |
| ACATATGGCACAGAAGCTCA+GGG | + | chr3_1:44566999-44567018 | Msa0358820:CDS | 45.0% | |
| GACACTTTAAGCCCCATATC+CGG | - | chr3_1:44567129-44567148 | None:intergenic | 45.0% | |
| ! | GATATGGGGCTTAAAGTGTC+TGG | + | chr3_1:44567129-44567148 | Msa0358820:CDS | 45.0% |
| AATGCCTACAGCAATGGCAA+CGG | + | chr3_1:44567166-44567185 | Msa0358820:CDS | 45.0% | |
| ACGGTCATCACTGCAATTGT+AGG | + | chr3_1:44567185-44567204 | Msa0358820:CDS | 45.0% | |
| CGGTCATCACTGCAATTGTA+GGG | + | chr3_1:44567186-44567205 | Msa0358820:CDS | 45.0% | |
| GGTCATCACTGCAATTGTAG+GGG | + | chr3_1:44567187-44567206 | Msa0358820:CDS | 45.0% | |
| !! | GTAAAATTTATTATTTAATT+AGG | - | chr3_1:44562115-44562134 | None:intergenic | 5.0% |
| !! | TAATTTAATTCATAAATTTA+AGG | + | chr3_1:44565042-44565061 | Msa0358820:intron | 5.0% |
| !!! | TTTTTAATTTTTACTTTATT+TGG | + | chr3_1:44565482-44565501 | Msa0358820:intron | 5.0% |
| ! | GGCTGAGGCGCATTTTTCAT+GGG | + | chr3_1:44560045-44560064 | Msa0358820:exon | 50.0% |
| ! | TGAGGCGCATTTTTCATGGG+AGG | + | chr3_1:44560048-44560067 | Msa0358820:exon | 50.0% |
| ! | CGCATTTTTCATGGGAGGTG+TGG | + | chr3_1:44560053-44560072 | Msa0358820:exon | 50.0% |
| ! | CTTCGAGTGACTTGATGGCT+CGG | + | chr3_1:44560172-44560191 | Msa0358820:CDS | 50.0% |
| TTGTCCCCTTCAGATGGTAG+GGG | - | chr3_1:44560198-44560217 | None:intergenic | 50.0% | |
| GTTGTCCCCTTCAGATGGTA+GGG | - | chr3_1:44560199-44560218 | None:intergenic | 50.0% | |
| ACTTCGTTGTCCCCTTCAGA+TGG | - | chr3_1:44560204-44560223 | None:intergenic | 50.0% | |
| GAAGGGGACAACGAAGTTGT+TGG | + | chr3_1:44560207-44560226 | Msa0358820:CDS | 50.0% | |
| AAAGACCGGGGAAAACCTAG+AGG | + | chr3_1:44560302-44560321 | Msa0358820:CDS | 50.0% | |
| GAAAACCTAGAGGAGGAGTC+TGG | + | chr3_1:44560312-44560331 | Msa0358820:CDS | 50.0% | |
| !! | GGTACTTGATGGTGATTGGG+AGG | + | chr3_1:44560377-44560396 | Msa0358820:CDS | 50.0% |
| TGAGCTTCTCGATGGGGATA+AGG | + | chr3_1:44560488-44560507 | Msa0358820:CDS | 50.0% | |
| TTGTCACCATCCGACCAATG+TGG | + | chr3_1:44560597-44560616 | Msa0358820:CDS | 50.0% | |
| GAAGAACCACATTGGTCGGA+TGG | - | chr3_1:44560606-44560625 | None:intergenic | 50.0% | |
| TCCGACCAATGTGGTTCTTC+TGG | + | chr3_1:44560606-44560625 | Msa0358820:CDS | 50.0% | |
| CTCGACCAGAAGAACCACAT+TGG | - | chr3_1:44560614-44560633 | None:intergenic | 50.0% | |
| AGCTGACACAGTCAGCATTG+TGG | + | chr3_1:44561074-44561093 | Msa0358820:intron | 50.0% | |
| GCTGAAAAGTGGGGAATTGG+GGG | - | chr3_1:44561291-44561310 | None:intergenic | 50.0% | |
| GGAGGATGTAGCCAAGGATA+TGG | - | chr3_1:44561658-44561677 | None:intergenic | 50.0% | |
| CAGAAGGCAACACTTCACGT+GGG | + | chr3_1:44561835-44561854 | Msa0358820:intron | 50.0% | |
| TTCAGTCTGGCAATGGTTGC+TGG | + | chr3_1:44562036-44562055 | Msa0358820:intron | 50.0% | |
| TACCAACCAAGCTGCCAACT+AGG | + | chr3_1:44562693-44562712 | Msa0358820:intron | 50.0% | |
| ACCAACCAAGCTGCCAACTA+GGG | + | chr3_1:44562694-44562713 | Msa0358820:intron | 50.0% | |
| AATGTCCCTAGTTGGCAGCT+TGG | - | chr3_1:44562702-44562721 | None:intergenic | 50.0% | |
| GGCTAAGACCAACAAATGGG+CGG | + | chr3_1:44562908-44562927 | Msa0358820:intron | 50.0% | |
| GTTTACAGAGGGAGTGAGAG+TGG | + | chr3_1:44562986-44563005 | Msa0358820:intron | 50.0% | |
| TCGAGTCGTTAGAGATAGGG+TGG | - | chr3_1:44564080-44564099 | None:intergenic | 50.0% | |
| ! | GAGGGTTGATCGATGGAGAA+TGG | - | chr3_1:44564103-44564122 | None:intergenic | 50.0% |
| ! | TGGTGAAGAGGGTTGATCGA+TGG | - | chr3_1:44564110-44564129 | None:intergenic | 50.0% |
| ATATGTCACGGTCCCATCCT+AGG | - | chr3_1:44564155-44564174 | None:intergenic | 50.0% | |
| AGACAGCAGCAAGACTTCAC+TGG | + | chr3_1:44565434-44565453 | Msa0358820:intron | 50.0% | |
| CACTGGAGTTGTTGGATCTG+GGG | + | chr3_1:44565451-44565470 | Msa0358820:intron | 50.0% | |
| ! | GAGTAATGGAGGGCATATCC+AGG | - | chr3_1:44565613-44565632 | None:intergenic | 50.0% |
| ! | AGGTCTCAGCGAGTAATGGA+GGG | - | chr3_1:44565623-44565642 | None:intergenic | 50.0% |
| AAGGTCTCAGCGAGTAATGG+AGG | - | chr3_1:44565624-44565643 | None:intergenic | 50.0% | |
| GGCCAAGAGCTTCTTACATG+TGG | + | chr3_1:44565972-44565991 | Msa0358820:CDS | 50.0% | |
| GCTTCTTACATGTGGAGTGG+AGG | + | chr3_1:44565980-44565999 | Msa0358820:CDS | 50.0% | |
| !! | TAGGCGTTGGGATGTCAGTA+CGG | + | chr3_1:44566010-44566029 | Msa0358820:CDS | 50.0% |
| GAAACCATGCACAGGAGATC+AGG | - | chr3_1:44566073-44566092 | None:intergenic | 50.0% | |
| TCCTGTGCATGGTTTCCTTG+TGG | + | chr3_1:44566077-44566096 | Msa0358820:CDS | 50.0% | |
| TCCACAAGGAAACCATGCAC+AGG | - | chr3_1:44566081-44566100 | None:intergenic | 50.0% | |
| GAGAACGCCCCTACAATTCA+TGG | - | chr3_1:44566620-44566639 | None:intergenic | 50.0% | |
| CATATGGCACAGAAGCTCAG+GGG | + | chr3_1:44567000-44567019 | Msa0358820:CDS | 50.0% | |
| TTAACGGCTCCAGAATGACC+GGG | - | chr3_1:44567043-44567062 | None:intergenic | 50.0% | |
| GTTAACGGCTCCAGAATGAC+CGG | - | chr3_1:44567044-44567063 | None:intergenic | 50.0% | |
| ATGACCGTTGCCATTGCTGT+AGG | - | chr3_1:44567173-44567192 | None:intergenic | 50.0% | |
| CTCTACCACCGATCGCTCAT+CGG | + | chr3_1:44559428-44559447 | Msa0358820:five_prime_UTR | 55.0% | |
| ACCGATCGCTCATCGGATTC+CGG | + | chr3_1:44559435-44559454 | Msa0358820:five_prime_UTR | 55.0% | |
| GAATCGGAAACCGCAGATCC+AGG | - | chr3_1:44559517-44559536 | None:intergenic | 55.0% | |
| ! | GGGCTGAGGCGCATTTTTCA+TGG | + | chr3_1:44560044-44560063 | Msa0358820:exon | 55.0% |
| CGTTGTCCCCTTCAGATGGT+AGG | - | chr3_1:44560200-44560219 | None:intergenic | 55.0% | |
| ! | CTCCTCCTCTAGGTTTTCCC+CGG | - | chr3_1:44560310-44560329 | None:intergenic | 55.0% |
| GTATGCCAGACTCCTCCTCT+AGG | - | chr3_1:44560320-44560339 | None:intergenic | 55.0% | |
| ! | GAGGACTCGGTTGAAACTGC+TGG | + | chr3_1:44560647-44560666 | Msa0358820:CDS | 55.0% |
| ! | GACTCGGTTGAAACTGCTGG+AGG | + | chr3_1:44560650-44560669 | Msa0358820:CDS | 55.0% |
| AACAGGGGAGGATGTAGCCA+AGG | - | chr3_1:44561664-44561683 | None:intergenic | 55.0% | |
| AGCACAGATGGAAACAGGGG+AGG | - | chr3_1:44561676-44561695 | None:intergenic | 55.0% | |
| GCAGAAGGCAACACTTCACG+TGG | + | chr3_1:44561834-44561853 | Msa0358820:intron | 55.0% | |
| TTCACGTGGGCCCAAACTCA+TGG | + | chr3_1:44561848-44561867 | Msa0358820:intron | 55.0% | |
| TCCCTAGTTGGCAGCTTGGT+TGG | - | chr3_1:44562698-44562717 | None:intergenic | 55.0% | |
| GGGCGGAATAGAGAGGTTAG+AGG | + | chr3_1:44562925-44562944 | Msa0358820:intron | 55.0% | |
| TTAGAGGAGATGGGCCGATG+TGG | + | chr3_1:44562941-44562960 | Msa0358820:intron | 55.0% | |
| !! | TGGTGATGGAATCTGGCTGC+TGG | + | chr3_1:44565394-44565413 | Msa0358820:intron | 55.0% |
| CTCTTGGCCATTAGGACTCC+AGG | - | chr3_1:44565961-44565980 | None:intergenic | 55.0% | |
| GTGGAGTGGAGGAAGCTGTT+AGG | + | chr3_1:44565991-44566010 | Msa0358820:CDS | 55.0% | |
| TGGAGGAAGCTGTTAGGCGT+TGG | + | chr3_1:44565997-44566016 | Msa0358820:CDS | 55.0% | |
| GGAGGAAGCTGTTAGGCGTT+GGG | + | chr3_1:44565998-44566017 | Msa0358820:CDS | 55.0% | |
| !! | AGGCGTTGGGATGTCAGTAC+GGG | + | chr3_1:44566011-44566030 | Msa0358820:CDS | 55.0% |
| TGCACACGGAAGACGGTATC+TGG | + | chr3_1:44566828-44566847 | Msa0358820:intron | 55.0% | |
| ACACGGAAGACGGTATCTGG+AGG | + | chr3_1:44566831-44566850 | Msa0358820:intron | 55.0% | |
| ! | GACTTGGTAGATGCGTTGCC+CGG | + | chr3_1:44567022-44567041 | Msa0358820:CDS | 55.0% |
| GAGCCGTTAACTGTGTGAGC+TGG | + | chr3_1:44567053-44567072 | Msa0358820:CDS | 55.0% | |
| TCCAGCTAACCCCCACATGT+TGG | + | chr3_1:44567078-44567097 | Msa0358820:CDS | 55.0% | |
| TTGCTGAGGCCAACATGTGG+GGG | - | chr3_1:44567090-44567109 | None:intergenic | 55.0% | |
| CTTGCTGAGGCCAACATGTG+GGG | - | chr3_1:44567091-44567110 | None:intergenic | 55.0% | |
| ! | GCTTGCTGAGGCCAACATGT+GGG | - | chr3_1:44567092-44567111 | None:intergenic | 55.0% |
| ATGACCGGACAGTCCGGATA+TGG | + | chr3_1:44567113-44567132 | Msa0358820:CDS | 55.0% | |
| TGACCGGACAGTCCGGATAT+GGG | + | chr3_1:44567114-44567133 | Msa0358820:CDS | 55.0% | |
| GGAATCCGATGAGCGATCGG+TGG | - | chr3_1:44559436-44559455 | None:intergenic | 60.0% | |
| GCCGGAATCCGATGAGCGAT+CGG | - | chr3_1:44559439-44559458 | None:intergenic | 60.0% | |
| CTCGGCCCCTACCATCTGAA+GGG | + | chr3_1:44560190-44560209 | Msa0358820:CDS | 60.0% | |
| TCGGCCCCTACCATCTGAAG+GGG | + | chr3_1:44560191-44560210 | Msa0358820:CDS | 60.0% | |
| GACCGGGGAAAACCTAGAGG+AGG | + | chr3_1:44560305-44560324 | Msa0358820:CDS | 60.0% | |
| GGGCCGATGTGGCAGTTAGT+TGG | + | chr3_1:44562952-44562971 | Msa0358820:intron | 60.0% | |
| !! | GGTTGGCTTGGTGGTTGGGT+GGG | - | chr3_1:44565582-44565601 | None:intergenic | 60.0% |
| !! | AGGTTGGCTTGGTGGTTGGG+TGG | - | chr3_1:44565583-44565602 | None:intergenic | 60.0% |
| CTGGCCTGATCTCCTGTGCA+TGG | + | chr3_1:44566066-44566085 | Msa0358820:CDS | 60.0% | |
| GCACAGAAGCTCAGGGGACT+TGG | + | chr3_1:44567006-44567025 | Msa0358820:CDS | 60.0% | |
| GATGCGTTGCCCGGTCATTC+TGG | + | chr3_1:44567031-44567050 | Msa0358820:CDS | 60.0% | |
| ! | GCCAACATGTGGGGGTTAGC+TGG | - | chr3_1:44567082-44567101 | None:intergenic | 60.0% |
| ! | CGCTTGCTGAGGCCAACATG+TGG | - | chr3_1:44567093-44567112 | None:intergenic | 60.0% |
| TGGCCTCAGCAAGCGATGAC+CGG | + | chr3_1:44567098-44567117 | Msa0358820:CDS | 60.0% | |
| ! | TGTCCGGTCATCGCTTGCTG+AGG | - | chr3_1:44567104-44567123 | None:intergenic | 60.0% |
| CAAGCGATGACCGGACAGTC+CGG | + | chr3_1:44567107-44567126 | Msa0358820:CDS | 60.0% | |
| GACCGGACAGTCCGGATATG+GGG | + | chr3_1:44567115-44567134 | Msa0358820:CDS | 60.0% | |
| AGCCCCATATCCGGACTGTC+CGG | - | chr3_1:44567120-44567139 | None:intergenic | 60.0% | |
| GCTCGGCCCCTACCATCTGA+AGG | + | chr3_1:44560189-44560208 | Msa0358820:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 44559371 | 44567386 | 44559371 | ID=Msa0358820;Name=Msa0358820 |
| chr3_1 | mRNA | 44559371 | 44567386 | 44559371 | ID=Msa0358820-mRNA-1;Parent=Msa0358820;Name=Msa0358820-mRNA-1;_AED=0.03;_eAED=0.03;_QI=214|1|1|1|0.75|0.6|5|170|581 |
| chr3_1 | exon | 44559371 | 44559488 | 44559371 | ID=Msa0358820-mRNA-1:exon:7890;Parent=Msa0358820-mRNA-1 |
| chr3_1 | exon | 44559967 | 44560854 | 44559967 | ID=Msa0358820-mRNA-1:exon:7891;Parent=Msa0358820-mRNA-1 |
| chr3_1 | exon | 44564569 | 44564670 | 44564569 | ID=Msa0358820-mRNA-1:exon:7892;Parent=Msa0358820-mRNA-1 |
| chr3_1 | exon | 44565888 | 44566517 | 44565888 | ID=Msa0358820-mRNA-1:exon:7893;Parent=Msa0358820-mRNA-1 |
| chr3_1 | exon | 44566995 | 44567386 | 44566995 | ID=Msa0358820-mRNA-1:exon:7894;Parent=Msa0358820-mRNA-1 |
| chr3_1 | five_prime_UTR | 44559371 | 44559488 | 44559371 | ID=Msa0358820-mRNA-1:five_prime_utr;Parent=Msa0358820-mRNA-1 |
| chr3_1 | five_prime_UTR | 44559967 | 44560062 | 44559967 | ID=Msa0358820-mRNA-1:five_prime_utr;Parent=Msa0358820-mRNA-1 |
| chr3_1 | CDS | 44560063 | 44560854 | 44560063 | ID=Msa0358820-mRNA-1:cds;Parent=Msa0358820-mRNA-1 |
| chr3_1 | CDS | 44564569 | 44564670 | 44564569 | ID=Msa0358820-mRNA-1:cds;Parent=Msa0358820-mRNA-1 |
| chr3_1 | CDS | 44565888 | 44566517 | 44565888 | ID=Msa0358820-mRNA-1:cds;Parent=Msa0358820-mRNA-1 |
| chr3_1 | CDS | 44566995 | 44567216 | 44566995 | ID=Msa0358820-mRNA-1:cds;Parent=Msa0358820-mRNA-1 |
| chr3_1 | three_prime_UTR | 44567217 | 44567386 | 44567217 | ID=Msa0358820-mRNA-1:three_prime_utr;Parent=Msa0358820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
