Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0359500 | XP_013459731.1 | 98.113 | 530 | 10 | 0 | 1 | 530 | 1 | 530 | 0.0 | 1081 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0359500 | sp|Q8L4B0|GAUTF_ARATH | 59.450 | 545 | 201 | 7 | 1 | 530 | 1 | 540 | 0.0 | 638 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0359500 | A0A072UVY1 | 98.113 | 530 | 10 | 0 | 1 | 530 | 1 | 530 | 0.0 | 1081 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0359500 | Msa0499430 | 0.955826 | 1.235410e-113 | -8.615850e-47 |
| Msa0359500 | Msa0961360 | 0.808088 | 3.678249e-50 | -8.615850e-47 |
| Msa0359500 | Msa1155900 | 0.800631 | 1.316175e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0359500 | MtrunA17_Chr3g0097091 | 98.113 | 530 | 10 | 0 | 1 | 530 | 1 | 530 | 0.0 | 1081 |
| Msa0359500 | MtrunA17_Chr7g0218571 | 46.337 | 505 | 252 | 5 | 40 | 528 | 34 | 535 | 7.92e-157 | 457 |
| Msa0359500 | MtrunA17_Chr6g0454101 | 46.215 | 502 | 251 | 5 | 44 | 529 | 33 | 531 | 2.35e-144 | 426 |
| Msa0359500 | MtrunA17_Chr2g0319311 | 41.499 | 547 | 284 | 8 | 1 | 528 | 10 | 539 | 3.53e-136 | 405 |
| Msa0359500 | MtrunA17_Chr4g0076011 | 46.517 | 402 | 191 | 4 | 147 | 528 | 74 | 471 | 2.15e-117 | 355 |
| Msa0359500 | MtrunA17_Chr2g0290961 | 38.182 | 440 | 249 | 10 | 96 | 528 | 242 | 665 | 5.85e-97 | 308 |
| Msa0359500 | MtrunA17_Chr2g0283461 | 37.717 | 403 | 236 | 6 | 126 | 526 | 141 | 530 | 7.11e-95 | 298 |
| Msa0359500 | MtrunA17_Chr8g0351091 | 38.404 | 401 | 223 | 7 | 135 | 528 | 227 | 610 | 3.27e-94 | 299 |
| Msa0359500 | MtrunA17_Chr8g0383241 | 37.671 | 438 | 251 | 11 | 96 | 528 | 69 | 489 | 1.09e-93 | 294 |
| Msa0359500 | MtrunA17_Chr4g0061711 | 36.952 | 433 | 247 | 12 | 102 | 526 | 118 | 532 | 9.10e-89 | 283 |
| Msa0359500 | MtrunA17_Chr7g0246371 | 38.393 | 448 | 239 | 12 | 96 | 528 | 237 | 662 | 1.13e-88 | 286 |
| Msa0359500 | MtrunA17_Chr3g0138381 | 38.579 | 394 | 218 | 7 | 142 | 528 | 287 | 663 | 1.99e-88 | 285 |
| Msa0359500 | MtrunA17_Chr2g0308241 | 36.343 | 432 | 255 | 10 | 102 | 528 | 118 | 534 | 2.53e-85 | 273 |
| Msa0359500 | MtrunA17_Chr7g0235161 | 38.520 | 392 | 218 | 7 | 142 | 526 | 181 | 556 | 8.43e-83 | 268 |
| Msa0359500 | MtrunA17_Chr6g0456071 | 37.500 | 392 | 221 | 10 | 142 | 526 | 177 | 551 | 3.53e-78 | 255 |
| Msa0359500 | MtrunA17_Chr2g0277591 | 34.158 | 404 | 225 | 7 | 126 | 526 | 141 | 506 | 4.80e-78 | 254 |
| Msa0359500 | MtrunA17_Chr7g0260711 | 33.249 | 394 | 229 | 5 | 135 | 528 | 293 | 652 | 5.47e-72 | 241 |
| Msa0359500 | MtrunA17_Chr1g0184751 | 31.969 | 391 | 234 | 5 | 138 | 528 | 239 | 597 | 3.80e-62 | 214 |
| Msa0359500 | MtrunA17_Chr7g0245621 | 30.155 | 388 | 244 | 7 | 142 | 528 | 282 | 643 | 4.51e-52 | 187 |
| Msa0359500 | MtrunA17_Chr4g0076331 | 34.597 | 211 | 94 | 6 | 323 | 528 | 1 | 172 | 1.06e-29 | 114 |
| Msa0359500 | MtrunA17_Chr4g0066331 | 29.319 | 191 | 109 | 7 | 324 | 503 | 145 | 320 | 8.06e-22 | 97.1 |
| Msa0359500 | MtrunA17_Chr3g0127611 | 27.778 | 216 | 128 | 8 | 300 | 503 | 115 | 314 | 1.34e-19 | 90.1 |
| Msa0359500 | MtrunA17_Chr7g0259321 | 26.000 | 200 | 121 | 7 | 315 | 503 | 142 | 325 | 7.53e-18 | 85.1 |
| Msa0359500 | MtrunA17_Chr7g0269751 | 26.415 | 212 | 128 | 8 | 300 | 500 | 136 | 330 | 8.03e-17 | 82.0 |
| Msa0359500 | MtrunA17_Chr5g0414981 | 24.839 | 310 | 176 | 12 | 208 | 503 | 89 | 355 | 3.02e-15 | 78.2 |
| Msa0359500 | MtrunA17_Chr1g0154521 | 21.927 | 301 | 179 | 9 | 214 | 503 | 86 | 341 | 4.90e-14 | 73.9 |
| Msa0359500 | MtrunA17_Chr1g0196511 | 27.749 | 191 | 111 | 7 | 324 | 503 | 154 | 328 | 7.19e-14 | 73.2 |
| Msa0359500 | MtrunA17_Chr8g0373671 | 26.531 | 196 | 110 | 9 | 324 | 503 | 142 | 319 | 7.90e-14 | 72.8 |
| Msa0359500 | MtrunA17_Chr6g0451981 | 28.272 | 191 | 125 | 6 | 315 | 500 | 156 | 339 | 9.91e-14 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0359500 | AT3G58790.1 | 59.450 | 545 | 201 | 7 | 1 | 530 | 1 | 540 | 0.0 | 638 |
| Msa0359500 | AT3G58790.2 | 62.808 | 406 | 141 | 2 | 133 | 530 | 5 | 408 | 0.0 | 541 |
| Msa0359500 | AT5G15470.1 | 46.047 | 506 | 254 | 5 | 40 | 529 | 29 | 531 | 1.62e-151 | 444 |
| Msa0359500 | AT3G01040.2 | 45.850 | 506 | 255 | 5 | 40 | 529 | 29 | 531 | 8.16e-150 | 440 |
| Msa0359500 | AT3G01040.3 | 45.850 | 506 | 255 | 5 | 40 | 529 | 29 | 531 | 8.16e-150 | 440 |
| Msa0359500 | AT5G54690.1 | 41.606 | 548 | 284 | 8 | 1 | 528 | 1 | 532 | 1.97e-133 | 398 |
| Msa0359500 | AT3G01040.1 | 43.145 | 496 | 250 | 5 | 40 | 529 | 29 | 498 | 1.36e-131 | 392 |
| Msa0359500 | AT5G47780.1 | 40.000 | 405 | 225 | 6 | 126 | 528 | 226 | 614 | 1.93e-100 | 316 |
| Msa0359500 | AT3G61130.1 | 38.025 | 405 | 234 | 5 | 126 | 528 | 282 | 671 | 1.27e-95 | 305 |
| Msa0359500 | AT4G38270.2 | 39.055 | 402 | 223 | 7 | 135 | 528 | 287 | 674 | 1.07e-92 | 297 |
| Msa0359500 | AT4G38270.1 | 39.055 | 402 | 223 | 7 | 135 | 528 | 291 | 678 | 1.36e-92 | 297 |
| Msa0359500 | AT1G18580.1 | 37.845 | 399 | 224 | 8 | 135 | 526 | 153 | 534 | 8.89e-91 | 288 |
| Msa0359500 | AT3G25140.1 | 38.889 | 396 | 211 | 7 | 142 | 526 | 180 | 555 | 2.07e-90 | 288 |
| Msa0359500 | AT2G20810.1 | 37.531 | 405 | 236 | 7 | 126 | 526 | 142 | 533 | 9.28e-82 | 265 |
| Msa0359500 | AT2G46480.3 | 37.755 | 392 | 226 | 6 | 142 | 529 | 162 | 539 | 1.44e-79 | 259 |
| Msa0359500 | AT2G46480.4 | 37.755 | 392 | 226 | 6 | 142 | 529 | 175 | 552 | 2.86e-79 | 259 |
| Msa0359500 | AT3G02350.1 | 38.974 | 390 | 218 | 7 | 142 | 526 | 183 | 557 | 1.42e-75 | 249 |
| Msa0359500 | AT2G46480.2 | 35.204 | 392 | 211 | 6 | 142 | 529 | 162 | 514 | 4.25e-71 | 236 |
| Msa0359500 | AT2G46480.1 | 35.204 | 392 | 211 | 6 | 142 | 529 | 175 | 527 | 5.72e-71 | 236 |
| Msa0359500 | AT2G30575.1 | 35.025 | 394 | 217 | 9 | 138 | 528 | 251 | 608 | 1.24e-70 | 237 |
| Msa0359500 | AT1G06780.2 | 32.029 | 409 | 238 | 7 | 124 | 528 | 228 | 600 | 6.79e-66 | 224 |
| Msa0359500 | AT1G06780.1 | 32.029 | 409 | 238 | 7 | 124 | 528 | 215 | 587 | 7.68e-66 | 224 |
| Msa0359500 | AT2G38650.2 | 32.653 | 392 | 224 | 8 | 142 | 528 | 261 | 617 | 4.41e-55 | 196 |
| Msa0359500 | AT2G38650.1 | 32.653 | 392 | 224 | 8 | 142 | 528 | 261 | 617 | 4.41e-55 | 196 |
| Msa0359500 | AT2G38650.3 | 33.333 | 297 | 162 | 6 | 142 | 433 | 261 | 526 | 5.69e-35 | 138 |
| Msa0359500 | AT3G62660.1 | 24.920 | 313 | 173 | 13 | 204 | 503 | 75 | 338 | 3.32e-19 | 89.7 |
| Msa0359500 | AT4G02130.3 | 25.159 | 314 | 170 | 13 | 206 | 503 | 60 | 324 | 4.18e-19 | 89.4 |
| Msa0359500 | AT4G02130.1 | 25.159 | 314 | 170 | 13 | 206 | 503 | 60 | 324 | 4.18e-19 | 89.4 |
| Msa0359500 | AT4G02130.2 | 25.159 | 314 | 170 | 13 | 206 | 503 | 60 | 324 | 4.18e-19 | 89.4 |
| Msa0359500 | AT3G06260.1 | 25.234 | 214 | 132 | 8 | 302 | 503 | 127 | 324 | 8.95e-17 | 82.4 |
| Msa0359500 | AT1G02720.1 | 23.899 | 318 | 173 | 13 | 204 | 503 | 73 | 339 | 2.50e-16 | 81.3 |
| Msa0359500 | AT1G02720.2 | 23.899 | 318 | 173 | 13 | 204 | 503 | 73 | 339 | 2.50e-16 | 81.3 |
| Msa0359500 | AT1G70090.1 | 25.909 | 220 | 135 | 8 | 296 | 503 | 141 | 344 | 6.42e-16 | 80.1 |
| Msa0359500 | AT1G70090.2 | 25.909 | 220 | 135 | 8 | 296 | 503 | 141 | 344 | 6.42e-16 | 80.1 |
| Msa0359500 | AT3G28340.1 | 24.333 | 300 | 188 | 9 | 208 | 503 | 67 | 331 | 6.83e-16 | 79.7 |
| Msa0359500 | AT1G24170.1 | 22.508 | 311 | 184 | 11 | 207 | 503 | 80 | 347 | 1.79e-14 | 75.9 |
| Msa0359500 | AT1G13250.1 | 23.323 | 313 | 173 | 11 | 208 | 503 | 56 | 318 | 4.12e-14 | 74.3 |
Find 146 sgRNAs with CRISPR-Local
Find 442 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATGCTTGTGACTGATTT+AGG | 0.165480 | 3_1:+47112747 | Msa0359500:CDS |
| TGGAAACTAATCACTTAATT+TGG | 0.212659 | 3_1:+47111548 | Msa0359500:CDS |
| GCAAAACCATGGCTTGAAAT+TGG | 0.226164 | 3_1:+47112843 | Msa0359500:CDS |
| TCCCAGAGTATCGAAGTTTA+TGG | 0.233325 | 3_1:+47112868 | Msa0359500:CDS |
| CCTTCCTTGATTGCATTTGA+TGG | 0.254254 | 3_1:+47112702 | Msa0359500:CDS |
| TTGTGGGACGTAGATCTTAA+TGG | 0.263561 | 3_1:+47111859 | Msa0359500:CDS |
| ATAGTAATTTGAACGCTTTA+CGG | 0.297616 | 3_1:+47111605 | Msa0359500:CDS |
| ATACGGAGATGTAGAATTAT+AGG | 0.310252 | 3_1:+47112921 | Msa0359500:CDS |
| GATACATAAACTAAATTTGA+TGG | 0.325481 | 3_1:-47113323 | None:intergenic |
| TTCACTCCGGACGGTGCTTC+CGG | 0.326076 | 3_1:+47105804 | Msa0359500:CDS |
| TGAATTCGCTTCTCGCCTTT+CGG | 0.326659 | 3_1:+47111276 | Msa0359500:CDS |
| AACAGCAGGAGTCAGTTTAT+TGG | 0.339669 | 3_1:+47111149 | Msa0359500:CDS |
| TTACAAGTTTCAACCATTTC+CGG | 0.340859 | 3_1:-47112074 | None:intergenic |
| ATCAGCTGTTGTTGAAGTTA+AGG | 0.348935 | 3_1:+47111471 | Msa0359500:CDS |
| TAGTTCATGTATTTACTTCC+AGG | 0.352997 | 3_1:-47111931 | None:intergenic |
| ATGTTCAATTATATTTATCT+TGG | 0.355650 | 3_1:+47113459 | Msa0359500:three_prime_UTR |
| GACAAAGACAGTGTAAACTA+TGG | 0.359297 | 3_1:-47111195 | None:intergenic |
| TTTCTTCAGACCAATCATAT+TGG | 0.366193 | 3_1:-47111501 | None:intergenic |
| TACGGAGATGTAGAATTATA+GGG | 0.369509 | 3_1:+47112922 | Msa0359500:CDS |
| CCCAGAGTATCGAAGTTTAT+GGG | 0.373450 | 3_1:+47112869 | Msa0359500:CDS |
| AAATCAGTCACAAGCATTGA+TGG | 0.380994 | 3_1:-47112744 | None:intergenic |
| ACTTCTCTAATAAGTTTATA+CGG | 0.382222 | 3_1:+47112904 | Msa0359500:CDS |
| ACTCTCCTTGCTAATTTCTT+CGG | 0.388314 | 3_1:-47112784 | None:intergenic |
| GAAAGGCGAGAAGCGAATTC+AGG | 0.388871 | 3_1:-47111274 | None:intergenic |
| TTGATACCGTGTTGGATTAG+AGG | 0.391376 | 3_1:+47112993 | Msa0359500:three_prime_UTR |
| TCAGCTGTTGTTGAAGTTAA+GGG | 0.393864 | 3_1:+47111472 | Msa0359500:CDS |
| AACAGCTGATTCAACAGAAT+TGG | 0.397737 | 3_1:-47111458 | None:intergenic |
| AATGAACAAAATTGTATTTG+TGG | 0.398873 | 3_1:-47105456 | None:intergenic |
| AAATTTATATACCATGGCTT+TGG | 0.402656 | 3_1:-47110123 | None:intergenic |
| TGAGCTAACCAGAGCGCTAA+TGG | 0.406725 | 3_1:+47109995 | Msa0359500:CDS |
| CCCCATAAACTTCGATACTC+TGG | 0.408924 | 3_1:-47112870 | None:intergenic |
| AGTCTTGTAAGTACCTTTGT+TGG | 0.410763 | 3_1:+47113298 | Msa0359500:three_prime_UTR |
| GTTTCACAGAACCTCAAGTC+TGG | 0.411046 | 3_1:+47112648 | Msa0359500:intron |
| GAACAATGTGGGTGGCTCTA+TGG | 0.411219 | 3_1:+47111997 | Msa0359500:CDS |
| GATAGTAGTTAATGGAATCA+AGG | 0.418731 | 3_1:+47105648 | Msa0359500:five_prime_UTR |
| CTTCCGGTGGTGTTAGTGCT+TGG | 0.419201 | 3_1:+47105820 | Msa0359500:CDS |
| TAACAGAGACCTACCGGAAA+TGG | 0.427059 | 3_1:+47112061 | Msa0359500:CDS |
| ACATGACATATCTTCTTTGT+GGG | 0.432071 | 3_1:+47111843 | Msa0359500:CDS |
| TCTTGAAAGCAAAAGCTTTG+AGG | 0.433058 | 3_1:-47110100 | None:intergenic |
| AGGGATTGCACCAATATGAT+TGG | 0.438241 | 3_1:+47111491 | Msa0359500:CDS |
| GTGGTTCAGTATTCAAGTCT+TGG | 0.440559 | 3_1:+47111890 | Msa0359500:CDS |
| ATTTGCTTCCATTAGCGCTC+TGG | 0.443976 | 3_1:-47110003 | None:intergenic |
| CGGCAAGGACATTATCAGTT+AGG | 0.448076 | 3_1:-47111324 | None:intergenic |
| ACAAGCATTGATGGATCTAT+AGG | 0.448485 | 3_1:-47112735 | None:intergenic |
| AACATGACATATCTTCTTTG+TGG | 0.449268 | 3_1:+47111842 | Msa0359500:CDS |
| ACACTGTCTTTGTCTTAAGT+TGG | 0.450596 | 3_1:+47111204 | Msa0359500:CDS |
| AGAACTAGGTGATGAAGAGT+AGG | 0.452998 | 3_1:-47111301 | None:intergenic |
| CCGACTGTTAGTGGTTCTTC+CGG | 0.453251 | 3_1:+47105772 | Msa0359500:CDS |
| TTCCGGTGGTGTTAGTGCTT+GGG | 0.465325 | 3_1:+47105821 | Msa0359500:CDS |
| CTTATGCTTCAATGCATGCT+TGG | 0.468781 | 3_1:+47111428 | Msa0359500:CDS |
| CATTATCAGTTAGGAGAACT+AGG | 0.475117 | 3_1:-47111315 | None:intergenic |
| GGGACAGCACTGTGGAATCC+AGG | 0.479503 | 3_1:+47112669 | Msa0359500:CDS |
| AAGGAAGGTGGAAGAACTCC+TGG | 0.480547 | 3_1:-47112687 | None:intergenic |
| GCACCGTCCGGAGTGAAATC+CGG | 0.484080 | 3_1:-47105798 | None:intergenic |
| AAGGATACAACGACGACGGC+GGG | 0.486134 | 3_1:+47105739 | Msa0359500:CDS |
| TGTGAAGACAAGTGCTGCCC+TGG | 0.497943 | 3_1:+47111913 | Msa0359500:CDS |
| TTGCAGAATGTGCTGGGTGG+AGG | 0.498368 | 3_1:+47106531 | Msa0359500:intron |
| TGCTGGTGTTAAAGAGATGC+TGG | 0.500875 | 3_1:+47111528 | Msa0359500:CDS |
| CTGCAGATACTGCTTCTAGT+AGG | 0.502823 | 3_1:-47113128 | None:intergenic |
| AGTAACAATATCAAACGGTA+AGG | 0.504916 | 3_1:+47105708 | Msa0359500:CDS |
| GGAGAGTCTAGAAGCTGCTT+CGG | 0.505777 | 3_1:+47112800 | Msa0359500:CDS |
| GGAGTAAGTCCGACTGTTAG+TGG | 0.507681 | 3_1:+47105763 | Msa0359500:CDS |
| CCCATAAACTTCGATACTCT+GGG | 0.507749 | 3_1:-47112869 | None:intergenic |
| GGGAAACCAATTTCAAGCCA+TGG | 0.508346 | 3_1:-47112849 | None:intergenic |
| TGATACCGTGTTGGATTAGA+GGG | 0.511229 | 3_1:+47112994 | Msa0359500:three_prime_UTR |
| GGTAATATTAATGATAATGA+AGG | 0.512465 | 3_1:+47110029 | Msa0359500:CDS |
| ATGACTGTTGCAGAATGTGC+TGG | 0.512673 | 3_1:+47106524 | Msa0359500:intron |
| ACAAAGACAGTGTAAACTAT+GGG | 0.516741 | 3_1:-47111194 | None:intergenic |
| TTGGCCATCAAATGCAATCA+AGG | 0.517676 | 3_1:-47112706 | None:intergenic |
| AAGCGAATTCAGGAGGAGGC+AGG | 0.518296 | 3_1:-47111264 | None:intergenic |
| AGCTGATTCAACAGAATTGG+TGG | 0.518950 | 3_1:-47111455 | None:intergenic |
| CGGGCATATAAATGCGGAGT+TGG | 0.519013 | 3_1:-47111651 | None:intergenic |
| TTAGTGGTTCTTCCGGTCGC+CGG | 0.519889 | 3_1:+47105779 | Msa0359500:CDS |
| GCAGTATCTGCAGTTAAGAA+AGG | 0.525665 | 3_1:+47113138 | Msa0359500:three_prime_UTR |
| CCGGAGTGAAATCCGGCGAC+CGG | 0.533686 | 3_1:-47105791 | None:intergenic |
| ACACCACCGGAAGCACCGTC+CGG | 0.539068 | 3_1:-47105810 | None:intergenic |
| AAACGGTAAGGGATCGGCGA+AGG | 0.543149 | 3_1:+47105720 | Msa0359500:CDS |
| GAATTTAGTTCGAGATCTGA+AGG | 0.543201 | 3_1:-47105594 | None:intergenic |
| TTGCATCATTGATACCGTGT+TGG | 0.544456 | 3_1:+47112985 | Msa0359500:three_prime_UTR |
| TGCTTTCAAGACCAAAGCCA+TGG | 0.552072 | 3_1:+47110112 | Msa0359500:CDS |
| GCTTCGGTTATCCATTTCAG+TGG | 0.552617 | 3_1:+47112816 | Msa0359500:CDS |
| AGTTCATGTATTTACTTCCA+GGG | 0.552622 | 3_1:-47111930 | None:intergenic |
| CAGTGGAGCTGACACGTCAC+TGG | 0.553124 | 3_1:+47106559 | Msa0359500:CDS |
| AAATTTGATGGTTCCAACAA+AGG | 0.557588 | 3_1:-47113311 | None:intergenic |
| AAACGAGTAACAATATCAAA+CGG | 0.560338 | 3_1:+47105703 | Msa0359500:CDS |
| GCGCTAATGGAAGCAAATGA+TGG | 0.561227 | 3_1:+47110008 | Msa0359500:CDS |
| ATGGATCTATAGGATGTACT+TGG | 0.564930 | 3_1:-47112725 | None:intergenic |
| GTTTCGACATTTCAATGAGA+CGG | 0.565348 | 3_1:+47113224 | Msa0359500:three_prime_UTR |
| AGTTCGAGATCTGAAGGTGA+AGG | 0.566720 | 3_1:-47105588 | None:intergenic |
| GAAAGAGAGAAGAGAGTGTG+AGG | 0.566791 | 3_1:-47105494 | None:intergenic |
| AATATCAAACGGTAAGGGAT+CGG | 0.573049 | 3_1:+47105714 | Msa0359500:CDS |
| ACAGTGCTGTCCCAGACTTG+AGG | 0.575252 | 3_1:-47112659 | None:intergenic |
| GCTTCTAGTAGGATACTGCT+TGG | 0.577540 | 3_1:-47113117 | None:intergenic |
| GCAATCTTAATGAATATTTG+AGG | 0.587237 | 3_1:-47112966 | None:intergenic |
| GAAGGATACAACGACGACGG+CGG | 0.588046 | 3_1:+47105738 | Msa0359500:CDS |
| ATGTATTAGATCTTGATGCT+TGG | 0.588082 | 3_1:+47112025 | Msa0359500:CDS |
| CGAGAAGCGAATTCAGGAGG+AGG | 0.590483 | 3_1:-47111268 | None:intergenic |
| ATCTTAATGAATATTTGAGG+TGG | 0.590948 | 3_1:-47112963 | None:intergenic |
| CAATGAACTTGTGAAAGAGA+TGG | 0.591189 | 3_1:+47110064 | Msa0359500:CDS |
| GGAGTTGGTTCATCAAAGAA+AGG | 0.592445 | 3_1:-47111636 | None:intergenic |
| TTTCACAGAACCTCAAGTCT+GGG | 0.593577 | 3_1:+47112649 | Msa0359500:intron |
| CCGGTCGCCGGATTTCACTC+CGG | 0.594389 | 3_1:+47105791 | Msa0359500:CDS |
| CCAGAGTATCGAAGTTTATG+GGG | 0.594965 | 3_1:+47112870 | Msa0359500:CDS |
| CCATCAAATGCAATCAAGGA+AGG | 0.595079 | 3_1:-47112702 | None:intergenic |
| CAAACATAACAGAGACCTAC+CGG | 0.596268 | 3_1:+47112055 | Msa0359500:CDS |
| GAACTAGGTGATGAAGAGTA+GGG | 0.597651 | 3_1:-47111300 | None:intergenic |
| AGTTTCGACGGTGAACAATG+TGG | 0.598991 | 3_1:+47111985 | Msa0359500:CDS |
| ACTCCGGACGGTGCTTCCGG+TGG | 0.600790 | 3_1:+47105807 | Msa0359500:CDS |
| ACATATTCAGCTATCACAGA+TGG | 0.602042 | 3_1:+47111105 | Msa0359500:intron |
| CTACAACAACAGAGGCGGCA+AGG | 0.605369 | 3_1:-47111339 | None:intergenic |
| ATCCCAAGCACTAACACCAC+CGG | 0.605798 | 3_1:-47105823 | None:intergenic |
| TCGCCGGATTTCACTCCGGA+CGG | 0.606898 | 3_1:+47105795 | Msa0359500:CDS |
| CTCATATCATCGAGTTTCGA+CGG | 0.608121 | 3_1:+47111973 | Msa0359500:CDS |
| TCAAATGCAATCAAGGAAGG+TGG | 0.610825 | 3_1:-47112699 | None:intergenic |
| GATACAACGACGACGGCGGG+AGG | 0.613310 | 3_1:+47105742 | Msa0359500:CDS |
| TATATATATGATTATGAACA+TGG | 0.615246 | 3_1:-47113077 | None:intergenic |
| AAGTTTCAACCATTTCCGGT+AGG | 0.619038 | 3_1:-47112070 | None:intergenic |
| GATGAAGAGTAGGGTCCGAA+AGG | 0.619172 | 3_1:-47111291 | None:intergenic |
| TCAGTGGCCCTGCAAAACCA+TGG | 0.619976 | 3_1:+47112832 | Msa0359500:CDS |
| GTTTCGACGGTGAACAATGT+GGG | 0.622090 | 3_1:+47111986 | Msa0359500:CDS |
| GATCTTAATGGCAAAGTCAG+TGG | 0.623090 | 3_1:+47111871 | Msa0359500:CDS |
| AGAATATGCTGTAAATGCCA+TGG | 0.625638 | 3_1:+47111231 | Msa0359500:CDS |
| TGGTCTGAAGAAATGAATGC+TGG | 0.626137 | 3_1:+47111511 | Msa0359500:CDS |
| GGTGCAAACAGCAAAACAGC+AGG | 0.626377 | 3_1:+47111135 | Msa0359500:CDS |
| AGGCAGGCGAGATCGAGCCA+TGG | 0.627139 | 3_1:-47111248 | None:intergenic |
| TTCATCAAAGAAAGGCTGCT+AGG | 0.629361 | 3_1:-47111628 | None:intergenic |
| GTAACAATATCAAACGGTAA+GGG | 0.634534 | 3_1:+47105709 | Msa0359500:CDS |
| AGGCGAGAAGCGAATTCAGG+AGG | 0.636030 | 3_1:-47111271 | None:intergenic |
| TGACTGTTGCAGAATGTGCT+GGG | 0.636790 | 3_1:+47106525 | Msa0359500:intron |
| ACGTATGAATCAGAGACTGA+AGG | 0.647107 | 3_1:-47113029 | None:intergenic |
| GGAGGCTACAACAACAGAGG+CGG | 0.664388 | 3_1:-47111344 | None:intergenic |
| TATTGGCATCTAGCATCACA+TGG | 0.669757 | 3_1:+47111166 | Msa0359500:CDS |
| TTACCTCGGGCATATAAATG+CGG | 0.671819 | 3_1:-47111657 | None:intergenic |
| TAATTCCGAAGAAATTAGCA+AGG | 0.672624 | 3_1:+47112779 | Msa0359500:CDS |
| TCGAAACTCGATGATATGAG+AGG | 0.672946 | 3_1:-47111970 | None:intergenic |
| TGAGACGGTTATAAGACACT+AGG | 0.674151 | 3_1:+47113239 | Msa0359500:three_prime_UTR |
| CCGGAAGAACCACTAACAGT+CGG | 0.676034 | 3_1:-47105772 | None:intergenic |
| GGCGAAGGATACAACGACGA+CGG | 0.681059 | 3_1:+47105735 | Msa0359500:CDS |
| GCTATCACAGATGGAACACA+AGG | 0.685282 | 3_1:+47111114 | Msa0359500:intron |
| TCAAGTCTGGGACAGCACTG+TGG | 0.688056 | 3_1:+47112661 | Msa0359500:CDS |
| CAAAGACAGTGTAAACTATG+GGG | 0.690274 | 3_1:-47111193 | None:intergenic |
| TCGACGGTGAACAATGTGGG+TGG | 0.692704 | 3_1:+47111989 | Msa0359500:CDS |
| TTCTTCCCTCTAATCCAACA+CGG | 0.697844 | 3_1:-47112999 | None:intergenic |
| CTGTTGCAGAATGTGCTGGG+TGG | 0.708910 | 3_1:+47106528 | Msa0359500:intron |
| ACTCCGCATTTATATGCCCG+AGG | 0.710410 | 3_1:+47111654 | Msa0359500:CDS |
| CGTGGAGGCTACAACAACAG+AGG | 0.713906 | 3_1:-47111347 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTTTTATTTAATATTTT+GGG | - | chr3_1:47106405-47106424 | None:intergenic | 0.0% |
| !!! | AATATTTTTATTTAATATTT+TGG | - | chr3_1:47106406-47106425 | None:intergenic | 0.0% |
| !!! | AAATAATTTCATTTCTTTTT+AGG | + | chr3_1:47106290-47106309 | Msa0359500:intron | 10.0% |
| !! | AATATTTGTCAAAAAATTTA+AGG | + | chr3_1:47106420-47106439 | Msa0359500:intron | 10.0% |
| !!! | AAATCTTTTGATTTTTAAAA+AGG | + | chr3_1:47107516-47107535 | Msa0359500:intron | 10.0% |
| !!! | TAAATTTTTTTTGTAGTTTT+TGG | - | chr3_1:47107616-47107635 | None:intergenic | 10.0% |
| !! | TAAAAACACTTAAAAAAAAT+AGG | - | chr3_1:47107693-47107712 | None:intergenic | 10.0% |
| !! | AATGTAAAAAATATTTACAT+TGG | + | chr3_1:47108455-47108474 | Msa0359500:intron | 10.0% |
| !! | AACTAAATTAAAGATATAAT+AGG | - | chr3_1:47108650-47108669 | None:intergenic | 10.0% |
| !! | TTTGTTAGATTAATTAATAT+TGG | + | chr3_1:47108979-47108998 | Msa0359500:intron | 10.0% |
| !! | TTGTTAGATTAATTAATATT+GGG | + | chr3_1:47108980-47108999 | Msa0359500:intron | 10.0% |
| !! | TTTAATTAAAATATACAAGT+TGG | - | chr3_1:47109915-47109934 | None:intergenic | 10.0% |
| !!! | GTATATAAATTTTTTACTTT+TGG | + | chr3_1:47110134-47110153 | Msa0359500:intron | 10.0% |
| !! | AATTATGAAAAAATGCAAAA+AGG | - | chr3_1:47106003-47106022 | None:intergenic | 15.0% |
| !!! | TTTTGCATTTTTTCATAATT+TGG | + | chr3_1:47106003-47106022 | Msa0359500:intron | 15.0% |
| !!! | ACTTTTTTAAGATAAATGAA+TGG | - | chr3_1:47106239-47106258 | None:intergenic | 15.0% |
| !!! | ATTTAAGGAAAAAGATTTTA+TGG | + | chr3_1:47106435-47106454 | Msa0359500:intron | 15.0% |
| !!! | TTTATGGAATTTTATGAAAT+AGG | + | chr3_1:47106451-47106470 | Msa0359500:intron | 15.0% |
| !! | ATAATAATACAATGTCAAAT+TGG | + | chr3_1:47107038-47107057 | Msa0359500:intron | 15.0% |
| !!! | TTAATTTCGAGATATTTTTT+TGG | + | chr3_1:47107305-47107324 | Msa0359500:intron | 15.0% |
| !!! | ATATTTTTTTGGCTAAAATA+TGG | + | chr3_1:47107316-47107335 | Msa0359500:intron | 15.0% |
| !!! | AACAACAAAAAAATTTTACA+GGG | - | chr3_1:47107380-47107399 | None:intergenic | 15.0% |
| !!! | AAACAACAAAAAAATTTTAC+AGG | - | chr3_1:47107381-47107400 | None:intergenic | 15.0% |
| !! | AACTACAAAAAAAATTTACA+TGG | + | chr3_1:47107618-47107637 | Msa0359500:intron | 15.0% |
| !! | AAAAAAAATAGGCTAAAATA+TGG | - | chr3_1:47107682-47107701 | None:intergenic | 15.0% |
| !! | TGTGAATTTAATGATAAATA+AGG | - | chr3_1:47107878-47107897 | None:intergenic | 15.0% |
| !! | ATAACTACTTTAATAGTTTA+TGG | + | chr3_1:47107916-47107935 | Msa0359500:intron | 15.0% |
| !!! | ATTTTTCTTTTACCAATTTT+TGG | - | chr3_1:47109175-47109194 | None:intergenic | 15.0% |
| !! | AAACAAATCAATTACATAAA+TGG | - | chr3_1:47109592-47109611 | None:intergenic | 15.0% |
| !! | AGTAAAAAATTTATATACCA+TGG | - | chr3_1:47110132-47110151 | None:intergenic | 15.0% |
| !!! | CATTATTAGTTTAATTGATT+TGG | - | chr3_1:47110264-47110283 | None:intergenic | 15.0% |
| !! | AAATATTAAAAGATCAAAAC+AGG | - | chr3_1:47110473-47110492 | None:intergenic | 15.0% |
| !!! | ATATGAAAAACTAATTTTTG+AGG | - | chr3_1:47111391-47111410 | None:intergenic | 15.0% |
| !! | ATTACTTATTATTCAATCAA+AGG | - | chr3_1:47111700-47111719 | None:intergenic | 15.0% |
| !! | TATGTTAAGAAATATGAATA+GGG | + | chr3_1:47112252-47112271 | Msa0359500:intron | 15.0% |
| !!! | TTATTTATTTGATAATGGTA+CGG | + | chr3_1:47112594-47112613 | Msa0359500:intron | 15.0% |
| !! | TATATATATGATTATGAACA+TGG | - | chr3_1:47113080-47113099 | None:intergenic | 15.0% |
| !! | ATGTTCAATTATATTTATCT+TGG | + | chr3_1:47113459-47113478 | Msa0359500:three_prime_UTR | 15.0% |
| !!! | TTACTATTTTTTCACATTCA+AGG | + | chr3_1:47106057-47106076 | Msa0359500:intron | 20.0% |
| !! | TATTATTATGGAGTTAAAAC+AGG | + | chr3_1:47106149-47106168 | Msa0359500:intron | 20.0% |
| !! | TAACATCAACTTTATGATAA+AGG | - | chr3_1:47106486-47106505 | None:intergenic | 20.0% |
| !! | ATTATATTGTCTAATTCTTG+TGG | + | chr3_1:47107000-47107019 | Msa0359500:intron | 20.0% |
| !! | TTATATTGTCTAATTCTTGT+GGG | + | chr3_1:47107001-47107020 | Msa0359500:intron | 20.0% |
| !! | CAATTATTACAAATTTGTCA+CGG | + | chr3_1:47107061-47107080 | Msa0359500:intron | 20.0% |
| !! | TGATTATCTACAATTTATGA+AGG | + | chr3_1:47107107-47107126 | Msa0359500:intron | 20.0% |
| !!! | AAAAATCAAAAGATTTTGCA+GGG | - | chr3_1:47107512-47107531 | None:intergenic | 20.0% |
| !!! | TAAAAATCAAAAGATTTTGC+AGG | - | chr3_1:47107513-47107532 | None:intergenic | 20.0% |
| !!! | CAAAAACAAAATATTTTGCA+GGG | - | chr3_1:47107589-47107608 | None:intergenic | 20.0% |
| !!! | TCAAAAACAAAATATTTTGC+AGG | - | chr3_1:47107588-47107607 | None:intergenic | 20.0% |
| !!! | TCAAAAACAAAATATTTTGC+AGG | + | chr3_1:47107588-47107607 | Msa0359500:intron | 20.0% |
| !!! | CAAAAACAAAATATTTTGCA+GGG | + | chr3_1:47107589-47107608 | Msa0359500:intron | 20.0% |
| !! | ATTAAAGTAGTTATGATCTT+TGG | - | chr3_1:47107910-47107929 | None:intergenic | 20.0% |
| !! | CACTAAAACATCAAAAAATT+TGG | + | chr3_1:47107981-47108000 | Msa0359500:intron | 20.0% |
| !! | TTTAACATTGAAAAAAGAGT+TGG | - | chr3_1:47108160-47108179 | None:intergenic | 20.0% |
| !! | GTAAAAAATATTTACATTGG+CGG | + | chr3_1:47108458-47108477 | Msa0359500:intron | 20.0% |
| !! | GTCTAACTATATATTAAACA+TGG | + | chr3_1:47108531-47108550 | Msa0359500:intron | 20.0% |
| !!! | TTAGTTCTCTTTTTTTTTGT+TGG | + | chr3_1:47108664-47108683 | Msa0359500:intron | 20.0% |
| !! | TAATAAGAGTAAAAGACAAA+AGG | + | chr3_1:47108816-47108835 | Msa0359500:intron | 20.0% |
| !! | TGTGGTATGTTTATTATAAT+GGG | - | chr3_1:47108876-47108895 | None:intergenic | 20.0% |
| !! | ATGTGGTATGTTTATTATAA+TGG | - | chr3_1:47108877-47108896 | None:intergenic | 20.0% |
| !! | TTAGATTAATTAATATTGGG+TGG | + | chr3_1:47108983-47109002 | Msa0359500:intron | 20.0% |
| !!! | ACACAAGATTAATTTTGTTT+TGG | - | chr3_1:47109016-47109035 | None:intergenic | 20.0% |
| !!! | AATTTTTGGAAAGTATTATC+TGG | - | chr3_1:47109161-47109180 | None:intergenic | 20.0% |
| !! | AGATAATACTTTCCAAAAAT+TGG | + | chr3_1:47109160-47109179 | Msa0359500:intron | 20.0% |
| !!! | ATCTTTCTTTGTTTTACTTT+GGG | + | chr3_1:47109528-47109547 | Msa0359500:intron | 20.0% |
| !! | ATTACATAAATGGTATTAGT+TGG | - | chr3_1:47109582-47109601 | None:intergenic | 20.0% |
| !!! | TTAATCAACTAAGACAATTT+TGG | + | chr3_1:47109659-47109678 | Msa0359500:intron | 20.0% |
| !! | ACTATCAAAATTGATTGAAT+TGG | - | chr3_1:47109805-47109824 | None:intergenic | 20.0% |
| !!! | GGTAATATTAATGATAATGA+AGG | + | chr3_1:47110029-47110048 | Msa0359500:CDS | 20.0% |
| !!! | ATTCTTTATTGTTTCCTTTT+GGG | + | chr3_1:47110200-47110219 | Msa0359500:intron | 20.0% |
| !!! | ACTAATAATGATAATGCATT+AGG | + | chr3_1:47110274-47110293 | Msa0359500:intron | 20.0% |
| !!! | TCAACAAAGATATTCATTTT+CGG | - | chr3_1:47110771-47110790 | None:intergenic | 20.0% |
| !! | CCTGTATTAATTTAAGAAAA+TGG | - | chr3_1:47110937-47110956 | None:intergenic | 20.0% |
| !!! | CCATTTTCTTAAATTAATAC+AGG | + | chr3_1:47110934-47110953 | Msa0359500:intron | 20.0% |
| !! | ACATTGTATAAAAAAACACT+CGG | - | chr3_1:47112217-47112236 | None:intergenic | 20.0% |
| !! | CTATGTTAAGAAATATGAAT+AGG | + | chr3_1:47112251-47112270 | Msa0359500:intron | 20.0% |
| !!! | TTCTAAATAGTGTTTTATAC+AGG | - | chr3_1:47112305-47112324 | None:intergenic | 20.0% |
| !!! | TTATCTTTTCAACAAATCTT+TGG | + | chr3_1:47112400-47112419 | Msa0359500:intron | 20.0% |
| !! | GTAAACCAAGATATAATTAA+GGG | + | chr3_1:47112431-47112450 | Msa0359500:intron | 20.0% |
| !! | ATTTACCCTTAATTATATCT+TGG | - | chr3_1:47112439-47112458 | None:intergenic | 20.0% |
| !! | AAGATATAATTAAGGGTAAA+TGG | + | chr3_1:47112438-47112457 | Msa0359500:intron | 20.0% |
| !!! | GAGTACTGTATAATATATAT+AGG | + | chr3_1:47112498-47112517 | Msa0359500:intron | 20.0% |
| !!! | ATATATAGGTTCCATAATTT+TGG | + | chr3_1:47112512-47112531 | Msa0359500:intron | 20.0% |
| !!! | TATATAGGTTCCATAATTTT+GGG | + | chr3_1:47112513-47112532 | Msa0359500:intron | 20.0% |
| !! | CTGCATTATTTATTTGATAA+TGG | + | chr3_1:47112589-47112608 | Msa0359500:intron | 20.0% |
| !! | ATTAACATTACGTATTTATC+TGG | + | chr3_1:47112626-47112645 | Msa0359500:intron | 20.0% |
| !! | ACTTCTCTAATAAGTTTATA+CGG | + | chr3_1:47112904-47112923 | Msa0359500:CDS | 20.0% |
| !!! | CTGTAAATTTGATTTTGAAA+TGG | + | chr3_1:47113194-47113213 | Msa0359500:three_prime_UTR | 20.0% |
| !! | GATACATAAACTAAATTTGA+TGG | - | chr3_1:47113326-47113345 | None:intergenic | 20.0% |
| !!! | GAGTTTTTGATAGTAGTTAA+TGG | + | chr3_1:47105640-47105659 | Msa0359500:five_prime_UTR | 25.0% |
| !! | AAGTTTTACATATCAGCAAA+GGG | + | chr3_1:47105676-47105695 | Msa0359500:CDS | 25.0% |
| ! | AAACGAGTAACAATATCAAA+CGG | + | chr3_1:47105703-47105722 | Msa0359500:CDS | 25.0% |
| !! | GGTAACTGAGTAAATTTTAA+CGG | + | chr3_1:47105952-47105971 | Msa0359500:intron | 25.0% |
| ! | TTAAAACAGGAGATTATAGT+TGG | + | chr3_1:47106162-47106181 | Msa0359500:intron | 25.0% |
| !!! | TGCAATTTGTTAACAAAACA+CGG | - | chr3_1:47106886-47106905 | None:intergenic | 25.0% |
| !!! | ATTTATGAAGGTTTTGAGTT+TGG | + | chr3_1:47107119-47107138 | Msa0359500:intron | 25.0% |
| !!! | AATGTTTTTTTCCACACTTT+TGG | + | chr3_1:47107181-47107200 | Msa0359500:intron | 25.0% |
| !!! | TTTTGGCTAAAATATGGTTT+TGG | + | chr3_1:47107322-47107341 | Msa0359500:intron | 25.0% |
| !!! | GGGACTATTTTTCTAATAAA+TGG | - | chr3_1:47107492-47107511 | None:intergenic | 25.0% |
| ! | AGCTAAAACATCAAAAGAAA+GGG | - | chr3_1:47107791-47107810 | None:intergenic | 25.0% |
| !!! | CTCTAAAACATCAAAAGAAA+TGG | + | chr3_1:47108017-47108036 | Msa0359500:intron | 25.0% |
| ! | AAACATCAAAAGAAATGGAA+TGG | + | chr3_1:47108022-47108041 | Msa0359500:intron | 25.0% |
| !! | AAAGTAGGATTATATGGTTT+TGG | - | chr3_1:47108076-47108095 | None:intergenic | 25.0% |
| !!! | CAAGATTTTTTGTTGTTGAA+AGG | - | chr3_1:47108104-47108123 | None:intergenic | 25.0% |
| ! | ACTAACTTTGATACTTGATA+TGG | - | chr3_1:47108196-47108215 | None:intergenic | 25.0% |
| ! | CGGTGTATAAATTTATACTA+TGG | + | chr3_1:47108478-47108497 | Msa0359500:intron | 25.0% |
| !!! | TATGTTTATTATAATGGGTC+AGG | - | chr3_1:47108871-47108890 | None:intergenic | 25.0% |
| !! | ATCTCGTATATTTTTCTTGA+AGG | + | chr3_1:47108914-47108933 | Msa0359500:intron | 25.0% |
| !! | TCTCGTATATTTTTCTTGAA+GGG | + | chr3_1:47108915-47108934 | Msa0359500:intron | 25.0% |
| !! | TTTTTCTTGAAGGGATTATT+AGG | + | chr3_1:47108924-47108943 | Msa0359500:intron | 25.0% |
| ! | TGCTTATCTATTTCAGTTAA+AGG | + | chr3_1:47109035-47109054 | Msa0359500:intron | 25.0% |
| ! | GCTTATCTATTTCAGTTAAA+GGG | + | chr3_1:47109036-47109055 | Msa0359500:intron | 25.0% |
| !! | AAAAAAGCATGACATTGTTT+GGG | + | chr3_1:47109202-47109221 | Msa0359500:intron | 25.0% |
| !!! | GTGTTTTTTTACACACATTA+TGG | + | chr3_1:47109245-47109264 | Msa0359500:intron | 25.0% |
| !!! | TTTTTTACACACATTATGGA+AGG | + | chr3_1:47109249-47109268 | Msa0359500:intron | 25.0% |
| ! | TCTTTATACTCCTATGAAAT+TGG | + | chr3_1:47109343-47109362 | Msa0359500:intron | 25.0% |
| ! | ATAAAAACAAAGAGCAGTAT+AGG | - | chr3_1:47109435-47109454 | None:intergenic | 25.0% |
| !!! | GATCTTTCTTTGTTTTACTT+TGG | + | chr3_1:47109527-47109546 | Msa0359500:intron | 25.0% |
| !! | CTCTTTATTTGACAAAATCA+CGG | - | chr3_1:47109782-47109801 | None:intergenic | 25.0% |
| ! | AAATTTATATACCATGGCTT+TGG | - | chr3_1:47110126-47110145 | None:intergenic | 25.0% |
| !! | CATTCTTTATTGTTTCCTTT+TGG | + | chr3_1:47110199-47110218 | Msa0359500:intron | 25.0% |
| ! | TTAAAAGATCAAAACAGGAT+AGG | - | chr3_1:47110468-47110487 | None:intergenic | 25.0% |
| ! | TGAAAATAACCGATACTTAA+GGG | - | chr3_1:47110547-47110566 | None:intergenic | 25.0% |
| ! | GTATACTATATTGAACAATG+TGG | + | chr3_1:47110639-47110658 | Msa0359500:intron | 25.0% |
| !!! | TATTGAGTTTTAAACCACAA+AGG | + | chr3_1:47110680-47110699 | Msa0359500:intron | 25.0% |
| !!! | ATTGAGTTTTAAACCACAAA+GGG | + | chr3_1:47110681-47110700 | Msa0359500:intron | 25.0% |
| ! | TTGAATATAACTACATGTGT+CGG | - | chr3_1:47110909-47110928 | None:intergenic | 25.0% |
| !!! | TGAAGCATAAGTTTTTTTGT+CGG | - | chr3_1:47111419-47111438 | None:intergenic | 25.0% |
| ! | TGGAAACTAATCACTTAATT+TGG | + | chr3_1:47111548-47111567 | Msa0359500:CDS | 25.0% |
| ! | ATAGTAATTTGAACGCTTTA+CGG | + | chr3_1:47111605-47111624 | Msa0359500:CDS | 25.0% |
| !!! | AATACTATCTTTTTGAGATC+TGG | - | chr3_1:47111799-47111818 | None:intergenic | 25.0% |
| ! | GGTTTAATCTTTATGCATAT+GGG | - | chr3_1:47112165-47112184 | None:intergenic | 25.0% |
| ! | TGGTTTAATCTTTATGCATA+TGG | - | chr3_1:47112166-47112185 | None:intergenic | 25.0% |
| ! | ATAAGAATTTAAACCTTTGC+TGG | - | chr3_1:47112186-47112205 | None:intergenic | 25.0% |
| ! | GGTAAACCAAGATATAATTA+AGG | + | chr3_1:47112430-47112449 | Msa0359500:intron | 25.0% |
| ! | ATCTTAATGAATATTTGAGG+TGG | - | chr3_1:47112966-47112985 | None:intergenic | 25.0% |
| ! | GCAATCTTAATGAATATTTG+AGG | - | chr3_1:47112969-47112988 | None:intergenic | 25.0% |
| GATAGTAGTTAATGGAATCA+AGG | + | chr3_1:47105648-47105667 | Msa0359500:five_prime_UTR | 30.0% | |
| ! | GAAGTTTTACATATCAGCAA+AGG | + | chr3_1:47105675-47105694 | Msa0359500:CDS | 30.0% |
| AGTAACAATATCAAACGGTA+AGG | + | chr3_1:47105708-47105727 | Msa0359500:CDS | 30.0% | |
| GTAACAATATCAAACGGTAA+GGG | + | chr3_1:47105709-47105728 | Msa0359500:CDS | 30.0% | |
| GCAACTCTAACAAAAACAAA+CGG | - | chr3_1:47105856-47105875 | None:intergenic | 30.0% | |
| !!! | TGCTACTTTTTGTTCTTCAT+TGG | + | chr3_1:47105894-47105913 | Msa0359500:CDS | 30.0% |
| !!! | GCTACTTTTTGTTCTTCATT+GGG | + | chr3_1:47105895-47105914 | Msa0359500:CDS | 30.0% |
| !! | CTGAGTAAATTTTAACGGTT+TGG | + | chr3_1:47105957-47105976 | Msa0359500:intron | 30.0% |
| !!! | AAATTTTAACGGTTTGGTAG+AGG | + | chr3_1:47105963-47105982 | Msa0359500:intron | 30.0% |
| ! | TTTTCACATTCAAGGAAATG+AGG | + | chr3_1:47106065-47106084 | Msa0359500:intron | 30.0% |
| AATATCGCATTATATATGCG+TGG | + | chr3_1:47106189-47106208 | Msa0359500:intron | 30.0% | |
| ATATCGCATTATATATGCGT+GGG | + | chr3_1:47106190-47106209 | Msa0359500:intron | 30.0% | |
| CATCAACTTTATGATAAAGG+AGG | - | chr3_1:47106483-47106502 | None:intergenic | 30.0% | |
| !! | GTTGATGTTAGTTTGTACAT+TGG | + | chr3_1:47106496-47106515 | Msa0359500:intron | 30.0% |
| !! | TTTCCGCAACTACTTATTTT+TGG | + | chr3_1:47106651-47106670 | Msa0359500:intron | 30.0% |
| TGACCAAAAATAAGTAGTTG+CGG | - | chr3_1:47106657-47106676 | None:intergenic | 30.0% | |
| GTGGTTGTTAATGAAAAGAT+AGG | + | chr3_1:47106808-47106827 | Msa0359500:intron | 30.0% | |
| !! | GCAATTTGTTAACAAAACAC+GGG | - | chr3_1:47106885-47106904 | None:intergenic | 30.0% |
| TGCATTAATATCCAAAAGTG+TGG | - | chr3_1:47107195-47107214 | None:intergenic | 30.0% | |
| CTAGATCAAATGACGTTATA+AGG | + | chr3_1:47107251-47107270 | Msa0359500:intron | 30.0% | |
| CAAAACGATACATATTTGCA+GGG | - | chr3_1:47107409-47107428 | None:intergenic | 30.0% | |
| !!! | TTGTTTTTGAAAATAGTCCC+TGG | - | chr3_1:47107554-47107573 | None:intergenic | 30.0% |
| ATCAAATCAAATCACTAGAC+AGG | - | chr3_1:47107727-47107746 | None:intergenic | 30.0% | |
| AAACATCAAAAGAAAGGGAA+TGG | - | chr3_1:47107786-47107805 | None:intergenic | 30.0% | |
| GAGCTAAAACATCAAAAGAA+AGG | - | chr3_1:47107792-47107811 | None:intergenic | 30.0% | |
| ! | TTTATGGTGTTTTCCAACAA+GGG | + | chr3_1:47107932-47107951 | Msa0359500:intron | 30.0% |
| ATCAAAAGAAATGGAATGGA+GGG | + | chr3_1:47108026-47108045 | Msa0359500:intron | 30.0% | |
| GAGTAGAAAGTAGGATTATA+TGG | - | chr3_1:47108082-47108101 | None:intergenic | 30.0% | |
| TCAACTGAAATTCCAACATT+TGG | - | chr3_1:47108267-47108286 | None:intergenic | 30.0% | |
| ! | ATACCACATGTCTACATTTT+TGG | + | chr3_1:47108888-47108907 | Msa0359500:intron | 30.0% |
| !!! | CAAACAATGTCATGCTTTTT+TGG | - | chr3_1:47109203-47109222 | None:intergenic | 30.0% |
| ! | CAAAAAAGCATGACATTGTT+TGG | + | chr3_1:47109201-47109220 | Msa0359500:intron | 30.0% |
| TTATTCTTCTCTGCATCAAA+AGG | + | chr3_1:47109497-47109516 | Msa0359500:intron | 30.0% | |
| TGTCATAGAATAGAAGCAAA+TGG | - | chr3_1:47109555-47109574 | None:intergenic | 30.0% | |
| !! | TAAGACAATTTTGGCGATTT+TGG | + | chr3_1:47109668-47109687 | Msa0359500:intron | 30.0% |
| CGTTACTCTATACAATGATT+AGG | + | chr3_1:47110158-47110177 | Msa0359500:intron | 30.0% | |
| !! | TTTATTGTTTCCTTTTGGGT+CGG | + | chr3_1:47110204-47110223 | Msa0359500:intron | 30.0% |
| TTGGGATACATTATTCTGAT+TGG | + | chr3_1:47110342-47110361 | Msa0359500:intron | 30.0% | |
| TTATTCTGATTGGATTTCTG+TGG | + | chr3_1:47110352-47110371 | Msa0359500:intron | 30.0% | |
| CATGTAATTGATCAGAAATG+TGG | + | chr3_1:47110379-47110398 | Msa0359500:intron | 30.0% | |
| GAAAATAACCGATACTTAAG+GGG | - | chr3_1:47110546-47110565 | None:intergenic | 30.0% | |
| CTGAAAATAACCGATACTTA+AGG | - | chr3_1:47110548-47110567 | None:intergenic | 30.0% | |
| ! | TTATTTTCAGAAATGCCATG+TGG | + | chr3_1:47110558-47110577 | Msa0359500:intron | 30.0% |
| ACTGATCAAATCACACAAAT+GGG | + | chr3_1:47110606-47110625 | Msa0359500:intron | 30.0% | |
| ! | TTGAACAATGTGGAAGTATA+AGG | + | chr3_1:47110649-47110668 | Msa0359500:intron | 30.0% |
| ATGATCGTTATGAGTAACAT+TGG | + | chr3_1:47110721-47110740 | Msa0359500:intron | 30.0% | |
| GTTATGAGTAACATTGGTAA+AGG | + | chr3_1:47110727-47110746 | Msa0359500:intron | 30.0% | |
| ! | AGATATTCATTTTCGGACTT+TGG | - | chr3_1:47110764-47110783 | None:intergenic | 30.0% |
| CTACATAGTCTATGCATAAA+TGG | - | chr3_1:47110802-47110821 | None:intergenic | 30.0% | |
| !! | GAAATTGCATGATTTGTTAG+AGG | - | chr3_1:47111079-47111098 | None:intergenic | 30.0% |
| ACAAAGACAGTGTAAACTAT+GGG | - | chr3_1:47111197-47111216 | None:intergenic | 30.0% | |
| !! | ATTGAATGAATTTTCAAGCG+TGG | - | chr3_1:47111368-47111387 | None:intergenic | 30.0% |
| TTTCTTCAGACCAATCATAT+TGG | - | chr3_1:47111504-47111523 | None:intergenic | 30.0% | |
| CAAGAATAACTAATTACCTC+GGG | - | chr3_1:47111673-47111692 | None:intergenic | 30.0% | |
| CCAAGAATAACTAATTACCT+CGG | - | chr3_1:47111674-47111693 | None:intergenic | 30.0% | |
| !! | AAGCATTCAGACTTGTTATT+AGG | - | chr3_1:47111724-47111743 | None:intergenic | 30.0% |
| ! | TCATGCTGATATGATTTTTG+TGG | + | chr3_1:47111757-47111776 | Msa0359500:intron | 30.0% |
| AACATGACATATCTTCTTTG+TGG | + | chr3_1:47111842-47111861 | Msa0359500:CDS | 30.0% | |
| ACATGACATATCTTCTTTGT+GGG | + | chr3_1:47111843-47111862 | Msa0359500:CDS | 30.0% | |
| AGTTCATGTATTTACTTCCA+GGG | - | chr3_1:47111933-47111952 | None:intergenic | 30.0% | |
| TAGTTCATGTATTTACTTCC+AGG | - | chr3_1:47111934-47111953 | None:intergenic | 30.0% | |
| ATGTATTAGATCTTGATGCT+TGG | + | chr3_1:47112025-47112044 | Msa0359500:CDS | 30.0% | |
| TTACAAGTTTCAACCATTTC+CGG | - | chr3_1:47112077-47112096 | None:intergenic | 30.0% | |
| CATAAAGATTAAACCAGCAA+AGG | + | chr3_1:47112170-47112189 | Msa0359500:intron | 30.0% | |
| GTATAAAAAAACACTCGGAA+GGG | - | chr3_1:47112212-47112231 | None:intergenic | 30.0% | |
| TGTATAAAAAAACACTCGGA+AGG | - | chr3_1:47112213-47112232 | None:intergenic | 30.0% | |
| AAGAAATATGAATAGGGCTA+AGG | + | chr3_1:47112258-47112277 | Msa0359500:intron | 30.0% | |
| ! | CAACAAATCTTTGGTTGTTT+TGG | + | chr3_1:47112409-47112428 | Msa0359500:intron | 30.0% |
| ! | TAAATGGCTCTATACCTTAA+AGG | + | chr3_1:47112454-47112473 | Msa0359500:intron | 30.0% |
| TAATTCCGAAGAAATTAGCA+AGG | + | chr3_1:47112779-47112798 | Msa0359500:CDS | 30.0% | |
| ATACGGAGATGTAGAATTAT+AGG | + | chr3_1:47112921-47112940 | Msa0359500:CDS | 30.0% | |
| TACGGAGATGTAGAATTATA+GGG | + | chr3_1:47112922-47112941 | Msa0359500:CDS | 30.0% | |
| ! | AAATTTGATGGTTCCAACAA+AGG | - | chr3_1:47113314-47113333 | None:intergenic | 30.0% |
| ! | GAATTTAGTTCGAGATCTGA+AGG | - | chr3_1:47105597-47105616 | None:intergenic | 35.0% |
| AATATCAAACGGTAAGGGAT+CGG | + | chr3_1:47105714-47105733 | Msa0359500:CDS | 35.0% | |
| ! | TTTTGTTAGAGTTGCGATCT+TGG | + | chr3_1:47105861-47105880 | Msa0359500:CDS | 35.0% |
| !!! | CCATTAGTTTTTTTACCGTG+CGG | + | chr3_1:47105931-47105950 | Msa0359500:intron | 35.0% |
| AAATTTACTCAGTTACCGCA+CGG | - | chr3_1:47105949-47105968 | None:intergenic | 35.0% | |
| ! | ATAAATGAATGGAGTGTCTG+AGG | - | chr3_1:47106228-47106247 | None:intergenic | 35.0% |
| ! | CACTGGTAAGTGTCTTTTTA+TGG | + | chr3_1:47106576-47106595 | Msa0359500:intron | 35.0% |
| TCCACGCTTTGTCAAAATAT+TGG | + | chr3_1:47106691-47106710 | Msa0359500:intron | 35.0% | |
| CCACGCTTTGTCAAAATATT+GGG | + | chr3_1:47106692-47106711 | Msa0359500:intron | 35.0% | |
| ! | TAAGCCACTTTGTGTGAAAA+AGG | - | chr3_1:47106836-47106855 | None:intergenic | 35.0% |
| TCACACAAAGTGGCTTAAAT+AGG | + | chr3_1:47106839-47106858 | Msa0359500:intron | 35.0% | |
| TAAGTGACCTAGAACATTGT+CGG | - | chr3_1:47106920-47106939 | None:intergenic | 35.0% | |
| ! | CAATGTTCTAGGTCACTTAT+TGG | + | chr3_1:47106921-47106940 | Msa0359500:intron | 35.0% |
| TTACAAATTTGTCACGGTTC+TGG | + | chr3_1:47107067-47107086 | Msa0359500:intron | 35.0% | |
| TACAAATTTGTCACGGTTCT+GGG | + | chr3_1:47107068-47107087 | Msa0359500:intron | 35.0% | |
| !!! | TATGAAGGTTTTGAGTTTGG+AGG | + | chr3_1:47107122-47107141 | Msa0359500:intron | 35.0% |
| CAAAATGAGGCATATTTGCA+GGG | - | chr3_1:47107349-47107368 | None:intergenic | 35.0% | |
| CCAAAACGATACATATTTGC+AGG | - | chr3_1:47107410-47107429 | None:intergenic | 35.0% | |
| ! | CCTGCAAATATGTATCGTTT+TGG | + | chr3_1:47107407-47107426 | Msa0359500:intron | 35.0% |
| TGCAAATCAACACAAAAGTG+GGG | - | chr3_1:47107446-47107465 | None:intergenic | 35.0% | |
| GTGCAAATCAACACAAAAGT+GGG | - | chr3_1:47107447-47107466 | None:intergenic | 35.0% | |
| TGTGCAAATCAACACAAAAG+TGG | - | chr3_1:47107448-47107467 | None:intergenic | 35.0% | |
| !! | TTTTTGAAAATAGTCCCTCC+AGG | + | chr3_1:47107557-47107576 | Msa0359500:intron | 35.0% |
| !! | TTTTGAAAATAGTCCCTCCA+GGG | + | chr3_1:47107558-47107577 | Msa0359500:intron | 35.0% |
| !! | TTTTGAAAATAGTCCCTGGA+GGG | - | chr3_1:47107574-47107593 | None:intergenic | 35.0% |
| !! | TTTTTGAAAATAGTCCCTGG+AGG | - | chr3_1:47107575-47107594 | None:intergenic | 35.0% |
| CAAAACGAGGCATATTTACA+GGG | + | chr3_1:47107649-47107668 | Msa0359500:intron | 35.0% | |
| ATCAAAAGAAAGGGAATGGA+GGG | - | chr3_1:47107782-47107801 | None:intergenic | 35.0% | |
| ! | AGCTCTTGACACAAGTTTTA+AGG | + | chr3_1:47107807-47107826 | Msa0359500:intron | 35.0% |
| ! | GTTTATGGTGTTTTCCAACA+AGG | + | chr3_1:47107931-47107950 | Msa0359500:intron | 35.0% |
| TTTCTCAAGTTTACCCTTGT+TGG | - | chr3_1:47107948-47107967 | None:intergenic | 35.0% | |
| CATCAAAAGAAATGGAATGG+AGG | + | chr3_1:47108025-47108044 | Msa0359500:intron | 35.0% | |
| TGTTGAAAGGAGTAGAAAGT+AGG | - | chr3_1:47108091-47108110 | None:intergenic | 35.0% | |
| AGTTTAATGCACGTACAATG+AGG | + | chr3_1:47108237-47108256 | Msa0359500:intron | 35.0% | |
| CAATGAGGTTAACCAAATGT+TGG | + | chr3_1:47108252-47108271 | Msa0359500:intron | 35.0% | |
| ! | GGAATTTTCGAAAGAAAAGC+TGG | - | chr3_1:47108735-47108754 | None:intergenic | 35.0% |
| GTACCAAAAATGTAGACATG+TGG | - | chr3_1:47108894-47108913 | None:intergenic | 35.0% | |
| TACACACATTATGGAAGGAT+TGG | + | chr3_1:47109254-47109273 | Msa0359500:intron | 35.0% | |
| CAATGCACTACCAATTTCAT+AGG | - | chr3_1:47109356-47109375 | None:intergenic | 35.0% | |
| !! | AGGTTTTGTACAGGTTTATG+TGG | - | chr3_1:47109830-47109849 | None:intergenic | 35.0% |
| AACTTCAATAATGTGTGCAC+AGG | - | chr3_1:47109850-47109869 | None:intergenic | 35.0% | |
| !! | ATATACAAGTTGGTGCAGAA+GGG | - | chr3_1:47109905-47109924 | None:intergenic | 35.0% |
| !! | AATATACAAGTTGGTGCAGA+AGG | - | chr3_1:47109906-47109925 | None:intergenic | 35.0% |
| CAATGAACTTGTGAAAGAGA+TGG | + | chr3_1:47110064-47110083 | Msa0359500:CDS | 35.0% | |
| TCTTGAAAGCAAAAGCTTTG+AGG | - | chr3_1:47110103-47110122 | None:intergenic | 35.0% | |
| CAAGAAATCCCCTTAAGTAT+CGG | + | chr3_1:47110535-47110554 | Msa0359500:intron | 35.0% | |
| GACTGATCAAATCACACAAA+TGG | + | chr3_1:47110605-47110624 | Msa0359500:intron | 35.0% | |
| CTGATCAAATCACACAAATG+GGG | + | chr3_1:47110607-47110626 | Msa0359500:intron | 35.0% | |
| AGAAATACATACACCCTTTG+TGG | - | chr3_1:47110697-47110716 | None:intergenic | 35.0% | |
| ATGTCTTCCATATGAAGTGT+CGG | - | chr3_1:47110827-47110846 | None:intergenic | 35.0% | |
| AATACAGGTGTCAATGTGTT+CGG | + | chr3_1:47110949-47110968 | Msa0359500:intron | 35.0% | |
| CATTGCTTCATAGTGCATAT+AGG | + | chr3_1:47110999-47111018 | Msa0359500:intron | 35.0% | |
| ACATATTCAGCTATCACAGA+TGG | + | chr3_1:47111105-47111124 | Msa0359500:intron | 35.0% | |
| CAAAGACAGTGTAAACTATG+GGG | - | chr3_1:47111196-47111215 | None:intergenic | 35.0% | |
| GACAAAGACAGTGTAAACTA+TGG | - | chr3_1:47111198-47111217 | None:intergenic | 35.0% | |
| ACACTGTCTTTGTCTTAAGT+TGG | + | chr3_1:47111204-47111223 | Msa0359500:CDS | 35.0% | |
| AGAATATGCTGTAAATGCCA+TGG | + | chr3_1:47111231-47111250 | Msa0359500:CDS | 35.0% | |
| CATTATCAGTTAGGAGAACT+AGG | - | chr3_1:47111318-47111337 | None:intergenic | 35.0% | |
| ! | AACAGCTGATTCAACAGAAT+TGG | - | chr3_1:47111461-47111480 | None:intergenic | 35.0% |
| ATCAGCTGTTGTTGAAGTTA+AGG | + | chr3_1:47111471-47111490 | Msa0359500:CDS | 35.0% | |
| TCAGCTGTTGTTGAAGTTAA+GGG | + | chr3_1:47111472-47111491 | Msa0359500:CDS | 35.0% | |
| CCGAGGTAATTAGTTATTCT+TGG | + | chr3_1:47111671-47111690 | Msa0359500:intron | 35.0% | |
| TTCTGCTACATAATGTGTCA+TGG | + | chr3_1:47112136-47112155 | Msa0359500:intron | 35.0% | |
| TCCCTAATCTTTGGTCTATT+AGG | + | chr3_1:47112373-47112392 | Msa0359500:intron | 35.0% | |
| GCCTAATAGACCAAAGATTA+GGG | - | chr3_1:47112377-47112396 | None:intergenic | 35.0% | |
| AGCCTAATAGACCAAAGATT+AGG | - | chr3_1:47112378-47112397 | None:intergenic | 35.0% | |
| ACCTTAAAGGATCAATGATC+AGG | + | chr3_1:47112467-47112486 | Msa0359500:intron | 35.0% | |
| TCCTGATCATTGATCCTTTA+AGG | - | chr3_1:47112471-47112490 | None:intergenic | 35.0% | |
| AAAGGATCAATGATCAGGAA+CGG | + | chr3_1:47112472-47112491 | Msa0359500:intron | 35.0% | |
| GGAACTCATTCCCAAAATTA+TGG | - | chr3_1:47112526-47112545 | None:intergenic | 35.0% | |
| GTAAATCTGACAACTTCATG+TGG | - | chr3_1:47112547-47112566 | None:intergenic | 35.0% | |
| ATGGATCTATAGGATGTACT+TGG | - | chr3_1:47112728-47112747 | None:intergenic | 35.0% | |
| !! | ACAAGCATTGATGGATCTAT+AGG | - | chr3_1:47112738-47112757 | None:intergenic | 35.0% |
| !! | AAATCAGTCACAAGCATTGA+TGG | - | chr3_1:47112747-47112766 | None:intergenic | 35.0% |
| ! | TCAATGCTTGTGACTGATTT+AGG | + | chr3_1:47112747-47112766 | Msa0359500:CDS | 35.0% |
| ACTCTCCTTGCTAATTTCTT+CGG | - | chr3_1:47112787-47112806 | None:intergenic | 35.0% | |
| GTTTCGACATTTCAATGAGA+CGG | + | chr3_1:47113224-47113243 | Msa0359500:three_prime_UTR | 35.0% | |
| ! | AGTCTTGTAAGTACCTTTGT+TGG | + | chr3_1:47113298-47113317 | Msa0359500:three_prime_UTR | 35.0% |
| ! | CGTGAGTGATTTTGTTCTGA+AGG | - | chr3_1:47105560-47105579 | None:intergenic | 40.0% |
| CCGCACGGTAAAAAAACTAA+TGG | - | chr3_1:47105934-47105953 | None:intergenic | 40.0% | |
| AACAGGAGATTATAGTTGGC+AGG | + | chr3_1:47106166-47106185 | Msa0359500:intron | 40.0% | |
| !!! | CCCAATATTTTGACAAAGCG+TGG | - | chr3_1:47106695-47106714 | None:intergenic | 40.0% |
| TATTGGGCAATTCACGTTAC+TGG | + | chr3_1:47106708-47106727 | Msa0359500:intron | 40.0% | |
| !! | GGTTCCTTTTTCACACAAAG+TGG | + | chr3_1:47106829-47106848 | Msa0359500:intron | 40.0% |
| GTGATTACCGACAATGTTCT+AGG | + | chr3_1:47106910-47106929 | Msa0359500:intron | 40.0% | |
| TCTCGAAATTAACGAGTTCG+TGG | - | chr3_1:47107297-47107316 | None:intergenic | 40.0% | |
| CCAAAATGAGGCATATTTGC+AGG | - | chr3_1:47107350-47107369 | None:intergenic | 40.0% | |
| ! | CCTGCAAATATGCCTCATTT+TGG | + | chr3_1:47107347-47107366 | Msa0359500:intron | 40.0% |
| CAGGGACTAAAACCAAAATG+AGG | - | chr3_1:47107362-47107381 | None:intergenic | 40.0% | |
| !!! | ATCGTTTTGGTTTTTGTCCC+TGG | + | chr3_1:47107420-47107439 | Msa0359500:intron | 40.0% |
| !! | TTTGTGTTGATTTGCACACG+TGG | + | chr3_1:47107450-47107469 | Msa0359500:intron | 40.0% |
| ! | CATGGACTAAAACCAAAACG+AGG | + | chr3_1:47107636-47107655 | Msa0359500:intron | 40.0% |
| ! | CCTGTAAATATGCCTCGTTT+TGG | - | chr3_1:47107651-47107670 | None:intergenic | 40.0% |
| CCAAAACGAGGCATATTTAC+AGG | + | chr3_1:47107648-47107667 | Msa0359500:intron | 40.0% | |
| CATCAAAAGAAAGGGAATGG+AGG | - | chr3_1:47107783-47107802 | None:intergenic | 40.0% | |
| ACGACTCTAACAACATGAAC+TGG | - | chr3_1:47108756-47108775 | None:intergenic | 40.0% | |
| TGTTAGAGTCGTTTGTCAGA+CGG | + | chr3_1:47108764-47108783 | Msa0359500:intron | 40.0% | |
| AGGGACATAAAAATGCTGAC+TGG | + | chr3_1:47109055-47109074 | Msa0359500:intron | 40.0% | |
| AGTTGCATTTGTGCAATCTG+TGG | + | chr3_1:47109390-47109409 | Msa0359500:intron | 40.0% | |
| GTTGCATTTGTGCAATCTGT+GGG | + | chr3_1:47109391-47109410 | Msa0359500:intron | 40.0% | |
| AGAATCATGACATGCCAATG+CGG | + | chr3_1:47109709-47109728 | Msa0359500:intron | 40.0% | |
| ! | AGCTTTTGTCAAAACCGCAT+TGG | - | chr3_1:47109726-47109745 | None:intergenic | 40.0% |
| TGCCTTGCAACTGAATTCTT+TGG | + | chr3_1:47110323-47110342 | Msa0359500:intron | 40.0% | |
| GCCTTGCAACTGAATTCTTT+GGG | + | chr3_1:47110324-47110343 | Msa0359500:intron | 40.0% | |
| TCCCAAAGAATTCAGTTGCA+AGG | - | chr3_1:47110328-47110347 | None:intergenic | 40.0% | |
| !! | CTGTAGTGTTTTGAACCACA+TGG | - | chr3_1:47110576-47110595 | None:intergenic | 40.0% |
| AACAGCAGGAGTCAGTTTAT+TGG | + | chr3_1:47111149-47111168 | Msa0359500:CDS | 40.0% | |
| TATTGGCATCTAGCATCACA+TGG | + | chr3_1:47111166-47111185 | Msa0359500:CDS | 40.0% | |
| GAACTAGGTGATGAAGAGTA+GGG | - | chr3_1:47111303-47111322 | None:intergenic | 40.0% | |
| AGAACTAGGTGATGAAGAGT+AGG | - | chr3_1:47111304-47111323 | None:intergenic | 40.0% | |
| !! | GAATGAATTTTCAAGCGTGG+AGG | - | chr3_1:47111365-47111384 | None:intergenic | 40.0% |
| CTTATGCTTCAATGCATGCT+TGG | + | chr3_1:47111428-47111447 | Msa0359500:CDS | 40.0% | |
| ! | AGCTGATTCAACAGAATTGG+TGG | - | chr3_1:47111458-47111477 | None:intergenic | 40.0% |
| AGGGATTGCACCAATATGAT+TGG | + | chr3_1:47111491-47111510 | Msa0359500:CDS | 40.0% | |
| TGGTCTGAAGAAATGAATGC+TGG | + | chr3_1:47111511-47111530 | Msa0359500:CDS | 40.0% | |
| TTCATCAAAGAAAGGCTGCT+AGG | - | chr3_1:47111631-47111650 | None:intergenic | 40.0% | |
| ! | GGAGTTGGTTCATCAAAGAA+AGG | - | chr3_1:47111639-47111658 | None:intergenic | 40.0% |
| TTACCTCGGGCATATAAATG+CGG | - | chr3_1:47111660-47111679 | None:intergenic | 40.0% | |
| AGATCTGGAAAAAGCTGTAG+TGG | - | chr3_1:47111784-47111803 | None:intergenic | 40.0% | |
| TTGTGGGACGTAGATCTTAA+TGG | + | chr3_1:47111859-47111878 | Msa0359500:CDS | 40.0% | |
| GATCTTAATGGCAAAGTCAG+TGG | + | chr3_1:47111871-47111890 | Msa0359500:CDS | 40.0% | |
| GTGGTTCAGTATTCAAGTCT+TGG | + | chr3_1:47111890-47111909 | Msa0359500:CDS | 40.0% | |
| TCGAAACTCGATGATATGAG+AGG | - | chr3_1:47111973-47111992 | None:intergenic | 40.0% | |
| CTCATATCATCGAGTTTCGA+CGG | + | chr3_1:47111973-47111992 | Msa0359500:CDS | 40.0% | |
| CAAACATAACAGAGACCTAC+CGG | + | chr3_1:47112055-47112074 | Msa0359500:CDS | 40.0% | |
| AAGTTTCAACCATTTCCGGT+AGG | - | chr3_1:47112073-47112092 | None:intergenic | 40.0% | |
| TTTCACAGAACCTCAAGTCT+GGG | + | chr3_1:47112649-47112668 | Msa0359500:intron | 40.0% | |
| TCAAATGCAATCAAGGAAGG+TGG | - | chr3_1:47112702-47112721 | None:intergenic | 40.0% | |
| CCATCAAATGCAATCAAGGA+AGG | - | chr3_1:47112705-47112724 | None:intergenic | 40.0% | |
| CCTTCCTTGATTGCATTTGA+TGG | + | chr3_1:47112702-47112721 | Msa0359500:CDS | 40.0% | |
| TTGGCCATCAAATGCAATCA+AGG | - | chr3_1:47112709-47112728 | None:intergenic | 40.0% | |
| !! | TTTCAAGCCATGGTTTTGCA+GGG | - | chr3_1:47112842-47112861 | None:intergenic | 40.0% |
| !! | ATTTCAAGCCATGGTTTTGC+AGG | - | chr3_1:47112843-47112862 | None:intergenic | 40.0% |
| GCAAAACCATGGCTTGAAAT+TGG | + | chr3_1:47112843-47112862 | Msa0359500:CDS | 40.0% | |
| !! | TCCCAGAGTATCGAAGTTTA+TGG | + | chr3_1:47112868-47112887 | Msa0359500:CDS | 40.0% |
| CCCATAAACTTCGATACTCT+GGG | - | chr3_1:47112872-47112891 | None:intergenic | 40.0% | |
| !! | CCCAGAGTATCGAAGTTTAT+GGG | + | chr3_1:47112869-47112888 | Msa0359500:CDS | 40.0% |
| !! | CCAGAGTATCGAAGTTTATG+GGG | + | chr3_1:47112870-47112889 | Msa0359500:CDS | 40.0% |
| TTGCATCATTGATACCGTGT+TGG | + | chr3_1:47112985-47113004 | Msa0359500:three_prime_UTR | 40.0% | |
| ! | TTGATACCGTGTTGGATTAG+AGG | + | chr3_1:47112993-47113012 | Msa0359500:three_prime_UTR | 40.0% |
| ! | TGATACCGTGTTGGATTAGA+GGG | + | chr3_1:47112994-47113013 | Msa0359500:three_prime_UTR | 40.0% |
| TTCTTCCCTCTAATCCAACA+CGG | - | chr3_1:47113002-47113021 | None:intergenic | 40.0% | |
| ACGTATGAATCAGAGACTGA+AGG | - | chr3_1:47113032-47113051 | None:intergenic | 40.0% | |
| GCAGTATCTGCAGTTAAGAA+AGG | + | chr3_1:47113138-47113157 | Msa0359500:three_prime_UTR | 40.0% | |
| TGAGACGGTTATAAGACACT+AGG | + | chr3_1:47113239-47113258 | Msa0359500:three_prime_UTR | 40.0% | |
| ! | GAAAGAGAGAAGAGAGTGTG+AGG | - | chr3_1:47105497-47105516 | None:intergenic | 45.0% |
| AGTTCGAGATCTGAAGGTGA+AGG | - | chr3_1:47105591-47105610 | None:intergenic | 45.0% | |
| ATGACTGTTGCAGAATGTGC+TGG | + | chr3_1:47106524-47106543 | Msa0359500:intron | 45.0% | |
| TGACTGTTGCAGAATGTGCT+GGG | + | chr3_1:47106525-47106544 | Msa0359500:intron | 45.0% | |
| !! | ATTTGTCACGGTTCTGGGTT+TGG | + | chr3_1:47107073-47107092 | Msa0359500:intron | 45.0% |
| TTTGTGCAATCTGTGGGACA+TGG | + | chr3_1:47109397-47109416 | Msa0359500:intron | 45.0% | |
| !! | TGTGTGCACAGGTTTTGTAC+AGG | - | chr3_1:47109839-47109858 | None:intergenic | 45.0% |
| ATTTGCTTCCATTAGCGCTC+TGG | - | chr3_1:47110006-47110025 | None:intergenic | 45.0% | |
| GCGCTAATGGAAGCAAATGA+TGG | + | chr3_1:47110008-47110027 | Msa0359500:CDS | 45.0% | |
| TGCTTTCAAGACCAAAGCCA+TGG | + | chr3_1:47110112-47110131 | Msa0359500:CDS | 45.0% | |
| AATATGCACACCGACCCAAA+AGG | - | chr3_1:47110217-47110236 | None:intergenic | 45.0% | |
| !! | TGTAGCACCGACACTTCATA+TGG | + | chr3_1:47110817-47110836 | Msa0359500:intron | 45.0% |
| ! | TGTCTTGTGCCGATATGTGT+CGG | + | chr3_1:47110846-47110865 | Msa0359500:intron | 45.0% |
| TGTACGACACCGACACATAT+CGG | - | chr3_1:47110858-47110877 | None:intergenic | 45.0% | |
| !! | CATGTGTCGGTGTCATACAT+AGG | - | chr3_1:47110896-47110915 | None:intergenic | 45.0% |
| GCTATCACAGATGGAACACA+AGG | + | chr3_1:47111114-47111133 | Msa0359500:intron | 45.0% | |
| TGAATTCGCTTCTCGCCTTT+CGG | + | chr3_1:47111276-47111295 | Msa0359500:CDS | 45.0% | |
| CGGCAAGGACATTATCAGTT+AGG | - | chr3_1:47111327-47111346 | None:intergenic | 45.0% | |
| ! | TGCTGGTGTTAAAGAGATGC+TGG | + | chr3_1:47111528-47111547 | Msa0359500:CDS | 45.0% |
| AGTTTCGACGGTGAACAATG+TGG | + | chr3_1:47111985-47112004 | Msa0359500:CDS | 45.0% | |
| GTTTCGACGGTGAACAATGT+GGG | + | chr3_1:47111986-47112005 | Msa0359500:CDS | 45.0% | |
| TAACAGAGACCTACCGGAAA+TGG | + | chr3_1:47112061-47112080 | Msa0359500:CDS | 45.0% | |
| GACCAAAGATTAGGGACGTA+GGG | - | chr3_1:47112369-47112388 | None:intergenic | 45.0% | |
| AGACCAAAGATTAGGGACGT+AGG | - | chr3_1:47112370-47112389 | None:intergenic | 45.0% | |
| GATCAATGATCAGGAACGGA+GGG | + | chr3_1:47112476-47112495 | Msa0359500:intron | 45.0% | |
| GTTTCACAGAACCTCAAGTC+TGG | + | chr3_1:47112648-47112667 | Msa0359500:intron | 45.0% | |
| GCTTCGGTTATCCATTTCAG+TGG | + | chr3_1:47112816-47112835 | Msa0359500:CDS | 45.0% | |
| GGGAAACCAATTTCAAGCCA+TGG | - | chr3_1:47112852-47112871 | None:intergenic | 45.0% | |
| CCCCATAAACTTCGATACTC+TGG | - | chr3_1:47112873-47112892 | None:intergenic | 45.0% | |
| GCTTCTAGTAGGATACTGCT+TGG | - | chr3_1:47113120-47113139 | None:intergenic | 45.0% | |
| CTGCAGATACTGCTTCTAGT+AGG | - | chr3_1:47113131-47113150 | None:intergenic | 45.0% | |
| !! | TAGTTATTAAAATATTATTA+TGG | + | chr3_1:47106137-47106156 | Msa0359500:intron | 5.0% |
| !!! | TTTTTAAAATTATTTTTTAG+TGG | + | chr3_1:47106378-47106397 | Msa0359500:intron | 5.0% |
| !! | TATAGAAAAAATTATTAAAA+TGG | + | chr3_1:47106755-47106774 | Msa0359500:intron | 5.0% |
| !!! | TAATTTTAAATAATTTTTTG+TGG | + | chr3_1:47106789-47106808 | Msa0359500:intron | 5.0% |
| GGAGTAAGTCCGACTGTTAG+TGG | + | chr3_1:47105763-47105782 | Msa0359500:CDS | 50.0% | |
| CCGGAAGAACCACTAACAGT+CGG | - | chr3_1:47105775-47105794 | None:intergenic | 50.0% | |
| CCGACTGTTAGTGGTTCTTC+CGG | + | chr3_1:47105772-47105791 | Msa0359500:CDS | 50.0% | |
| ! | TTCCGGTGGTGTTAGTGCTT+GGG | + | chr3_1:47105821-47105840 | Msa0359500:CDS | 50.0% |
| ATCCCAAGCACTAACACCAC+CGG | - | chr3_1:47105826-47105845 | None:intergenic | 50.0% | |
| TCAACACAAAAGTGGGGCCA+GGG | - | chr3_1:47107440-47107459 | None:intergenic | 50.0% | |
| ATCAACACAAAAGTGGGGCC+AGG | - | chr3_1:47107441-47107460 | None:intergenic | 50.0% | |
| ! | TGAGCTAACCAGAGCGCTAA+TGG | + | chr3_1:47109995-47110014 | Msa0359500:CDS | 50.0% |
| TGGGTCGGTGTGCATATTTC+AGG | + | chr3_1:47110219-47110238 | Msa0359500:intron | 50.0% | |
| !! | TGTGTCGGTGTCGTACATGT+CGG | + | chr3_1:47110861-47110880 | Msa0359500:intron | 50.0% |
| GGTGCAAACAGCAAAACAGC+AGG | + | chr3_1:47111135-47111154 | Msa0359500:CDS | 50.0% | |
| GAAAGGCGAGAAGCGAATTC+AGG | - | chr3_1:47111277-47111296 | None:intergenic | 50.0% | |
| GATGAAGAGTAGGGTCCGAA+AGG | - | chr3_1:47111294-47111313 | None:intergenic | 50.0% | |
| CGGGCATATAAATGCGGAGT+TGG | - | chr3_1:47111654-47111673 | None:intergenic | 50.0% | |
| ACTCCGCATTTATATGCCCG+AGG | + | chr3_1:47111654-47111673 | Msa0359500:CDS | 50.0% | |
| ! | GAACAATGTGGGTGGCTCTA+TGG | + | chr3_1:47111997-47112016 | Msa0359500:CDS | 50.0% |
| CTCCCTACGTCCCTAATCTT+TGG | + | chr3_1:47112364-47112383 | Msa0359500:intron | 50.0% | |
| GGATCAATGATCAGGAACGG+AGG | + | chr3_1:47112475-47112494 | Msa0359500:intron | 50.0% | |
| AAGGAAGGTGGAAGAACTCC+TGG | - | chr3_1:47112690-47112709 | None:intergenic | 50.0% | |
| GGAGAGTCTAGAAGCTGCTT+CGG | + | chr3_1:47112800-47112819 | Msa0359500:CDS | 50.0% | |
| ! | GTTTTGCAGGGCCACTGAAA+TGG | - | chr3_1:47112830-47112849 | None:intergenic | 50.0% |
| AAACGGTAAGGGATCGGCGA+AGG | + | chr3_1:47105720-47105739 | Msa0359500:CDS | 55.0% | |
| GGCGAAGGATACAACGACGA+CGG | + | chr3_1:47105735-47105754 | Msa0359500:CDS | 55.0% | |
| GAAGGATACAACGACGACGG+CGG | + | chr3_1:47105738-47105757 | Msa0359500:CDS | 55.0% | |
| AAGGATACAACGACGACGGC+GGG | + | chr3_1:47105739-47105758 | Msa0359500:CDS | 55.0% | |
| TTAGTGGTTCTTCCGGTCGC+CGG | + | chr3_1:47105779-47105798 | Msa0359500:CDS | 55.0% | |
| ! | CTTCCGGTGGTGTTAGTGCT+TGG | + | chr3_1:47105820-47105839 | Msa0359500:CDS | 55.0% |
| CTGTTGCAGAATGTGCTGGG+TGG | + | chr3_1:47106528-47106547 | Msa0359500:intron | 55.0% | |
| TTGCAGAATGTGCTGGGTGG+AGG | + | chr3_1:47106531-47106550 | Msa0359500:intron | 55.0% | |
| !! | GCTGGGTGGAGGTTTTTCAG+TGG | + | chr3_1:47106542-47106561 | Msa0359500:CDS | 55.0% |
| AAGCGAATTCAGGAGGAGGC+AGG | - | chr3_1:47111267-47111286 | None:intergenic | 55.0% | |
| CGAGAAGCGAATTCAGGAGG+AGG | - | chr3_1:47111271-47111290 | None:intergenic | 55.0% | |
| AGGCGAGAAGCGAATTCAGG+AGG | - | chr3_1:47111274-47111293 | None:intergenic | 55.0% | |
| CTACAACAACAGAGGCGGCA+AGG | - | chr3_1:47111342-47111361 | None:intergenic | 55.0% | |
| GGAGGCTACAACAACAGAGG+CGG | - | chr3_1:47111347-47111366 | None:intergenic | 55.0% | |
| CGTGGAGGCTACAACAACAG+AGG | - | chr3_1:47111350-47111369 | None:intergenic | 55.0% | |
| ! | TGTGAAGACAAGTGCTGCCC+TGG | + | chr3_1:47111913-47111932 | Msa0359500:CDS | 55.0% |
| TCGACGGTGAACAATGTGGG+TGG | + | chr3_1:47111989-47112008 | Msa0359500:CDS | 55.0% | |
| ACAGTGCTGTCCCAGACTTG+AGG | - | chr3_1:47112662-47112681 | None:intergenic | 55.0% | |
| ! | TCAAGTCTGGGACAGCACTG+TGG | + | chr3_1:47112661-47112680 | Msa0359500:CDS | 55.0% |
| TCAGTGGCCCTGCAAAACCA+TGG | + | chr3_1:47112832-47112851 | Msa0359500:CDS | 55.0% | |
| TCGCCGGATTTCACTCCGGA+CGG | + | chr3_1:47105795-47105814 | Msa0359500:CDS | 60.0% | |
| GCACCGTCCGGAGTGAAATC+CGG | - | chr3_1:47105801-47105820 | None:intergenic | 60.0% | |
| TTCACTCCGGACGGTGCTTC+CGG | + | chr3_1:47105804-47105823 | Msa0359500:CDS | 60.0% | |
| CAGTGGAGCTGACACGTCAC+TGG | + | chr3_1:47106559-47106578 | Msa0359500:CDS | 60.0% | |
| GGGACAGCACTGTGGAATCC+AGG | + | chr3_1:47112669-47112688 | Msa0359500:CDS | 60.0% | |
| GATACAACGACGACGGCGGG+AGG | + | chr3_1:47105742-47105761 | Msa0359500:CDS | 65.0% | |
| CCGGAGTGAAATCCGGCGAC+CGG | - | chr3_1:47105794-47105813 | None:intergenic | 65.0% | |
| CCGGTCGCCGGATTTCACTC+CGG | + | chr3_1:47105791-47105810 | Msa0359500:CDS | 65.0% | |
| !! | ACACCACCGGAAGCACCGTC+CGG | - | chr3_1:47105813-47105832 | None:intergenic | 65.0% |
| AGGCAGGCGAGATCGAGCCA+TGG | - | chr3_1:47111251-47111270 | None:intergenic | 65.0% | |
| ACTCCGGACGGTGCTTCCGG+TGG | + | chr3_1:47105807-47105826 | Msa0359500:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 47105458 | 47113506 | 47105458 | ID=Msa0359500;Name=Msa0359500 |
| chr3_1 | mRNA | 47105458 | 47113506 | 47105458 | ID=Msa0359500-mRNA-1;Parent=Msa0359500;Name=Msa0359500-mRNA-1;_AED=0.03;_eAED=0.03;_QI=215|1|1|1|1|1|6|559|530 |
| chr3_1 | exon | 47105458 | 47105916 | 47105458 | ID=Msa0359500-mRNA-1:exon:8291;Parent=Msa0359500-mRNA-1 |
| chr3_1 | exon | 47106537 | 47106580 | 47106537 | ID=Msa0359500-mRNA-1:exon:8292;Parent=Msa0359500-mRNA-1 |
| chr3_1 | exon | 47109984 | 47110133 | 47109984 | ID=Msa0359500-mRNA-1:exon:8293;Parent=Msa0359500-mRNA-1 |
| chr3_1 | exon | 47111115 | 47111675 | 47111115 | ID=Msa0359500-mRNA-1:exon:8294;Parent=Msa0359500-mRNA-1 |
| chr3_1 | exon | 47111790 | 47112092 | 47111790 | ID=Msa0359500-mRNA-1:exon:8295;Parent=Msa0359500-mRNA-1 |
| chr3_1 | exon | 47112657 | 47113506 | 47112657 | ID=Msa0359500-mRNA-1:exon:8296;Parent=Msa0359500-mRNA-1 |
| chr3_1 | five_prime_UTR | 47105458 | 47105672 | 47105458 | ID=Msa0359500-mRNA-1:five_prime_utr;Parent=Msa0359500-mRNA-1 |
| chr3_1 | CDS | 47105673 | 47105916 | 47105673 | ID=Msa0359500-mRNA-1:cds;Parent=Msa0359500-mRNA-1 |
| chr3_1 | CDS | 47106537 | 47106580 | 47106537 | ID=Msa0359500-mRNA-1:cds;Parent=Msa0359500-mRNA-1 |
| chr3_1 | CDS | 47109984 | 47110133 | 47109984 | ID=Msa0359500-mRNA-1:cds;Parent=Msa0359500-mRNA-1 |
| chr3_1 | CDS | 47111115 | 47111675 | 47111115 | ID=Msa0359500-mRNA-1:cds;Parent=Msa0359500-mRNA-1 |
| chr3_1 | CDS | 47111790 | 47112092 | 47111790 | ID=Msa0359500-mRNA-1:cds;Parent=Msa0359500-mRNA-1 |
| chr3_1 | CDS | 47112657 | 47112947 | 47112657 | ID=Msa0359500-mRNA-1:cds;Parent=Msa0359500-mRNA-1 |
| chr3_1 | three_prime_UTR | 47112948 | 47113506 | 47112948 | ID=Msa0359500-mRNA-1:three_prime_utr;Parent=Msa0359500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
