AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0499430

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0499430 MtrunA17_Chr3g0097091 98.117 531 9 1 1 531 1 530 0.0 1080
Msa0499430 MtrunA17_Chr7g0218571 46.337 505 252 5 41 529 34 535 1.08e-156 457
Msa0499430 MtrunA17_Chr6g0454101 46.215 502 251 5 45 530 33 531 3.92e-144 425
Msa0499430 MtrunA17_Chr2g0319311 41.606 548 283 8 1 529 10 539 1.99e-136 405
Msa0499430 MtrunA17_Chr4g0076011 46.517 402 191 4 148 529 74 471 1.68e-117 355
Msa0499430 MtrunA17_Chr2g0290961 38.182 440 249 10 97 529 242 665 7.37e-97 307
Msa0499430 MtrunA17_Chr2g0283461 37.717 403 236 6 127 527 141 530 5.85e-95 298
Msa0499430 MtrunA17_Chr8g0351091 38.404 401 223 7 136 529 227 610 3.82e-94 299
Msa0499430 MtrunA17_Chr8g0383241 37.671 438 251 11 97 529 69 489 1.19e-93 294
Msa0499430 MtrunA17_Chr4g0061711 36.952 433 247 12 103 527 118 532 8.98e-89 283
Msa0499430 MtrunA17_Chr7g0246371 38.393 448 239 12 97 529 237 662 1.01e-88 286
Msa0499430 MtrunA17_Chr3g0138381 38.579 394 218 7 143 529 287 663 2.09e-88 285
Msa0499430 MtrunA17_Chr2g0308241 36.343 432 255 10 103 529 118 534 2.86e-85 273
Msa0499430 MtrunA17_Chr7g0235161 38.520 392 218 7 143 527 181 556 8.13e-83 268
Msa0499430 MtrunA17_Chr6g0456071 37.500 392 221 10 143 527 177 551 3.91e-78 255
Msa0499430 MtrunA17_Chr2g0277591 34.158 404 225 7 127 527 141 506 4.63e-78 254
Msa0499430 MtrunA17_Chr7g0260711 33.249 394 229 5 136 529 293 652 4.66e-72 242
Msa0499430 MtrunA17_Chr1g0184751 31.969 391 234 5 139 529 239 597 3.37e-62 214
Msa0499430 MtrunA17_Chr7g0245621 30.155 388 244 7 143 529 282 643 5.09e-52 187
Msa0499430 MtrunA17_Chr4g0076331 34.597 211 94 6 324 529 1 172 9.62e-30 115
Msa0499430 MtrunA17_Chr4g0066331 29.319 191 109 7 325 504 145 320 8.56e-22 96.7
Msa0499430 MtrunA17_Chr3g0127611 27.778 216 128 8 301 504 115 314 1.21e-19 90.5
Msa0499430 MtrunA17_Chr7g0259321 26.000 200 121 7 316 504 142 325 7.77e-18 85.1
Msa0499430 MtrunA17_Chr7g0269751 26.415 212 128 8 301 501 136 330 7.99e-17 82.0
Msa0499430 MtrunA17_Chr5g0414981 24.839 310 176 12 209 504 89 355 3.29e-15 77.8
Msa0499430 MtrunA17_Chr1g0154521 21.927 301 179 9 215 504 86 341 4.57e-14 73.9
Msa0499430 MtrunA17_Chr1g0196511 27.749 191 111 7 325 504 154 328 7.83e-14 73.2
Msa0499430 MtrunA17_Chr8g0373671 26.531 196 110 9 325 504 142 319 8.15e-14 72.8
Msa0499430 MtrunA17_Chr6g0451981 28.272 191 125 6 316 501 156 339 1.15e-13 72.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0499430 AT3G58790.1 59.524 546 200 7 1 531 1 540 0.0 637
Msa0499430 AT3G58790.2 62.808 406 141 2 134 531 5 408 0.0 541
Msa0499430 AT5G15470.1 46.047 506 254 5 41 530 29 531 1.59e-151 444
Msa0499430 AT3G01040.2 45.850 506 255 5 41 530 29 531 8.09e-150 440
Msa0499430 AT3G01040.3 45.850 506 255 5 41 530 29 531 8.09e-150 440
Msa0499430 AT5G54690.1 44.255 470 238 5 79 529 68 532 2.88e-133 398
Msa0499430 AT3G01040.1 43.145 496 250 5 41 530 29 498 1.36e-131 392
Msa0499430 AT5G47780.1 40.000 405 225 6 127 529 226 614 1.70e-100 316
Msa0499430 AT3G61130.1 38.025 405 234 5 127 529 282 671 1.48e-95 305
Msa0499430 AT4G38270.2 39.055 402 223 7 136 529 287 674 1.23e-92 297
Msa0499430 AT4G38270.1 39.055 402 223 7 136 529 291 678 1.63e-92 297
Msa0499430 AT1G18580.1 37.845 399 224 8 136 527 153 534 7.47e-91 288
Msa0499430 AT3G25140.1 38.889 396 211 7 143 527 180 555 1.80e-90 288
Msa0499430 AT2G20810.1 37.531 405 236 7 127 527 142 533 9.64e-82 265
Msa0499430 AT2G46480.3 37.755 392 226 6 143 530 162 539 1.19e-79 259
Msa0499430 AT2G46480.4 37.755 392 226 6 143 530 175 552 3.00e-79 259
Msa0499430 AT3G02350.1 38.974 390 218 7 143 527 183 557 1.78e-75 249
Msa0499430 AT2G46480.2 35.204 392 211 6 143 530 162 514 3.61e-71 236
Msa0499430 AT2G46480.1 35.204 392 211 6 143 530 175 527 4.37e-71 236
Msa0499430 AT2G30575.1 35.025 394 217 9 139 529 251 608 1.18e-70 237
Msa0499430 AT1G06780.2 32.029 409 238 7 125 529 228 600 6.53e-66 224
Msa0499430 AT1G06780.1 32.029 409 238 7 125 529 215 587 7.95e-66 224
Msa0499430 AT2G38650.2 32.653 392 224 8 143 529 261 617 4.78e-55 196
Msa0499430 AT2G38650.1 32.653 392 224 8 143 529 261 617 4.78e-55 196
Msa0499430 AT2G38650.3 33.333 297 162 6 143 434 261 526 5.08e-35 138
Msa0499430 AT3G62660.1 24.920 313 173 13 205 504 75 338 3.66e-19 89.7
Msa0499430 AT4G02130.3 25.159 314 170 13 207 504 60 324 4.23e-19 89.4
Msa0499430 AT4G02130.1 25.159 314 170 13 207 504 60 324 4.23e-19 89.4
Msa0499430 AT4G02130.2 25.159 314 170 13 207 504 60 324 4.23e-19 89.4
Msa0499430 AT3G06260.1 25.234 214 132 8 303 504 127 324 7.75e-17 82.4
Msa0499430 AT1G02720.1 23.899 318 173 13 205 504 73 339 2.70e-16 80.9
Msa0499430 AT1G02720.2 23.899 318 173 13 205 504 73 339 2.70e-16 80.9
Msa0499430 AT3G28340.1 24.333 300 188 9 209 504 67 331 6.14e-16 80.1
Msa0499430 AT1G70090.1 25.909 220 135 8 297 504 141 344 7.26e-16 80.1
Msa0499430 AT1G70090.2 25.909 220 135 8 297 504 141 344 7.26e-16 80.1
Msa0499430 AT1G24170.1 22.508 311 184 11 208 504 80 347 1.78e-14 75.9
Msa0499430 AT1G13250.1 23.323 313 173 11 209 504 56 318 4.44e-14 73.9

Find 147 sgRNAs with CRISPR-Local

Find 444 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAATGCTTGTGACTGATTT+AGG 0.165480 3_4:-38002814 Msa0499430:CDS
TGGAAACTAATCACTTAATT+TGG 0.212659 3_4:-38004013 Msa0499430:CDS
GCAAAACCATGGCTTGAAAT+TGG 0.226164 3_4:-38002718 Msa0499430:CDS
TCCCAGAGTATCGAAGTTTA+TGG 0.233325 3_4:-38002693 Msa0499430:CDS
CCTTCCTTGATTGCATTTGA+TGG 0.254254 3_4:-38002859 Msa0499430:CDS
TTGTGGGACGTAGATCTTAA+TGG 0.263561 3_4:-38003702 Msa0499430:CDS
ATAGTAATTTGAACGCTTTA+CGG 0.297616 3_4:-38003956 Msa0499430:CDS
ATACGGAGATGTAGAATTAT+AGG 0.310252 3_4:-38002640 Msa0499430:CDS
GATACATAAACTAAATTTGA+TGG 0.325481 3_4:+38002238 None:intergenic
TTCACTCCGGACGGTGCTTC+CGG 0.326076 3_4:-38009757 Msa0499430:CDS
TGAATTCGCTTCTCGCCTTT+CGG 0.326659 3_4:-38004285 Msa0499430:CDS
AACAGCAGGAGTCAGTTTAT+TGG 0.339669 3_4:-38004412 Msa0499430:CDS
TTACAAGTTTCAACCATTTC+CGG 0.340859 3_4:+38003487 None:intergenic
ATCAGCTGTTGTTGAAGTTA+AGG 0.348935 3_4:-38004090 Msa0499430:CDS
TAGTTCATGTATTTACTTCC+AGG 0.352997 3_4:+38003630 None:intergenic
ATGTTCAATTATATTTATCT+TGG 0.355650 3_4:-38002102 Msa0499430:three_prime_UTR
GACAAAGACAGTGTAAACTA+TGG 0.359297 3_4:+38004366 None:intergenic
TTTCTTCAGACCAATCATAT+TGG 0.366193 3_4:+38004060 None:intergenic
TACGGAGATGTAGAATTATA+GGG 0.369509 3_4:-38002639 Msa0499430:CDS
CCCAGAGTATCGAAGTTTAT+GGG 0.373450 3_4:-38002692 Msa0499430:CDS
AAATCAGTCACAAGCATTGA+TGG 0.380994 3_4:+38002817 None:intergenic
ACTTCTCTAATAAGTTTATA+CGG 0.382222 3_4:-38002657 Msa0499430:CDS
ACTCTCCTTGCTAATTTCTT+CGG 0.388314 3_4:+38002777 None:intergenic
GAAAGGCGAGAAGCGAATTC+AGG 0.388871 3_4:+38004287 None:intergenic
TTGATACCGTGTTGGATTAG+AGG 0.391376 3_4:-38002568 Msa0499430:three_prime_UTR
TCAGCTGTTGTTGAAGTTAA+GGG 0.393864 3_4:-38004089 Msa0499430:CDS
AACAGCTGATTCAACAGAAT+TGG 0.397737 3_4:+38004103 None:intergenic
AAATTTATATACCATGGCTT+TGG 0.402656 3_4:+38005438 None:intergenic
TGAGCTAACCAGAGCGCTAA+TGG 0.406725 3_4:-38005566 Msa0499430:CDS
CCCCATAAACTTCGATACTC+TGG 0.408924 3_4:+38002691 None:intergenic
AGTCTTGTAAGTACCTTTGT+TGG 0.410763 3_4:-38002263 Msa0499430:three_prime_UTR
GTTTCACAGAACCTCAAGTC+TGG 0.411046 3_4:-38002913 Msa0499430:intron
GAACAATGTGGGTGGCTCTA+TGG 0.411219 3_4:-38003564 Msa0499430:CDS
CTTCCGGTGGTGTTAGTGCT+TGG 0.419201 3_4:-38009741 Msa0499430:CDS
TAACAGAGACCTACCGGAAA+TGG 0.427059 3_4:-38003500 Msa0499430:CDS
GATAGCAGTTAATGGAATCA+AGG 0.428602 3_4:-38009916 Msa0499430:five_prime_UTR
ACATGACATATCTTCTTTGT+GGG 0.432071 3_4:-38003718 Msa0499430:CDS
TCTTGAAAGCAAAAGCTTTG+AGG 0.433058 3_4:+38005461 None:intergenic
AGGGATTGCACCAATATGAT+TGG 0.438241 3_4:-38004070 Msa0499430:CDS
GTGGTTCAGTATTCAAGTCT+TGG 0.440559 3_4:-38003671 Msa0499430:CDS
ATTTGCTTCCATTAGCGCTC+TGG 0.443976 3_4:+38005558 None:intergenic
CGGCAAGGACATTATCAGTT+AGG 0.448076 3_4:+38004237 None:intergenic
ACAAGCATTGATGGATCTAT+AGG 0.448485 3_4:+38002826 None:intergenic
AACATGACATATCTTCTTTG+TGG 0.449268 3_4:-38003719 Msa0499430:CDS
ACACTGTCTTTGTCTTAAGT+TGG 0.450596 3_4:-38004357 Msa0499430:CDS
AGAACTAGGTGATGAAGAGT+AGG 0.452998 3_4:+38004260 None:intergenic
CCGACTGTTAGTGGTTCTTC+CGG 0.453251 3_4:-38009789 Msa0499430:CDS
ACGACGACGGCGGCGGGAGG+AGG 0.463399 3_4:-38009816 Msa0499430:CDS
GATACAACGACGACGGCGGC+GGG 0.465061 3_4:-38009822 Msa0499430:CDS
TTCCGGTGGTGTTAGTGCTT+GGG 0.465325 3_4:-38009740 Msa0499430:CDS
CTTATGCTTCAATGCATGCT+TGG 0.468781 3_4:-38004133 Msa0499430:CDS
CATTATCAGTTAGGAGAACT+AGG 0.475117 3_4:+38004246 None:intergenic
GGGACAGCACTGTGGAATCC+AGG 0.479503 3_4:-38002892 Msa0499430:CDS
AAGGAAGGTGGAAGAACTCC+TGG 0.480547 3_4:+38002874 None:intergenic
GCACCGTCCGGAGTGAAATC+CGG 0.484080 3_4:+38009763 None:intergenic
TGTGAAGACAAGTGCTGCCC+TGG 0.497943 3_4:-38003648 Msa0499430:CDS
TTGCAGAATGTGCTGGGTGG+AGG 0.498368 3_4:-38009030 Msa0499430:intron
TGCTGGTGTTAAAGAGATGC+TGG 0.500875 3_4:-38004033 Msa0499430:CDS
GGATACAACGACGACGGCGG+CGG 0.502496 3_4:-38009823 Msa0499430:CDS
CTGCAGATACTGCTTCTAGT+AGG 0.502823 3_4:+38002433 None:intergenic
AGTAACAATATCAAACGGTA+AGG 0.504916 3_4:-38009856 Msa0499430:CDS
GGAGAGTCTAGAAGCTGCTT+CGG 0.505777 3_4:-38002761 Msa0499430:CDS
GGAGGAAGTCCGACTGTTAG+TGG 0.507681 3_4:-38009798 Msa0499430:CDS
CCCATAAACTTCGATACTCT+GGG 0.507749 3_4:+38002692 None:intergenic
GGGAAACCAATTTCAAGCCA+TGG 0.508346 3_4:+38002712 None:intergenic
TGATACCGTGTTGGATTAGA+GGG 0.511229 3_4:-38002567 Msa0499430:three_prime_UTR
GGTAATATTAATGATAATGA+AGG 0.512465 3_4:-38005532 Msa0499430:CDS
ATGACTGTTGCAGAATGTGC+TGG 0.512673 3_4:-38009037 Msa0499430:intron
ACAAAGACAGTGTAAACTAT+GGG 0.516741 3_4:+38004367 None:intergenic
TTGGCCATCAAATGCAATCA+AGG 0.517676 3_4:+38002855 None:intergenic
AAGCGAATTCAGGAGGAGGC+AGG 0.518296 3_4:+38004297 None:intergenic
AGCTGATTCAACAGAATTGG+TGG 0.518950 3_4:+38004106 None:intergenic
CGGGCATATAAATGCGGAGT+TGG 0.519013 3_4:+38003910 None:intergenic
TTAGTGGTTCTTCCGGTCGC+CGG 0.519889 3_4:-38009782 Msa0499430:CDS
GCAGTATCTGCAGTTAAGAA+AGG 0.525665 3_4:-38002423 Msa0499430:three_prime_UTR
CCGGAGTGAAATCCGGCGAC+CGG 0.533686 3_4:+38009770 None:intergenic
ACACCACCGGAAGCACCGTC+CGG 0.539068 3_4:+38009751 None:intergenic
AAACGGTAAGGGATCGGCGA+AGG 0.543149 3_4:-38009844 Msa0499430:CDS
GAATTTAGTTCGAGATCTGA+AGG 0.543201 3_4:+38009970 None:intergenic
TTGCATCATTGATACCGTGT+TGG 0.544456 3_4:-38002576 Msa0499430:three_prime_UTR
TGCTTTCAAGACCAAAGCCA+TGG 0.552072 3_4:-38005449 Msa0499430:intron
GCTTCGGTTATCCATTTCAG+TGG 0.552617 3_4:-38002745 Msa0499430:CDS
AGTTCATGTATTTACTTCCA+GGG 0.552622 3_4:+38003631 None:intergenic
ACAACGACGACGGCGGCGGG+AGG 0.552875 3_4:-38009819 Msa0499430:CDS
CAGTGGAGCTGACACGTCAC+TGG 0.553124 3_4:-38009002 Msa0499430:intron
AAATTTGATGGTTCCAACAA+AGG 0.557588 3_4:+38002250 None:intergenic
AAACGAGTAACAATATCAAA+CGG 0.560338 3_4:-38009861 Msa0499430:CDS
GCGCTAATGGAAGCAAATGA+TGG 0.561227 3_4:-38005553 Msa0499430:CDS
ATGGATCTATAGGATGTACT+TGG 0.564930 3_4:+38002836 None:intergenic
GTTTCGACATTTCAATGAGA+CGG 0.565348 3_4:-38002337 Msa0499430:three_prime_UTR
GAAAGAGAGAAGAGAGTGTG+AGG 0.566791 3_4:+38010070 None:intergenic
AATATCAAACGGTAAGGGAT+CGG 0.573049 3_4:-38009850 Msa0499430:CDS
ACAGTGCTGTCCCAGACTTG+AGG 0.575252 3_4:+38002902 None:intergenic
GCTTCTAGTAGGATACTGCT+TGG 0.577540 3_4:+38002444 None:intergenic
GCAATCTTAATGAATATTTG+AGG 0.587237 3_4:+38002595 None:intergenic
ATGTATTAGATCTTGATGCT+TGG 0.588082 3_4:-38003536 Msa0499430:CDS
CGAGAAGCGAATTCAGGAGG+AGG 0.590483 3_4:+38004293 None:intergenic
ATCTTAATGAATATTTGAGG+TGG 0.590948 3_4:+38002598 None:intergenic
CAATGAACTTGTGAAAGAGA+TGG 0.591189 3_4:-38005497 Msa0499430:CDS
GGAGTTGGTTCATCAAAGAA+AGG 0.592445 3_4:+38003925 None:intergenic
AGTTCGAGATCTGAAGGTGA+AGG 0.593298 3_4:+38009976 None:intergenic
TTTCACAGAACCTCAAGTCT+GGG 0.593577 3_4:-38002912 Msa0499430:intron
CCGGTCGCCGGATTTCACTC+CGG 0.594389 3_4:-38009770 Msa0499430:CDS
CCAGAGTATCGAAGTTTATG+GGG 0.594965 3_4:-38002691 Msa0499430:CDS
CCATCAAATGCAATCAAGGA+AGG 0.595079 3_4:+38002859 None:intergenic
CAAACATAACAGAGACCTAC+CGG 0.596268 3_4:-38003506 Msa0499430:CDS
GAACTAGGTGATGAAGAGTA+GGG 0.597651 3_4:+38004261 None:intergenic
AGTTTCGACGGTGAACAATG+TGG 0.598991 3_4:-38003576 Msa0499430:CDS
ACTCCGGACGGTGCTTCCGG+TGG 0.600790 3_4:-38009754 Msa0499430:CDS
ACATATTCAGCTATCACAGA+TGG 0.602042 3_4:-38004456 Msa0499430:intron
CTACAACAACAGAGGCGGCA+AGG 0.605369 3_4:+38004222 None:intergenic
ATCCCAAGCACTAACACCAC+CGG 0.605798 3_4:+38009738 None:intergenic
TCGCCGGATTTCACTCCGGA+CGG 0.606898 3_4:-38009766 Msa0499430:CDS
CTCATATCATCGAGTTTCGA+CGG 0.608121 3_4:-38003588 Msa0499430:CDS
TCAAATGCAATCAAGGAAGG+TGG 0.610825 3_4:+38002862 None:intergenic
TATATATATGATTATGAACA+TGG 0.615246 3_4:+38002484 None:intergenic
AAGTTTCAACCATTTCCGGT+AGG 0.619038 3_4:+38003491 None:intergenic
GATGAAGAGTAGGGTCCGAA+AGG 0.619172 3_4:+38004270 None:intergenic
TCAGTGGCCCTGCAAAACCA+TGG 0.619976 3_4:-38002729 Msa0499430:CDS
GAAGGATACAACGACGACGG+CGG 0.621279 3_4:-38009826 Msa0499430:CDS
GTTTCGACGGTGAACAATGT+GGG 0.622090 3_4:-38003575 Msa0499430:CDS
GATCTTAATGGCAAAGTCAG+TGG 0.623090 3_4:-38003690 Msa0499430:CDS
AGAATATGCTGTAAATGCCA+TGG 0.625638 3_4:-38004330 Msa0499430:CDS
TGGTCTGAAGAAATGAATGC+TGG 0.626137 3_4:-38004050 Msa0499430:CDS
GGTGCAAACAGCAAAACAGC+AGG 0.626377 3_4:-38004426 Msa0499430:CDS
AGGCAGGCGAGATCGAGCCA+TGG 0.627139 3_4:+38004313 None:intergenic
TTCATCAAAGAAAGGCTGCT+AGG 0.629361 3_4:+38003933 None:intergenic
GTAACAATATCAAACGGTAA+GGG 0.634534 3_4:-38009855 Msa0499430:CDS
AGGCGAGAAGCGAATTCAGG+AGG 0.636030 3_4:+38004290 None:intergenic
TGACTGTTGCAGAATGTGCT+GGG 0.636790 3_4:-38009036 Msa0499430:intron
ACGTATGAATCAGAGACTGA+AGG 0.647107 3_4:+38002532 None:intergenic
GGAGGCTACAACAACAGAGG+CGG 0.664388 3_4:+38004217 None:intergenic
TATTGGCATCTAGCATCACA+TGG 0.669757 3_4:-38004395 Msa0499430:CDS
TTACCTCGGGCATATAAATG+CGG 0.671819 3_4:+38003904 None:intergenic
TAATTCCGAAGAAATTAGCA+AGG 0.672624 3_4:-38002782 Msa0499430:CDS
TCGAAACTCGATGATATGAG+AGG 0.672946 3_4:+38003591 None:intergenic
TGAGACGGTTATAAGACACT+AGG 0.674151 3_4:-38002322 Msa0499430:three_prime_UTR
CCGGAAGAACCACTAACAGT+CGG 0.676034 3_4:+38009789 None:intergenic
GGCGAAGGATACAACGACGA+CGG 0.681059 3_4:-38009829 Msa0499430:CDS
GCTATCACAGATGGAACACA+AGG 0.685282 3_4:-38004447 Msa0499430:CDS
TCAAGTCTGGGACAGCACTG+TGG 0.688056 3_4:-38002900 Msa0499430:CDS
CAAAGACAGTGTAAACTATG+GGG 0.690274 3_4:+38004368 None:intergenic
TCGACGGTGAACAATGTGGG+TGG 0.692704 3_4:-38003572 Msa0499430:CDS
TTCTTCCCTCTAATCCAACA+CGG 0.697844 3_4:+38002562 None:intergenic
CTGTTGCAGAATGTGCTGGG+TGG 0.708910 3_4:-38009033 Msa0499430:intron
ACTCCGCATTTATATGCCCG+AGG 0.710410 3_4:-38003907 Msa0499430:intron
CGTGGAGGCTACAACAACAG+AGG 0.713906 3_4:+38004214 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTTTTATTTAATATTTT+GGG + chr3_4:38003029-38003048 None:intergenic 0.0%
!!! AATATTTTTATTTAATATTT+TGG + chr3_4:38003030-38003049 None:intergenic 0.0%
!!! AAATAATTTCATTTCTTTTT+AGG - chr3_4:38002914-38002933 Msa0499430:intron 10.0%
!! AATATTTGTCAAAAAATTTA+AGG - chr3_4:38003044-38003063 Msa0499430:intron 10.0%
!!! AAATCTTTTGATTTTTAAAA+AGG - chr3_4:38004140-38004159 Msa0499430:CDS 10.0%
!!! TAAATTTTTTTTGTAGTTTT+TGG + chr3_4:38004240-38004259 None:intergenic 10.0%
!! TAAAAACACTTAAAAAAAAT+AGG + chr3_4:38004317-38004336 None:intergenic 10.0%
!! AATGTAAAAAATATTTACAT+TGG - chr3_4:38005079-38005098 Msa0499430:intron 10.0%
!! AACTAAATTAAAGATATAAT+AGG + chr3_4:38005274-38005293 None:intergenic 10.0%
!! TTTGTTAGATTAATTAATAT+TGG - chr3_4:38005603-38005622 Msa0499430:intron 10.0%
!! TTGTTAGATTAATTAATATT+GGG - chr3_4:38005604-38005623 Msa0499430:intron 10.0%
!! TTTAATTAAAATATACAAGT+TGG + chr3_4:38006539-38006558 None:intergenic 10.0%
!!! GTATATAAATTTTTTACTTT+TGG - chr3_4:38006758-38006777 Msa0499430:intron 10.0%
!! AATTATGAAAAAATGCAAAA+AGG + chr3_4:38002627-38002646 None:intergenic 15.0%
!!! TTTTGCATTTTTTCATAATT+TGG - chr3_4:38002627-38002646 Msa0499430:exon 15.0%
!!! ACTTTTTTAAGATAAATGAA+TGG + chr3_4:38002863-38002882 None:intergenic 15.0%
!!! ATTTAAGGAAAAAGATTTTA+TGG - chr3_4:38003059-38003078 Msa0499430:intron 15.0%
!!! TTTATGGAATTTTATGAAAT+AGG - chr3_4:38003075-38003094 Msa0499430:intron 15.0%
!! ATAATAATACAATGTCAAAT+TGG - chr3_4:38003662-38003681 Msa0499430:CDS 15.0%
!!! TTAATTTCGAGATATTTTTT+TGG - chr3_4:38003929-38003948 Msa0499430:CDS 15.0%
!!! ATATTTTTTTGGCTAAAATA+TGG - chr3_4:38003940-38003959 Msa0499430:CDS 15.0%
!!! AACAACAAAAAAATTTTACA+GGG + chr3_4:38004004-38004023 None:intergenic 15.0%
!!! AAACAACAAAAAAATTTTAC+AGG + chr3_4:38004005-38004024 None:intergenic 15.0%
!! AACTACAAAAAAAATTTACA+TGG - chr3_4:38004242-38004261 Msa0499430:CDS 15.0%
!! AAAAAAAATAGGCTAAAATA+TGG + chr3_4:38004306-38004325 None:intergenic 15.0%
!! TGTGAATTTAATGATAAATA+AGG + chr3_4:38004502-38004521 None:intergenic 15.0%
!! ATAACTACTTTAATAGTTTA+TGG - chr3_4:38004540-38004559 Msa0499430:intron 15.0%
!!! ATTTTTCTTTTACCAATTTT+TGG + chr3_4:38005799-38005818 None:intergenic 15.0%
!! AAACAAATCAATTACATAAA+TGG + chr3_4:38006216-38006235 None:intergenic 15.0%
!! AGTAAAAAATTTATATACCA+TGG + chr3_4:38006756-38006775 None:intergenic 15.0%
!!! CATTATTAGTTTAATTGATT+TGG + chr3_4:38006888-38006907 None:intergenic 15.0%
!! AAATATTAAAAGATCAAAAC+AGG + chr3_4:38007097-38007116 None:intergenic 15.0%
!!! ATATGAAAAACTAATTTTTG+AGG + chr3_4:38008015-38008034 None:intergenic 15.0%
!! ATTACTTATTATTCAATCAA+AGG + chr3_4:38008324-38008343 None:intergenic 15.0%
!! TATGTTAAGAAATATGAATA+GGG - chr3_4:38008876-38008895 Msa0499430:intron 15.0%
!!! TTATTTATTTGATAATGGTA+CGG - chr3_4:38009218-38009237 Msa0499430:intron 15.0%
!! TATATATATGATTATGAACA+TGG + chr3_4:38009704-38009723 None:intergenic 15.0%
!! ATGTTCAATTATATTTATCT+TGG - chr3_4:38010083-38010102 Msa0499430:five_prime_UTR 15.0%
!!! TTACTATTTTTTCACATTCA+AGG - chr3_4:38002681-38002700 Msa0499430:CDS 20.0%
!! TATTATTATGGAGTTAAAAC+AGG - chr3_4:38002773-38002792 Msa0499430:CDS 20.0%
!! TAACATCAACTTTATGATAA+AGG + chr3_4:38003110-38003129 None:intergenic 20.0%
!! ATTATATTGTCTAATTCTTG+TGG - chr3_4:38003624-38003643 Msa0499430:CDS 20.0%
!! TTATATTGTCTAATTCTTGT+GGG - chr3_4:38003625-38003644 Msa0499430:CDS 20.0%
!! CAATTATTACAAATTTGTCA+CGG - chr3_4:38003685-38003704 Msa0499430:CDS 20.0%
!! TGATTATCTACAATTTATGA+AGG - chr3_4:38003731-38003750 Msa0499430:CDS 20.0%
!!! AAAAATCAAAAGATTTTGCA+GGG + chr3_4:38004136-38004155 None:intergenic 20.0%
!!! TAAAAATCAAAAGATTTTGC+AGG + chr3_4:38004137-38004156 None:intergenic 20.0%
!!! CAAAAACAAAATATTTTGCA+GGG + chr3_4:38004213-38004232 None:intergenic 20.0%
!!! TCAAAAACAAAATATTTTGC+AGG + chr3_4:38004212-38004231 None:intergenic 20.0%
!!! TCAAAAACAAAATATTTTGC+AGG - chr3_4:38004212-38004231 Msa0499430:CDS 20.0%
!!! CAAAAACAAAATATTTTGCA+GGG - chr3_4:38004213-38004232 Msa0499430:CDS 20.0%
!! ATTAAAGTAGTTATGATCTT+TGG + chr3_4:38004534-38004553 None:intergenic 20.0%
!! CACTAAAACATCAAAAAATT+TGG - chr3_4:38004605-38004624 Msa0499430:intron 20.0%
!! TTTAACATTGAAAAAAGAGT+TGG + chr3_4:38004784-38004803 None:intergenic 20.0%
!! GTAAAAAATATTTACATTGG+CGG - chr3_4:38005082-38005101 Msa0499430:intron 20.0%
!! GTCTAACTATATATTAAACA+TGG - chr3_4:38005155-38005174 Msa0499430:intron 20.0%
!!! TTAGTTCTCTTTTTTTTTGT+TGG - chr3_4:38005288-38005307 Msa0499430:intron 20.0%
!! TAATAAGAGTAAAAGACAAA+AGG - chr3_4:38005440-38005459 Msa0499430:intron 20.0%
!! TGTGGTATGTTTATTATAAT+GGG + chr3_4:38005500-38005519 None:intergenic 20.0%
!! ATGTGGTATGTTTATTATAA+TGG + chr3_4:38005501-38005520 None:intergenic 20.0%
!! TTAGATTAATTAATATTGGG+TGG - chr3_4:38005607-38005626 Msa0499430:intron 20.0%
!!! ACACAAGATTAATTTTGTTT+TGG + chr3_4:38005640-38005659 None:intergenic 20.0%
!!! AATTTTTGGAAAGTATTATC+TGG + chr3_4:38005785-38005804 None:intergenic 20.0%
!! AGATAATACTTTCCAAAAAT+TGG - chr3_4:38005784-38005803 Msa0499430:intron 20.0%
!!! ATCTTTCTTTGTTTTACTTT+GGG - chr3_4:38006152-38006171 Msa0499430:intron 20.0%
!! ATTACATAAATGGTATTAGT+TGG + chr3_4:38006206-38006225 None:intergenic 20.0%
!!! TTAATCAACTAAGACAATTT+TGG - chr3_4:38006283-38006302 Msa0499430:intron 20.0%
!! ACTATCAAAATTGATTGAAT+TGG + chr3_4:38006429-38006448 None:intergenic 20.0%
!!! GGTAATATTAATGATAATGA+AGG - chr3_4:38006653-38006672 Msa0499430:intron 20.0%
!!! ATTCTTTATTGTTTCCTTTT+GGG - chr3_4:38006824-38006843 Msa0499430:intron 20.0%
!!! ACTAATAATGATAATGCATT+AGG - chr3_4:38006898-38006917 Msa0499430:intron 20.0%
!!! TCAACAAAGATATTCATTTT+CGG + chr3_4:38007395-38007414 None:intergenic 20.0%
!! CCTGTATTAATTTAAGAAAA+TGG + chr3_4:38007561-38007580 None:intergenic 20.0%
!!! CCATTTTCTTAAATTAATAC+AGG - chr3_4:38007558-38007577 Msa0499430:intron 20.0%
!! ACATTGTATAAAAAAACACT+CGG + chr3_4:38008841-38008860 None:intergenic 20.0%
!! CTATGTTAAGAAATATGAAT+AGG - chr3_4:38008875-38008894 Msa0499430:intron 20.0%
!!! TTCTAAATAGTGTTTTATAC+AGG + chr3_4:38008929-38008948 None:intergenic 20.0%
!!! TTATCTTTTCAACAAATCTT+TGG - chr3_4:38009024-38009043 Msa0499430:CDS 20.0%
!! GTAAACCAAGATATAATTAA+GGG - chr3_4:38009055-38009074 Msa0499430:intron 20.0%
!! ATTTACCCTTAATTATATCT+TGG + chr3_4:38009063-38009082 None:intergenic 20.0%
!! AAGATATAATTAAGGGTAAA+TGG - chr3_4:38009062-38009081 Msa0499430:intron 20.0%
!!! GAGTACTGTATAATATATAT+AGG - chr3_4:38009122-38009141 Msa0499430:intron 20.0%
!!! ATATATAGGTTCCATAATTT+TGG - chr3_4:38009136-38009155 Msa0499430:intron 20.0%
!!! TATATAGGTTCCATAATTTT+GGG - chr3_4:38009137-38009156 Msa0499430:intron 20.0%
!! CTGCATTATTTATTTGATAA+TGG - chr3_4:38009213-38009232 Msa0499430:intron 20.0%
!! ATTAACATTACGTATTTATC+TGG - chr3_4:38009250-38009269 Msa0499430:intron 20.0%
!! ACTTCTCTAATAAGTTTATA+CGG - chr3_4:38009528-38009547 Msa0499430:intron 20.0%
!!! CTGTAAATTTGATTTTGAAA+TGG - chr3_4:38009818-38009837 Msa0499430:CDS 20.0%
!! GATACATAAACTAAATTTGA+TGG + chr3_4:38009950-38009969 None:intergenic 20.0%
!! AAGTTTTACATATCAGCAAA+GGG - chr3_4:38002297-38002316 Msa0499430:three_prime_UTR 25.0%
! AAACGAGTAACAATATCAAA+CGG - chr3_4:38002324-38002343 Msa0499430:three_prime_UTR 25.0%
!! GGTAACTGAGTAAATTTTAA+CGG - chr3_4:38002576-38002595 Msa0499430:three_prime_UTR 25.0%
! TTAAAACAGGAGATTATAGT+TGG - chr3_4:38002786-38002805 Msa0499430:CDS 25.0%
!!! TGCAATTTGTTAACAAAACA+CGG + chr3_4:38003510-38003529 None:intergenic 25.0%
!!! ATTTATGAAGGTTTTGAGTT+TGG - chr3_4:38003743-38003762 Msa0499430:CDS 25.0%
!!! AATGTTTTTTTCCACACTTT+TGG - chr3_4:38003805-38003824 Msa0499430:intron 25.0%
!!! TTTTGGCTAAAATATGGTTT+TGG - chr3_4:38003946-38003965 Msa0499430:CDS 25.0%
!!! GGGACTATTTTTCTAATAAA+TGG + chr3_4:38004116-38004135 None:intergenic 25.0%
! AGCTAAAACATCAAAAGAAA+GGG + chr3_4:38004415-38004434 None:intergenic 25.0%
!!! CTCTAAAACATCAAAAGAAA+TGG - chr3_4:38004641-38004660 Msa0499430:intron 25.0%
! AAACATCAAAAGAAATGGAA+TGG - chr3_4:38004646-38004665 Msa0499430:intron 25.0%
!! AAAGTAGGATTATATGGTTT+TGG + chr3_4:38004700-38004719 None:intergenic 25.0%
!!! CAAGATTTTTTGTTGTTGAA+AGG + chr3_4:38004728-38004747 None:intergenic 25.0%
! ACTAACTTTGATACTTGATA+TGG + chr3_4:38004820-38004839 None:intergenic 25.0%
! CGGTGTATAAATTTATACTA+TGG - chr3_4:38005102-38005121 Msa0499430:intron 25.0%
!!! TATGTTTATTATAATGGGTC+AGG + chr3_4:38005495-38005514 None:intergenic 25.0%
!! ATCTCGTATATTTTTCTTGA+AGG - chr3_4:38005538-38005557 Msa0499430:CDS 25.0%
!! TCTCGTATATTTTTCTTGAA+GGG - chr3_4:38005539-38005558 Msa0499430:CDS 25.0%
!! TTTTTCTTGAAGGGATTATT+AGG - chr3_4:38005548-38005567 Msa0499430:CDS 25.0%
! TGCTTATCTATTTCAGTTAA+AGG - chr3_4:38005659-38005678 Msa0499430:intron 25.0%
! GCTTATCTATTTCAGTTAAA+GGG - chr3_4:38005660-38005679 Msa0499430:intron 25.0%
!! AAAAAAGCATGACATTGTTT+GGG - chr3_4:38005826-38005845 Msa0499430:intron 25.0%
!!! GTGTTTTTTTACACACATTA+TGG - chr3_4:38005869-38005888 Msa0499430:intron 25.0%
!!! TTTTTTACACACATTATGGA+AGG - chr3_4:38005873-38005892 Msa0499430:intron 25.0%
! TCTTTATACTCCTATGAAAT+TGG - chr3_4:38005967-38005986 Msa0499430:intron 25.0%
! ATAAAAACAAAGAGCAGTAT+AGG + chr3_4:38006059-38006078 None:intergenic 25.0%
!!! GATCTTTCTTTGTTTTACTT+TGG - chr3_4:38006151-38006170 Msa0499430:intron 25.0%
!! CTCTTTATTTGACAAAATCA+CGG + chr3_4:38006406-38006425 None:intergenic 25.0%
! AAATTTATATACCATGGCTT+TGG + chr3_4:38006750-38006769 None:intergenic 25.0%
!! CATTCTTTATTGTTTCCTTT+TGG - chr3_4:38006823-38006842 Msa0499430:intron 25.0%
! TTAAAAGATCAAAACAGGAT+AGG + chr3_4:38007092-38007111 None:intergenic 25.0%
! TGAAAATAACCGATACTTAA+GGG + chr3_4:38007171-38007190 None:intergenic 25.0%
! GTATACTATATTGAACAATG+TGG - chr3_4:38007263-38007282 Msa0499430:intron 25.0%
!!! TATTGAGTTTTAAACCACAA+AGG - chr3_4:38007304-38007323 Msa0499430:intron 25.0%
!!! ATTGAGTTTTAAACCACAAA+GGG - chr3_4:38007305-38007324 Msa0499430:intron 25.0%
! TTGAATATAACTACATGTGT+CGG + chr3_4:38007533-38007552 None:intergenic 25.0%
!!! TGAAGCATAAGTTTTTTTGT+CGG + chr3_4:38008043-38008062 None:intergenic 25.0%
! TGGAAACTAATCACTTAATT+TGG - chr3_4:38008172-38008191 Msa0499430:intron 25.0%
! ATAGTAATTTGAACGCTTTA+CGG - chr3_4:38008229-38008248 Msa0499430:intron 25.0%
!!! AATACTATCTTTTTGAGATC+TGG + chr3_4:38008423-38008442 None:intergenic 25.0%
! GGTTTAATCTTTATGCATAT+GGG + chr3_4:38008789-38008808 None:intergenic 25.0%
! TGGTTTAATCTTTATGCATA+TGG + chr3_4:38008790-38008809 None:intergenic 25.0%
! ATAAGAATTTAAACCTTTGC+TGG + chr3_4:38008810-38008829 None:intergenic 25.0%
! GGTAAACCAAGATATAATTA+AGG - chr3_4:38009054-38009073 Msa0499430:intron 25.0%
! ATCTTAATGAATATTTGAGG+TGG + chr3_4:38009590-38009609 None:intergenic 25.0%
! GCAATCTTAATGAATATTTG+AGG + chr3_4:38009593-38009612 None:intergenic 25.0%
!! GAGTTTTTGATAGCAGTTAA+TGG - chr3_4:38002261-38002280 Msa0499430:three_prime_UTR 30.0%
! GAAGTTTTACATATCAGCAA+AGG - chr3_4:38002296-38002315 Msa0499430:three_prime_UTR 30.0%
AGTAACAATATCAAACGGTA+AGG - chr3_4:38002329-38002348 Msa0499430:three_prime_UTR 30.0%
GTAACAATATCAAACGGTAA+GGG - chr3_4:38002330-38002349 Msa0499430:three_prime_UTR 30.0%
GCAACTCTAACAAAAACAAA+CGG + chr3_4:38002480-38002499 None:intergenic 30.0%
!!! TGCTACTTTTTGTTCTTCAT+TGG - chr3_4:38002518-38002537 Msa0499430:three_prime_UTR 30.0%
!!! GCTACTTTTTGTTCTTCATT+GGG - chr3_4:38002519-38002538 Msa0499430:three_prime_UTR 30.0%
!! CTGAGTAAATTTTAACGGTT+TGG - chr3_4:38002581-38002600 Msa0499430:three_prime_UTR 30.0%
!!! AAATTTTAACGGTTTGGTAG+AGG - chr3_4:38002587-38002606 Msa0499430:three_prime_UTR 30.0%
! TTTTCACATTCAAGGAAATG+AGG - chr3_4:38002689-38002708 Msa0499430:CDS 30.0%
AATATCGCATTATATATGCG+TGG - chr3_4:38002813-38002832 Msa0499430:CDS 30.0%
ATATCGCATTATATATGCGT+GGG - chr3_4:38002814-38002833 Msa0499430:CDS 30.0%
CATCAACTTTATGATAAAGG+AGG + chr3_4:38003107-38003126 None:intergenic 30.0%
!! GTTGATGTTAGTTTGTACAT+TGG - chr3_4:38003120-38003139 Msa0499430:intron 30.0%
!! TTTCCGCAACTACTTATTTT+TGG - chr3_4:38003275-38003294 Msa0499430:intron 30.0%
TGACCAAAAATAAGTAGTTG+CGG + chr3_4:38003281-38003300 None:intergenic 30.0%
GTGGTTGTTAATGAAAAGAT+AGG - chr3_4:38003432-38003451 Msa0499430:intron 30.0%
!! GCAATTTGTTAACAAAACAC+GGG + chr3_4:38003509-38003528 None:intergenic 30.0%
TGCATTAATATCCAAAAGTG+TGG + chr3_4:38003819-38003838 None:intergenic 30.0%
CTAGATCAAATGACGTTATA+AGG - chr3_4:38003875-38003894 Msa0499430:intron 30.0%
CAAAACGATACATATTTGCA+GGG + chr3_4:38004033-38004052 None:intergenic 30.0%
!!! TTGTTTTTGAAAATAGTCCC+TGG + chr3_4:38004178-38004197 None:intergenic 30.0%
ATCAAATCAAATCACTAGAC+AGG + chr3_4:38004351-38004370 None:intergenic 30.0%
AAACATCAAAAGAAAGGGAA+TGG + chr3_4:38004410-38004429 None:intergenic 30.0%
GAGCTAAAACATCAAAAGAA+AGG + chr3_4:38004416-38004435 None:intergenic 30.0%
! TTTATGGTGTTTTCCAACAA+GGG - chr3_4:38004556-38004575 Msa0499430:intron 30.0%
ATCAAAAGAAATGGAATGGA+GGG - chr3_4:38004650-38004669 Msa0499430:intron 30.0%
GAGTAGAAAGTAGGATTATA+TGG + chr3_4:38004706-38004725 None:intergenic 30.0%
TCAACTGAAATTCCAACATT+TGG + chr3_4:38004891-38004910 None:intergenic 30.0%
! ATACCACATGTCTACATTTT+TGG - chr3_4:38005512-38005531 Msa0499430:CDS 30.0%
!!! CAAACAATGTCATGCTTTTT+TGG + chr3_4:38005827-38005846 None:intergenic 30.0%
! CAAAAAAGCATGACATTGTT+TGG - chr3_4:38005825-38005844 Msa0499430:intron 30.0%
TTATTCTTCTCTGCATCAAA+AGG - chr3_4:38006121-38006140 Msa0499430:intron 30.0%
TGTCATAGAATAGAAGCAAA+TGG + chr3_4:38006179-38006198 None:intergenic 30.0%
!! TAAGACAATTTTGGCGATTT+TGG - chr3_4:38006292-38006311 Msa0499430:intron 30.0%
CGTTACTCTATACAATGATT+AGG - chr3_4:38006782-38006801 Msa0499430:intron 30.0%
!! TTTATTGTTTCCTTTTGGGT+CGG - chr3_4:38006828-38006847 Msa0499430:intron 30.0%
TTGGGATACATTATTCTGAT+TGG - chr3_4:38006966-38006985 Msa0499430:intron 30.0%
TTATTCTGATTGGATTTCTG+TGG - chr3_4:38006976-38006995 Msa0499430:intron 30.0%
CATGTAATTGATCAGAAATG+TGG - chr3_4:38007003-38007022 Msa0499430:intron 30.0%
GAAAATAACCGATACTTAAG+GGG + chr3_4:38007170-38007189 None:intergenic 30.0%
CTGAAAATAACCGATACTTA+AGG + chr3_4:38007172-38007191 None:intergenic 30.0%
! TTATTTTCAGAAATGCCATG+TGG - chr3_4:38007182-38007201 Msa0499430:intron 30.0%
ACTGATCAAATCACACAAAT+GGG - chr3_4:38007230-38007249 Msa0499430:intron 30.0%
! TTGAACAATGTGGAAGTATA+AGG - chr3_4:38007273-38007292 Msa0499430:intron 30.0%
ATGATCGTTATGAGTAACAT+TGG - chr3_4:38007345-38007364 Msa0499430:intron 30.0%
GTTATGAGTAACATTGGTAA+AGG - chr3_4:38007351-38007370 Msa0499430:intron 30.0%
! AGATATTCATTTTCGGACTT+TGG + chr3_4:38007388-38007407 None:intergenic 30.0%
CTACATAGTCTATGCATAAA+TGG + chr3_4:38007426-38007445 None:intergenic 30.0%
!! GAAATTGCATGATTTGTTAG+AGG + chr3_4:38007703-38007722 None:intergenic 30.0%
ACAAAGACAGTGTAAACTAT+GGG + chr3_4:38007821-38007840 None:intergenic 30.0%
!! ATTGAATGAATTTTCAAGCG+TGG + chr3_4:38007992-38008011 None:intergenic 30.0%
TTTCTTCAGACCAATCATAT+TGG + chr3_4:38008128-38008147 None:intergenic 30.0%
CAAGAATAACTAATTACCTC+GGG + chr3_4:38008297-38008316 None:intergenic 30.0%
CCAAGAATAACTAATTACCT+CGG + chr3_4:38008298-38008317 None:intergenic 30.0%
!! AAGCATTCAGACTTGTTATT+AGG + chr3_4:38008348-38008367 None:intergenic 30.0%
! TCATGCTGATATGATTTTTG+TGG - chr3_4:38008381-38008400 Msa0499430:intron 30.0%
AACATGACATATCTTCTTTG+TGG - chr3_4:38008466-38008485 Msa0499430:intron 30.0%
ACATGACATATCTTCTTTGT+GGG - chr3_4:38008467-38008486 Msa0499430:intron 30.0%
AGTTCATGTATTTACTTCCA+GGG + chr3_4:38008557-38008576 None:intergenic 30.0%
TAGTTCATGTATTTACTTCC+AGG + chr3_4:38008558-38008577 None:intergenic 30.0%
ATGTATTAGATCTTGATGCT+TGG - chr3_4:38008649-38008668 Msa0499430:intron 30.0%
TTACAAGTTTCAACCATTTC+CGG + chr3_4:38008701-38008720 None:intergenic 30.0%
CATAAAGATTAAACCAGCAA+AGG - chr3_4:38008794-38008813 Msa0499430:intron 30.0%
GTATAAAAAAACACTCGGAA+GGG + chr3_4:38008836-38008855 None:intergenic 30.0%
TGTATAAAAAAACACTCGGA+AGG + chr3_4:38008837-38008856 None:intergenic 30.0%
AAGAAATATGAATAGGGCTA+AGG - chr3_4:38008882-38008901 Msa0499430:intron 30.0%
! CAACAAATCTTTGGTTGTTT+TGG - chr3_4:38009033-38009052 Msa0499430:intron 30.0%
! TAAATGGCTCTATACCTTAA+AGG - chr3_4:38009078-38009097 Msa0499430:intron 30.0%
TAATTCCGAAGAAATTAGCA+AGG - chr3_4:38009403-38009422 Msa0499430:intron 30.0%
ATACGGAGATGTAGAATTAT+AGG - chr3_4:38009545-38009564 Msa0499430:intron 30.0%
TACGGAGATGTAGAATTATA+GGG - chr3_4:38009546-38009565 Msa0499430:intron 30.0%
! AAATTTGATGGTTCCAACAA+AGG + chr3_4:38009938-38009957 None:intergenic 30.0%
! GAATTTAGTTCGAGATCTGA+AGG + chr3_4:38002218-38002237 None:intergenic 35.0%
GATAGCAGTTAATGGAATCA+AGG - chr3_4:38002269-38002288 Msa0499430:three_prime_UTR 35.0%
AATATCAAACGGTAAGGGAT+CGG - chr3_4:38002335-38002354 Msa0499430:three_prime_UTR 35.0%
! TTTTGTTAGAGTTGCGATCT+TGG - chr3_4:38002485-38002504 Msa0499430:three_prime_UTR 35.0%
!!! CCATTAGTTTTTTTACCGTG+CGG - chr3_4:38002555-38002574 Msa0499430:three_prime_UTR 35.0%
AAATTTACTCAGTTACCGCA+CGG + chr3_4:38002573-38002592 None:intergenic 35.0%
! ATAAATGAATGGAGTGTCTG+AGG + chr3_4:38002852-38002871 None:intergenic 35.0%
! CACTGGTAAGTGTCTTTTTA+TGG - chr3_4:38003200-38003219 Msa0499430:intron 35.0%
TCCACGCTTTGTCAAAATAT+TGG - chr3_4:38003315-38003334 Msa0499430:intron 35.0%
CCACGCTTTGTCAAAATATT+GGG - chr3_4:38003316-38003335 Msa0499430:intron 35.0%
! TAAGCCACTTTGTGTGAAAA+AGG + chr3_4:38003460-38003479 None:intergenic 35.0%
TCACACAAAGTGGCTTAAAT+AGG - chr3_4:38003463-38003482 Msa0499430:intron 35.0%
TAAGTGACCTAGAACATTGT+CGG + chr3_4:38003544-38003563 None:intergenic 35.0%
! CAATGTTCTAGGTCACTTAT+TGG - chr3_4:38003545-38003564 Msa0499430:CDS 35.0%
TTACAAATTTGTCACGGTTC+TGG - chr3_4:38003691-38003710 Msa0499430:CDS 35.0%
TACAAATTTGTCACGGTTCT+GGG - chr3_4:38003692-38003711 Msa0499430:CDS 35.0%
!!! TATGAAGGTTTTGAGTTTGG+AGG - chr3_4:38003746-38003765 Msa0499430:CDS 35.0%
CAAAATGAGGCATATTTGCA+GGG + chr3_4:38003973-38003992 None:intergenic 35.0%
CCAAAACGATACATATTTGC+AGG + chr3_4:38004034-38004053 None:intergenic 35.0%
! CCTGCAAATATGTATCGTTT+TGG - chr3_4:38004031-38004050 Msa0499430:CDS 35.0%
TGCAAATCAACACAAAAGTG+GGG + chr3_4:38004070-38004089 None:intergenic 35.0%
GTGCAAATCAACACAAAAGT+GGG + chr3_4:38004071-38004090 None:intergenic 35.0%
TGTGCAAATCAACACAAAAG+TGG + chr3_4:38004072-38004091 None:intergenic 35.0%
!! TTTTTGAAAATAGTCCCTCC+AGG - chr3_4:38004181-38004200 Msa0499430:CDS 35.0%
!! TTTTGAAAATAGTCCCTCCA+GGG - chr3_4:38004182-38004201 Msa0499430:CDS 35.0%
!! TTTTGAAAATAGTCCCTGGA+GGG + chr3_4:38004198-38004217 None:intergenic 35.0%
!! TTTTTGAAAATAGTCCCTGG+AGG + chr3_4:38004199-38004218 None:intergenic 35.0%
CAAAACGAGGCATATTTACA+GGG - chr3_4:38004273-38004292 Msa0499430:CDS 35.0%
ATCAAAAGAAAGGGAATGGA+GGG + chr3_4:38004406-38004425 None:intergenic 35.0%
! AGCTCTTGACACAAGTTTTA+AGG - chr3_4:38004431-38004450 Msa0499430:CDS 35.0%
! GTTTATGGTGTTTTCCAACA+AGG - chr3_4:38004555-38004574 Msa0499430:intron 35.0%
TTTCTCAAGTTTACCCTTGT+TGG + chr3_4:38004572-38004591 None:intergenic 35.0%
CATCAAAAGAAATGGAATGG+AGG - chr3_4:38004649-38004668 Msa0499430:intron 35.0%
TGTTGAAAGGAGTAGAAAGT+AGG + chr3_4:38004715-38004734 None:intergenic 35.0%
AGTTTAATGCACGTACAATG+AGG - chr3_4:38004861-38004880 Msa0499430:intron 35.0%
CAATGAGGTTAACCAAATGT+TGG - chr3_4:38004876-38004895 Msa0499430:intron 35.0%
! GGAATTTTCGAAAGAAAAGC+TGG + chr3_4:38005359-38005378 None:intergenic 35.0%
GTACCAAAAATGTAGACATG+TGG + chr3_4:38005518-38005537 None:intergenic 35.0%
TACACACATTATGGAAGGAT+TGG - chr3_4:38005878-38005897 Msa0499430:intron 35.0%
CAATGCACTACCAATTTCAT+AGG + chr3_4:38005980-38005999 None:intergenic 35.0%
!! AGGTTTTGTACAGGTTTATG+TGG + chr3_4:38006454-38006473 None:intergenic 35.0%
AACTTCAATAATGTGTGCAC+AGG + chr3_4:38006474-38006493 None:intergenic 35.0%
!! ATATACAAGTTGGTGCAGAA+GGG + chr3_4:38006529-38006548 None:intergenic 35.0%
!! AATATACAAGTTGGTGCAGA+AGG + chr3_4:38006530-38006549 None:intergenic 35.0%
CAATGAACTTGTGAAAGAGA+TGG - chr3_4:38006688-38006707 Msa0499430:intron 35.0%
TCTTGAAAGCAAAAGCTTTG+AGG + chr3_4:38006727-38006746 None:intergenic 35.0%
CAAGAAATCCCCTTAAGTAT+CGG - chr3_4:38007159-38007178 Msa0499430:intron 35.0%
GACTGATCAAATCACACAAA+TGG - chr3_4:38007229-38007248 Msa0499430:intron 35.0%
CTGATCAAATCACACAAATG+GGG - chr3_4:38007231-38007250 Msa0499430:intron 35.0%
AGAAATACATACACCCTTTG+TGG + chr3_4:38007321-38007340 None:intergenic 35.0%
ATGTCTTCCATATGAAGTGT+CGG + chr3_4:38007451-38007470 None:intergenic 35.0%
AATACAGGTGTCAATGTGTT+CGG - chr3_4:38007573-38007592 Msa0499430:intron 35.0%
CATTGCTTCATAGTGCATAT+AGG - chr3_4:38007623-38007642 Msa0499430:intron 35.0%
ACATATTCAGCTATCACAGA+TGG - chr3_4:38007729-38007748 Msa0499430:intron 35.0%
CAAAGACAGTGTAAACTATG+GGG + chr3_4:38007820-38007839 None:intergenic 35.0%
GACAAAGACAGTGTAAACTA+TGG + chr3_4:38007822-38007841 None:intergenic 35.0%
ACACTGTCTTTGTCTTAAGT+TGG - chr3_4:38007828-38007847 Msa0499430:intron 35.0%
AGAATATGCTGTAAATGCCA+TGG - chr3_4:38007855-38007874 Msa0499430:intron 35.0%
CATTATCAGTTAGGAGAACT+AGG + chr3_4:38007942-38007961 None:intergenic 35.0%
! AACAGCTGATTCAACAGAAT+TGG + chr3_4:38008085-38008104 None:intergenic 35.0%
ATCAGCTGTTGTTGAAGTTA+AGG - chr3_4:38008095-38008114 Msa0499430:intron 35.0%
TCAGCTGTTGTTGAAGTTAA+GGG - chr3_4:38008096-38008115 Msa0499430:intron 35.0%
CCGAGGTAATTAGTTATTCT+TGG - chr3_4:38008295-38008314 Msa0499430:intron 35.0%
TTCTGCTACATAATGTGTCA+TGG - chr3_4:38008760-38008779 Msa0499430:intron 35.0%
TCCCTAATCTTTGGTCTATT+AGG - chr3_4:38008997-38009016 Msa0499430:intron 35.0%
GCCTAATAGACCAAAGATTA+GGG + chr3_4:38009001-38009020 None:intergenic 35.0%
AGCCTAATAGACCAAAGATT+AGG + chr3_4:38009002-38009021 None:intergenic 35.0%
ACCTTAAAGGATCAATGATC+AGG - chr3_4:38009091-38009110 Msa0499430:intron 35.0%
TCCTGATCATTGATCCTTTA+AGG + chr3_4:38009095-38009114 None:intergenic 35.0%
AAAGGATCAATGATCAGGAA+CGG - chr3_4:38009096-38009115 Msa0499430:intron 35.0%
GGAACTCATTCCCAAAATTA+TGG + chr3_4:38009150-38009169 None:intergenic 35.0%
GTAAATCTGACAACTTCATG+TGG + chr3_4:38009171-38009190 None:intergenic 35.0%
ATGGATCTATAGGATGTACT+TGG + chr3_4:38009352-38009371 None:intergenic 35.0%
!! ACAAGCATTGATGGATCTAT+AGG + chr3_4:38009362-38009381 None:intergenic 35.0%
!! AAATCAGTCACAAGCATTGA+TGG + chr3_4:38009371-38009390 None:intergenic 35.0%
! TCAATGCTTGTGACTGATTT+AGG - chr3_4:38009371-38009390 Msa0499430:intron 35.0%
ACTCTCCTTGCTAATTTCTT+CGG + chr3_4:38009411-38009430 None:intergenic 35.0%
GTTTCGACATTTCAATGAGA+CGG - chr3_4:38009848-38009867 Msa0499430:CDS 35.0%
! AGTCTTGTAAGTACCTTTGT+TGG - chr3_4:38009922-38009941 Msa0499430:five_prime_UTR 35.0%
! CGTGAGTGATTTTGTTCTGA+AGG + chr3_4:38002181-38002200 None:intergenic 40.0%
CCGCACGGTAAAAAAACTAA+TGG + chr3_4:38002558-38002577 None:intergenic 40.0%
AACAGGAGATTATAGTTGGC+AGG - chr3_4:38002790-38002809 Msa0499430:CDS 40.0%
!!! CCCAATATTTTGACAAAGCG+TGG + chr3_4:38003319-38003338 None:intergenic 40.0%
TATTGGGCAATTCACGTTAC+TGG - chr3_4:38003332-38003351 Msa0499430:intron 40.0%
!! GGTTCCTTTTTCACACAAAG+TGG - chr3_4:38003453-38003472 Msa0499430:intron 40.0%
GTGATTACCGACAATGTTCT+AGG - chr3_4:38003534-38003553 Msa0499430:CDS 40.0%
TCTCGAAATTAACGAGTTCG+TGG + chr3_4:38003921-38003940 None:intergenic 40.0%
CCAAAATGAGGCATATTTGC+AGG + chr3_4:38003974-38003993 None:intergenic 40.0%
! CCTGCAAATATGCCTCATTT+TGG - chr3_4:38003971-38003990 Msa0499430:CDS 40.0%
CAGGGACTAAAACCAAAATG+AGG + chr3_4:38003986-38004005 None:intergenic 40.0%
!!! ATCGTTTTGGTTTTTGTCCC+TGG - chr3_4:38004044-38004063 Msa0499430:CDS 40.0%
!! TTTGTGTTGATTTGCACACG+TGG - chr3_4:38004074-38004093 Msa0499430:CDS 40.0%
! CATGGACTAAAACCAAAACG+AGG - chr3_4:38004260-38004279 Msa0499430:CDS 40.0%
! CCTGTAAATATGCCTCGTTT+TGG + chr3_4:38004275-38004294 None:intergenic 40.0%
CCAAAACGAGGCATATTTAC+AGG - chr3_4:38004272-38004291 Msa0499430:CDS 40.0%
CATCAAAAGAAAGGGAATGG+AGG + chr3_4:38004407-38004426 None:intergenic 40.0%
ACGACTCTAACAACATGAAC+TGG + chr3_4:38005380-38005399 None:intergenic 40.0%
TGTTAGAGTCGTTTGTCAGA+CGG - chr3_4:38005388-38005407 Msa0499430:intron 40.0%
AGGGACATAAAAATGCTGAC+TGG - chr3_4:38005679-38005698 Msa0499430:intron 40.0%
AGTTGCATTTGTGCAATCTG+TGG - chr3_4:38006014-38006033 Msa0499430:intron 40.0%
GTTGCATTTGTGCAATCTGT+GGG - chr3_4:38006015-38006034 Msa0499430:intron 40.0%
AGAATCATGACATGCCAATG+CGG - chr3_4:38006333-38006352 Msa0499430:intron 40.0%
! AGCTTTTGTCAAAACCGCAT+TGG + chr3_4:38006350-38006369 None:intergenic 40.0%
TGCCTTGCAACTGAATTCTT+TGG - chr3_4:38006947-38006966 Msa0499430:intron 40.0%
GCCTTGCAACTGAATTCTTT+GGG - chr3_4:38006948-38006967 Msa0499430:intron 40.0%
TCCCAAAGAATTCAGTTGCA+AGG + chr3_4:38006952-38006971 None:intergenic 40.0%
!! CTGTAGTGTTTTGAACCACA+TGG + chr3_4:38007200-38007219 None:intergenic 40.0%
AACAGCAGGAGTCAGTTTAT+TGG - chr3_4:38007773-38007792 Msa0499430:intron 40.0%
TATTGGCATCTAGCATCACA+TGG - chr3_4:38007790-38007809 Msa0499430:intron 40.0%
GAACTAGGTGATGAAGAGTA+GGG + chr3_4:38007927-38007946 None:intergenic 40.0%
AGAACTAGGTGATGAAGAGT+AGG + chr3_4:38007928-38007947 None:intergenic 40.0%
!! GAATGAATTTTCAAGCGTGG+AGG + chr3_4:38007989-38008008 None:intergenic 40.0%
CTTATGCTTCAATGCATGCT+TGG - chr3_4:38008052-38008071 Msa0499430:intron 40.0%
! AGCTGATTCAACAGAATTGG+TGG + chr3_4:38008082-38008101 None:intergenic 40.0%
AGGGATTGCACCAATATGAT+TGG - chr3_4:38008115-38008134 Msa0499430:intron 40.0%
TGGTCTGAAGAAATGAATGC+TGG - chr3_4:38008135-38008154 Msa0499430:intron 40.0%
TTCATCAAAGAAAGGCTGCT+AGG + chr3_4:38008255-38008274 None:intergenic 40.0%
! GGAGTTGGTTCATCAAAGAA+AGG + chr3_4:38008263-38008282 None:intergenic 40.0%
TTACCTCGGGCATATAAATG+CGG + chr3_4:38008284-38008303 None:intergenic 40.0%
AGATCTGGAAAAAGCTGTAG+TGG + chr3_4:38008408-38008427 None:intergenic 40.0%
TTGTGGGACGTAGATCTTAA+TGG - chr3_4:38008483-38008502 Msa0499430:intron 40.0%
GATCTTAATGGCAAAGTCAG+TGG - chr3_4:38008495-38008514 Msa0499430:intron 40.0%
GTGGTTCAGTATTCAAGTCT+TGG - chr3_4:38008514-38008533 Msa0499430:intron 40.0%
TCGAAACTCGATGATATGAG+AGG + chr3_4:38008597-38008616 None:intergenic 40.0%
CTCATATCATCGAGTTTCGA+CGG - chr3_4:38008597-38008616 Msa0499430:intron 40.0%
CAAACATAACAGAGACCTAC+CGG - chr3_4:38008679-38008698 Msa0499430:intron 40.0%
AAGTTTCAACCATTTCCGGT+AGG + chr3_4:38008697-38008716 None:intergenic 40.0%
TTTCACAGAACCTCAAGTCT+GGG - chr3_4:38009273-38009292 Msa0499430:intron 40.0%
TCAAATGCAATCAAGGAAGG+TGG + chr3_4:38009326-38009345 None:intergenic 40.0%
CCATCAAATGCAATCAAGGA+AGG + chr3_4:38009329-38009348 None:intergenic 40.0%
CCTTCCTTGATTGCATTTGA+TGG - chr3_4:38009326-38009345 Msa0499430:intron 40.0%
TTGGCCATCAAATGCAATCA+AGG + chr3_4:38009333-38009352 None:intergenic 40.0%
!! TTTCAAGCCATGGTTTTGCA+GGG + chr3_4:38009466-38009485 None:intergenic 40.0%
!! ATTTCAAGCCATGGTTTTGC+AGG + chr3_4:38009467-38009486 None:intergenic 40.0%
GCAAAACCATGGCTTGAAAT+TGG - chr3_4:38009467-38009486 Msa0499430:intron 40.0%
!! TCCCAGAGTATCGAAGTTTA+TGG - chr3_4:38009492-38009511 Msa0499430:intron 40.0%
CCCATAAACTTCGATACTCT+GGG + chr3_4:38009496-38009515 None:intergenic 40.0%
!! CCCAGAGTATCGAAGTTTAT+GGG - chr3_4:38009493-38009512 Msa0499430:intron 40.0%
!! CCAGAGTATCGAAGTTTATG+GGG - chr3_4:38009494-38009513 Msa0499430:intron 40.0%
TTGCATCATTGATACCGTGT+TGG - chr3_4:38009609-38009628 Msa0499430:intron 40.0%
! TTGATACCGTGTTGGATTAG+AGG - chr3_4:38009617-38009636 Msa0499430:intron 40.0%
! TGATACCGTGTTGGATTAGA+GGG - chr3_4:38009618-38009637 Msa0499430:intron 40.0%
TTCTTCCCTCTAATCCAACA+CGG + chr3_4:38009626-38009645 None:intergenic 40.0%
ACGTATGAATCAGAGACTGA+AGG + chr3_4:38009656-38009675 None:intergenic 40.0%
GCAGTATCTGCAGTTAAGAA+AGG - chr3_4:38009762-38009781 Msa0499430:CDS 40.0%
TGAGACGGTTATAAGACACT+AGG - chr3_4:38009863-38009882 Msa0499430:CDS 40.0%
! GAAAGAGAGAAGAGAGTGTG+AGG + chr3_4:38002118-38002137 None:intergenic 45.0%
AGTTCGAGATCTGAAGGTGA+AGG + chr3_4:38002212-38002231 None:intergenic 45.0%
ATGACTGTTGCAGAATGTGC+TGG - chr3_4:38003148-38003167 Msa0499430:intron 45.0%
TGACTGTTGCAGAATGTGCT+GGG - chr3_4:38003149-38003168 Msa0499430:intron 45.0%
!! ATTTGTCACGGTTCTGGGTT+TGG - chr3_4:38003697-38003716 Msa0499430:CDS 45.0%
TTTGTGCAATCTGTGGGACA+TGG - chr3_4:38006021-38006040 Msa0499430:intron 45.0%
!! TGTGTGCACAGGTTTTGTAC+AGG + chr3_4:38006463-38006482 None:intergenic 45.0%
ATTTGCTTCCATTAGCGCTC+TGG + chr3_4:38006630-38006649 None:intergenic 45.0%
GCGCTAATGGAAGCAAATGA+TGG - chr3_4:38006632-38006651 Msa0499430:intron 45.0%
TGCTTTCAAGACCAAAGCCA+TGG - chr3_4:38006736-38006755 Msa0499430:intron 45.0%
AATATGCACACCGACCCAAA+AGG + chr3_4:38006841-38006860 None:intergenic 45.0%
!! TGTAGCACCGACACTTCATA+TGG - chr3_4:38007441-38007460 Msa0499430:intron 45.0%
! TGTCTTGTGCCGATATGTGT+CGG - chr3_4:38007470-38007489 Msa0499430:intron 45.0%
TGTACGACACCGACACATAT+CGG + chr3_4:38007482-38007501 None:intergenic 45.0%
!! CATGTGTCGGTGTCATACAT+AGG + chr3_4:38007520-38007539 None:intergenic 45.0%
GCTATCACAGATGGAACACA+AGG - chr3_4:38007738-38007757 Msa0499430:intron 45.0%
TGAATTCGCTTCTCGCCTTT+CGG - chr3_4:38007900-38007919 Msa0499430:intron 45.0%
CGGCAAGGACATTATCAGTT+AGG + chr3_4:38007951-38007970 None:intergenic 45.0%
! TGCTGGTGTTAAAGAGATGC+TGG - chr3_4:38008152-38008171 Msa0499430:intron 45.0%
AGTTTCGACGGTGAACAATG+TGG - chr3_4:38008609-38008628 Msa0499430:intron 45.0%
GTTTCGACGGTGAACAATGT+GGG - chr3_4:38008610-38008629 Msa0499430:intron 45.0%
TAACAGAGACCTACCGGAAA+TGG - chr3_4:38008685-38008704 Msa0499430:intron 45.0%
GACCAAAGATTAGGGACGTA+GGG + chr3_4:38008993-38009012 None:intergenic 45.0%
AGACCAAAGATTAGGGACGT+AGG + chr3_4:38008994-38009013 None:intergenic 45.0%
GATCAATGATCAGGAACGGA+GGG - chr3_4:38009100-38009119 Msa0499430:intron 45.0%
GTTTCACAGAACCTCAAGTC+TGG - chr3_4:38009272-38009291 Msa0499430:intron 45.0%
GCTTCGGTTATCCATTTCAG+TGG - chr3_4:38009440-38009459 Msa0499430:intron 45.0%
GGGAAACCAATTTCAAGCCA+TGG + chr3_4:38009476-38009495 None:intergenic 45.0%
CCCCATAAACTTCGATACTC+TGG + chr3_4:38009497-38009516 None:intergenic 45.0%
GCTTCTAGTAGGATACTGCT+TGG + chr3_4:38009744-38009763 None:intergenic 45.0%
CTGCAGATACTGCTTCTAGT+AGG + chr3_4:38009755-38009774 None:intergenic 45.0%
!! TAGTTATTAAAATATTATTA+TGG - chr3_4:38002761-38002780 Msa0499430:CDS 5.0%
!!! TTTTTAAAATTATTTTTTAG+TGG - chr3_4:38003002-38003021 Msa0499430:intron 5.0%
!! TATAGAAAAAATTATTAAAA+TGG - chr3_4:38003379-38003398 Msa0499430:intron 5.0%
!!! TAATTTTAAATAATTTTTTG+TGG - chr3_4:38003413-38003432 Msa0499430:intron 5.0%
CCGGAAGAACCACTAACAGT+CGG + chr3_4:38002399-38002418 None:intergenic 50.0%
CCGACTGTTAGTGGTTCTTC+CGG - chr3_4:38002396-38002415 Msa0499430:three_prime_UTR 50.0%
! TTCCGGTGGTGTTAGTGCTT+GGG - chr3_4:38002445-38002464 Msa0499430:three_prime_UTR 50.0%
ATCCCAAGCACTAACACCAC+CGG + chr3_4:38002450-38002469 None:intergenic 50.0%
TCAACACAAAAGTGGGGCCA+GGG + chr3_4:38004064-38004083 None:intergenic 50.0%
ATCAACACAAAAGTGGGGCC+AGG + chr3_4:38004065-38004084 None:intergenic 50.0%
! TGAGCTAACCAGAGCGCTAA+TGG - chr3_4:38006619-38006638 Msa0499430:intron 50.0%
TGGGTCGGTGTGCATATTTC+AGG - chr3_4:38006843-38006862 Msa0499430:intron 50.0%
!! TGTGTCGGTGTCGTACATGT+CGG - chr3_4:38007485-38007504 Msa0499430:intron 50.0%
GGTGCAAACAGCAAAACAGC+AGG - chr3_4:38007759-38007778 Msa0499430:intron 50.0%
GAAAGGCGAGAAGCGAATTC+AGG + chr3_4:38007901-38007920 None:intergenic 50.0%
GATGAAGAGTAGGGTCCGAA+AGG + chr3_4:38007918-38007937 None:intergenic 50.0%
CGGGCATATAAATGCGGAGT+TGG + chr3_4:38008278-38008297 None:intergenic 50.0%
ACTCCGCATTTATATGCCCG+AGG - chr3_4:38008278-38008297 Msa0499430:intron 50.0%
! GAACAATGTGGGTGGCTCTA+TGG - chr3_4:38008621-38008640 Msa0499430:intron 50.0%
CTCCCTACGTCCCTAATCTT+TGG - chr3_4:38008988-38009007 Msa0499430:intron 50.0%
GGATCAATGATCAGGAACGG+AGG - chr3_4:38009099-38009118 Msa0499430:intron 50.0%
AAGGAAGGTGGAAGAACTCC+TGG + chr3_4:38009314-38009333 None:intergenic 50.0%
GGAGAGTCTAGAAGCTGCTT+CGG - chr3_4:38009424-38009443 Msa0499430:intron 50.0%
! GTTTTGCAGGGCCACTGAAA+TGG + chr3_4:38009454-38009473 None:intergenic 50.0%
AAACGGTAAGGGATCGGCGA+AGG - chr3_4:38002341-38002360 Msa0499430:three_prime_UTR 55.0%
GGCGAAGGATACAACGACGA+CGG - chr3_4:38002356-38002375 Msa0499430:three_prime_UTR 55.0%
GAAGGATACAACGACGACGG+CGG - chr3_4:38002359-38002378 Msa0499430:three_prime_UTR 55.0%
GGAGGAAGTCCGACTGTTAG+TGG - chr3_4:38002387-38002406 Msa0499430:three_prime_UTR 55.0%
TTAGTGGTTCTTCCGGTCGC+CGG - chr3_4:38002403-38002422 Msa0499430:three_prime_UTR 55.0%
! CTTCCGGTGGTGTTAGTGCT+TGG - chr3_4:38002444-38002463 Msa0499430:three_prime_UTR 55.0%
CTGTTGCAGAATGTGCTGGG+TGG - chr3_4:38003152-38003171 Msa0499430:intron 55.0%
TTGCAGAATGTGCTGGGTGG+AGG - chr3_4:38003155-38003174 Msa0499430:intron 55.0%
!! GCTGGGTGGAGGTTTTTCAG+TGG - chr3_4:38003166-38003185 Msa0499430:intron 55.0%
AAGCGAATTCAGGAGGAGGC+AGG + chr3_4:38007891-38007910 None:intergenic 55.0%
CGAGAAGCGAATTCAGGAGG+AGG + chr3_4:38007895-38007914 None:intergenic 55.0%
AGGCGAGAAGCGAATTCAGG+AGG + chr3_4:38007898-38007917 None:intergenic 55.0%
CTACAACAACAGAGGCGGCA+AGG + chr3_4:38007966-38007985 None:intergenic 55.0%
GGAGGCTACAACAACAGAGG+CGG + chr3_4:38007971-38007990 None:intergenic 55.0%
CGTGGAGGCTACAACAACAG+AGG + chr3_4:38007974-38007993 None:intergenic 55.0%
! TGTGAAGACAAGTGCTGCCC+TGG - chr3_4:38008537-38008556 Msa0499430:intron 55.0%
TCGACGGTGAACAATGTGGG+TGG - chr3_4:38008613-38008632 Msa0499430:intron 55.0%
ACAGTGCTGTCCCAGACTTG+AGG + chr3_4:38009286-38009305 None:intergenic 55.0%
! TCAAGTCTGGGACAGCACTG+TGG - chr3_4:38009285-38009304 Msa0499430:intron 55.0%
TCAGTGGCCCTGCAAAACCA+TGG - chr3_4:38009456-38009475 Msa0499430:intron 55.0%
TCGCCGGATTTCACTCCGGA+CGG - chr3_4:38002419-38002438 Msa0499430:three_prime_UTR 60.0%
GCACCGTCCGGAGTGAAATC+CGG + chr3_4:38002425-38002444 None:intergenic 60.0%
TTCACTCCGGACGGTGCTTC+CGG - chr3_4:38002428-38002447 Msa0499430:three_prime_UTR 60.0%
CAGTGGAGCTGACACGTCAC+TGG - chr3_4:38003183-38003202 Msa0499430:intron 60.0%
GGGACAGCACTGTGGAATCC+AGG - chr3_4:38009293-38009312 Msa0499430:intron 60.0%
GGATACAACGACGACGGCGG+CGG - chr3_4:38002362-38002381 Msa0499430:three_prime_UTR 65.0%
GATACAACGACGACGGCGGC+GGG - chr3_4:38002363-38002382 Msa0499430:three_prime_UTR 65.0%
CCGGAGTGAAATCCGGCGAC+CGG + chr3_4:38002418-38002437 None:intergenic 65.0%
CCGGTCGCCGGATTTCACTC+CGG - chr3_4:38002415-38002434 Msa0499430:three_prime_UTR 65.0%
!! ACACCACCGGAAGCACCGTC+CGG + chr3_4:38002437-38002456 None:intergenic 65.0%
AGGCAGGCGAGATCGAGCCA+TGG + chr3_4:38007875-38007894 None:intergenic 65.0%
ACTCCGGACGGTGCTTCCGG+TGG - chr3_4:38002431-38002450 Msa0499430:three_prime_UTR 70.0%
ACAACGACGACGGCGGCGGG+AGG - chr3_4:38002366-38002385 Msa0499430:three_prime_UTR 75.0%
! ACGACGACGGCGGCGGGAGG+AGG - chr3_4:38002369-38002388 Msa0499430:three_prime_UTR 80.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 38002077 38010130 38002077 ID=Msa0499430;Name=Msa0499430
chr3_4 mRNA 38002077 38010130 38002077 ID=Msa0499430-mRNA-1;Parent=Msa0499430;Name=Msa0499430-mRNA-1;_AED=0.03;_eAED=0.03;_QI=217|1|1|1|1|1|6|559|531
chr3_4 exon 38002077 38002926 38002077 ID=Msa0499430-mRNA-1:exon:7863;Parent=Msa0499430-mRNA-1
chr3_4 exon 38003491 38003793 38003491 ID=Msa0499430-mRNA-1:exon:7862;Parent=Msa0499430-mRNA-1
chr3_4 exon 38003908 38004468 38003908 ID=Msa0499430-mRNA-1:exon:7861;Parent=Msa0499430-mRNA-1
chr3_4 exon 38005450 38005599 38005450 ID=Msa0499430-mRNA-1:exon:7860;Parent=Msa0499430-mRNA-1
chr3_4 exon 38009003 38009046 38009003 ID=Msa0499430-mRNA-1:exon:7859;Parent=Msa0499430-mRNA-1
chr3_4 exon 38009667 38010130 38009667 ID=Msa0499430-mRNA-1:exon:7858;Parent=Msa0499430-mRNA-1
chr3_4 five_prime_UTR 38009914 38010130 38009914 ID=Msa0499430-mRNA-1:five_prime_utr;Parent=Msa0499430-mRNA-1
chr3_4 CDS 38009667 38009913 38009667 ID=Msa0499430-mRNA-1:cds;Parent=Msa0499430-mRNA-1
chr3_4 CDS 38009003 38009046 38009003 ID=Msa0499430-mRNA-1:cds;Parent=Msa0499430-mRNA-1
chr3_4 CDS 38005450 38005599 38005450 ID=Msa0499430-mRNA-1:cds;Parent=Msa0499430-mRNA-1
chr3_4 CDS 38003908 38004468 38003908 ID=Msa0499430-mRNA-1:cds;Parent=Msa0499430-mRNA-1
chr3_4 CDS 38003491 38003793 38003491 ID=Msa0499430-mRNA-1:cds;Parent=Msa0499430-mRNA-1
chr3_4 CDS 38002636 38002926 38002636 ID=Msa0499430-mRNA-1:cds;Parent=Msa0499430-mRNA-1
chr3_4 three_prime_UTR 38002077 38002635 38002077 ID=Msa0499430-mRNA-1:three_prime_utr;Parent=Msa0499430-mRNA-1
Gene Sequence

>Msa0499430

ATGAAGTTTTACATATCAGCAAAGGGAATAAAACGAGTAACAATATCAAACGGTAAGGGATCGGCGAAGGATACAACGACGACGGCGGCGGGAGGAGGAAGTCCGACTGTTAGTGGTTCTTCCGGTCGCCGGATTTCACTCCGGACGGTGCTTCCGGTGGTGTTAGTGCTTGGGATCTTGTTGCCGTTTGTTTTTGTTAGAGTTGCGATCTTGGTTCTTGAATCTGCTACTTTTTGTTCTTCATTGGAATGTGCTGGGTGGAGGTTTTTCAGTGGAGCTGACACGTCACTGAAACTCAGAGATGAGCTAACCAGAGCGCTAATGGAAGCAAATGATGGTAATATTAATGATAATGAAGGAGCAGTGTCATTCAATGAACTTGTGAAAGAGATGGTCTTAAAACAAGACCTCAAAGCTTTTGCTTTCAAGACCAAAGCCATGCTATCACAGATGGAACACAAGGTGCAAACAGCAAAACAGCAGGAGTCAGTTTATTGGCATCTAGCATCACATGGTGTTCCCCATAGTTTACACTGTCTTTGTCTTAAGTTGGCTGAAGAATATGCTGTAAATGCCATGGCTCGATCTCGCCTGCCTCCTCCTGAATTCGCTTCTCGCCTTTCGGACCCTACTCTTCATCACCTAGTTCTCCTAACTGATAATGTCCTTGCCGCCTCTGTTGTTGTAGCCTCCACGCTTGAAAATTCATTCAATCCTCAAAAATTAGTTTTTCATATTGTTACCGACAAAAAAACTTATGCTTCAATGCATGCTTGGTTTGCCACCAATTCTGTTGAATCAGCTGTTGTTGAAGTTAAGGGATTGCACCAATATGATTGGTCTGAAGAAATGAATGCTGGTGTTAAAGAGATGCTGGAAACTAATCACTTAATTTGGAAGCACTACTATGATAAAGAAAAGAACATCAACTATAGTAATTTGAACGCTTTACGGCCTAGCAGCCTTTCTTTGATGAACCAACTCCGCATTTATATGCCCGAGCTTTTTCCAGATCTCAAAAAGATAGTATTCTTAGATGATGATGTTGTAGTACAACATGACATATCTTCTTTGTGGGACGTAGATCTTAATGGCAAAGTCAGTGGTTCAGTATTCAAGTCTTGGTGTGAAGACAAGTGCTGCCCTGGAAGTAAATACATGAACTACTTGAACTTTTCACATCCTCTCATATCATCGAGTTTCGACGGTGAACAATGTGGGTGGCTCTATGGCATGAATGTATTAGATCTTGATGCTTGGAGAAGAACAAACATAACAGAGACCTACCGGAAATGGTTGAAACTTAACCTCAAGTCTGGGACAGCACTGTGGAATCCAGGAGTTCTTCCACCTTCCTTGATTGCATTTGATGGCCAAGTACATCCTATAGATCCATCAATGCTTGTGACTGATTTAGGTTATCGCTATAATTCCGAAGAAATTAGCAAGGAGAGTCTAGAAGCTGCTTCGGTTATCCATTTCAGTGGCCCTGCAAAACCATGGCTTGAAATTGGTTTCCCAGAGTATCGAAGTTTATGGGGTAGATATGTAAACTTCTCTAATAAGTTTATACGGAGATGTAGAATTATAGGGTAA
Protein sequence

>Msa0499430

MKFYISAKGIKRVTISNGKGSAKDTTTTAAGGGSPTVSGSSGRRISLRTVLPVVLVLGILLPFVFVRVAILVLESATFCSSLECAGWRFFSGADTSLKLRDELTRALMEANDGNINDNEGAVSFNELVKEMVLKQDLKAFAFKTKAMLSQMEHKVQTAKQQESVYWHLASHGVPHSLHCLCLKLAEEYAVNAMARSRLPPPEFASRLSDPTLHHLVLLTDNVLAASVVVASTLENSFNPQKLVFHIVTDKKTYASMHAWFATNSVESAVVEVKGLHQYDWSEEMNAGVKEMLETNHLIWKHYYDKEKNINYSNLNALRPSSLSLMNQLRIYMPELFPDLKKIVFLDDDVVVQHDISSLWDVDLNGKVSGSVFKSWCEDKCCPGSKYMNYLNFSHPLISSSFDGEQCGWLYGMNVLDLDAWRRTNITETYRKWLKLNLKSGTALWNPGVLPPSLIAFDGQVHPIDPSMLVTDLGYRYNSEEISKESLEAASVIHFSGPAKPWLEIGFPEYRSLWGRYVNFSNKFIRRCRIIG*