AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0361390

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0361390 MtrunA17_Chr3g0099641 92.000 475 29 3 2 476 3 468 0.0 865
Msa0361390 MtrunA17_Chr2g0288871 43.867 481 201 13 32 453 60 530 9.27e-98 305
Msa0361390 MtrunA17_Chr2g0322391 40.447 492 207 15 34 454 81 557 4.22e-91 289
Msa0361390 MtrunA17_Chr4g0075201 39.168 457 202 12 34 441 36 465 2.35e-86 273
Msa0361390 MtrunA17_Chr7g0270831 35.608 469 216 13 22 468 13 417 1.66e-69 228
Msa0361390 MtrunA17_Chr4g0025051 34.934 458 209 11 87 460 100 552 3.62e-64 218
Msa0361390 MtrunA17_Chr4g0025061 34.667 450 201 13 93 461 131 568 2.43e-62 213
Msa0361390 MtrunA17_Chr2g0302391 47.210 233 110 6 233 456 185 413 6.81e-58 197
Msa0361390 MtrunA17_Chr4g0024391 33.632 446 206 12 95 455 2 442 8.29e-57 196
Msa0361390 MtrunA17_Chr7g0216891 30.926 443 205 12 107 457 54 487 4.31e-46 169
Msa0361390 MtrunA17_Chr4g0051181 40.076 262 117 7 243 467 227 485 2.08e-42 157
Msa0361390 MtrunA17_Chr4g0060271 38.650 326 144 9 99 380 76 389 1.46e-38 148
Msa0361390 MtrunA17_Chr5g0419241 72.308 65 18 0 223 287 41 105 3.67e-29 110
Msa0361390 MtrunA17_Chr4g0001361 33.178 214 101 6 242 455 145 316 1.66e-28 115
Msa0361390 MtrunA17_Chr1g0150271 47.368 95 48 1 243 335 83 177 1.50e-25 105
Msa0361390 MtrunA17_Chr3g0136961 53.947 76 35 0 242 317 121 196 1.21e-24 103
Msa0361390 MtrunA17_Chr4g0004911 38.686 137 73 4 191 319 262 395 3.55e-24 105
Msa0361390 MtrunA17_Chr4g0004911 35.955 89 56 1 240 328 165 252 4.52e-13 71.2
Msa0361390 MtrunA17_Chr5g0432161 47.191 89 46 1 231 319 393 480 8.26e-24 104
Msa0361390 MtrunA17_Chr5g0432161 50.000 60 28 2 260 319 245 302 7.06e-12 67.8
Msa0361390 MtrunA17_Chr1g0150281 33.014 209 82 6 244 452 125 275 1.31e-23 100
Msa0361390 MtrunA17_Chr5g0445311 52.564 78 36 1 242 319 347 423 1.45e-23 103
Msa0361390 MtrunA17_Chr3g0101131 52.564 78 36 1 242 319 398 474 1.67e-23 103
Msa0361390 MtrunA17_Chr5g0447701 45.361 97 51 2 233 329 226 320 2.03e-23 102
Msa0361390 MtrunA17_Chr7g0218081 45.918 98 49 2 238 335 389 482 4.44e-23 102
Msa0361390 MtrunA17_Chr7g0218081 53.333 60 26 2 260 319 229 286 3.47e-13 71.6
Msa0361390 MtrunA17_Chr3g0106491 44.944 89 48 1 231 319 337 424 7.16e-23 101
Msa0361390 MtrunA17_Chr3g0106491 48.333 60 29 2 260 319 199 256 8.70e-12 67.4
Msa0361390 MtrunA17_Chr3g0079691 52.564 78 36 1 242 319 478 554 1.30e-22 101
Msa0361390 MtrunA17_Chr3g0079691 42.683 82 44 3 260 340 281 360 7.68e-14 73.9
Msa0361390 MtrunA17_Chr7g0243891 44.554 101 50 2 224 319 334 433 1.79e-22 100
Msa0361390 MtrunA17_Chr7g0243891 42.466 73 40 2 260 332 217 287 8.05e-11 64.3
Msa0361390 MtrunA17_Chr4g0051881 43.956 91 50 1 246 336 165 254 2.49e-22 97.8
Msa0361390 MtrunA17_Chr2g0333851 29.224 219 99 5 236 449 142 309 3.40e-22 97.1
Msa0361390 MtrunA17_Chr5g0418191 46.988 83 43 1 237 319 298 379 3.64e-22 98.6
Msa0361390 MtrunA17_Chr5g0418191 47.222 72 36 2 260 331 152 221 2.54e-13 71.6
Msa0361390 MtrunA17_Chr2g0294231 48.148 81 41 1 243 323 187 266 4.90e-22 97.8
Msa0361390 MtrunA17_Chr4g0042831 47.561 82 42 1 238 319 257 337 1.11e-21 96.7
Msa0361390 MtrunA17_Chr4g0042831 42.500 80 43 2 260 339 146 222 3.08e-11 65.1
Msa0361390 MtrunA17_Chr5g0443131 49.383 81 40 1 246 326 144 223 2.36e-21 94.4
Msa0361390 MtrunA17_Chr7g0270191 42.857 98 51 2 243 340 129 221 3.57e-21 93.6
Msa0361390 MtrunA17_Chr7g0249311 48.718 78 39 1 242 319 375 451 4.49e-21 96.7
Msa0361390 MtrunA17_Chr7g0249311 46.875 64 32 2 260 323 180 241 5.30e-12 68.2
Msa0361390 MtrunA17_Chr7g0249301 48.718 78 39 1 242 319 275 351 9.44e-21 94.0
Msa0361390 MtrunA17_Chr7g0249301 44.928 69 36 2 255 323 58 124 1.81e-12 68.9
Msa0361390 MtrunA17_Chr4g0068541 46.341 82 43 1 243 324 192 272 1.38e-20 94.0
Msa0361390 MtrunA17_Chr1g0194481 40.385 104 60 2 243 345 142 244 1.59e-20 92.4
Msa0361390 MtrunA17_Chr5g0418781 46.914 81 42 1 236 316 101 180 2.10e-20 91.3
Msa0361390 MtrunA17_Chr7g0224801 50.667 75 36 1 248 322 82 155 2.48e-20 88.2
Msa0361390 MtrunA17_Chr1g0150801 49.315 73 36 1 244 316 87 158 5.33e-20 87.0
Msa0361390 MtrunA17_Chr7g0263531 46.988 83 43 1 237 319 339 420 6.67e-20 92.0
Msa0361390 MtrunA17_Chr7g0263531 44.000 75 40 2 260 334 190 262 6.59e-13 70.5
Msa0361390 MtrunA17_Chr8g0386241 42.857 84 47 1 242 325 86 168 1.50e-19 86.3
Msa0361390 MtrunA17_Chr3g0129321 50.000 74 36 1 246 319 105 177 3.77e-19 85.9
Msa0361390 MtrunA17_Chr1g0184691 51.389 72 35 0 255 326 289 360 4.37e-19 88.6
Msa0361390 MtrunA17_Chr2g0284321 58.065 62 26 0 259 320 35 96 5.13e-19 85.5
Msa0361390 MtrunA17_Chr8g0379461 46.739 92 42 2 250 340 66 151 5.64e-19 86.3
Msa0361390 MtrunA17_Chr7g0270051 42.857 98 47 2 241 332 29 123 6.38e-19 86.7
Msa0361390 MtrunA17_Chr7g0248721 49.425 87 39 3 243 329 125 206 9.18e-19 85.1
Msa0361390 MtrunA17_Chr2g0293481 40.000 110 65 1 226 334 233 342 1.06e-18 88.6
Msa0361390 MtrunA17_Chr4g0053281 50.685 73 36 0 246 318 253 325 1.12e-18 87.0
Msa0361390 MtrunA17_Chr8g0383251 44.156 77 42 1 246 322 95 170 1.15e-18 84.0
Msa0361390 MtrunA17_Chr5g0401821 50.000 74 37 0 245 318 185 258 1.31e-18 85.9
Msa0361390 MtrunA17_Chr8g0335811 46.053 76 40 1 242 317 137 211 1.40e-18 84.7
Msa0361390 MtrunA17_Chr2g0289181 41.975 81 47 0 254 334 9 89 1.60e-18 84.7
Msa0361390 MtrunA17_Chr2g0319961 51.429 70 34 0 250 319 71 140 1.80e-18 85.1
Msa0361390 MtrunA17_Chr4g0074001 48.052 77 39 1 243 319 343 418 2.67e-18 87.4
Msa0361390 MtrunA17_Chr3g0129361 44.737 76 41 1 242 317 127 201 4.63e-18 83.2
Msa0361390 MtrunA17_Chr7g0228941 47.887 71 37 0 246 316 39 109 4.86e-18 80.1
Msa0361390 MtrunA17_Chr1g0147881 43.421 76 43 0 243 318 246 321 5.03e-18 85.1
Msa0361390 MtrunA17_Chr4g0071521 47.500 80 41 1 239 317 224 303 8.21e-18 84.3
Msa0361390 MtrunA17_Chr1g0188941 48.485 66 33 1 254 319 46 110 1.44e-17 78.6
Msa0361390 MtrunA17_Chr8g0383351 44.156 77 41 2 242 317 142 217 1.65e-16 79.0
Msa0361390 MtrunA17_Chr1g0202461 41.489 94 53 1 256 349 258 349 1.75e-16 81.3
Msa0361390 MtrunA17_Chr8g0348311 45.946 74 40 0 256 329 152 225 2.66e-16 80.1
Msa0361390 MtrunA17_Chr3g0139021 44.595 74 41 0 243 316 298 371 2.81e-16 80.5
Msa0361390 MtrunA17_Chr6g0485431 47.561 82 40 3 240 319 134 214 4.91e-16 79.3
Msa0361390 MtrunA17_Chr7g0248691 39.362 94 50 1 256 349 151 237 1.60e-15 77.4
Msa0361390 MtrunA17_Chr8g0387501 43.056 72 41 0 258 329 128 199 4.71e-15 75.5
Msa0361390 MtrunA17_Chr7g0238921 54.098 61 27 1 260 320 125 184 9.17e-15 75.1
Msa0361390 MtrunA17_Chr1g0189391 42.466 73 40 2 246 317 84 155 1.52e-13 71.6
Msa0361390 MtrunA17_Chr8g0347251 46.575 73 32 2 258 323 135 207 6.22e-12 67.0
Msa0361390 MtrunA17_Chr7g0244981 43.210 81 44 1 260 338 123 203 8.21e-12 65.9
Msa0361390 MtrunA17_Chr5g0432071 40.260 77 44 2 260 336 105 179 1.20e-11 64.3
Msa0361390 MtrunA17_Chr7g0244971 36.364 99 60 2 243 338 106 204 2.07e-11 64.7
Msa0361390 MtrunA17_Chr8g0387981 35.593 118 58 5 221 320 83 200 2.71e-11 65.1
Msa0361390 MtrunA17_Chr5g0447711 34.783 92 57 3 249 339 220 309 3.64e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0361390 AT4G04450.1 39.798 495 208 18 33 452 24 503 6.45e-92 289
Msa0361390 AT4G04450.2 42.615 413 175 11 87 452 12 409 3.17e-90 282
Msa0361390 AT1G62300.1 40.426 470 221 12 34 455 84 542 2.28e-88 281
Msa0361390 AT4G22070.4 43.243 407 175 12 26 381 19 420 6.36e-75 245
Msa0361390 AT4G22070.3 43.243 407 175 12 26 381 19 420 6.36e-75 245
Msa0361390 AT4G22070.2 43.243 407 175 12 26 381 19 420 6.36e-75 245
Msa0361390 AT4G22070.1 43.243 407 175 12 26 381 19 420 6.36e-75 245
Msa0361390 AT4G01720.1 49.200 250 104 6 221 449 196 443 7.20e-54 188
Msa0361390 AT5G15130.1 32.366 448 218 14 93 463 35 474 8.47e-46 167
Msa0361390 AT5G15130.2 32.500 440 212 14 101 463 1 432 2.89e-45 165
Msa0361390 AT1G68150.1 40.078 257 124 8 100 355 100 327 4.25e-45 162
Msa0361390 AT1G18860.1 50.521 192 71 6 239 421 219 395 6.46e-41 154
Msa0361390 AT1G69810.1 33.226 310 187 7 86 381 18 321 6.62e-36 137
Msa0361390 AT1G69810.2 47.771 157 76 3 226 381 112 263 4.51e-34 131
Msa0361390 AT1G80840.1 25.879 398 184 12 56 449 1 291 1.01e-27 112
Msa0361390 AT4G31800.1 32.773 238 125 6 100 337 52 254 1.22e-25 107
Msa0361390 AT4G31800.2 41.905 105 61 0 233 337 85 189 2.21e-24 102
Msa0361390 AT2G38470.1 38.636 132 66 4 242 373 345 461 4.91e-24 105
Msa0361390 AT2G38470.1 45.205 73 37 3 247 319 173 242 9.00e-12 67.8
Msa0361390 AT1G29860.1 39.706 136 71 4 243 368 120 254 9.19e-24 101
Msa0361390 AT1G13960.2 53.012 83 38 1 237 319 234 315 1.01e-23 102
Msa0361390 AT1G13960.2 53.333 60 26 2 260 319 77 134 7.32e-13 70.5
Msa0361390 AT1G13960.1 53.012 83 38 1 237 319 387 468 1.30e-23 103
Msa0361390 AT1G13960.1 53.333 60 26 2 260 319 230 287 4.72e-13 71.6
Msa0361390 AT5G07100.2 45.361 97 47 2 239 330 121 216 3.35e-23 97.8
Msa0361390 AT5G07100.4 45.361 97 47 2 239 330 121 216 3.35e-23 97.8
Msa0361390 AT5G07100.5 45.361 97 47 2 239 330 121 216 3.35e-23 97.8
Msa0361390 AT5G07100.3 45.361 97 47 2 239 330 121 216 3.35e-23 97.8
Msa0361390 AT4G26640.5 51.282 78 37 1 242 319 188 264 3.94e-23 101
Msa0361390 AT4G26640.6 51.282 78 37 1 242 319 188 264 3.94e-23 101
Msa0361390 AT4G26640.4 51.282 78 37 1 242 319 188 264 3.94e-23 101
Msa0361390 AT4G26640.3 51.282 78 37 1 242 319 188 264 3.94e-23 101
Msa0361390 AT5G46350.1 42.969 128 61 4 232 349 147 272 5.56e-23 99.8
Msa0361390 AT5G07100.1 45.361 97 47 2 239 330 214 309 5.96e-23 99.4
Msa0361390 AT4G26640.7 51.282 78 37 1 242 319 324 400 7.23e-23 102
Msa0361390 AT4G26640.1 51.282 78 37 1 242 319 292 368 8.14e-23 101
Msa0361390 AT4G26640.2 51.282 78 37 1 242 319 364 440 1.03e-22 101
Msa0361390 AT2G03340.1 50.602 83 40 1 237 319 393 474 1.79e-22 100
Msa0361390 AT2G03340.1 56.667 60 24 2 260 319 251 308 2.06e-14 75.9
Msa0361390 AT2G25000.2 61.290 62 24 0 258 319 102 163 2.02e-22 95.9
Msa0361390 AT2G25000.4 61.290 62 24 0 258 319 102 163 2.02e-22 95.9
Msa0361390 AT2G25000.3 61.290 62 24 0 258 319 124 185 3.05e-22 96.3
Msa0361390 AT2G25000.1 61.290 62 24 0 258 319 145 206 3.69e-22 96.3
Msa0361390 AT5G26170.1 50.685 73 35 1 245 317 99 170 3.94e-22 93.6
Msa0361390 AT2G47260.1 45.545 101 50 2 243 339 158 257 4.88e-22 97.4
Msa0361390 AT5G41570.1 52.941 85 36 2 243 327 82 162 4.95e-22 93.6
Msa0361390 AT5G56270.1 49.398 83 41 1 237 319 465 546 6.00e-22 99.8
Msa0361390 AT5G56270.1 49.180 61 29 2 260 320 274 332 8.23e-12 68.2
Msa0361390 AT4G18170.1 51.948 77 36 1 243 319 156 231 7.44e-22 96.7
Msa0361390 AT2G04880.2 48.684 76 38 1 245 320 269 343 1.00e-21 98.2
Msa0361390 AT2G04880.2 42.500 80 37 3 247 319 92 169 1.43e-11 67.0
Msa0361390 AT2G04880.1 48.684 76 38 1 245 320 293 367 1.15e-21 98.2
Msa0361390 AT2G04880.1 42.500 80 37 3 247 319 92 169 1.67e-11 66.6
Msa0361390 AT3G01970.1 42.991 107 47 2 225 318 18 123 1.31e-21 91.3
Msa0361390 AT5G49520.1 44.944 89 48 1 243 331 205 292 1.88e-21 96.7
Msa0361390 AT1G64000.1 53.659 82 34 2 246 327 101 178 2.08e-21 92.4
Msa0361390 AT3G01080.2 48.718 78 39 1 242 319 327 403 3.94e-21 96.3
Msa0361390 AT3G01080.2 50.000 60 28 2 260 319 206 263 2.27e-11 66.2
Msa0361390 AT3G01080.1 48.718 78 39 1 242 319 289 365 3.96e-21 95.9
Msa0361390 AT3G01080.1 50.000 60 28 2 260 319 168 225 2.35e-11 65.9
Msa0361390 AT2G30250.1 51.282 78 37 1 242 319 311 387 4.44e-21 95.5
Msa0361390 AT2G46130.1 44.898 98 50 2 232 329 3 96 1.21e-20 87.4
Msa0361390 AT1G69310.4 44.444 81 44 1 236 316 124 203 3.91e-20 90.9
Msa0361390 AT1G69310.2 44.444 81 44 1 236 316 124 203 3.91e-20 90.9
Msa0361390 AT1G69310.1 44.444 81 44 1 236 316 124 203 3.91e-20 90.9
Msa0361390 AT5G13080.1 53.425 73 33 1 246 318 54 125 6.28e-20 86.7
Msa0361390 AT3G62340.1 53.247 77 35 1 243 319 102 177 2.23e-19 88.6
Msa0361390 AT4G30935.1 49.351 77 38 1 243 319 315 390 4.22e-19 90.1
Msa0361390 AT1G55600.1 47.436 78 40 1 243 320 291 367 8.02e-19 89.4
Msa0361390 AT2G23320.1 57.627 59 25 0 260 318 241 299 1.16e-18 87.0
Msa0361390 AT4G26440.1 40.594 101 57 2 243 343 356 453 1.43e-18 89.0
Msa0361390 AT1G29280.1 35.115 131 63 2 207 322 14 137 1.71e-18 85.5
Msa0361390 AT5G28650.1 53.968 63 29 0 255 317 258 320 2.39e-18 86.3
Msa0361390 AT4G24240.1 48.148 81 41 1 239 318 260 340 2.63e-18 86.7
Msa0361390 AT2G30590.1 45.122 82 41 1 244 321 294 375 3.25e-18 86.7
Msa0361390 AT2G44745.1 45.333 75 40 1 242 316 128 201 3.29e-18 84.0
Msa0361390 AT2G34830.1 41.748 103 59 1 225 326 180 282 5.07e-18 86.7
Msa0361390 AT4G23550.1 44.444 81 45 0 254 334 135 215 5.91e-18 85.1
Msa0361390 AT1G30650.1 41.748 103 59 1 225 326 182 284 5.98e-18 86.3
Msa0361390 AT2G34830.2 41.748 103 59 1 225 326 189 291 6.48e-18 86.3
Msa0361390 AT4G39410.1 44.737 76 41 1 242 317 206 280 8.25e-18 84.3
Msa0361390 AT5G64810.1 46.479 71 37 1 246 316 97 166 1.05e-17 81.6
Msa0361390 AT3G04670.1 52.381 63 30 0 255 317 258 320 1.19e-17 84.3
Msa0361390 AT2G37260.2 42.105 95 45 3 234 325 248 335 1.26e-17 84.7
Msa0361390 AT2G37260.2 46.667 75 36 3 260 332 84 156 2.21e-14 74.7
Msa0361390 AT2G37260.3 42.105 95 45 3 234 325 250 337 1.27e-17 84.7
Msa0361390 AT2G37260.3 46.667 75 36 3 260 332 86 158 2.12e-14 74.7
Msa0361390 AT4G01250.1 39.048 105 51 1 259 350 128 232 1.48e-17 83.6
Msa0361390 AT2G37260.1 42.105 95 45 3 234 325 330 417 1.99e-17 84.7
Msa0361390 AT2G37260.1 46.667 75 36 3 260 332 166 238 3.08e-14 75.1
Msa0361390 AT2G46130.2 41.837 98 49 3 232 329 3 92 2.47e-17 77.8
Msa0361390 AT3G58710.1 51.429 70 34 0 250 319 62 131 2.72e-17 82.4
Msa0361390 AT3G58710.2 51.429 70 34 0 250 319 61 130 3.03e-17 82.0
Msa0361390 AT4G31550.1 44.737 76 42 0 241 316 228 303 3.48e-17 82.8
Msa0361390 AT4G31550.2 44.737 76 42 0 241 316 227 302 3.74e-17 82.8
Msa0361390 AT2G24570.1 44.737 76 42 0 241 316 225 300 4.87e-17 82.4
Msa0361390 AT5G52830.1 44.156 77 43 0 253 329 159 235 2.41e-16 80.9
Msa0361390 AT1G69310.3 40.741 81 43 2 236 316 124 199 3.85e-15 76.3
Msa0361390 AT5G45260.1 43.434 99 49 3 238 334 1192 1285 2.32e-14 76.6
Msa0361390 AT5G45050.1 43.678 87 38 1 259 334 1180 1266 6.11e-14 75.1
Msa0361390 AT5G45050.4 43.678 87 38 1 259 334 1041 1127 6.20e-14 75.1
Msa0361390 AT5G45050.2 43.678 87 38 1 259 334 1152 1238 6.63e-14 75.1
Msa0361390 AT5G43290.1 40.244 82 47 2 240 320 94 174 7.70e-14 72.0
Msa0361390 AT4G31800.3 30.457 197 102 6 100 296 52 213 8.54e-14 71.2
Msa0361390 AT2G21900.1 42.424 66 37 1 254 319 104 168 3.75e-13 68.9
Msa0361390 AT2G46400.1 43.210 81 44 1 236 314 81 161 2.74e-12 67.8
Msa0361390 AT3G01080.3 50.000 60 28 2 260 319 206 263 1.19e-11 66.2
Msa0361390 AT2G40740.1 42.500 80 42 2 260 335 174 253 4.48e-11 64.3
Msa0361390 AT2G40740.3 42.500 80 42 2 260 335 183 262 5.46e-11 63.9

Find 73 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTATGCTTTATTGCAATTC+TGG 0.191922 3_1:-51807128 None:intergenic
CATAAATTTCTGAGCCAAAA+AGG 0.223319 3_1:-51806926 None:intergenic
CTTGATGGAGTGTGATAAAA+AGG 0.244429 3_1:+51805047 Msa0361390:CDS
GCTGCATAATATGCTCTTCT+AGG 0.248057 3_1:-51804630 None:intergenic
GCAGCATCAATGCTACTTTC+AGG 0.315857 3_1:+51806712 Msa0361390:CDS
GGATGTCAATGGAGAAAATA+TGG 0.325975 3_1:+51805835 Msa0361390:CDS
AGCAAGATCAGAAGCTAATA+TGG 0.333642 3_1:+51805263 Msa0361390:CDS
GATCCACTTTCTAATATTGT+TGG 0.346118 3_1:-51806766 None:intergenic
TTAGTAGGACCATTATTGTT+TGG 0.374768 3_1:-51807090 None:intergenic
GCTCCATTTGGTGTAGGGTT+AGG 0.385260 3_1:-51803575 None:intergenic
AACAATAATGGTCCTACTAA+TGG 0.392733 3_1:+51807093 Msa0361390:CDS
TGTAGGGTTAGGTCATTAAC+TGG 0.394243 3_1:-51803564 None:intergenic
GTATATACTTGCTTCCGAAC+TGG 0.394378 3_1:-51805925 None:intergenic
ACTTCCAATGATGGAAGTTA+TGG 0.397710 3_1:-51807058 None:intergenic
GGTCCTACTAATGGTACAAT+TGG 0.397957 3_1:+51807102 Msa0361390:CDS
AAACCATCTGCACTTGTCAT+TGG 0.402705 3_1:-51806736 None:intergenic
TGCTGAAGATAGAAGTGTTT+TGG 0.402931 3_1:+51806615 Msa0361390:CDS
TTTGTTGCTAGGAGAAATCT+TGG 0.415907 3_1:-51803733 None:intergenic
CCCATGTTCAAGAATGGCCT+TGG 0.418842 3_1:-51804979 None:intergenic
GCTGCCATAACTTCCATCAT+TGG 0.425352 3_1:+51807054 Msa0361390:CDS
ACTAGAGCAGAAGTGAATTT+CGG 0.430200 3_1:-51807030 None:intergenic
AATTCAAATCCAAACAATAA+TGG 0.432073 3_1:+51807081 Msa0361390:CDS
AAGAATTCACCCTTGGAACT+TGG 0.434846 3_1:-51805179 None:intergenic
ATTTGAATTACTTCCAATGA+TGG 0.439445 3_1:-51807067 None:intergenic
CAAGCAAATAAAGCATTTCA+AGG 0.441399 3_1:+51805144 Msa0361390:CDS
GATTTCTCCTAGCAACAAAC+TGG 0.442717 3_1:+51803737 Msa0361390:CDS
GTTTGAGAGAGCTAATTGAT+AGG 0.446725 3_1:+51804587 Msa0361390:CDS
CTATCATCCAGTTTGTTGCT+AGG 0.450663 3_1:-51803744 None:intergenic
GTCATTTGCAATGATACTAT+AGG 0.455756 3_1:+51803426 Msa0361390:CDS
TGACCTAACCCTACACCAAA+TGG 0.459298 3_1:+51803572 Msa0361390:CDS
TCCAAGGGTGAATTCTTTCA+AGG 0.464827 3_1:+51805185 Msa0361390:CDS
GCTTATTATCGTTGCACAAT+GGG 0.468330 3_1:+51805892 Msa0361390:CDS
TCCAAGGCCATTCTTGAACA+TGG 0.473443 3_1:+51804978 Msa0361390:CDS
GCAAAACCCATGTTCAAGAA+TGG 0.479173 3_1:-51804985 None:intergenic
TCTAGTGTGATAGTTGGAAA+TGG 0.482456 3_1:-51806832 None:intergenic
TCTCCAATTGTACCATTAGT+AGG 0.483209 3_1:-51807105 None:intergenic
CTACGTGATGATGCTCCATT+TGG 0.485074 3_1:-51803587 None:intergenic
CCAAGGCCATTCTTGAACAT+GGG 0.488187 3_1:+51804979 Msa0361390:CDS
CCAAGGGTGAATTCTTTCAA+GGG 0.492785 3_1:+51805186 Msa0361390:CDS
GTGCAACGATAATAAGCTCT+TGG 0.499916 3_1:-51805886 None:intergenic
TATACAAGAGAAGACTGAAA+AGG 0.501005 3_1:+51805098 Msa0361390:CDS
GAGAAAATATGGACAGAAGA+TGG 0.503010 3_1:+51805846 Msa0361390:CDS
TATGGACAGAAGATGGCAAA+GGG 0.509004 3_1:+51805853 Msa0361390:CDS
TGGGCACTGCTTGTCCAGTT+CGG 0.509323 3_1:+51805911 Msa0361390:CDS
CGATAATAAGCTCTTGGACA+TGG 0.509444 3_1:-51805880 None:intergenic
AATCCAACAATATTAGAAAG+TGG 0.511191 3_1:+51806763 Msa0361390:CDS
GTGAGATCTAGTGTGATAGT+TGG 0.515834 3_1:-51806838 None:intergenic
GGCTTTCAAACCAAGTTCCA+AGG 0.521439 3_1:+51805169 Msa0361390:CDS
CCCTTGAAAGAATTCACCCT+TGG 0.522368 3_1:-51805186 None:intergenic
TTATGCAGCTGAAGCAGAAA+CGG 0.537748 3_1:+51804644 Msa0361390:CDS
GATGATGCTCCATTTGGTGT+AGG 0.540710 3_1:-51803581 None:intergenic
TTGCTGTTGGTGGTAGAGCA+TGG 0.541988 3_1:-51806663 None:intergenic
ATGATGCTCCATTTGGTGTA+GGG 0.544067 3_1:-51803580 None:intergenic
AGATTTCAGATGGATGTCAA+TGG 0.544482 3_1:+51805824 Msa0361390:intron
AATGTATCACAGATTTCAGA+TGG 0.548456 3_1:+51805814 Msa0361390:intron
AGCTTATTATCGTTGCACAA+TGG 0.549784 3_1:+51805891 Msa0361390:CDS
CTGCATAATATGCTCTTCTA+GGG 0.557538 3_1:-51804629 None:intergenic
ATGGTATGAATATGATTCCA+AGG 0.557677 3_1:+51804962 Msa0361390:CDS
CAAATAAAGCATTTCAAGGG+TGG 0.566998 3_1:+51805148 Msa0361390:CDS
GGACCAATGACAAGTGCAGA+TGG 0.572451 3_1:+51806733 Msa0361390:CDS
GAAGCAACTGAAGAAAAGAA+TGG 0.574998 3_1:+51804943 Msa0361390:CDS
TGATGCAAGGAACGAAAATG+AGG 0.583927 3_1:+51803776 Msa0361390:CDS
ATAGAGAATATTCTGATGCA+AGG 0.587268 3_1:+51803763 Msa0361390:CDS
GTTGCCATGGTGTGTGAACA+AGG 0.603956 3_1:-51806793 None:intergenic
GCTTTCAAACCAAGTTCCAA+GGG 0.616257 3_1:+51805170 Msa0361390:CDS
AAGCAAATAAAGCATTTCAA+GGG 0.619803 3_1:+51805145 Msa0361390:CDS
TGAAGCTGAGAGTGTTGCCA+TGG 0.636245 3_1:-51806806 None:intergenic
ACCACCAACAGCAAAAGCAA+TGG 0.641019 3_1:+51806672 Msa0361390:CDS
ATATGGACAGAAGATGGCAA+AGG 0.645418 3_1:+51805852 Msa0361390:CDS
ACTCCCTTGTTCACACACCA+TGG 0.651056 3_1:+51806789 Msa0361390:CDS
GCAGAAACGGAGTAAACTTG+AGG 0.652579 3_1:+51804657 Msa0361390:CDS
ATGGACAGAAGATGGCAAAG+GGG 0.709928 3_1:+51805854 Msa0361390:CDS
TTGCCATGGTGTGTGAACAA+GGG 0.728086 3_1:-51806792 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAATAAAATTGCAAAA+TGG - chr3_1:51803645-51803664 None:intergenic 10.0%
!! TATGCTTATTTATTAAATAT+AGG + chr3_1:51806582-51806601 Msa0361390:intron 10.0%
!!! TAGTTTTTTATATTATTTCC+AGG - chr3_1:51804022-51804041 None:intergenic 15.0%
!!! AGAATTTTTCAATAAATAGT+TGG - chr3_1:51804273-51804292 None:intergenic 15.0%
!! CATTAATAATCATTGTATAA+TGG - chr3_1:51804327-51804346 None:intergenic 15.0%
!! CAAATATATTCTTAATGTAA+AGG - chr3_1:51804503-51804522 None:intergenic 15.0%
!!! AAGTTTTGAAAAATATAAAC+AGG - chr3_1:51805317-51805336 None:intergenic 15.0%
!!! TTAATGTTTTGGATAAATTT+TGG + chr3_1:51805633-51805652 Msa0361390:intron 15.0%
!! ATGTAATCAAATTTCATAAA+AGG - chr3_1:51805961-51805980 None:intergenic 15.0%
!!! TATTTCAACTACATTAATTT+TGG - chr3_1:51806026-51806045 None:intergenic 15.0%
!!! GTAGTTGAAATATTTTAAAT+TGG + chr3_1:51806034-51806053 Msa0361390:intron 15.0%
!!! TTACAAATATTTGTTTCTTT+TGG + chr3_1:51806070-51806089 Msa0361390:intron 15.0%
!! TATTAAAAAAAAAATAGCGA+AGG + chr3_1:51806122-51806141 Msa0361390:intron 15.0%
!! ATTAAAAAAAAAATAGCGAA+GGG + chr3_1:51806123-51806142 Msa0361390:intron 15.0%
!! AAGTTGTAAAAAGATTATTA+AGG - chr3_1:51806360-51806379 None:intergenic 15.0%
!! TAATGGAAAAAGACTAATTA+TGG + chr3_1:51803506-51803525 Msa0361390:CDS 20.0%
!!! TTTTACTAAAAGAGCTAATT+TGG + chr3_1:51803666-51803685 Msa0361390:intron 20.0%
!!! TGTTTTGATTTTGTTAAGAA+TGG + chr3_1:51803837-51803856 Msa0361390:intron 20.0%
!!! GAATTGAGTTTTACAAATAT+TGG + chr3_1:51803940-51803959 Msa0361390:intron 20.0%
!!! AATAGTTGGCAAATTTTAAT+TGG - chr3_1:51804259-51804278 None:intergenic 20.0%
!! TTCATTCAAATAATCGAAAA+CGG + chr3_1:51804376-51804395 Msa0361390:intron 20.0%
!!! ATTTTTCCTGTAATTAAATC+CGG - chr3_1:51804725-51804744 None:intergenic 20.0%
!!! TAAGATTTTGTTCTTACAAA+TGG + chr3_1:51804844-51804863 Msa0361390:intron 20.0%
!!! TTAACAAATTTTAGCATAGA+TGG + chr3_1:51805367-51805386 Msa0361390:intron 20.0%
!! TTCAGTCATTATTTCAAATT+TGG + chr3_1:51805511-51805530 Msa0361390:intron 20.0%
!! ATTAAAGTGACGTTAATAAT+AGG + chr3_1:51806160-51806179 Msa0361390:intron 20.0%
!!! TAATAAAGACACATTTTCAT+TGG + chr3_1:51806277-51806296 Msa0361390:intron 20.0%
!!! AGATTATCTTTAAAGAATGA+CGG - chr3_1:51806319-51806338 None:intergenic 20.0%
!! AAATTTGTATCTCAAGATTA+AGG + chr3_1:51806392-51806411 Msa0361390:intron 20.0%
!! ACTTACTTAGATCAAATTTA+AGG + chr3_1:51806455-51806474 Msa0361390:intron 20.0%
!!! TTTTCCATTCCAAAAATATT+CGG - chr3_1:51806958-51806977 None:intergenic 20.0%
!! AATTCAAATCCAAACAATAA+TGG + chr3_1:51807081-51807100 Msa0361390:CDS 20.0%
! AAAAAGACTAATTATGGATG+AGG + chr3_1:51803512-51803531 Msa0361390:CDS 25.0%
!! AAAATGAGGTATGTTTTTCT+TGG + chr3_1:51803790-51803809 Msa0361390:intron 25.0%
! AAAGAAGAATGATCATTTGA+TGG - chr3_1:51803919-51803938 None:intergenic 25.0%
!! GAGTTTTACAAATATTGGAT+TGG + chr3_1:51803945-51803964 Msa0361390:intron 25.0%
! TACTTCACAAAAATGTAATG+TGG + chr3_1:51804052-51804071 Msa0361390:intron 25.0%
! ACTTCACAAAAATGTAATGT+GGG + chr3_1:51804053-51804072 Msa0361390:intron 25.0%
! CAAAGTTAAACACAAAACTA+CGG + chr3_1:51804083-51804102 Msa0361390:intron 25.0%
!! TAACATTTTTCTTCGCTATA+AGG - chr3_1:51804429-51804448 None:intergenic 25.0%
! TAGCGAAGAAAAATGTTATT+TGG + chr3_1:51804431-51804450 Msa0361390:intron 25.0%
! CTAGTTTAATGACTAACATA+TGG + chr3_1:51804895-51804914 Msa0361390:intron 25.0%
! TAATGACTAACATATGGATT+TGG + chr3_1:51804901-51804920 Msa0361390:intron 25.0%
!! AAGCAAATAAAGCATTTCAA+GGG + chr3_1:51805145-51805164 Msa0361390:CDS 25.0%
!!! ATTTTAGCATAGATGGTATT+TGG + chr3_1:51805374-51805393 Msa0361390:intron 25.0%
! CTAGTGTTAAACAAATTCTA+CGG - chr3_1:51805701-51805720 None:intergenic 25.0%
! CAGCAATTATATAATTCACA+TGG - chr3_1:51805767-51805786 None:intergenic 25.0%
! ATAGGTTATCCATAGAAAAA+TGG + chr3_1:51806189-51806208 Msa0361390:intron 25.0%
!!! ATGTGTCTTTATTAGTTTGT+GGG - chr3_1:51806271-51806290 None:intergenic 25.0%
!! AATGTGTCTTTATTAGTTTG+TGG - chr3_1:51806272-51806291 None:intergenic 25.0%
!! GATTATCTTTAAAGAATGAC+GGG - chr3_1:51806318-51806337 None:intergenic 25.0%
!! AATCTTTTTACAACTTTGAG+AGG + chr3_1:51806364-51806383 Msa0361390:intron 25.0%
! AGTGTATAACTCTTTGTTAA+TGG - chr3_1:51806531-51806550 None:intergenic 25.0%
! AATCCAACAATATTAGAAAG+TGG + chr3_1:51806763-51806782 Msa0361390:CDS 25.0%
! ATAAATTTCTGAGCCAAAAA+GGG - chr3_1:51806928-51806947 None:intergenic 25.0%
! ATTTGAATTACTTCCAATGA+TGG - chr3_1:51807070-51807089 None:intergenic 25.0%
GTCATTTGCAATGATACTAT+AGG + chr3_1:51803426-51803445 Msa0361390:CDS 30.0%
! TCTCAAGTCATGTCTTTTAA+TGG + chr3_1:51803489-51803508 Msa0361390:CDS 30.0%
ATAGAGAATATTCTGATGCA+AGG + chr3_1:51803763-51803782 Msa0361390:CDS 30.0%
! ATGATCATTTGATGGATGAT+AGG - chr3_1:51803911-51803930 None:intergenic 30.0%
ATTGGATATGTGATATGTGT+AGG + chr3_1:51803963-51803982 Msa0361390:intron 30.0%
AATGTGTGTGGCTAAAAAAT+AGG + chr3_1:51804214-51804233 Msa0361390:intron 30.0%
!!! AACAATTTTGTTGTTCGACA+AGG + chr3_1:51804456-51804475 Msa0361390:intron 30.0%
!! AAAAAATCAACTAGTTCTGC+CGG + chr3_1:51804703-51804722 Msa0361390:intron 30.0%
CTTGAACATATAACAATGAG+TGG - chr3_1:51804871-51804890 None:intergenic 30.0%
ATGGTATGAATATGATTCCA+AGG + chr3_1:51804962-51804981 Msa0361390:CDS 30.0%
!!! ATGTTTTTTCTCTCTTGTGA+AGG - chr3_1:51805021-51805040 None:intergenic 30.0%
TTCACAAGAGAGAAAAAACA+TGG + chr3_1:51805020-51805039 Msa0361390:CDS 30.0%
!! AAAAAACATGGTTGACTTGA+TGG + chr3_1:51805032-51805051 Msa0361390:CDS 30.0%
TTGATGGAGTGTGATAAAAA+GGG + chr3_1:51805048-51805067 Msa0361390:CDS 30.0%
TATACAAGAGAAGACTGAAA+AGG + chr3_1:51805098-51805117 Msa0361390:CDS 30.0%
! CAAGCAAATAAAGCATTTCA+AGG + chr3_1:51805144-51805163 Msa0361390:CDS 30.0%
TAGAAAAGTTGAAATAGCGA+CGG + chr3_1:51805411-51805430 Msa0361390:intron 30.0%
AATGTATCACAGATTTCAGA+TGG + chr3_1:51805814-51805833 Msa0361390:intron 30.0%
TTGCACATATAGAAAAGAGT+CGG + chr3_1:51805999-51806018 Msa0361390:intron 30.0%
GTTAATAATAGGTGACACAT+AGG + chr3_1:51806171-51806190 Msa0361390:intron 30.0%
GTTATCCATAGAAAAATGGT+GGG + chr3_1:51806193-51806212 Msa0361390:intron 30.0%
!! AATTACCCACCATTTTTCTA+TGG - chr3_1:51806201-51806220 None:intergenic 30.0%
!! CACATAAGTAGATTTTCAAG+TGG + chr3_1:51806243-51806262 Msa0361390:intron 30.0%
! AAAGACACATTTTCATTGGT+TGG + chr3_1:51806281-51806300 Msa0361390:intron 30.0%
!! GTTTTGGTAACAACATATGA+AGG + chr3_1:51806631-51806650 Msa0361390:CDS 30.0%
GATCCACTTTCTAATATTGT+TGG - chr3_1:51806769-51806788 None:intergenic 30.0%
CATAAATTTCTGAGCCAAAA+AGG - chr3_1:51806929-51806948 None:intergenic 30.0%
TTAGTAGGACCATTATTGTT+TGG - chr3_1:51807093-51807112 None:intergenic 30.0%
AACAATAATGGTCCTACTAA+TGG + chr3_1:51807093-51807112 Msa0361390:CDS 30.0%
TGAGAAGAAGAAGAAGAATG+TGG - chr3_1:51803474-51803493 None:intergenic 35.0%
TTTGTTGCTAGGAGAAATCT+TGG - chr3_1:51803736-51803755 None:intergenic 35.0%
!! TTATAAAGTTGAGTTGAGCC+TGG + chr3_1:51804001-51804020 Msa0361390:intron 35.0%
!! TTTTTAGCCACACACATTCA+TGG - chr3_1:51804212-51804231 None:intergenic 35.0%
TGTGGCTAAAAAATAGGAAG+TGG + chr3_1:51804220-51804239 Msa0361390:intron 35.0%
TCGCTATAAGGCTTATTCTA+GGG - chr3_1:51804417-51804436 None:intergenic 35.0%
TTCGCTATAAGGCTTATTCT+AGG - chr3_1:51804418-51804437 None:intergenic 35.0%
!! GTTGATTTTCAGCATTCGTT+TGG - chr3_1:51804567-51804586 None:intergenic 35.0%
GTTTGAGAGAGCTAATTGAT+AGG + chr3_1:51804587-51804606 Msa0361390:CDS 35.0%
CTGCATAATATGCTCTTCTA+GGG - chr3_1:51804632-51804651 None:intergenic 35.0%
GAAGCAACTGAAGAAAAGAA+TGG + chr3_1:51804943-51804962 Msa0361390:CDS 35.0%
CTTGATGGAGTGTGATAAAA+AGG + chr3_1:51805047-51805066 Msa0361390:CDS 35.0%
! ACTCAAAAGTTTTGCAGCAA+TGG + chr3_1:51805072-51805091 Msa0361390:CDS 35.0%
! CAAATAAAGCATTTCAAGGG+TGG + chr3_1:51805148-51805167 Msa0361390:CDS 35.0%
AGCAAGATCAGAAGCTAATA+TGG + chr3_1:51805263-51805282 Msa0361390:CDS 35.0%
! TTCCCTTGAGATTTTCAAAC+CGG + chr3_1:51805538-51805557 Msa0361390:intron 35.0%
! TACTTAAAGAGAGACTTGGT+TGG - chr3_1:51805566-51805585 None:intergenic 35.0%
ACACTACTTAAAGAGAGACT+TGG - chr3_1:51805570-51805589 None:intergenic 35.0%
AAGTCTCTCTTTAAGTAGTG+TGG + chr3_1:51805569-51805588 Msa0361390:intron 35.0%
CTTTAAGTAGTGTGGACAAA+AGG + chr3_1:51805577-51805596 Msa0361390:intron 35.0%
AGATTTCAGATGGATGTCAA+TGG + chr3_1:51805824-51805843 Msa0361390:intron 35.0%
GGATGTCAATGGAGAAAATA+TGG + chr3_1:51805835-51805854 Msa0361390:CDS 35.0%
GAGAAAATATGGACAGAAGA+TGG + chr3_1:51805846-51805865 Msa0361390:CDS 35.0%
AGCTTATTATCGTTGCACAA+TGG + chr3_1:51805891-51805910 Msa0361390:CDS 35.0%
GCTTATTATCGTTGCACAAT+GGG + chr3_1:51805892-51805911 Msa0361390:CDS 35.0%
GGTTATCCATAGAAAAATGG+TGG + chr3_1:51806192-51806211 Msa0361390:intron 35.0%
!!! TGCTGAAGATAGAAGTGTTT+TGG + chr3_1:51806615-51806634 Msa0361390:CDS 35.0%
TCTAGTGTGATAGTTGGAAA+TGG - chr3_1:51806835-51806854 None:intergenic 35.0%
TCACAAAAACAACTACAGCA+AGG + chr3_1:51806883-51806902 Msa0361390:CDS 35.0%
! ATGTCAGCTCCGAATATTTT+TGG + chr3_1:51806946-51806965 Msa0361390:CDS 35.0%
!!! AGCTCCGAATATTTTTGGAA+TGG + chr3_1:51806951-51806970 Msa0361390:CDS 35.0%
ACTAGAGCAGAAGTGAATTT+CGG - chr3_1:51807033-51807052 None:intergenic 35.0%
! ACTTCCAATGATGGAAGTTA+TGG - chr3_1:51807061-51807080 None:intergenic 35.0%
TCTCCAATTGTACCATTAGT+AGG - chr3_1:51807108-51807127 None:intergenic 35.0%
TGTAGGGTTAGGTCATTAAC+TGG - chr3_1:51803567-51803586 None:intergenic 40.0%
!! ATGATGCTCCATTTGGTGTA+GGG - chr3_1:51803583-51803602 None:intergenic 40.0%
GATTTCTCCTAGCAACAAAC+TGG + chr3_1:51803737-51803756 Msa0361390:CDS 40.0%
!! CTATCATCCAGTTTGTTGCT+AGG - chr3_1:51803747-51803766 None:intergenic 40.0%
TGATGCAAGGAACGAAAATG+AGG + chr3_1:51803776-51803795 Msa0361390:CDS 40.0%
! GTAGAAAACCTGGACTTGTT+AGG - chr3_1:51804188-51804207 None:intergenic 40.0%
CATTCATGGTGTAGAAAACC+TGG - chr3_1:51804198-51804217 None:intergenic 40.0%
TTCTACACCATGAATGTGTG+TGG + chr3_1:51804202-51804221 Msa0361390:intron 40.0%
AGCAGCATACTGTATACACA+AGG - chr3_1:51804527-51804546 None:intergenic 40.0%
GCTGCATAATATGCTCTTCT+AGG - chr3_1:51804633-51804652 None:intergenic 40.0%
TTATGCAGCTGAAGCAGAAA+CGG + chr3_1:51804644-51804663 Msa0361390:CDS 40.0%
GTTCTGCCGGATTTAATTAC+AGG + chr3_1:51804716-51804735 Msa0361390:intron 40.0%
GCAAAACCCATGTTCAAGAA+TGG - chr3_1:51804988-51805007 None:intergenic 40.0%
GCTTTCAAACCAAGTTCCAA+GGG + chr3_1:51805170-51805189 Msa0361390:CDS 40.0%
AAGAATTCACCCTTGGAACT+TGG - chr3_1:51805182-51805201 None:intergenic 40.0%
TCCAAGGGTGAATTCTTTCA+AGG + chr3_1:51805185-51805204 Msa0361390:CDS 40.0%
CCAAGGGTGAATTCTTTCAA+GGG + chr3_1:51805186-51805205 Msa0361390:CDS 40.0%
GTTGAAATAGCGACGGAAAA+AGG + chr3_1:51805418-51805437 Msa0361390:intron 40.0%
!! CACCGGTTTGAAAATCTCAA+GGG - chr3_1:51805543-51805562 None:intergenic 40.0%
TATTGAGCCTCTACTTCTAG+AGG + chr3_1:51805601-51805620 Msa0361390:intron 40.0%
! GGACGGCATCATTAATGTTT+TGG + chr3_1:51805622-51805641 Msa0361390:intron 40.0%
ATATGGACAGAAGATGGCAA+AGG + chr3_1:51805852-51805871 Msa0361390:CDS 40.0%
TATGGACAGAAGATGGCAAA+GGG + chr3_1:51805853-51805872 Msa0361390:CDS 40.0%
CGATAATAAGCTCTTGGACA+TGG - chr3_1:51805883-51805902 None:intergenic 40.0%
GTGCAACGATAATAAGCTCT+TGG - chr3_1:51805889-51805908 None:intergenic 40.0%
GTATATACTTGCTTCCGAAC+TGG - chr3_1:51805928-51805947 None:intergenic 40.0%
!! GACACATTTTCATTGGTTGG+TGG + chr3_1:51806284-51806303 Msa0361390:intron 40.0%
AAACCATCTGCACTTGTCAT+TGG - chr3_1:51806739-51806758 None:intergenic 40.0%
GTGAGATCTAGTGTGATAGT+TGG - chr3_1:51806841-51806860 None:intergenic 40.0%
ATTTCTGAGCCAAAAAGGGT+TGG - chr3_1:51806924-51806943 None:intergenic 40.0%
GGTCCTACTAATGGTACAAT+TGG + chr3_1:51807102-51807121 Msa0361390:CDS 40.0%
TGACCTAACCCTACACCAAA+TGG + chr3_1:51803572-51803591 Msa0361390:CDS 45.0%
!! GATGATGCTCCATTTGGTGT+AGG - chr3_1:51803584-51803603 None:intergenic 45.0%
! CTACGTGATGATGCTCCATT+TGG - chr3_1:51803590-51803609 None:intergenic 45.0%
GCAGAAACGGAGTAAACTTG+AGG + chr3_1:51804657-51804676 Msa0361390:CDS 45.0%
TCCAAGGCCATTCTTGAACA+TGG + chr3_1:51804978-51804997 Msa0361390:CDS 45.0%
CCAAGGCCATTCTTGAACAT+GGG + chr3_1:51804979-51804998 Msa0361390:CDS 45.0%
GGCTTTCAAACCAAGTTCCA+AGG + chr3_1:51805169-51805188 Msa0361390:CDS 45.0%
CCCTTGAAAGAATTCACCCT+TGG - chr3_1:51805189-51805208 None:intergenic 45.0%
!! GCACCGGTTTGAAAATCTCA+AGG - chr3_1:51805544-51805563 None:intergenic 45.0%
ATGGACAGAAGATGGCAAAG+GGG + chr3_1:51805854-51805873 Msa0361390:CDS 45.0%
ACCACCAACAGCAAAAGCAA+TGG + chr3_1:51806672-51806691 Msa0361390:CDS 45.0%
!! GATGCCATTGCTTTTGCTGT+TGG - chr3_1:51806679-51806698 None:intergenic 45.0%
!! GCAGCATCAATGCTACTTTC+AGG + chr3_1:51806712-51806731 Msa0361390:CDS 45.0%
TTGCCATGGTGTGTGAACAA+GGG - chr3_1:51806795-51806814 None:intergenic 45.0%
! CAACCTTCTCCAACCCTTTT+TGG + chr3_1:51806912-51806931 Msa0361390:CDS 45.0%
GCTGCCATAACTTCCATCAT+TGG + chr3_1:51807054-51807073 Msa0361390:CDS 45.0%
!! AAAAAGTAATTTAATTATAT+TGG + chr3_1:51804794-51804813 Msa0361390:intron 5.0%
!! GCTCCATTTGGTGTAGGGTT+AGG - chr3_1:51803578-51803597 None:intergenic 50.0%
!! ACCTGGACTTGTTAGGTGTC+AGG - chr3_1:51804181-51804200 None:intergenic 50.0%
CCCATGTTCAAGAATGGCCT+TGG - chr3_1:51804982-51805001 None:intergenic 50.0%
! AAGAGAGACTTGGTTGGCAC+CGG - chr3_1:51805560-51805579 None:intergenic 50.0%
! GAGCCTCTACTTCTAGAGGA+CGG + chr3_1:51805605-51805624 Msa0361390:intron 50.0%
! ATGCCGTCCTCTAGAAGTAG+AGG - chr3_1:51805611-51805630 None:intergenic 50.0%
!! TTGCTGTTGGTGGTAGAGCA+TGG - chr3_1:51806666-51806685 None:intergenic 50.0%
!!! GCCATTGCTTTTGCTGTTGG+TGG - chr3_1:51806676-51806695 None:intergenic 50.0%
GGACCAATGACAAGTGCAGA+TGG + chr3_1:51806733-51806752 Msa0361390:CDS 50.0%
ACTCCCTTGTTCACACACCA+TGG + chr3_1:51806789-51806808 Msa0361390:CDS 50.0%
GTTGCCATGGTGTGTGAACA+AGG - chr3_1:51806796-51806815 None:intergenic 50.0%
!! TGAAGCTGAGAGTGTTGCCA+TGG - chr3_1:51806809-51806828 None:intergenic 50.0%
GAGCCAAAAAGGGTTGGAGA+AGG - chr3_1:51806918-51806937 None:intergenic 50.0%
GCCTGACACCTAACAAGTCC+AGG + chr3_1:51804177-51804196 Msa0361390:intron 55.0%
! TGGGCACTGCTTGTCCAGTT+CGG + chr3_1:51805911-51805930 Msa0361390:CDS 55.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 51803417 51807149 51803417 ID=Msa0361390;Name=Msa0361390
chr3_1 mRNA 51803417 51807149 51803417 ID=Msa0361390-mRNA-1;Parent=Msa0361390;Name=Msa0361390-mRNA-1;_AED=0.04;_eAED=0.06;_QI=0|0|0|1|1|1|6|0|476
chr3_1 exon 51803417 51803611 51803417 ID=Msa0361390-mRNA-1:exon:9266;Parent=Msa0361390-mRNA-1
chr3_1 exon 51803714 51803797 51803714 ID=Msa0361390-mRNA-1:exon:9267;Parent=Msa0361390-mRNA-1
chr3_1 exon 51804538 51804678 51804538 ID=Msa0361390-mRNA-1:exon:9268;Parent=Msa0361390-mRNA-1
chr3_1 exon 51804934 51805284 51804934 ID=Msa0361390-mRNA-1:exon:9269;Parent=Msa0361390-mRNA-1
chr3_1 exon 51805826 51805939 51805826 ID=Msa0361390-mRNA-1:exon:9270;Parent=Msa0361390-mRNA-1
chr3_1 exon 51806604 51807149 51806604 ID=Msa0361390-mRNA-1:exon:9271;Parent=Msa0361390-mRNA-1
chr3_1 CDS 51803417 51803611 51803417 ID=Msa0361390-mRNA-1:cds;Parent=Msa0361390-mRNA-1
chr3_1 CDS 51803714 51803797 51803714 ID=Msa0361390-mRNA-1:cds;Parent=Msa0361390-mRNA-1
chr3_1 CDS 51804538 51804678 51804538 ID=Msa0361390-mRNA-1:cds;Parent=Msa0361390-mRNA-1
chr3_1 CDS 51804934 51805284 51804934 ID=Msa0361390-mRNA-1:cds;Parent=Msa0361390-mRNA-1
chr3_1 CDS 51805826 51805939 51805826 ID=Msa0361390-mRNA-1:cds;Parent=Msa0361390-mRNA-1
chr3_1 CDS 51806604 51807149 51806604 ID=Msa0361390-mRNA-1:cds;Parent=Msa0361390-mRNA-1
Gene Sequence

>Msa0361390

ATGGAAGAAGTCATTTGCAATGATACTATAGGAAATTCTAGTGTTGTTGAAGTTCCACATTCTTCTTCTTCTTCTCAAGTCATGTCTTTTAATGGAAAAAGACTAATTATGGATGAGGTTGATTTCTTTGCAGAGAAGAAAATGAGTCCAGTTAATGACCTAACCCTACACCAAATGGAGCATCATCACGTAGATACTAGTTTAGATCTTCTCACCAAGATTTCTCCTAGCAACAAACTGGATGATAGAGAATATTCTGATGCAAGGAACGAAAATGAGTATGCTGCTGTGTTAGCTAAATTGCACCAAACGAATGCTGAAAATCAACGTTTGAGAGAGCTAATTGATAGGCTTAGAATTGATCACAATGCCCTAGAAGAGCATATTATGCAGCTGAAGCAGAAACGGAGTAAACTTGAGATTAATGATGAAGCAACTGAAGAAAAGAATGGTATGAATATGATTCCAAGGCCATTCTTGAACATGGGTTTTGCTAAAGATGAGCCTTCACAAGAGAGAAAAAACATGGTTGACTTGATGGAGTGTGATAAAAAGGGTACTCAAAAGTTTTGCAGCAATGGAGTTATACAAGAGAAGACTGAAAAGGAAGAAGATCATCATGAGAATTCACAAGCAAATAAAGCATTTCAAGGGTGGCTTTCAAACCAAGTTCCAAGGGTGAATTCTTTCAAGGGTGTTGATGATCAAGCTTCAGAATCAATGATTAAGAAAGCTCGTGTCTCAGTTAGAGCAAGATCAGAAGCTAATATGATTTCAGATGGATGTCAATGGAGAAAATATGGACAGAAGATGGCAAAGGGGAATCCATGTCCAAGAGCTTATTATCGTTGCACAATGGGCACTGCTTGTCCAGTTCGGAAGCAAGTTCAAAGATGTGCTGAAGATAGAAGTGTTTTGGTAACAACATATGAAGGACAACATAACCATGCTCTACCACCAACAGCAAAAGCAATGGCATCAACAACAACATCAGCAGCATCAATGCTACTTTCAGGACCAATGACAAGTGCAGATGGTTTAATAAATCCAACAATATTAGAAAGTGGATCACTCCCTTGTTCACACACCATGGCAACACTCTCAGCTTCAGCTCCATTTCCAACTATCACACTAGATCTCACTGAAGAAGCTATCAATAATTCATCACAAAAACAACTACAGCAAGGACAGTTCAACCTTCTCCAACCCTTTTTGGCTCAGAAATTTATGTCAGCTCCGAATATTTTTGGAATGGAAAATGCTTCATTTGCTGATACAGTTAGTGCTGCAACAGCTGCTATGACTTCTGATCCGAAATTCACTTCTGCTCTAGTTGCTGCCATAACTTCCATCATTGGAAGTAATTCAAATCCAAACAATAATGGTCCTACTAATGGTACAATTGGAGACCAGAATTGCAATAAAGCATAG
Protein sequence

>Msa0361390

MEEVICNDTIGNSSVVEVPHSSSSSQVMSFNGKRLIMDEVDFFAEKKMSPVNDLTLHQMEHHHVDTSLDLLTKISPSNKLDDREYSDARNENEYAAVLAKLHQTNAENQRLRELIDRLRIDHNALEEHIMQLKQKRSKLEINDEATEEKNGMNMIPRPFLNMGFAKDEPSQERKNMVDLMECDKKGTQKFCSNGVIQEKTEKEEDHHENSQANKAFQGWLSNQVPRVNSFKGVDDQASESMIKKARVSVRARSEANMISDGCQWRKYGQKMAKGNPCPRAYYRCTMGTACPVRKQVQRCAEDRSVLVTTYEGQHNHALPPTAKAMASTTTSAASMLLSGPMTSADGLINPTILESGSLPCSHTMATLSASAPFPTITLDLTEEAINNSSQKQLQQGQFNLLQPFLAQKFMSAPNIFGMENASFADTVSAATAAMTSDPKFTSALVAAITSIIGSNSNPNNNGPTNGTIGDQNCNKA*