AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0408860

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0408860 MtrunA17_Chr3g0099641 90.966 476 30 4 2 474 3 468 0.0 852
Msa0408860 MtrunA17_Chr2g0288871 43.568 482 196 12 33 450 60 529 3.47e-96 300
Msa0408860 MtrunA17_Chr2g0322391 41.260 492 196 17 35 450 81 555 7.28e-91 288
Msa0408860 MtrunA17_Chr4g0075201 39.168 457 199 11 35 439 36 465 1.79e-88 279
Msa0408860 MtrunA17_Chr7g0270831 36.601 459 210 13 23 459 13 412 2.73e-70 229
Msa0408860 MtrunA17_Chr4g0025051 35.751 386 176 8 88 407 100 479 6.14e-61 209
Msa0408860 MtrunA17_Chr4g0025061 34.375 448 202 14 94 459 131 568 1.70e-60 208
Msa0408860 MtrunA17_Chr2g0302391 46.552 232 110 5 234 454 185 413 2.93e-58 198
Msa0408860 MtrunA17_Chr4g0024391 33.626 455 191 14 96 453 2 442 8.03e-56 193
Msa0408860 MtrunA17_Chr7g0216891 34.663 326 163 8 101 382 47 366 2.06e-43 161
Msa0408860 MtrunA17_Chr4g0051181 39.313 262 116 7 244 465 227 485 7.99e-43 158
Msa0408860 MtrunA17_Chr4g0060271 36.100 241 133 4 100 320 76 315 1.09e-38 148
Msa0408860 MtrunA17_Chr5g0419241 72.308 65 18 0 224 288 41 105 2.71e-29 110
Msa0408860 MtrunA17_Chr4g0001361 34.951 206 93 7 243 447 145 310 2.21e-28 114
Msa0408860 MtrunA17_Chr1g0150271 47.368 95 48 1 244 336 83 177 1.35e-25 105
Msa0408860 MtrunA17_Chr3g0136961 26.065 399 187 13 60 456 1 293 1.89e-25 105
Msa0408860 MtrunA17_Chr1g0150281 33.491 212 85 7 245 455 125 281 2.40e-24 102
Msa0408860 MtrunA17_Chr5g0432161 47.191 89 46 1 232 320 393 480 8.48e-24 104
Msa0408860 MtrunA17_Chr5g0432161 50.000 60 28 2 261 320 245 302 6.41e-12 67.8
Msa0408860 MtrunA17_Chr5g0445311 52.564 78 36 1 243 320 347 423 1.33e-23 103
Msa0408860 MtrunA17_Chr3g0101131 52.564 78 36 1 243 320 398 474 1.55e-23 103
Msa0408860 MtrunA17_Chr4g0004911 52.564 78 36 1 243 320 319 395 2.67e-23 102
Msa0408860 MtrunA17_Chr4g0004911 35.955 89 56 1 241 329 165 252 4.56e-13 71.2
Msa0408860 MtrunA17_Chr5g0447701 45.833 96 50 2 235 330 227 320 4.06e-23 100
Msa0408860 MtrunA17_Chr5g0447701 41.975 81 44 3 258 338 90 167 5.72e-11 64.3
Msa0408860 MtrunA17_Chr3g0106491 44.944 89 48 1 232 320 337 424 6.54e-23 101
Msa0408860 MtrunA17_Chr3g0106491 48.333 60 29 2 261 320 199 256 7.89e-12 67.4
Msa0408860 MtrunA17_Chr7g0218081 44.330 97 53 1 239 335 389 484 7.92e-23 101
Msa0408860 MtrunA17_Chr7g0218081 53.333 60 26 2 261 320 229 286 3.01e-13 72.0
Msa0408860 MtrunA17_Chr3g0079691 52.564 78 36 1 243 320 478 554 1.19e-22 101
Msa0408860 MtrunA17_Chr3g0079691 42.683 82 44 3 261 341 281 360 5.89e-14 74.3
Msa0408860 MtrunA17_Chr5g0418191 46.739 92 47 2 238 329 298 387 1.95e-22 99.4
Msa0408860 MtrunA17_Chr5g0418191 47.222 72 36 2 261 332 152 221 2.58e-13 71.6
Msa0408860 MtrunA17_Chr7g0243891 44.554 101 50 2 225 320 334 433 2.05e-22 100
Msa0408860 MtrunA17_Chr7g0243891 41.333 75 42 2 261 335 217 289 7.31e-11 64.3
Msa0408860 MtrunA17_Chr2g0294231 48.148 81 41 1 244 324 187 266 5.62e-22 97.4
Msa0408860 MtrunA17_Chr4g0051881 43.956 91 50 1 247 337 165 254 6.26e-22 96.7
Msa0408860 MtrunA17_Chr2g0333851 29.630 216 99 5 237 447 142 309 7.71e-22 95.9
Msa0408860 MtrunA17_Chr4g0042831 45.631 103 52 3 239 339 257 357 8.12e-22 97.1
Msa0408860 MtrunA17_Chr4g0042831 42.500 80 43 2 261 340 146 222 2.67e-11 65.1
Msa0408860 MtrunA17_Chr7g0270191 42.857 98 51 2 244 341 129 221 3.53e-21 93.6
Msa0408860 MtrunA17_Chr7g0249311 48.718 78 39 1 243 320 375 451 4.22e-21 96.7
Msa0408860 MtrunA17_Chr7g0249311 46.875 64 32 2 261 324 180 241 4.52e-12 68.6
Msa0408860 MtrunA17_Chr5g0443131 49.383 81 40 1 247 327 144 223 5.14e-21 93.6
Msa0408860 MtrunA17_Chr7g0249301 48.718 78 39 1 243 320 275 351 9.85e-21 94.0
Msa0408860 MtrunA17_Chr7g0249301 44.928 69 36 2 256 324 58 124 1.58e-12 68.9
Msa0408860 MtrunA17_Chr5g0418781 46.914 81 42 1 237 317 101 180 1.96e-20 91.3
Msa0408860 MtrunA17_Chr7g0224801 44.681 94 48 2 249 342 82 171 2.08e-20 88.2
Msa0408860 MtrunA17_Chr4g0068541 48.052 77 39 1 244 320 192 267 2.30e-20 93.2
Msa0408860 MtrunA17_Chr1g0194481 46.341 82 43 1 244 325 142 222 4.76e-20 90.9
Msa0408860 MtrunA17_Chr1g0150801 49.315 73 36 1 245 317 87 158 5.88e-20 86.7
Msa0408860 MtrunA17_Chr7g0263531 46.988 83 43 1 238 320 339 420 7.35e-20 91.7
Msa0408860 MtrunA17_Chr7g0263531 44.000 75 40 2 261 335 190 262 5.42e-13 70.9
Msa0408860 MtrunA17_Chr8g0386241 42.857 84 47 1 243 326 86 168 1.42e-19 86.3
Msa0408860 MtrunA17_Chr3g0129321 50.000 74 36 1 247 320 105 177 4.07e-19 85.5
Msa0408860 MtrunA17_Chr8g0379461 46.739 92 42 2 251 341 66 151 6.27e-19 86.3
Msa0408860 MtrunA17_Chr2g0284321 58.065 62 26 0 260 321 35 96 6.35e-19 85.5
Msa0408860 MtrunA17_Chr2g0289181 41.975 81 47 0 255 335 9 89 1.02e-18 85.1
Msa0408860 MtrunA17_Chr4g0053281 50.000 74 37 0 246 319 252 325 1.04e-18 87.0
Msa0408860 MtrunA17_Chr7g0248721 49.425 87 39 3 244 330 125 206 1.14e-18 84.7
Msa0408860 MtrunA17_Chr1g0184691 52.239 67 32 0 256 322 289 355 1.17e-18 87.4
Msa0408860 MtrunA17_Chr8g0383251 44.156 77 42 1 247 323 95 170 1.17e-18 83.6
Msa0408860 MtrunA17_Chr5g0401821 50.000 74 37 0 246 319 185 258 1.32e-18 85.9
Msa0408860 MtrunA17_Chr8g0335811 46.053 76 40 1 243 318 137 211 1.51e-18 84.7
Msa0408860 MtrunA17_Chr2g0319961 51.429 70 34 0 251 320 71 140 1.91e-18 85.1
Msa0408860 MtrunA17_Chr4g0074001 48.052 77 39 1 244 320 343 418 2.30e-18 87.8
Msa0408860 MtrunA17_Chr7g0270051 42.424 99 47 2 242 334 29 123 2.38e-18 84.7
Msa0408860 MtrunA17_Chr2g0293481 39.091 110 66 1 227 335 233 342 2.67e-18 87.4
Msa0408860 MtrunA17_Chr3g0129361 44.737 76 41 1 243 318 127 201 4.64e-18 83.2
Msa0408860 MtrunA17_Chr1g0147881 43.421 76 43 0 244 319 246 321 6.00e-18 85.1
Msa0408860 MtrunA17_Chr7g0228941 47.887 71 37 0 247 317 39 109 6.87e-18 79.7
Msa0408860 MtrunA17_Chr4g0071521 47.500 80 41 1 240 318 224 303 8.52e-18 84.3
Msa0408860 MtrunA17_Chr1g0188941 48.485 66 33 1 255 320 46 110 2.05e-17 78.2
Msa0408860 MtrunA17_Chr8g0383351 44.156 77 41 2 243 318 142 217 1.55e-16 79.0
Msa0408860 MtrunA17_Chr1g0202461 41.489 94 53 1 257 350 258 349 2.30e-16 80.9
Msa0408860 MtrunA17_Chr8g0348311 45.946 74 40 0 257 330 152 225 2.89e-16 80.1
Msa0408860 MtrunA17_Chr3g0139021 44.595 74 41 0 244 317 298 371 2.99e-16 80.5
Msa0408860 MtrunA17_Chr6g0485431 47.561 82 40 3 241 320 134 214 4.52e-16 79.7
Msa0408860 MtrunA17_Chr7g0248691 39.362 94 50 1 257 350 151 237 1.77e-15 77.4
Msa0408860 MtrunA17_Chr8g0387501 43.056 72 41 0 259 330 128 199 4.76e-15 75.5
Msa0408860 MtrunA17_Chr7g0238921 30.263 152 95 3 261 405 125 272 7.03e-15 75.5
Msa0408860 MtrunA17_Chr1g0189391 42.466 73 40 2 247 318 84 155 1.42e-13 71.6
Msa0408860 MtrunA17_Chr8g0347251 45.205 73 33 2 259 324 135 207 5.69e-12 67.0
Msa0408860 MtrunA17_Chr7g0244981 43.210 81 44 1 261 339 123 203 7.50e-12 65.9
Msa0408860 MtrunA17_Chr5g0432071 40.260 77 44 2 261 337 105 179 1.46e-11 63.9
Msa0408860 MtrunA17_Chr7g0244971 36.364 99 60 2 244 339 106 204 1.87e-11 65.1
Msa0408860 MtrunA17_Chr8g0387981 35.593 118 58 5 222 321 83 200 2.25e-11 65.5
Msa0408860 MtrunA17_Chr5g0447711 34.783 92 57 3 250 340 220 309 6.59e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0408860 AT4G04450.1 39.757 493 208 18 34 450 24 503 7.68e-92 289
Msa0408860 AT4G04450.2 43.641 401 185 10 88 450 12 409 2.76e-90 282
Msa0408860 AT1G62300.1 39.496 476 227 12 35 460 84 548 5.03e-88 280
Msa0408860 AT4G22070.4 42.611 406 179 12 27 382 19 420 3.86e-75 246
Msa0408860 AT4G22070.3 42.611 406 179 12 27 382 19 420 3.86e-75 246
Msa0408860 AT4G22070.2 42.611 406 179 12 27 382 19 420 3.86e-75 246
Msa0408860 AT4G22070.1 42.611 406 179 12 27 382 19 420 3.86e-75 246
Msa0408860 AT4G01720.1 47.431 253 101 5 222 447 196 443 5.42e-54 188
Msa0408860 AT1G68150.1 40.078 257 124 8 101 356 100 327 3.56e-44 159
Msa0408860 AT5G15130.1 36.131 274 135 7 94 334 35 301 2.44e-43 160
Msa0408860 AT5G15130.2 36.466 266 129 7 102 334 1 259 9.11e-43 158
Msa0408860 AT1G18860.1 52.486 181 65 6 240 411 219 387 3.16e-41 154
Msa0408860 AT1G69810.1 33.871 310 185 7 87 382 18 321 9.27e-37 139
Msa0408860 AT1G69810.2 45.882 170 86 3 214 382 99 263 2.78e-34 131
Msa0408860 AT1G80840.1 30.877 285 140 9 177 447 50 291 3.81e-29 116
Msa0408860 AT4G31800.1 30.579 242 125 6 101 338 52 254 3.42e-25 105
Msa0408860 AT1G13960.2 43.220 118 56 2 203 320 209 315 1.49e-24 105
Msa0408860 AT1G13960.2 53.333 60 26 2 261 320 77 134 6.01e-13 70.5
Msa0408860 AT1G13960.1 43.220 118 56 2 203 320 362 468 1.68e-24 106
Msa0408860 AT1G13960.1 53.333 60 26 2 261 320 230 287 3.98e-13 72.0
Msa0408860 AT4G31800.2 41.905 105 61 0 234 338 85 189 4.41e-24 101
Msa0408860 AT2G38470.1 38.636 132 66 4 243 374 345 461 9.29e-24 104
Msa0408860 AT2G38470.1 45.205 73 37 3 248 320 173 242 7.48e-12 67.8
Msa0408860 AT1G29860.1 39.706 136 71 4 244 369 120 254 1.01e-23 101
Msa0408860 AT5G07100.2 45.361 97 47 2 240 331 121 216 3.48e-23 97.8
Msa0408860 AT5G07100.4 45.361 97 47 2 240 331 121 216 3.48e-23 97.8
Msa0408860 AT5G07100.5 45.361 97 47 2 240 331 121 216 3.48e-23 97.8
Msa0408860 AT5G07100.3 45.361 97 47 2 240 331 121 216 3.48e-23 97.8
Msa0408860 AT4G26640.5 51.282 78 37 1 243 320 188 264 3.52e-23 101
Msa0408860 AT4G26640.6 51.282 78 37 1 243 320 188 264 3.52e-23 101
Msa0408860 AT4G26640.4 51.282 78 37 1 243 320 188 264 3.52e-23 101
Msa0408860 AT4G26640.3 51.282 78 37 1 243 320 188 264 3.52e-23 101
Msa0408860 AT5G46350.1 42.969 128 61 4 233 350 147 272 6.15e-23 99.8
Msa0408860 AT5G07100.1 45.361 97 47 2 240 331 214 309 6.46e-23 99.4
Msa0408860 AT4G26640.7 51.282 78 37 1 243 320 324 400 6.78e-23 102
Msa0408860 AT4G26640.1 51.282 78 37 1 243 320 292 368 6.97e-23 101
Msa0408860 AT4G26640.2 51.282 78 37 1 243 320 364 440 8.86e-23 101
Msa0408860 AT2G03340.1 50.602 83 40 1 238 320 393 474 1.96e-22 100
Msa0408860 AT2G03340.1 56.667 60 24 2 261 320 251 308 1.80e-14 76.3
Msa0408860 AT2G25000.2 61.290 62 24 0 259 320 102 163 2.02e-22 95.9
Msa0408860 AT2G25000.4 61.290 62 24 0 259 320 102 163 2.02e-22 95.9
Msa0408860 AT2G25000.3 61.290 62 24 0 259 320 124 185 2.78e-22 96.3
Msa0408860 AT2G46130.1 44.211 95 52 1 233 327 3 96 3.14e-22 92.0
Msa0408860 AT2G25000.1 61.290 62 24 0 259 320 145 206 3.53e-22 96.3
Msa0408860 AT5G26170.1 50.685 73 35 1 246 318 99 170 3.74e-22 93.6
Msa0408860 AT5G41570.1 52.941 85 36 2 244 328 82 162 5.29e-22 93.6
Msa0408860 AT5G56270.1 49.398 83 41 1 238 320 465 546 5.43e-22 99.8
Msa0408860 AT5G56270.1 49.180 61 29 2 261 321 274 332 7.47e-12 68.2
Msa0408860 AT2G47260.1 45.545 101 50 2 244 340 158 257 6.78e-22 97.1
Msa0408860 AT4G18170.1 44.231 104 47 2 227 320 129 231 7.26e-22 96.7
Msa0408860 AT3G01970.1 42.991 107 47 2 226 319 18 123 7.45e-22 92.0
Msa0408860 AT2G04880.2 48.684 76 38 1 246 321 269 343 1.13e-21 97.8
Msa0408860 AT2G04880.2 42.500 80 37 3 248 320 92 169 1.19e-11 67.0
Msa0408860 AT2G04880.1 48.684 76 38 1 246 321 293 367 1.27e-21 97.8
Msa0408860 AT2G04880.1 42.500 80 37 3 248 320 92 169 1.42e-11 67.0
Msa0408860 AT1G64000.1 53.659 82 34 2 247 328 101 178 2.14e-21 92.4
Msa0408860 AT5G49520.1 44.944 89 48 1 244 332 205 292 3.60e-21 95.9
Msa0408860 AT3G01080.1 48.718 78 39 1 243 320 289 365 3.83e-21 95.9
Msa0408860 AT3G01080.1 50.000 60 28 2 261 320 168 225 1.83e-11 66.2
Msa0408860 AT2G30250.1 51.282 78 37 1 243 320 311 387 3.95e-21 95.5
Msa0408860 AT3G01080.2 48.718 78 39 1 243 320 327 403 3.99e-21 96.3
Msa0408860 AT3G01080.2 50.000 60 28 2 261 320 206 263 1.89e-11 66.6
Msa0408860 AT1G69310.4 44.444 81 44 1 237 317 124 203 3.76e-20 90.9
Msa0408860 AT1G69310.2 44.444 81 44 1 237 317 124 203 3.76e-20 90.9
Msa0408860 AT1G69310.1 44.444 81 44 1 237 317 124 203 3.76e-20 90.9
Msa0408860 AT5G13080.1 47.059 85 44 1 247 331 54 137 4.82e-20 87.0
Msa0408860 AT3G62340.1 53.247 77 35 1 244 320 102 177 2.45e-19 88.6
Msa0408860 AT4G30935.1 49.351 77 38 1 244 320 315 390 3.47e-19 90.5
Msa0408860 AT1G55600.1 47.436 78 40 1 244 321 291 367 6.31e-19 89.7
Msa0408860 AT1G29280.1 37.391 115 57 1 226 325 25 139 1.01e-18 86.3
Msa0408860 AT2G23320.1 57.627 59 25 0 261 319 241 299 1.09e-18 87.4
Msa0408860 AT4G26440.1 40.594 101 57 2 244 344 356 453 1.29e-18 89.0
Msa0408860 AT5G28650.1 53.968 63 29 0 256 318 258 320 2.43e-18 86.3
Msa0408860 AT4G24240.1 48.148 81 41 1 240 319 260 340 2.44e-18 86.7
Msa0408860 AT2G37260.2 43.158 95 44 3 235 326 248 335 2.86e-18 86.3
Msa0408860 AT2G37260.2 46.667 75 36 3 261 333 84 156 1.68e-14 75.1
Msa0408860 AT2G30590.1 46.512 86 41 2 245 325 294 379 2.88e-18 87.0
Msa0408860 AT2G37260.3 43.158 95 44 3 235 326 250 337 2.98e-18 86.3
Msa0408860 AT2G37260.3 46.667 75 36 3 261 333 86 158 1.72e-14 75.1
Msa0408860 AT2G44745.1 42.000 100 51 3 222 317 105 201 3.39e-18 83.6
Msa0408860 AT2G37260.1 43.158 95 44 3 235 326 330 417 4.81e-18 86.7
Msa0408860 AT2G37260.1 46.667 75 36 3 261 333 166 238 2.55e-14 75.1
Msa0408860 AT5G64810.1 32.370 173 102 6 153 317 1 166 5.03e-18 82.8
Msa0408860 AT1G30650.1 39.831 118 64 2 210 320 160 277 5.54e-18 86.7
Msa0408860 AT4G23550.1 44.444 81 45 0 255 335 135 215 6.36e-18 84.7
Msa0408860 AT4G39410.1 44.737 76 41 1 243 318 206 280 7.51e-18 84.7
Msa0408860 AT2G24570.1 34.694 147 83 3 194 340 186 319 1.07e-17 84.3
Msa0408860 AT3G04670.1 52.381 63 30 0 256 318 258 320 1.13e-17 84.3
Msa0408860 AT2G34830.1 40.777 103 60 1 226 327 180 282 1.44e-17 85.1
Msa0408860 AT2G34830.2 40.777 103 60 1 226 327 189 291 1.53e-17 85.1
Msa0408860 AT4G01250.1 39.048 105 51 1 260 351 128 232 1.71e-17 83.6
Msa0408860 AT3G58710.2 51.429 70 34 0 251 320 61 130 2.73e-17 82.4
Msa0408860 AT3G58710.1 51.429 70 34 0 251 320 62 131 2.75e-17 82.4
Msa0408860 AT2G46130.2 41.053 95 51 2 233 327 3 92 2.76e-17 77.8
Msa0408860 AT4G31550.2 44.737 76 42 0 242 317 227 302 3.64e-17 82.8
Msa0408860 AT4G31550.1 44.737 76 42 0 242 317 228 303 3.82e-17 82.8
Msa0408860 AT5G52830.1 44.156 77 43 0 254 330 159 235 2.87e-16 80.5
Msa0408860 AT1G69310.3 40.741 81 43 2 237 317 124 199 3.51e-15 76.3
Msa0408860 AT5G45050.1 44.828 87 37 1 260 335 1180 1266 1.95e-14 76.6
Msa0408860 AT5G45050.2 44.828 87 37 1 260 335 1152 1238 2.08e-14 76.6
Msa0408860 AT5G45050.4 44.828 87 37 1 260 335 1041 1127 2.28e-14 76.6
Msa0408860 AT5G45260.1 42.424 99 50 3 239 335 1192 1285 8.65e-14 74.7
Msa0408860 AT4G31800.3 27.861 201 102 6 101 297 52 213 9.41e-14 71.2
Msa0408860 AT5G43290.1 40.244 82 47 2 241 321 94 174 9.74e-14 72.0
Msa0408860 AT2G21900.1 42.424 66 37 1 255 320 104 168 3.59e-13 68.9
Msa0408860 AT2G46400.1 37.143 105 62 2 237 337 81 185 1.49e-12 68.6
Msa0408860 AT3G01080.3 50.000 60 28 2 261 320 206 263 9.64e-12 66.6
Msa0408860 AT2G40740.1 42.500 80 42 2 261 336 174 253 5.44e-11 63.9
Msa0408860 AT2G40740.3 42.500 80 42 2 261 336 183 262 6.45e-11 63.9

Find 75 sgRNAs with CRISPR-Local

Find 151 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTAAGCTTTATTGCAATTC+TGG 0.180524 3_2:-49008157 None:intergenic
TAATGGAAAACGACTAATTA+TGG 0.190758 3_2:+49005235 Msa0408860:CDS
CATAAATTTCTGAGCCAAAA+AGG 0.223319 3_2:-49007955 None:intergenic
GCTGCATAATATGCTCTTCT+AGG 0.248057 3_2:-49006291 None:intergenic
AGCAGCATCAATGCTTCTTT+CGG 0.264126 3_2:+49007749 Msa0408860:CDS
GCAGCATCAATGCTTCTTTC+GGG 0.281642 3_2:+49007750 Msa0408860:CDS
GGATGTCAATGGAGAAAATA+TGG 0.325975 3_2:+49007455 Msa0408860:CDS
GATCCACTTTCTAATATTGT+TGG 0.346118 3_2:-49007804 None:intergenic
GGCAAGATCAGAAGCTAATA+TGG 0.362767 3_2:+49006922 Msa0408860:CDS
AGAAAGCTCGTGTCTCAGTT+AGG 0.368659 3_2:+49006900 Msa0408860:CDS
GCTCCATTTGGTGTAGGGTT+AGG 0.385260 3_2:-49005304 None:intergenic
TTGGTAGTACCATTATTGTT+TGG 0.387147 3_2:-49008119 None:intergenic
TGTAGGGTTAGGTCATTAAC+TGG 0.394243 3_2:-49005293 None:intergenic
GTATATACTTGCTTCCGAAC+TGG 0.394378 3_2:-49007545 None:intergenic
ACTTTCAATGATGGAAGTTA+TGG 0.396495 3_2:-49008087 None:intergenic
AATTCAAATCCAAACAATAA+TGG 0.398112 3_2:+49008110 Msa0408860:CDS
AAACCATCTGCACTTGTCAT+TGG 0.402705 3_2:-49007774 None:intergenic
TGCTGAAGATAGAAGTGTTT+TGG 0.402931 3_2:+49007653 Msa0408860:CDS
ACTAGAGCAGATGTGAATTT+CGG 0.415805 3_2:-49008059 None:intergenic
TTTGTTGCTAGGAGAAATCT+TGG 0.415907 3_2:-49005462 None:intergenic
CCCATGTTCAAGAATGGCCT+TGG 0.418842 3_2:-49006638 None:intergenic
CCTGAAAATGCTTTATTAGC+TGG 0.424836 3_2:-49006803 None:intergenic
AAGAATTCATCCTTGGAACT+TGG 0.426508 3_2:-49006838 None:intergenic
ATTTGAATTACTTTCAATGA+TGG 0.439445 3_2:-49008096 None:intergenic
GCTTATTATCGTTGCACAAT+GGG 0.441190 3_2:+49007512 Msa0408860:CDS
GATTTCTCCTAGCAACAAAC+TGG 0.442717 3_2:+49005466 Msa0408860:CDS
GTTTGAGAGAGCTAATTGAT+AGG 0.446725 3_2:+49006248 Msa0408860:CDS
CTATCATCCAGTTTGTTGCT+AGG 0.450663 3_2:-49005473 None:intergenic
GTCATTTGCAATGATACTAT+AGG 0.455756 3_2:+49005152 Msa0408860:CDS
TGACCTAACCCTACACCAAA+TGG 0.459298 3_2:+49005301 Msa0408860:CDS
TCCAAGGATGAATTCTTTCA+AGG 0.461640 3_2:+49006844 Msa0408860:CDS
TCCAAGGCCATTCTTGAACA+TGG 0.473443 3_2:+49006637 Msa0408860:CDS
CCAAGGATGAATTCTTTCAA+GGG 0.475452 3_2:+49006845 Msa0408860:CDS
TTTATTAAATATAGGTTCAA+AGG 0.476329 3_2:+49007628 Msa0408860:intron
GCAAAACCCATGTTCAAGAA+TGG 0.479173 3_2:-49006644 None:intergenic
TCTAGTGTGATAGTTGGAAA+TGG 0.482456 3_2:-49007870 None:intergenic
CTGGTCTCCACTTGTACCAT+TGG 0.482489 3_2:-49008138 None:intergenic
CCCTTGAAAGAATTCATCCT+TGG 0.483873 3_2:-49006845 None:intergenic
CCAAGGCCATTCTTGAACAT+GGG 0.488187 3_2:+49006638 Msa0408860:CDS
CAACGTGATGATGCTCCATT+TGG 0.491889 3_2:-49005316 None:intergenic
GAAAGCTCGTGTCTCAGTTA+GGG 0.497941 3_2:+49006901 Msa0408860:CDS
GTGCAACGATAATAAGCTCT+TGG 0.499916 3_2:-49007506 None:intergenic
TGGGGACTGCTTGTCCAGTT+CGG 0.502808 3_2:+49007531 Msa0408860:CDS
GAGAAAATATGGACAGAAGA+TGG 0.503010 3_2:+49007466 Msa0408860:CDS
TATGGACAGAAGATGGCAAA+GGG 0.509004 3_2:+49007473 Msa0408860:CDS
CGATAATAAGCTCTTGGACA+TGG 0.509444 3_2:-49007500 None:intergenic
AATCCAACAATATTAGAAAG+TGG 0.511191 3_2:+49007801 Msa0408860:CDS
AACAATAATGGTACTACCAA+TGG 0.512435 3_2:+49008122 Msa0408860:CDS
GTGAGATCTAGTGTGATAGT+TGG 0.515834 3_2:-49007876 None:intergenic
TTATGCAGCTGAAGCAGAAA+CGG 0.537748 3_2:+49006305 Msa0408860:CDS
AGCTTATTATCGTTGCACAA+TGG 0.538266 3_2:+49007511 Msa0408860:CDS
GATGATGCTCCATTTGGTGT+AGG 0.540710 3_2:-49005310 None:intergenic
ATGATGCTCCATTTGGTGTA+GGG 0.544067 3_2:-49005309 None:intergenic
TTGCTGTTGGTGGTAGAGCA+TGG 0.544471 3_2:-49007701 None:intergenic
AGATTTCAGATGGATGTCAA+TGG 0.544482 3_2:+49007444 Msa0408860:intron
AATGTATCACAGATTTCAGA+TGG 0.548456 3_2:+49007434 Msa0408860:intron
AAATTGACTTTGTTGTAGTG+TGG 0.550522 3_2:-49007919 None:intergenic
TATACAAGAGAAAACTGAAA+GGG 0.553286 3_2:+49006757 Msa0408860:CDS
GGCTTTCAAACCAAGTTCCA+AGG 0.554177 3_2:+49006828 Msa0408860:CDS
CTGCATAATATGCTCTTCTA+GGG 0.557538 3_2:-49006290 None:intergenic
ATGGTATGAATATGATTCCA+AGG 0.557677 3_2:+49006621 Msa0408860:CDS
AAAACGACTAATTATGGATG+AGG 0.558731 3_2:+49005241 Msa0408860:CDS
GAAGCAACTGAAGAAAAGAA+TGG 0.574998 3_2:+49006602 Msa0408860:CDS
GGTACTACCAATGGTACAAG+TGG 0.580829 3_2:+49008131 Msa0408860:CDS
TGATGCAAGGAACGAAAATG+AGG 0.583927 3_2:+49005505 Msa0408860:CDS
GGACCAATGACAAGTGCAGA+TGG 0.584230 3_2:+49007771 Msa0408860:CDS
ATAGAGAATATTCTGATGCA+AGG 0.587268 3_2:+49005492 Msa0408860:CDS
GTTGCCATTGTGTGTGAACA+AGG 0.596687 3_2:-49007831 None:intergenic
ACTCCCTTGTTCACACACAA+TGG 0.625581 3_2:+49007827 Msa0408860:CDS
TTATACAAGAGAAAACTGAA+AGG 0.640687 3_2:+49006756 Msa0408860:CDS
ATATGGACAGAAGATGGCAA+AGG 0.645418 3_2:+49007472 Msa0408860:CDS
GCAGAAACGGAGTAAACTTG+AGG 0.652579 3_2:+49006318 Msa0408860:CDS
CTTATTATCGTTGCACAATG+GGG 0.668170 3_2:+49007513 Msa0408860:CDS
ATGGACAGAAGATGGCAAAG+GGG 0.709928 3_2:+49007474 Msa0408860:CDS
TTGCCATTGTGTGTGAACAA+GGG 0.728086 3_2:-49007830 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAATAAAATTGCAAAA+TGG - chr3_2:49005374-49005393 None:intergenic 10.0%
!!! ATGTAATCAAATTTTATAAA+AGG - chr3_2:49007581-49007600 None:intergenic 10.0%
!!! TAGTTTTTTATATTATTTCC+AGG - chr3_2:49005774-49005793 None:intergenic 15.0%
!! CAAATATATTCTTAATGTAA+AGG - chr3_2:49006164-49006183 None:intergenic 15.0%
!! TATGCTTCTTTATTAAATAT+AGG + chr3_2:49007620-49007639 Msa0408860:intron 15.0%
!! TTTATTAAATATAGGTTCAA+AGG + chr3_2:49007628-49007647 Msa0408860:intron 15.0%
!!! TTTTACTAAAAGAGCTAATT+TGG + chr3_2:49005394-49005413 Msa0408860:intron 20.0%
!!! GAATTGAGTTTTACAAATAT+TGG + chr3_2:49005668-49005687 Msa0408860:intron 20.0%
!! CAATGATTATAATTAAGTGT+AGG + chr3_2:49005715-49005734 Msa0408860:intron 20.0%
!! TTCATTCAAATAATCGAAAA+CGG + chr3_2:49006037-49006056 Msa0408860:intron 20.0%
!!! ATTTTTCCTGTAATTAAATC+CGG - chr3_2:49006386-49006405 None:intergenic 20.0%
!!! TAAGATTTTGTTCTTACAAA+TGG + chr3_2:49006505-49006524 Msa0408860:intron 20.0%
!!! ATTCAAAAGTTTTACAACAA+TGG + chr3_2:49006731-49006750 Msa0408860:CDS 20.0%
!! ACACTATTTAAATAGAGATT+CGG - chr3_2:49007178-49007197 None:intergenic 20.0%
!!! TTTTCCATTCCAAAAATATT+CGG - chr3_2:49007987-49008006 None:intergenic 20.0%
!! ATTTGAATTACTTTCAATGA+TGG - chr3_2:49008099-49008118 None:intergenic 20.0%
!! AATTCAAATCCAAACAATAA+TGG + chr3_2:49008110-49008129 Msa0408860:CDS 20.0%
! TAATGGAAAACGACTAATTA+TGG + chr3_2:49005235-49005254 Msa0408860:CDS 25.0%
!! AAAATGAGGTATGTTTTTCT+TGG + chr3_2:49005519-49005538 Msa0408860:intron 25.0%
!! GAGTTTTACAAATATTGGAT+TGG + chr3_2:49005673-49005692 Msa0408860:intron 25.0%
! TCAACTTTATAATAGAGTGA+TGG - chr3_2:49005745-49005764 None:intergenic 25.0%
! TACTTCACAAAAATGTAATG+TGG + chr3_2:49005804-49005823 Msa0408860:intron 25.0%
! ACTTCACAAAAATGTAATGT+GGG + chr3_2:49005805-49005824 Msa0408860:intron 25.0%
! CAAAGTTAAACACAAAACTA+CGG + chr3_2:49005835-49005854 Msa0408860:intron 25.0%
!! TAACATTTTTCTTCGCTATA+AGG - chr3_2:49006090-49006109 None:intergenic 25.0%
! TAGCGAAGAAAAATGTTATT+TGG + chr3_2:49006092-49006111 Msa0408860:intron 25.0%
! TTTAATGACTAACATGGATT+TGG + chr3_2:49006560-49006579 Msa0408860:intron 25.0%
! TTATACAAGAGAAAACTGAA+AGG + chr3_2:49006756-49006775 Msa0408860:CDS 25.0%
! TATACAAGAGAAAACTGAAA+GGG + chr3_2:49006757-49006776 Msa0408860:CDS 25.0%
!!! CTAACAAATTTTAGCATAGA+TGG + chr3_2:49007026-49007045 Msa0408860:intron 25.0%
!! TTCCTCTTAGATTTTCAAAT+TGG + chr3_2:49007146-49007165 Msa0408860:intron 25.0%
!! TATTTAAATAGAGATTCGGT+TGG - chr3_2:49007174-49007193 None:intergenic 25.0%
! GAATCTCTATTTAAATAGTG+TGG + chr3_2:49007177-49007196 Msa0408860:intron 25.0%
! ATTTAAATAGTGTGGACAAA+AGG + chr3_2:49007185-49007204 Msa0408860:intron 25.0%
! GTGTGTGTCTATATATATAT+TGG + chr3_2:49007342-49007361 Msa0408860:intron 25.0%
! AATCCAACAATATTAGAAAG+TGG + chr3_2:49007801-49007820 Msa0408860:CDS 25.0%
! ATAAATTTCTGAGCCAAAAA+GGG - chr3_2:49007957-49007976 None:intergenic 25.0%
GTCATTTGCAATGATACTAT+AGG + chr3_2:49005152-49005171 Msa0408860:CDS 30.0%
! TCTCAAGTCATGTCTTTTAA+TGG + chr3_2:49005218-49005237 Msa0408860:CDS 30.0%
AAAACGACTAATTATGGATG+AGG + chr3_2:49005241-49005260 Msa0408860:CDS 30.0%
ATAGAGAATATTCTGATGCA+AGG + chr3_2:49005492-49005511 Msa0408860:CDS 30.0%
AAAGAAGAATGATCATGTGA+TGG - chr3_2:49005647-49005666 None:intergenic 30.0%
AGTTACCTAATATACGTTCA+TGG - chr3_2:49005964-49005983 None:intergenic 30.0%
!!! AACAATTTTGTTGTTCGACA+AGG + chr3_2:49006117-49006136 Msa0408860:intron 30.0%
!! AAAAAATCAACTAGTTCTGC+CGG + chr3_2:49006364-49006383 Msa0408860:intron 30.0%
CTTGAACATATAACAATGAG+TGG - chr3_2:49006532-49006551 None:intergenic 30.0%
! AGCTAGTTTAATGACTAACA+TGG + chr3_2:49006554-49006573 Msa0408860:intron 30.0%
ATGGTATGAATATGATTCCA+AGG + chr3_2:49006621-49006640 Msa0408860:CDS 30.0%
!!! ATGTTTTTTCTCTCTTGTGA+AGG - chr3_2:49006680-49006699 None:intergenic 30.0%
TTCACAAGAGAGAAAAAACA+TGG + chr3_2:49006679-49006698 Msa0408860:CDS 30.0%
!! AAAAAACATGGTTGACTTGA+TGG + chr3_2:49006691-49006710 Msa0408860:CDS 30.0%
!! CAGCTAATAAAGCATTTTCA+GGG + chr3_2:49006804-49006823 Msa0408860:CDS 30.0%
!! CGCTATTTCAACTTTTCTAT+TGG - chr3_2:49007070-49007089 None:intergenic 30.0%
CACCAATTTGAAAATCTAAG+AGG - chr3_2:49007151-49007170 None:intergenic 30.0%
TTGATAAATGTTGTGTAGAC+TGG - chr3_2:49007281-49007300 None:intergenic 30.0%
! TGGTACATAGACAAGTTTTA+CGG - chr3_2:49007313-49007332 None:intergenic 30.0%
AATGTATCACAGATTTCAGA+TGG + chr3_2:49007434-49007453 Msa0408860:intron 30.0%
!! GTTTTGGTAACAACATATGA+AGG + chr3_2:49007669-49007688 Msa0408860:CDS 30.0%
GATCCACTTTCTAATATTGT+TGG - chr3_2:49007807-49007826 None:intergenic 30.0%
! AAATTGACTTTGTTGTAGTG+TGG - chr3_2:49007922-49007941 None:intergenic 30.0%
CATAAATTTCTGAGCCAAAA+AGG - chr3_2:49007958-49007977 None:intergenic 30.0%
! ACTTTCAATGATGGAAGTTA+TGG - chr3_2:49008090-49008109 None:intergenic 30.0%
! TTGGTAGTACCATTATTGTT+TGG - chr3_2:49008122-49008141 None:intergenic 30.0%
AACAATAATGGTACTACCAA+TGG + chr3_2:49008122-49008141 Msa0408860:CDS 30.0%
GAAGAAGAAGAAGAAGAATG+TGG - chr3_2:49005200-49005219 None:intergenic 35.0%
TTTGTTGCTAGGAGAAATCT+TGG - chr3_2:49005465-49005484 None:intergenic 35.0%
!! ATGATCATGTGATGGATGAT+AGG - chr3_2:49005639-49005658 None:intergenic 35.0%
!! TTATAAAGTTGAGTTGAGCC+TGG + chr3_2:49005753-49005772 Msa0408860:intron 35.0%
CTACACCATGAACGTATATT+AGG + chr3_2:49005956-49005975 Msa0408860:intron 35.0%
TCGCTATAAGGCTTATTCTA+GGG - chr3_2:49006078-49006097 None:intergenic 35.0%
TTCGCTATAAGGCTTATTCT+AGG - chr3_2:49006079-49006098 None:intergenic 35.0%
!! GTTGATTTTCAGCATTCGTT+TGG - chr3_2:49006228-49006247 None:intergenic 35.0%
GTTTGAGAGAGCTAATTGAT+AGG + chr3_2:49006248-49006267 Msa0408860:CDS 35.0%
CTGCATAATATGCTCTTCTA+GGG - chr3_2:49006293-49006312 None:intergenic 35.0%
GAAGCAACTGAAGAAAAGAA+TGG + chr3_2:49006602-49006621 Msa0408860:CDS 35.0%
! CCTGAAAATGCTTTATTAGC+TGG - chr3_2:49006806-49006825 None:intergenic 35.0%
!! CCAGCTAATAAAGCATTTTC+AGG + chr3_2:49006803-49006822 Msa0408860:CDS 35.0%
!! CTAATAAAGCATTTTCAGGG+TGG + chr3_2:49006807-49006826 Msa0408860:CDS 35.0%
AAGAATTCATCCTTGGAACT+TGG - chr3_2:49006841-49006860 None:intergenic 35.0%
TCCAAGGATGAATTCTTTCA+AGG + chr3_2:49006844-49006863 Msa0408860:CDS 35.0%
CCAAGGATGAATTCTTTCAA+GGG + chr3_2:49006845-49006864 Msa0408860:CDS 35.0%
!! TTTTAGCATAGATGGCTTGT+TGG + chr3_2:49007034-49007053 Msa0408860:intron 35.0%
GTTGAAATAGCGACGAAAAA+AGG + chr3_2:49007078-49007097 Msa0408860:intron 35.0%
! TACATAGACAAGTTTTACGG+CGG - chr3_2:49007310-49007329 None:intergenic 35.0%
TAGACACACACAATATACAC+TGG - chr3_2:49007333-49007352 None:intergenic 35.0%
AGATTTCAGATGGATGTCAA+TGG + chr3_2:49007444-49007463 Msa0408860:intron 35.0%
GGATGTCAATGGAGAAAATA+TGG + chr3_2:49007455-49007474 Msa0408860:CDS 35.0%
GAGAAAATATGGACAGAAGA+TGG + chr3_2:49007466-49007485 Msa0408860:CDS 35.0%
AGCTTATTATCGTTGCACAA+TGG + chr3_2:49007511-49007530 Msa0408860:CDS 35.0%
GCTTATTATCGTTGCACAAT+GGG + chr3_2:49007512-49007531 Msa0408860:CDS 35.0%
CTTATTATCGTTGCACAATG+GGG + chr3_2:49007513-49007532 Msa0408860:CDS 35.0%
!!! TGCTGAAGATAGAAGTGTTT+TGG + chr3_2:49007653-49007672 Msa0408860:CDS 35.0%
TCTAGTGTGATAGTTGGAAA+TGG - chr3_2:49007873-49007892 None:intergenic 35.0%
! TAACCTTCTTCAACCCTTTT+TGG + chr3_2:49007941-49007960 Msa0408860:CDS 35.0%
! ATGTCAGCTCCGAATATTTT+TGG + chr3_2:49007975-49007994 Msa0408860:CDS 35.0%
!!! AGCTCCGAATATTTTTGGAA+TGG + chr3_2:49007980-49007999 Msa0408860:CDS 35.0%
ACTAGAGCAGATGTGAATTT+CGG - chr3_2:49008062-49008081 None:intergenic 35.0%
TGTAGGGTTAGGTCATTAAC+TGG - chr3_2:49005296-49005315 None:intergenic 40.0%
!! ATGATGCTCCATTTGGTGTA+GGG - chr3_2:49005312-49005331 None:intergenic 40.0%
GATTTCTCCTAGCAACAAAC+TGG + chr3_2:49005466-49005485 Msa0408860:CDS 40.0%
!! CTATCATCCAGTTTGTTGCT+AGG - chr3_2:49005476-49005495 None:intergenic 40.0%
TGATGCAAGGAACGAAAATG+AGG + chr3_2:49005505-49005524 Msa0408860:CDS 40.0%
! GTAGAAAACCTGGACTTGTT+AGG - chr3_2:49005940-49005959 None:intergenic 40.0%
GCTGCATAATATGCTCTTCT+AGG - chr3_2:49006294-49006313 None:intergenic 40.0%
TTATGCAGCTGAAGCAGAAA+CGG + chr3_2:49006305-49006324 Msa0408860:CDS 40.0%
GTTCTGCCGGATTTAATTAC+AGG + chr3_2:49006377-49006396 Msa0408860:intron 40.0%
GCAAAACCCATGTTCAAGAA+TGG - chr3_2:49006647-49006666 None:intergenic 40.0%
CCCTTGAAAGAATTCATCCT+TGG - chr3_2:49006848-49006867 None:intergenic 40.0%
GGCAAGATCAGAAGCTAATA+TGG + chr3_2:49006922-49006941 Msa0408860:CDS 40.0%
TACTGAGCTTCTACTTCTAG+AGG + chr3_2:49007209-49007228 Msa0408860:intron 40.0%
GAGAATGCAACAAGATTGTG+TGG + chr3_2:49007364-49007383 Msa0408860:intron 40.0%
ATATGGACAGAAGATGGCAA+AGG + chr3_2:49007472-49007491 Msa0408860:CDS 40.0%
TATGGACAGAAGATGGCAAA+GGG + chr3_2:49007473-49007492 Msa0408860:CDS 40.0%
CGATAATAAGCTCTTGGACA+TGG - chr3_2:49007503-49007522 None:intergenic 40.0%
GTGCAACGATAATAAGCTCT+TGG - chr3_2:49007509-49007528 None:intergenic 40.0%
GTATATACTTGCTTCCGAAC+TGG - chr3_2:49007548-49007567 None:intergenic 40.0%
ACCACCAACAGCAAAAACAA+TGG + chr3_2:49007710-49007729 Msa0408860:CDS 40.0%
!!! GATGCCATTGTTTTTGCTGT+TGG - chr3_2:49007717-49007736 None:intergenic 40.0%
AGCAGCATCAATGCTTCTTT+CGG + chr3_2:49007749-49007768 Msa0408860:CDS 40.0%
AAACCATCTGCACTTGTCAT+TGG - chr3_2:49007777-49007796 None:intergenic 40.0%
TTGCCATTGTGTGTGAACAA+GGG - chr3_2:49007833-49007852 None:intergenic 40.0%
GTGAGATCTAGTGTGATAGT+TGG - chr3_2:49007879-49007898 None:intergenic 40.0%
TGACCTAACCCTACACCAAA+TGG + chr3_2:49005301-49005320 Msa0408860:CDS 45.0%
!! GATGATGCTCCATTTGGTGT+AGG - chr3_2:49005313-49005332 None:intergenic 45.0%
! CAACGTGATGATGCTCCATT+TGG - chr3_2:49005319-49005338 None:intergenic 45.0%
CGTTCATGGTGTAGAAAACC+TGG - chr3_2:49005950-49005969 None:intergenic 45.0%
AGCAGCGTACTGTATACACA+AGG - chr3_2:49006188-49006207 None:intergenic 45.0%
GCAGAAACGGAGTAAACTTG+AGG + chr3_2:49006318-49006337 Msa0408860:CDS 45.0%
TCCAAGGCCATTCTTGAACA+TGG + chr3_2:49006637-49006656 Msa0408860:CDS 45.0%
CCAAGGCCATTCTTGAACAT+GGG + chr3_2:49006638-49006657 Msa0408860:CDS 45.0%
GGCTTTCAAACCAAGTTCCA+AGG + chr3_2:49006828-49006847 Msa0408860:CDS 45.0%
AGAAAGCTCGTGTCTCAGTT+AGG + chr3_2:49006900-49006919 Msa0408860:CDS 45.0%
GAAAGCTCGTGTCTCAGTTA+GGG + chr3_2:49006901-49006920 Msa0408860:CDS 45.0%
! GAGCTTCTACTTCTAGAGGA+CGG + chr3_2:49007213-49007232 Msa0408860:intron 45.0%
ATGGACAGAAGATGGCAAAG+GGG + chr3_2:49007474-49007493 Msa0408860:CDS 45.0%
!!! GCCATTGTTTTTGCTGTTGG+TGG - chr3_2:49007714-49007733 None:intergenic 45.0%
GCAGCATCAATGCTTCTTTC+GGG + chr3_2:49007750-49007769 Msa0408860:CDS 45.0%
ACTCCCTTGTTCACACACAA+TGG + chr3_2:49007827-49007846 Msa0408860:CDS 45.0%
GTTGCCATTGTGTGTGAACA+AGG - chr3_2:49007834-49007853 None:intergenic 45.0%
GAGCCAAAAAGGGTTGAAGA+AGG - chr3_2:49007947-49007966 None:intergenic 45.0%
GGTACTACCAATGGTACAAG+TGG + chr3_2:49008131-49008150 Msa0408860:CDS 45.0%
!! AAAAAGTAATTTAATTATAT+TGG + chr3_2:49006455-49006474 Msa0408860:intron 5.0%
!! GCTCCATTTGGTGTAGGGTT+AGG - chr3_2:49005307-49005326 None:intergenic 50.0%
!! ACCTGGACTTGTTAGGTGTC+AGG - chr3_2:49005933-49005952 None:intergenic 50.0%
CCCATGTTCAAGAATGGCCT+TGG - chr3_2:49006641-49006660 None:intergenic 50.0%
GGACGGCGTCATTAATGTGT+TGG + chr3_2:49007230-49007249 Msa0408860:intron 50.0%
!! TTGCTGTTGGTGGTAGAGCA+TGG - chr3_2:49007704-49007723 None:intergenic 50.0%
GGACCAATGACAAGTGCAGA+TGG + chr3_2:49007771-49007790 Msa0408860:CDS 50.0%
CTGGTCTCCACTTGTACCAT+TGG - chr3_2:49008141-49008160 None:intergenic 50.0%
GCCTGACACCTAACAAGTCC+AGG + chr3_2:49005929-49005948 Msa0408860:intron 55.0%
TGGGGACTGCTTGTCCAGTT+CGG + chr3_2:49007531-49007550 Msa0408860:CDS 55.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 49005143 49008178 49005143 ID=Msa0408860;Name=Msa0408860
chr3_2 mRNA 49005143 49008178 49005143 ID=Msa0408860-mRNA-1;Parent=Msa0408860;Name=Msa0408860-mRNA-1;_AED=0.04;_eAED=0.06;_QI=0|0|0|1|1|1|6|0|474
chr3_2 exon 49005143 49005340 49005143 ID=Msa0408860-mRNA-1:exon:9575;Parent=Msa0408860-mRNA-1
chr3_2 exon 49005443 49005526 49005443 ID=Msa0408860-mRNA-1:exon:9576;Parent=Msa0408860-mRNA-1
chr3_2 exon 49006199 49006339 49006199 ID=Msa0408860-mRNA-1:exon:9577;Parent=Msa0408860-mRNA-1
chr3_2 exon 49006593 49006943 49006593 ID=Msa0408860-mRNA-1:exon:9578;Parent=Msa0408860-mRNA-1
chr3_2 exon 49007446 49007559 49007446 ID=Msa0408860-mRNA-1:exon:9579;Parent=Msa0408860-mRNA-1
chr3_2 exon 49007642 49008178 49007642 ID=Msa0408860-mRNA-1:exon:9580;Parent=Msa0408860-mRNA-1
chr3_2 CDS 49005143 49005340 49005143 ID=Msa0408860-mRNA-1:cds;Parent=Msa0408860-mRNA-1
chr3_2 CDS 49005443 49005526 49005443 ID=Msa0408860-mRNA-1:cds;Parent=Msa0408860-mRNA-1
chr3_2 CDS 49006199 49006339 49006199 ID=Msa0408860-mRNA-1:cds;Parent=Msa0408860-mRNA-1
chr3_2 CDS 49006593 49006943 49006593 ID=Msa0408860-mRNA-1:cds;Parent=Msa0408860-mRNA-1
chr3_2 CDS 49007446 49007559 49007446 ID=Msa0408860-mRNA-1:cds;Parent=Msa0408860-mRNA-1
chr3_2 CDS 49007642 49008178 49007642 ID=Msa0408860-mRNA-1:cds;Parent=Msa0408860-mRNA-1
Gene Sequence

>Msa0408860

ATGGAAGAAGTCATTTGCAATGATACTATAGGAAATTCTAGTGTTGTTGAAGTTCCACATTCTTCTTCTTCTTCTTCTCAAGTCATGTCTTTTAATGGAAAACGACTAATTATGGATGAGGTTGATTTCTTTGCAGAGAAGAAAATGAGTCCAGTTAATGACCTAACCCTACACCAAATGGAGCATCATCACGTTGATACTAGTTTAGATCTTCTCACCAAGATTTCTCCTAGCAACAAACTGGATGATAGAGAATATTCTGATGCAAGGAACGAAAATGAGTACGCTGCTGTGTTAGCTAAATTGCACCAAACGAATGCTGAAAATCAACGTTTGAGAGAGCTAATTGATAGGCTTAGAATTGATCACAATGCCCTAGAAGAGCATATTATGCAGCTGAAGCAGAAACGGAGTAAACTTGAGATTAATGATGAAGCAACTGAAGAAAAGAATGGTATGAATATGATTCCAAGGCCATTCTTGAACATGGGTTTTGCTAAAGATGAGCCTTCACAAGAGAGAAAAAACATGGTTGACTTGATGGAGTGTGATAAAAAGAGTATTCAAAAGTTTTACAACAATGGAATTATACAAGAGAAAACTGAAAGGGAAGAAGATCATCATGAGAATTCACCAGCTAATAAAGCATTTTCAGGGTGGCTTTCAAACCAAGTTCCAAGGATGAATTCTTTCAAGGGTGTTGATGATCAAGCATCAGAATCAATGATTAAGAAAGCTCGTGTCTCAGTTAGGGCAAGATCAGAAGCTAATATGATTTCAGATGGATGTCAATGGAGAAAATATGGACAGAAGATGGCAAAGGGGAATCCATGTCCAAGAGCTTATTATCGTTGCACAATGGGGACTGCTTGTCCAGTTCGGAAGCAAGTTCAAAGGTGTGCTGAAGATAGAAGTGTTTTGGTAACAACATATGAAGGACAACATAACCATGCTCTACCACCAACAGCAAAAACAATGGCATCAACAACAACATCAGCAGCATCAATGCTTCTTTCGGGACCAATGACAAGTGCAGATGGTTTAATAAATCCAACAATATTAGAAAGTGGATCACTCCCTTGTTCACACACAATGGCAACACTCTCAGCTTCAGCTCCATTTCCAACTATCACACTAGATCTCACTGAAGAAGCTATCAATAATTCCACACTACAACAAAGTCAATTTAACCTTCTTCAACCCTTTTTGGCTCAGAAATTTATGTCAGCTCCGAATATTTTTGGAATGGAAAATGCTTCATTTGCTGATACAGTTAGTGCTGCAACAGCTGCTATGACTTCTGATCCGAAATTCACATCTGCTCTAGTTGCTGCCATAACTTCCATCATTGAAAGTAATTCAAATCCAAACAATAATGGTACTACCAATGGTACAAGTGGAGACCAGAATTGCAATAAAGCTTAA
Protein sequence

>Msa0408860

MEEVICNDTIGNSSVVEVPHSSSSSSQVMSFNGKRLIMDEVDFFAEKKMSPVNDLTLHQMEHHHVDTSLDLLTKISPSNKLDDREYSDARNENEYAAVLAKLHQTNAENQRLRELIDRLRIDHNALEEHIMQLKQKRSKLEINDEATEEKNGMNMIPRPFLNMGFAKDEPSQERKNMVDLMECDKKSIQKFYNNGIIQEKTEREEDHHENSPANKAFSGWLSNQVPRMNSFKGVDDQASESMIKKARVSVRARSEANMISDGCQWRKYGQKMAKGNPCPRAYYRCTMGTACPVRKQVQRCAEDRSVLVTTYEGQHNHALPPTAKTMASTTTSAASMLLSGPMTSADGLINPTILESGSLPCSHTMATLSASAPFPTITLDLTEEAINNSTLQQSQFNLLQPFLAQKFMSAPNIFGMENASFADTVSAATAAMTSDPKFTSALVAAITSIIESNSNPNNNGTTNGTSGDQNCNKA*