AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0361510

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0361510 MtrunA17_Chr3g0099891 63.377 456 110 6 5 404 1 455 4.26e-171 486
Msa0361510 MtrunA17_Chr3g0099901 96.350 274 10 0 131 404 213 486 8.15e-171 486
Msa0361510 MtrunA17_Chr3g0099901 86.957 115 15 0 1 115 1 115 2.94e-62 208
Msa0361510 MtrunA17_Chr4g0001991 42.593 270 145 5 141 403 251 517 5.92e-64 213
Msa0361510 MtrunA17_Chr2g0291201 39.649 285 156 7 131 404 173 452 1.16e-58 197
Msa0361510 MtrunA17_Chr1g0212321 40.636 283 151 7 135 403 207 486 8.24e-49 172
Msa0361510 MtrunA17_Chr1g0165201 39.236 288 164 6 124 403 185 469 2.67e-46 165
Msa0361510 MtrunA17_Chr7g0275731 39.716 282 152 8 135 404 210 485 2.90e-45 162
Msa0361510 MtrunA17_Chr1g0210201 37.175 269 156 6 142 403 205 467 6.96e-39 145
Msa0361510 MtrunA17_Chr3g0130931 38.235 306 156 14 118 403 156 448 1.31e-36 139
Msa0361510 MtrunA17_Chr6g0484901 36.330 267 160 5 142 403 230 491 1.82e-36 139
Msa0361510 MtrunA17_Chr3g0095891 31.804 327 180 11 115 404 139 459 4.52e-29 117
Msa0361510 MtrunA17_Chr1g0164401 31.683 303 181 12 120 403 133 428 5.19e-26 108
Msa0361510 MtrunA17_Chr8g0353261 32.343 303 173 14 123 403 141 433 7.89e-26 108
Msa0361510 MtrunA17_Chr5g0442921 30.462 325 186 9 115 403 233 553 9.91e-26 108
Msa0361510 MtrunA17_Chr3g0082281 31.879 298 179 11 123 403 29 319 1.47e-25 105
Msa0361510 MtrunA17_Chr2g0309561 30.034 293 176 12 135 404 223 509 2.24e-23 102
Msa0361510 MtrunA17_Chr4g0027681 27.961 304 193 9 120 403 139 436 4.19e-22 98.2
Msa0361510 MtrunA17_Chr8g0390761 27.526 287 188 6 120 391 162 443 4.42e-22 97.8
Msa0361510 MtrunA17_Chr2g0310831 28.333 300 186 10 122 403 152 440 2.98e-21 95.1
Msa0361510 MtrunA17_Chr5g0435871 30.640 297 180 11 124 403 147 434 1.87e-20 92.8
Msa0361510 MtrunA17_Chr2g0310821 31.317 281 169 12 134 403 175 442 3.95e-20 92.0
Msa0361510 MtrunA17_Chr4g0053721 26.384 307 196 12 122 403 129 430 5.43e-20 92.0
Msa0361510 MtrunA17_Chr5g0419291 30.742 283 173 11 135 403 155 428 7.18e-20 90.9
Msa0361510 MtrunA17_Chr5g0435971 30.303 297 181 11 124 403 144 431 9.58e-20 90.5
Msa0361510 MtrunA17_Chr2g0320621 27.703 296 183 9 131 403 150 437 2.89e-19 89.7
Msa0361510 MtrunA17_Chr5g0415951 28.803 309 195 11 116 403 130 434 4.87e-19 88.6
Msa0361510 MtrunA17_Chr1g0189381 26.611 357 209 14 84 403 89 429 6.40e-19 88.6
Msa0361510 MtrunA17_Chr8g0386441 29.242 277 177 9 140 403 159 429 9.07e-19 87.8
Msa0361510 MtrunA17_Chr2g0308001 28.475 295 172 14 135 403 127 408 1.42e-18 87.4
Msa0361510 MtrunA17_Chr1g0179091 31.513 238 145 8 175 403 138 366 1.57e-18 86.3
Msa0361510 MtrunA17_Chr2g0333991 30.389 283 167 13 135 398 159 430 1.72e-18 87.0
Msa0361510 MtrunA17_Chr2g0310801 30.450 289 167 12 134 403 160 433 1.98e-18 86.7
Msa0361510 MtrunA17_Chr2g0311451 30.556 288 170 13 135 403 159 435 3.61e-18 85.9
Msa0361510 MtrunA17_Chr8g0352661 29.861 288 167 11 140 403 160 436 4.40e-18 85.9
Msa0361510 MtrunA17_Chr5g0434411 26.246 301 174 10 133 403 155 437 1.04e-17 84.7
Msa0361510 MtrunA17_Chr7g0265331 26.629 353 217 12 82 403 99 440 1.75e-17 84.3
Msa0361510 MtrunA17_Chr3g0133071 30.303 297 175 13 131 404 151 438 3.77e-17 82.8
Msa0361510 MtrunA17_Chr2g0307461 29.897 291 169 12 141 403 147 430 8.07e-17 82.0
Msa0361510 MtrunA17_Chr8g0352671 29.097 299 184 11 124 403 147 436 8.79e-17 81.6
Msa0361510 MtrunA17_Chr7g0267171 27.431 288 172 12 144 404 189 466 1.25e-16 81.6
Msa0361510 MtrunA17_Chr6g0487471 30.201 298 183 9 124 403 144 434 2.11e-16 80.5
Msa0361510 MtrunA17_Chr2g0307991 27.119 295 171 14 135 403 128 404 2.16e-16 80.5
Msa0361510 MtrunA17_Chr5g0419151 27.203 261 180 5 151 403 109 367 2.48e-16 80.1
Msa0361510 MtrunA17_Chr6g0486981 27.835 291 181 10 132 403 156 436 1.39e-15 78.2
Msa0361510 MtrunA17_Chr1g0179751 26.370 292 187 9 134 403 184 469 1.83e-15 78.2
Msa0361510 MtrunA17_Chr8g0352691 29.304 273 159 11 150 403 2 259 2.79e-15 75.5
Msa0361510 MtrunA17_Chr3g0087851 29.268 287 179 10 134 403 157 436 3.79e-15 77.0
Msa0361510 MtrunA17_Chr2g0312941 28.053 303 179 11 132 398 149 448 1.08e-14 75.5
Msa0361510 MtrunA17_Chr5g0395931 27.208 283 175 12 142 403 163 435 1.15e-14 75.5
Msa0361510 MtrunA17_Chr4g0056211 26.510 298 170 12 148 403 180 470 2.15e-14 74.7
Msa0361510 MtrunA17_Chr2g0287811 26.710 307 176 11 136 400 112 411 2.21e-14 74.3
Msa0361510 MtrunA17_Chr4g0061641 31.317 281 161 12 142 403 129 396 1.10e-13 72.0
Msa0361510 MtrunA17_Chr6g0457401 28.037 321 193 12 110 403 127 436 2.06e-13 71.6
Msa0361510 MtrunA17_Chr5g0399171 25.333 300 172 11 148 403 178 469 2.10e-13 71.6
Msa0361510 MtrunA17_Chr3g0112051 24.157 356 196 17 88 404 90 410 7.77e-13 69.7
Msa0361510 MtrunA17_Chr5g0395871 28.571 280 172 12 142 403 155 424 1.23e-12 68.9
Msa0361510 MtrunA17_Chr2g0287781 26.797 306 176 11 136 400 1035 1333 5.30e-12 67.8
Msa0361510 MtrunA17_Chr2g0287781 27.124 306 175 11 136 400 573 871 7.48e-12 67.4
Msa0361510 MtrunA17_Chr6g0484731 25.436 287 185 11 142 403 268 550 5.48e-12 67.4
Msa0361510 MtrunA17_Chr1g0185661 26.336 262 160 11 171 400 156 416 2.71e-11 65.5
Msa0361510 MtrunA17_Chr7g0249451 25.939 293 180 12 137 403 149 430 4.50e-11 64.3
Msa0361510 MtrunA17_Chr8g0384731 25.000 308 186 14 132 404 128 425 6.97e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0361510 AT5G10770.1 47.981 421 147 7 54 403 54 473 1.38e-121 361
Msa0361510 AT5G10760.1 38.350 412 188 8 54 403 57 464 7.31e-72 233
Msa0361510 AT1G79720.1 40.433 277 149 7 138 404 213 483 2.82e-50 176
Msa0361510 AT1G01300.1 38.667 300 164 7 121 403 188 484 1.62e-48 172
Msa0361510 AT3G61820.1 42.143 280 146 6 137 403 207 483 3.09e-48 171
Msa0361510 AT1G25510.1 38.732 284 155 8 133 403 206 483 2.48e-42 155
Msa0361510 AT3G18490.1 36.301 292 158 8 131 403 218 500 1.23e-38 145
Msa0361510 AT3G20015.1 37.193 285 158 8 135 403 191 470 5.73e-38 143
Msa0361510 AT2G03200.1 34.228 298 159 11 133 403 171 458 3.95e-34 132
Msa0361510 AT3G54400.1 31.293 294 182 12 121 403 140 424 1.71e-32 127
Msa0361510 AT1G09750.1 29.900 301 189 11 118 404 157 449 6.09e-31 123
Msa0361510 AT2G42980.1 31.307 329 181 11 115 403 201 524 1.12e-27 115
Msa0361510 AT3G59080.1 30.887 327 185 10 114 403 210 532 4.56e-26 110
Msa0361510 AT3G12700.1 29.825 285 182 9 135 403 178 460 1.70e-25 108
Msa0361510 AT3G25700.1 29.153 295 175 11 137 403 161 449 2.60e-25 107
Msa0361510 AT3G59080.2 31.379 290 171 8 139 403 210 496 1.13e-24 106
Msa0361510 AT5G07030.1 34.295 312 164 17 120 403 156 454 1.29e-23 102
Msa0361510 AT1G64830.1 29.508 305 181 10 119 403 138 428 2.08e-22 99.0
Msa0361510 AT1G65240.1 27.607 326 199 13 106 403 110 426 3.85e-22 98.6
Msa0361510 AT3G02740.2 27.500 320 187 13 117 403 57 364 1.41e-20 93.2
Msa0361510 AT3G02740.1 27.500 320 187 13 117 403 132 439 1.81e-20 93.6
Msa0361510 AT1G08210.3 26.408 284 185 9 139 403 210 488 4.43e-19 89.7
Msa0361510 AT1G08210.4 26.408 284 185 9 139 403 196 474 5.68e-19 89.4
Msa0361510 AT1G08210.1 26.408 284 185 9 139 403 162 440 7.00e-19 89.0
Msa0361510 AT2G23945.1 29.268 287 174 11 139 403 169 448 7.14e-19 88.6
Msa0361510 AT5G33340.1 30.282 284 175 10 135 403 159 434 7.24e-19 88.6
Msa0361510 AT5G22850.1 26.871 294 188 9 131 403 153 440 1.12e-18 88.2
Msa0361510 AT2G28040.2 28.912 294 184 12 122 403 101 381 2.62e-18 86.3
Msa0361510 AT2G28040.1 28.912 294 184 12 122 403 110 390 4.03e-18 85.9
Msa0361510 AT2G28010.1 26.871 294 191 11 122 403 110 391 6.29e-18 85.5
Msa0361510 AT1G05840.1 26.331 357 209 14 84 403 99 438 5.86e-17 82.8
Msa0361510 AT2G36670.4 26.205 332 201 12 105 403 71 391 6.51e-17 82.8
Msa0361510 AT2G36670.3 26.205 332 201 12 105 403 71 391 6.51e-17 82.8
Msa0361510 AT4G30040.1 28.169 284 168 9 139 398 156 427 8.03e-17 82.4
Msa0361510 AT2G36670.2 26.205 332 201 12 105 403 137 457 1.02e-16 82.4
Msa0361510 AT2G36670.1 26.205 332 201 12 105 403 142 462 1.09e-16 82.4
Msa0361510 AT4G30030.1 30.137 292 168 14 134 404 144 420 1.24e-16 81.6
Msa0361510 AT2G35615.1 26.246 301 190 10 129 403 149 443 2.05e-16 81.3
Msa0361510 AT5G36260.1 24.138 319 199 11 117 403 126 433 3.51e-16 80.5
Msa0361510 AT2G28030.1 26.871 294 191 11 122 403 106 387 4.11e-16 79.7
Msa0361510 AT2G28225.1 27.333 300 186 13 122 403 112 397 5.63e-16 79.7
Msa0361510 AT1G66180.1 27.541 305 168 12 133 403 141 426 4.06e-15 77.0
Msa0361510 AT1G08210.2 26.383 235 153 7 139 357 162 392 4.95e-15 77.0
Msa0361510 AT1G31450.1 25.490 306 198 10 122 403 142 441 9.62e-15 75.9
Msa0361510 AT5G45120.1 26.822 343 189 18 115 403 144 478 2.05e-13 72.0
Msa0361510 AT5G02190.1 27.815 302 171 14 142 404 150 443 2.22e-13 72.0
Msa0361510 AT2G17760.1 27.609 297 183 14 124 403 168 449 8.57e-12 67.0
Msa0361510 AT2G28220.1 25.979 281 181 11 141 403 126 397 8.71e-12 66.6
Msa0361510 AT2G39710.1 24.843 318 193 16 119 401 122 428 2.80e-11 65.5
Msa0361510 AT3G51340.3 26.818 220 139 9 134 341 178 387 6.19e-11 64.3
Msa0361510 AT3G51340.2 26.818 220 139 9 134 341 178 387 6.92e-11 64.3

Find 137 sgRNAs with CRISPR-Local

Find 387 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTAATTTGGAGGGATTTA+TGG 0.093359 3_1:+52108986 Msa0361510:CDS
AAGCTTGTTTCTGTCATTAA+AGG 0.177580 3_1:+52110924 Msa0361510:three_prime_UTR
ATCTAAGAATAATATTAATT+TGG 0.227900 3_1:+52108974 Msa0361510:CDS
ATTCTTAGATGATAATAATT+TGG 0.231434 3_1:-52108961 None:intergenic
GATAGTGATATTACTATCTT+TGG 0.232623 3_1:+52110360 Msa0361510:CDS
TAAATAAGAATTTCTTGTTT+TGG 0.239469 3_1:+52110957 Msa0361510:three_prime_UTR
CTAGGAAGAAATGAGAAATT+TGG 0.285058 3_1:-52105297 None:intergenic
TATATGCTTTGGGCTAAGTT+AGG 0.289042 3_1:+52110638 Msa0361510:three_prime_UTR
TGGGAAACTTTGTGTTATAT+AGG 0.291671 3_1:+52110767 Msa0361510:three_prime_UTR
CAAGACAACGAAGGTCTATT+TGG 0.320960 3_1:+52109787 Msa0361510:CDS
GTATCAAATGCATGTGTATA+TGG 0.322687 3_1:+52109661 Msa0361510:CDS
CCATGTTCCCAACTGAATAA+TGG 0.341614 3_1:+52108867 Msa0361510:CDS
GGGAAACTTTGTGTTATATA+GGG 0.354014 3_1:+52110768 Msa0361510:three_prime_UTR
GGCGGCTCAGCCGGCCTATT+AGG 0.354696 3_1:+52109808 Msa0361510:CDS
GGTTCCACCAACGCTGATTC+CGG 0.355405 3_1:-52110022 None:intergenic
ATTGAAACCGCCGGAGCAAC+TGG 0.356577 3_1:-52110177 None:intergenic
CTTCGTCATGCCTTTCTTGA+AGG 0.357836 3_1:-52110151 None:intergenic
GATGACGACCAAGGCCTAAT+AGG 0.364966 3_1:-52109822 None:intergenic
GGCGTTGGCCACCTTACATT+TGG 0.366609 3_1:+52109919 Msa0361510:CDS
GAGTTTGAAGCAAGCTTGTT+TGG 0.377510 3_1:+52110317 Msa0361510:CDS
ACTTTAAGATGTATAATTGC+TGG 0.380862 3_1:+52110866 Msa0361510:three_prime_UTR
GATGTTGGTGCTGGTAAGAT+TGG 0.381169 3_1:+52110417 Msa0361510:CDS
AGAAGGATTGGTCACCATAT+TGG 0.385640 3_1:-52109687 None:intergenic
ATATGCTTTGGGCTAAGTTA+GGG 0.391247 3_1:+52110639 Msa0361510:three_prime_UTR
TCCCTCCAATGTTCTTTCAA+TGG 0.391849 3_1:-52105365 None:intergenic
CAAATAGACCTTCGTTGTCT+TGG 0.393808 3_1:-52109786 None:intergenic
GGTGCTGGTAAGATTGGGTT+TGG 0.396080 3_1:+52110423 Msa0361510:CDS
GGCAATGTCAAGGCCGTAGA+AGG 0.407381 3_1:-52110001 None:intergenic
TTCTACGGCCTTGACATTGC+CGG 0.414283 3_1:+52110003 Msa0361510:CDS
GAGAAAATAGAGGATGAGAT+TGG 0.420183 3_1:-52110051 None:intergenic
GTTTGTTGGACGAATGAGAT+TGG 0.425702 3_1:-52109844 None:intergenic
GGTCTATTTGGCGGCTCAGC+CGG 0.434342 3_1:+52109799 Msa0361510:CDS
TCCCCGGGAGACCGTGGAAA+AGG 0.440785 3_1:-52109974 None:intergenic
CCATTATTCAGTTGGGAACA+TGG 0.444472 3_1:-52108867 None:intergenic
AGAGGATGAGATTGGAAGCT+TGG 0.445753 3_1:-52110043 None:intergenic
TCAGCCGGCCTATTAGGCCT+TGG 0.449257 3_1:+52109814 Msa0361510:CDS
TAGGGGAAAGAAAACTTGAT+TGG 0.449555 3_1:+52110657 Msa0361510:three_prime_UTR
GCAATAACATTAACAAATGC+CGG 0.451319 3_1:-52110682 None:intergenic
ATAGTGATATTACTATCTTT+GGG 0.452276 3_1:+52110361 Msa0361510:CDS
AACGGTACCAGAGTCAATAA+TGG 0.452998 3_1:-52110085 None:intergenic
ATGTTGGTGCTGGTAAGATT+GGG 0.467919 3_1:+52110418 Msa0361510:CDS
CCTTCCACATCTAGCGGCGT+TGG 0.468987 3_1:+52109904 Msa0361510:CDS
TTCTTGATCATGACAAAGAA+AGG 0.474931 3_1:+52108922 Msa0361510:CDS
GAAGAGCTGCAAGAAGTTGA+TGG 0.475177 3_1:-52105421 None:intergenic
AAGAATAATATTAATTTGGA+GGG 0.476847 3_1:+52108978 Msa0361510:CDS
AAGATTGGGTTTGGATCAAA+TGG 0.477835 3_1:+52110432 Msa0361510:CDS
GTGCCAACGGATGCCATTGA+TGG 0.480188 3_1:+52109745 Msa0361510:CDS
ATATCACTATCATCTCCATT+TGG 0.480356 3_1:-52110348 None:intergenic
AAAAGAGAGCAAGAGAAACT+AGG 0.481899 3_1:-52105315 None:intergenic
ATTTGATACCTTAGCACAGC+GGG 0.482200 3_1:-52109647 None:intergenic
AAGAATAGAAATGCAAAATG+TGG 0.483316 3_1:+52110747 Msa0361510:three_prime_UTR
CTAGAGGTTGTTTATGATGT+TGG 0.484309 3_1:+52110402 Msa0361510:CDS
TGCCTTTCTTGAAGGAATCT+CGG 0.485188 3_1:-52110143 None:intergenic
TAAGAATAATATTAATTTGG+AGG 0.487415 3_1:+52108977 Msa0361510:CDS
TATCGGAGGCGCCAAATGTA+AGG 0.488188 3_1:-52109930 None:intergenic
ACGGTGGAAATAGCCGCGCC+AGG 0.495356 3_1:+52110279 Msa0361510:CDS
AGAATAGAAATGCAAAATGT+GGG 0.495711 3_1:+52110748 Msa0361510:three_prime_UTR
CTTTGCCATTGAAAGAACAT+TGG 0.498496 3_1:+52105360 Msa0361510:CDS
TGGCAAAGCTCTTCTCCAAA+AGG 0.498928 3_1:-52105345 None:intergenic
TGTGTATATGGCATCCAATA+TGG 0.499340 3_1:+52109673 Msa0361510:CDS
CTTTGTGGGCAATGGTGATA+AGG 0.505581 3_1:+52110808 Msa0361510:three_prime_UTR
TTTCCTCGGTGGTGGTGTCA+CGG 0.509350 3_1:+52110260 Msa0361510:CDS
CTCCGAGATTCCTTCAAGAA+AGG 0.510214 3_1:+52110141 Msa0361510:CDS
CCCCGGGAGACCGTGGAAAA+GGG 0.511612 3_1:-52109973 None:intergenic
GTGTAATATATATTGATTGA+AGG 0.512044 3_1:+52110830 Msa0361510:three_prime_UTR
GCACTACAGTTAGCCGTTCG+CGG 0.512484 3_1:-52109726 None:intergenic
CAATAACATTAACAAATGCC+GGG 0.512648 3_1:-52110681 None:intergenic
TGCCATTGAAAGAACATTGG+AGG 0.514882 3_1:+52105363 Msa0361510:CDS
CGCTGATTCCGGCAATGTCA+AGG 0.518348 3_1:-52110011 None:intergenic
ACACATGTTATGATCTTAGC+GGG 0.524797 3_1:+52110205 Msa0361510:CDS
GTTGTTTATGATGTTGGTGC+TGG 0.527246 3_1:+52110408 Msa0361510:CDS
AAAGAAAACTTGATTGGCCC+CGG 0.528492 3_1:+52110663 Msa0361510:three_prime_UTR
GGCCGTAGAAGGAATTTCCC+CGG 0.531353 3_1:-52109990 None:intergenic
CTCGCCACGTAAAGTATCCC+TGG 0.532549 3_1:-52110297 None:intergenic
GACGAAGTATCCAGTTGCTC+CGG 0.533085 3_1:+52110167 Msa0361510:CDS
GACATTGCCGGAATCAGCGT+TGG 0.538029 3_1:+52110015 Msa0361510:CDS
ATTGCCGGAATCAGCGTTGG+TGG 0.539994 3_1:+52110018 Msa0361510:CDS
CGGAGGCAGCCGTGTAATAA+CGG 0.541209 3_1:-52110103 None:intergenic
TGTAATATATATTGATTGAA+GGG 0.541557 3_1:+52110831 Msa0361510:three_prime_UTR
GAGAGCTGATTTGAACAAGA+TGG 0.544703 3_1:-52105393 None:intergenic
AGTATCCGACTGAGAAGGAT+TGG 0.551232 3_1:-52109699 None:intergenic
TCCCGGGGAAATTCCTTCTA+CGG 0.553908 3_1:+52109988 Msa0361510:CDS
TCTTGATCATGACAAAGAAA+GGG 0.562809 3_1:+52108923 Msa0361510:CDS
GAAGATGACTTTGTGGGCAA+TGG 0.563163 3_1:+52110800 Msa0361510:three_prime_UTR
GACAACGAAGGTCTATTTGG+CGG 0.563856 3_1:+52109790 Msa0361510:CDS
GCCATTGAAAGAACATTGGA+GGG 0.564276 3_1:+52105364 Msa0361510:CDS
GGTGGTGCCATTATTGACTC+TGG 0.564716 3_1:+52110078 Msa0361510:CDS
ACGACCAAGGCCTAATAGGC+CGG 0.565407 3_1:-52109818 None:intergenic
GTGGCCAACGCCGCTAGATG+TGG 0.569024 3_1:-52109908 None:intergenic
TTAGCACTAAATAATCATGT+GGG 0.569357 3_1:+52110708 Msa0361510:three_prime_UTR
CGGTGGAAATAGCCGCGCCA+GGG 0.571257 3_1:+52110280 Msa0361510:CDS
GAAGTATCCAGTTGCTCCGG+CGG 0.573953 3_1:+52110170 Msa0361510:CDS
GGAATTTCCCCGGGAGACCG+TGG 0.575875 3_1:-52109980 None:intergenic
TTTAGCACTAAATAATCATG+TGG 0.577841 3_1:+52110707 Msa0361510:three_prime_UTR
TGTGGTTGAAGATGACTTTG+TGG 0.581576 3_1:+52110793 Msa0361510:three_prime_UTR
GTCAATAATGGCACCACCGG+AGG 0.582980 3_1:-52110073 None:intergenic
ACCACCGGAGGAGAAAATAG+AGG 0.591518 3_1:-52110061 None:intergenic
ATCTCGGAGGCTAGCATAGG+CGG 0.591836 3_1:-52110127 None:intergenic
TCGGATACTTCAGCCGCGAA+CGG 0.596592 3_1:+52109713 Msa0361510:CDS
TGCATAAGACTCTTCAAGCA+TGG 0.599321 3_1:+52105270 Msa0361510:exon
GTGTCTAAAATTGAAACCGC+CGG 0.599447 3_1:-52110186 None:intergenic
TCTTGCAGCTCTTCTACCAA+AGG 0.599789 3_1:+52105430 Msa0361510:CDS
AGAGTCAATAATGGCACCAC+CGG 0.600672 3_1:-52110076 None:intergenic
GACACATGTTATGATCTTAG+CGG 0.603071 3_1:+52110204 Msa0361510:CDS
GCCGTAGAAGGAATTTCCCC+GGG 0.603129 3_1:-52109989 None:intergenic
GGAATCTCGGAGGCTAGCAT+AGG 0.604176 3_1:-52110130 None:intergenic
AAACCATCAATGGCATCCGT+TGG 0.607287 3_1:-52109748 None:intergenic
TAGCACTAAATAATCATGTG+GGG 0.607750 3_1:+52110709 Msa0361510:three_prime_UTR
GTGGTTGAAGATGACTTTGT+GGG 0.608507 3_1:+52110794 Msa0361510:three_prime_UTR
TGTCTTCCTTCCACATCTAG+CGG 0.608794 3_1:+52109898 Msa0361510:CDS
TATGCTTTGGGCTAAGTTAG+GGG 0.612467 3_1:+52110640 Msa0361510:three_prime_UTR
GGTGACCAATCCTTCTCAGT+CGG 0.613891 3_1:+52109694 Msa0361510:CDS
AGCTGCAAGAAGTTGATGGT+AGG 0.614693 3_1:-52105417 None:intergenic
GCTGAAGTATCCGACTGAGA+AGG 0.619789 3_1:-52109704 None:intergenic
TTTGTGTTATATAGGGAGTG+TGG 0.629258 3_1:+52110775 Msa0361510:three_prime_UTR
TCAAGAATATCACTGTGTGT+TGG 0.629293 3_1:-52108906 None:intergenic
TTAGATGTGTTACACAAACA+TGG 0.632092 3_1:+52108843 Msa0361510:CDS
AGCACTAAATAATCATGTGG+GGG 0.636994 3_1:+52110710 Msa0361510:three_prime_UTR
CGCGCCAGGGATACTTTACG+TGG 0.637038 3_1:+52110293 Msa0361510:CDS
AGGCTAGCATAGGCGGTCGG+AGG 0.645358 3_1:-52110120 None:intergenic
ACGGCTAACTGTAGTGCCAA+CGG 0.648046 3_1:+52109732 Msa0361510:CDS
CGGAGGCGCCAAATGTAAGG+TGG 0.651394 3_1:-52109927 None:intergenic
CACGTAAAGTATCCCTGGCG+CGG 0.653433 3_1:-52110292 None:intergenic
TTGATACCTTAGCACAGCGG+GGG 0.655284 3_1:-52109645 None:intergenic
TAGATGTGTTACACAAACAT+GGG 0.656261 3_1:+52108844 Msa0361510:CDS
CCAACGCCGCTAGATGTGGA+AGG 0.656708 3_1:-52109904 None:intergenic
CGGAGGCTAGCATAGGCGGT+CGG 0.657114 3_1:-52110123 None:intergenic
ACTCTGGTACCGTTATTACA+CGG 0.660158 3_1:+52110094 Msa0361510:CDS
ATGAGATTGGATGACGACCA+AGG 0.662262 3_1:-52109831 None:intergenic
CCTCGGTGGTGGTGTCACGG+TGG 0.687294 3_1:+52110263 Msa0361510:CDS
GGTTGCGGCCAAGACAACGA+AGG 0.687986 3_1:+52109778 Msa0361510:CDS
TGTGCAACAAAGAACACTAG+AGG 0.689240 3_1:+52110386 Msa0361510:CDS
AATAACATTAACAAATGCCG+GGG 0.689403 3_1:-52110680 None:intergenic
TTTGATACCTTAGCACAGCG+GGG 0.693161 3_1:-52109646 None:intergenic
CTTTCTTGAAGGAATCTCGG+AGG 0.711283 3_1:-52110140 None:intergenic
CATTTGATACCTTAGCACAG+CGG 0.713175 3_1:-52109648 None:intergenic
CCACCGTGACACCACCACCG+AGG 0.762194 3_1:-52110263 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTCTAAGAT+GGG - chr3_1:52106497-52106516 None:intergenic 10.0%
!!! TTTTTTTTTTTTTTCTAAGA+TGG - chr3_1:52106498-52106517 None:intergenic 10.0%
!! AATAAAATAAATGAATTGAT+CGG - chr3_1:52106808-52106827 None:intergenic 10.0%
!!! TTTTTACAAGTAATTTTATA+AGG - chr3_1:52107592-52107611 None:intergenic 10.0%
!!! CTATATTAAATTTTATTATG+TGG + chr3_1:52108212-52108231 Msa0361510:intron 10.0%
!! TAATAATAGAAAACAATTAT+TGG + chr3_1:52108257-52108276 Msa0361510:intron 10.0%
!!! ATGAGATTTTTTTTTTTTTA+TGG - chr3_1:52108435-52108454 None:intergenic 10.0%
!! ATCTAAGAATAATATTAATT+TGG + chr3_1:52108974-52108993 Msa0361510:CDS 10.0%
!!! TGTTACATTATTATTTTTAT+AGG + chr3_1:52109576-52109595 Msa0361510:intron 10.0%
!!! GTTACATTATTATTTTTATA+GGG + chr3_1:52109577-52109596 Msa0361510:intron 10.0%
!!! TGTAATAATAATGATTTTTT+GGG - chr3_1:52109617-52109636 None:intergenic 10.0%
!!! ATTAAGTTGTCATTTAATTT+AGG - chr3_1:52106037-52106056 None:intergenic 15.0%
!! AACATTAACTACAAATAATT+AGG - chr3_1:52106075-52106094 None:intergenic 15.0%
!! TAATTATTTGTAGTTAATGT+TGG + chr3_1:52106074-52106093 Msa0361510:intron 15.0%
!!! TTATAATTTTTCCAATGAAT+TGG - chr3_1:52106279-52106298 None:intergenic 15.0%
!! TCATTGGAAAAATTATAAAA+TGG + chr3_1:52106281-52106300 Msa0361510:intron 15.0%
!! AAATATATCAATTGAGAAAT+GGG - chr3_1:52106734-52106753 None:intergenic 15.0%
!! AAATGATAAGTTTATAATCA+CGG + chr3_1:52106993-52107012 Msa0361510:intron 15.0%
!!! TATAGCATTGTATATTTTTT+TGG + chr3_1:52107128-52107147 Msa0361510:intron 15.0%
!!! ATTGTATTTTGTTGATTTAT+AGG + chr3_1:52107167-52107186 Msa0361510:intron 15.0%
!! ATTTGTTTATTAACTTTAGT+GGG - chr3_1:52107248-52107267 None:intergenic 15.0%
!! TATTTGTTTATTAACTTTAG+TGG - chr3_1:52107249-52107268 None:intergenic 15.0%
!! AAAATAAATAATAGCTAGTT+GGG - chr3_1:52107316-52107335 None:intergenic 15.0%
!! TAAAATAAATAATAGCTAGT+TGG - chr3_1:52107317-52107336 None:intergenic 15.0%
!!! AACTAGCTATTATTTATTTT+AGG + chr3_1:52107316-52107335 Msa0361510:intron 15.0%
!! AAAAGAAACTAAAATATTTG+TGG + chr3_1:52107451-52107470 Msa0361510:intron 15.0%
!!! AAAATTAGTTTTTGTTTGTA+AGG - chr3_1:52107821-52107840 None:intergenic 15.0%
!!! ATTGTTTTCTATTATTAGTT+AGG - chr3_1:52108254-52108273 None:intergenic 15.0%
!!! TTATTTCTAATAATGTTGTA+TGG + chr3_1:52108551-52108570 Msa0361510:intron 15.0%
!! ATTCTTAGATGATAATAATT+TGG - chr3_1:52108964-52108983 None:intergenic 15.0%
!!! TAAGAATAATATTAATTTGG+AGG + chr3_1:52108977-52108996 Msa0361510:CDS 15.0%
!!! AAGAATAATATTAATTTGGA+GGG + chr3_1:52108978-52108997 Msa0361510:CDS 15.0%
!!! CTGTAATAATAATGATTTTT+TGG - chr3_1:52109618-52109637 None:intergenic 15.0%
!! CAAAAAATCATTATTATTAC+AGG + chr3_1:52109616-52109635 Msa0361510:intron 15.0%
!!! ATTTTATCTTATATATGCTT+TGG + chr3_1:52110627-52110646 Msa0361510:three_prime_UTR 15.0%
!!! TTTTATCTTATATATGCTTT+GGG + chr3_1:52110628-52110647 Msa0361510:three_prime_UTR 15.0%
!!! TGTAATATATATTGATTGAA+GGG + chr3_1:52110831-52110850 Msa0361510:three_prime_UTR 15.0%
!!! TAAATAAGAATTTCTTGTTT+TGG + chr3_1:52110957-52110976 Msa0361510:three_prime_UTR 15.0%
!! AGATTAAATATATTGACCTT+TGG - chr3_1:52105449-52105468 None:intergenic 20.0%
!! ATTCTATAGCTCAATTTATT+TGG - chr3_1:52105516-52105535 None:intergenic 20.0%
!! TTGTAACGTTAATAACTTAT+GGG - chr3_1:52105962-52105981 None:intergenic 20.0%
!! ATTGTAACGTTAATAACTTA+TGG - chr3_1:52105961-52105980 None:intergenic 20.0%
!! AAGTTATTAACGTTACAATT+TGG + chr3_1:52105634-52105653 Msa0361510:intron 20.0%
!!! ACGAAACTTTTAATAGTTAA+GGG - chr3_1:52105902-52105921 None:intergenic 20.0%
!!! AACGAAACTTTTAATAGTTA+AGG - chr3_1:52105901-52105920 None:intergenic 20.0%
!!! AACTATTAAAAGTTTCGTTT+TGG + chr3_1:52105694-52105713 Msa0361510:intron 20.0%
!! GAAACCAAAAAATAAGTTAA+GGG - chr3_1:52105842-52105861 None:intergenic 20.0%
!! GAAACCAAAAAATAAGTTAA+GGG - chr3_1:52105842-52105861 None:intergenic 20.0%
!! GAAACCAAAAAATAAGTTAA+GGG - chr3_1:52105842-52105861 None:intergenic 20.0%
!! GAAACCAAAAAATAAGTTAA+GGG + chr3_1:52105842-52105861 Msa0361510:intron 20.0%
!! GAAACCAAAAAATAAGTTAA+GGG + chr3_1:52105842-52105861 Msa0361510:intron 20.0%
!!! AACTATTAAAAGTTTCGTTT+TGG - chr3_1:52105694-52105713 None:intergenic 20.0%
!!! AACGAAACTTTTAATAGTTA+AGG + chr3_1:52105901-52105920 Msa0361510:intron 20.0%
!!! ACGAAACTTTTAATAGTTAA+GGG + chr3_1:52105902-52105921 Msa0361510:intron 20.0%
!! AAGTTATTAACGTTACAATT+TGG - chr3_1:52105634-52105653 None:intergenic 20.0%
!! ATTGTAACGTTAATAACTTA+TGG + chr3_1:52105961-52105980 Msa0361510:intron 20.0%
!! TTGTAACGTTAATAACTTAT+GGG + chr3_1:52105962-52105981 Msa0361510:intron 20.0%
!! TTTAGGCTTAATTAATGATT+TGG - chr3_1:52106020-52106039 None:intergenic 20.0%
!! ATATTAAACAACCAATTCAT+TGG + chr3_1:52106265-52106284 Msa0361510:intron 20.0%
!! TTGGAAAAATTATAAAATGG+AGG + chr3_1:52106284-52106303 Msa0361510:intron 20.0%
!!! CATTTTCTCTTTCTTTTTTA+TGG - chr3_1:52106367-52106386 None:intergenic 20.0%
!! CAAATATATCAATTGAGAAA+TGG - chr3_1:52106735-52106754 None:intergenic 20.0%
!! AATGATAAGTTTATAATCAC+GGG + chr3_1:52106994-52107013 Msa0361510:intron 20.0%
!! GTTAATAAACAAATAACAAG+TGG + chr3_1:52107254-52107273 Msa0361510:intron 20.0%
!! ATGAAGATATTGACAAAATT+TGG + chr3_1:52107354-52107373 Msa0361510:intron 20.0%
!! TAGTCAATGATTTAACTAAA+TGG + chr3_1:52107477-52107496 Msa0361510:intron 20.0%
!! AGTCAATGATTTAACTAAAT+GGG + chr3_1:52107478-52107497 Msa0361510:intron 20.0%
!!! AACTTTATATATTTTTCGTG+TGG + chr3_1:52107643-52107662 Msa0361510:intron 20.0%
!! AATTTCAATATCAACTTGTA+AGG + chr3_1:52107962-52107981 Msa0361510:intron 20.0%
!! TAATAGAAAACAATTATTGG+TGG + chr3_1:52108260-52108279 Msa0361510:intron 20.0%
!! AATAGAAAACAATTATTGGT+GGG + chr3_1:52108261-52108280 Msa0361510:intron 20.0%
!!! TGAGAATACTTGATAATATA+TGG - chr3_1:52108406-52108425 None:intergenic 20.0%
!!! TTATGAGTTACCTTTTTTTT+AGG + chr3_1:52108494-52108513 Msa0361510:intron 20.0%
!!! TATGAGTTACCTTTTTTTTA+GGG + chr3_1:52108495-52108514 Msa0361510:intron 20.0%
!!! ATATTATTATCTTTGAAGCA+CGG + chr3_1:52109313-52109332 Msa0361510:intron 20.0%
!! ATATAATAATCTATGAAGCA+CGG - chr3_1:52109458-52109477 None:intergenic 20.0%
!!! GTATTTTACGTACTTATTAT+CGG - chr3_1:52109950-52109969 None:intergenic 20.0%
!! ATAGTGATATTACTATCTTT+GGG + chr3_1:52110361-52110380 Msa0361510:CDS 20.0%
!!! TTTCATTTTGCTTGATTAAT+TGG - chr3_1:52110521-52110540 None:intergenic 20.0%
!! TCAAAAACTCAAAATACAAT+TGG - chr3_1:52110555-52110574 None:intergenic 20.0%
!!! TTGTATTTTGAGTTTTTGAT+TGG + chr3_1:52110556-52110575 Msa0361510:three_prime_UTR 20.0%
!!! GTGTAATATATATTGATTGA+AGG + chr3_1:52110830-52110849 Msa0361510:three_prime_UTR 20.0%
!! AATAGATACATAATTTGCAG+TGG + chr3_1:52105544-52105563 Msa0361510:intron 25.0%
!! TAAAGGCTTAATTACTCTTT+TGG + chr3_1:52105574-52105593 Msa0361510:intron 25.0%
! GTAACCAACAAATAACTTAA+GGG - chr3_1:52105993-52106012 None:intergenic 25.0%
! TGTAACCAACAAATAACTTA+AGG - chr3_1:52105992-52106011 None:intergenic 25.0%
!!! GTTATTTGTTGGTTACATTT+TGG + chr3_1:52105605-52105624 Msa0361510:intron 25.0%
! GAAACCAAAAAGTAACTTAA+GGG - chr3_1:52105933-52105952 None:intergenic 25.0%
! CGAAACCAAAAAATAAGTTA+AGG - chr3_1:52105841-52105860 None:intergenic 25.0%
!!! CTTATTTTTTGGTTTCGTTT+TGG + chr3_1:52105725-52105744 Msa0361510:intron 25.0%
! GGAAACCAAAAAATAAGTTA+AGG - chr3_1:52105753-52105772 None:intergenic 25.0%
!!! CTTATTTTTTGGTTTCCTTT+TGG + chr3_1:52105756-52105775 Msa0361510:intron 25.0%
! CGAAACCAAAAAATAAGTTA+AGG - chr3_1:52105841-52105860 None:intergenic 25.0%
!!! CTTATTTTTTGGTTTCGTTT+TGG + chr3_1:52105725-52105744 Msa0361510:intron 25.0%
!!! CTTATTTTTTGGTTTCGTTT+TGG - chr3_1:52105725-52105744 None:intergenic 25.0%
! CGAAACCAAAAAATAAGTTA+AGG + chr3_1:52105841-52105860 Msa0361510:intron 25.0%
!!! CTTATTTTTTGGTTTCGTTT+TGG - chr3_1:52105725-52105744 None:intergenic 25.0%
! CGAAACCAAAAAATAAGTTA+AGG + chr3_1:52105841-52105860 Msa0361510:intron 25.0%
! GAAACCAAAAAGTAACTTAA+GGG + chr3_1:52105933-52105952 Msa0361510:intron 25.0%
!!! GTTATTTGTTGGTTACATTT+TGG - chr3_1:52105605-52105624 None:intergenic 25.0%
! TGTAACCAACAAATAACTTA+AGG + chr3_1:52105992-52106011 Msa0361510:intron 25.0%
! GTAACCAACAAATAACTTAA+GGG + chr3_1:52105993-52106012 Msa0361510:intron 25.0%
! TTGTAGTTAATGTTGGTATA+TGG + chr3_1:52106081-52106100 Msa0361510:intron 25.0%
! CACTAATTAATGTGTAAGTT+TGG + chr3_1:52106217-52106236 Msa0361510:intron 25.0%
! TGCTTTCTCAACAAATAAAA+TGG + chr3_1:52106469-52106488 Msa0361510:intron 25.0%
! TATCTTTAATATGTGATGCT+TGG - chr3_1:52106533-52106552 None:intergenic 25.0%
! AAGCATCACATATTAAAGAT+AGG + chr3_1:52106532-52106551 Msa0361510:intron 25.0%
! ATCACATATTAAAGATAGGA+AGG + chr3_1:52106536-52106555 Msa0361510:intron 25.0%
! ATTAAAGATAGGAAGGATAA+AGG + chr3_1:52106543-52106562 Msa0361510:intron 25.0%
!!! TAAATGAATTGATCGGTTTT+TGG - chr3_1:52106801-52106820 None:intergenic 25.0%
!! TTATAATTTGTGGCTAAACT+CGG + chr3_1:52107093-52107112 Msa0361510:intron 25.0%
!!! AGCATTGTATATTTTTTTGG+AGG + chr3_1:52107131-52107150 Msa0361510:intron 25.0%
!!! GCATTGTATATTTTTTTGGA+GGG + chr3_1:52107132-52107151 Msa0361510:intron 25.0%
! AAACAATATTCATTCACGTT+TGG + chr3_1:52107216-52107235 Msa0361510:intron 25.0%
! TTCTTTACGACAATGAAAAT+TGG - chr3_1:52107429-52107448 None:intergenic 25.0%
! GTCAATGATTTAACTAAATG+GGG + chr3_1:52107479-52107498 Msa0361510:intron 25.0%
!! TACTTGTCACCTTAAATTTT+TGG + chr3_1:52107557-52107576 Msa0361510:intron 25.0%
! TTACTCGATCCAAAAATTTA+AGG - chr3_1:52107569-52107588 None:intergenic 25.0%
! AAAAATCTCAAGTGTCAATT+AGG - chr3_1:52107690-52107709 None:intergenic 25.0%
!! ACATATACCATATTCGATTT+TGG + chr3_1:52107779-52107798 Msa0361510:intron 25.0%
!! CATATACCATATTCGATTTT+GGG + chr3_1:52107780-52107799 Msa0361510:intron 25.0%
! CAATACTTGACAATAATAGA+CGG + chr3_1:52107916-52107935 Msa0361510:intron 25.0%
!! ATTAGAACGTTGATTAATAG+AGG + chr3_1:52108031-52108050 Msa0361510:intron 25.0%
! TACTTATATCACAAGTGAAA+GGG - chr3_1:52108296-52108315 None:intergenic 25.0%
! ATACTTATATCACAAGTGAA+AGG - chr3_1:52108297-52108316 None:intergenic 25.0%
! TAATACAAGTCTATTCATCA+AGG - chr3_1:52108733-52108752 None:intergenic 25.0%
! ATGTTTCATTGTTCAAATTC+AGG + chr3_1:52108801-52108820 Msa0361510:intron 25.0%
!!! ATCTAATGATGCTTTTGTTT+TGG - chr3_1:52108829-52108848 None:intergenic 25.0%
!! TATTAATTTGGAGGGATTTA+TGG + chr3_1:52108986-52109005 Msa0361510:CDS 25.0%
!! ATAAGTGACAAATCCTTTTT+AGG - chr3_1:52109131-52109150 None:intergenic 25.0%
! TAATAAGTAGTAGACTTTGA+TGG - chr3_1:52109239-52109258 None:intergenic 25.0%
! TTTCAAATTATTAGCTGTGT+CGG - chr3_1:52109367-52109386 None:intergenic 25.0%
! ACCAAATAAAAAACCATCAA+TGG - chr3_1:52109761-52109780 None:intergenic 25.0%
!!! GACAATACGAAAAAGTTTTT+TGG - chr3_1:52109882-52109901 None:intergenic 25.0%
! GATAGTGATATTACTATCTT+TGG + chr3_1:52110360-52110379 Msa0361510:CDS 25.0%
! TTTAGCACTAAATAATCATG+TGG + chr3_1:52110707-52110726 Msa0361510:three_prime_UTR 25.0%
! TTAGCACTAAATAATCATGT+GGG + chr3_1:52110708-52110727 Msa0361510:three_prime_UTR 25.0%
! AAGAATAGAAATGCAAAATG+TGG + chr3_1:52110747-52110766 Msa0361510:three_prime_UTR 25.0%
! AGAATAGAAATGCAAAATGT+GGG + chr3_1:52110748-52110767 Msa0361510:three_prime_UTR 25.0%
!!! ACTTTAAGATGTATAATTGC+TGG + chr3_1:52110866-52110885 Msa0361510:three_prime_UTR 25.0%
CTAGGAAGAAATGAGAAATT+TGG - chr3_1:52105300-52105319 None:intergenic 30.0%
! TCTCTTTTTCTTTTGCCTTT+TGG + chr3_1:52105330-52105349 Msa0361510:CDS 30.0%
TTTGCAGTGGCATAAATTAA+AGG + chr3_1:52105557-52105576 Msa0361510:intron 30.0%
CGAAACCAAAAAGTAACTTA+AGG - chr3_1:52105932-52105951 None:intergenic 30.0%
!!! GTTACTTTTTGGTTTCGTTT+TGG + chr3_1:52105665-52105684 Msa0361510:intron 30.0%
!!! TGGTCCCTTAACTTATTTTT+TGG + chr3_1:52105714-52105733 Msa0361510:intron 30.0%
!!! TGGTCCCTTAACTTATTTTT+TGG + chr3_1:52105714-52105733 Msa0361510:intron 30.0%
AAATAAGTTAAGGGACCAAA+AGG - chr3_1:52105851-52105870 None:intergenic 30.0%
!!! TGGTCCCTTAACTTATTTTT+TGG + chr3_1:52105714-52105733 Msa0361510:intron 30.0%
!!! TGGTCCCTTAACTTATTTTT+TGG + chr3_1:52105714-52105733 Msa0361510:intron 30.0%
!!! TCCCTTAACTTATTTTTTGG+AGG + chr3_1:52105717-52105736 Msa0361510:intron 30.0%
CCCTCCAAAAAATAAGTTAA+GGG - chr3_1:52105814-52105833 None:intergenic 30.0%
!!! CCCTTAACTTATTTTTTGGA+GGG + chr3_1:52105811-52105830 Msa0361510:intron 30.0%
TCCCTCCAAAAAATAAGTTA+AGG - chr3_1:52105815-52105834 None:intergenic 30.0%
!!! TGGTCCCTTAACTTATTTTT+TGG - chr3_1:52105714-52105733 None:intergenic 30.0%
!!! TGGTCCCTTAACTTATTTTT+TGG - chr3_1:52105714-52105733 None:intergenic 30.0%
!!! GTTACTTTTTGGTTTCGTTT+TGG - chr3_1:52105665-52105684 None:intergenic 30.0%
CGAAACCAAAAAGTAACTTA+AGG + chr3_1:52105932-52105951 Msa0361510:intron 30.0%
TATGGTACATATAAACTCTC+CGG + chr3_1:52106099-52106118 Msa0361510:intron 30.0%
TTAATTAGTGCGTACAAGAT+GGG - chr3_1:52106207-52106226 None:intergenic 30.0%
ATTAATTAGTGCGTACAAGA+TGG - chr3_1:52106208-52106227 None:intergenic 30.0%
AATTCTGCCAATTTCTTTCA+TGG + chr3_1:52106390-52106409 Msa0361510:intron 30.0%
ATTCTGCCAATTTCTTTCAT+GGG + chr3_1:52106391-52106410 Msa0361510:intron 30.0%
!! TTATTTGTTGAGAAAGCACT+AGG - chr3_1:52106467-52106486 None:intergenic 30.0%
TTTAATATGTGATGCTTGGT+GGG - chr3_1:52106529-52106548 None:intergenic 30.0%
TCAAACAAGAAATGTATGAG+TGG - chr3_1:52106584-52106603 None:intergenic 30.0%
! TAGGACCATTTTCTTGAAAA+TGG + chr3_1:52106853-52106872 Msa0361510:intron 30.0%
! ACCATTTTCTTGAAAATGGT+AGG + chr3_1:52106857-52106876 Msa0361510:intron 30.0%
! CCATTTTCTTGAAAATGGTA+GGG + chr3_1:52106858-52106877 Msa0361510:intron 30.0%
!!! GTTTTTTTCTCCTACTAGTA+TGG + chr3_1:52106967-52106986 Msa0361510:intron 30.0%
! ATCATTTTGTCCATACTAGT+AGG - chr3_1:52106980-52106999 None:intergenic 30.0%
CTATGAAAGAATCTCATTCA+CGG + chr3_1:52107056-52107075 Msa0361510:intron 30.0%
TATGAAAGAATCTCATTCAC+GGG + chr3_1:52107057-52107076 Msa0361510:intron 30.0%
GTGATCACGATTATAATTTG+TGG + chr3_1:52107083-52107102 Msa0361510:intron 30.0%
! GTTTATTAACTTTAGTGGGT+TGG - chr3_1:52107244-52107263 None:intergenic 30.0%
CGTCTATTATTGTCAAGTAT+TGG - chr3_1:52107918-52107937 None:intergenic 30.0%
GTGTTCCTAATTGTAATTGA+AGG - chr3_1:52108077-52108096 None:intergenic 30.0%
GACAAAATCTTATCTTGAGT+TGG - chr3_1:52108322-52108341 None:intergenic 30.0%
TATTGGAAACATATCTCTCA+AGG - chr3_1:52108352-52108371 None:intergenic 30.0%
TAGAAGTTGCCCTAAAAAAA+AGG - chr3_1:52108507-52108526 None:intergenic 30.0%
ATGCATCTCATACAGTATAT+AGG + chr3_1:52108669-52108688 Msa0361510:intron 30.0%
TGCATCTCATACAGTATATA+GGG + chr3_1:52108670-52108689 Msa0361510:intron 30.0%
TTAGATGTGTTACACAAACA+TGG + chr3_1:52108843-52108862 Msa0361510:CDS 30.0%
TAGATGTGTTACACAAACAT+GGG + chr3_1:52108844-52108863 Msa0361510:CDS 30.0%
! TGCTTTTCCATTATTCAGTT+GGG - chr3_1:52108877-52108896 None:intergenic 30.0%
!! TTGCTTTTCCATTATTCAGT+TGG - chr3_1:52108878-52108897 None:intergenic 30.0%
TTCTTGATCATGACAAAGAA+AGG + chr3_1:52108922-52108941 Msa0361510:CDS 30.0%
TCTTGATCATGACAAAGAAA+GGG + chr3_1:52108923-52108942 Msa0361510:CDS 30.0%
!!! GGAACTATTTTGTTGTTGTA+GGG + chr3_1:52109096-52109115 Msa0361510:intron 30.0%
!!! TTGTCACTTATTTTTGACAC+TGG + chr3_1:52109140-52109159 Msa0361510:intron 30.0%
GTATCAAATGCATGTGTATA+TGG + chr3_1:52109661-52109680 Msa0361510:CDS 30.0%
!!! GCCATTGATGGTTTTTTATT+TGG + chr3_1:52109757-52109776 Msa0361510:CDS 30.0%
!!! GATGGTTTTTTATTTGGTTG+CGG + chr3_1:52109763-52109782 Msa0361510:CDS 30.0%
!!! GGTATTTTTGAGATGTTTGT+TGG - chr3_1:52109861-52109880 None:intergenic 30.0%
! TTTTACGTACTTATTATCGG+AGG - chr3_1:52109947-52109966 None:intergenic 30.0%
ATATCACTATCATCTCCATT+TGG - chr3_1:52110351-52110370 None:intergenic 30.0%
!! TTTGAGTTTTTGATTGGTCA+AGG + chr3_1:52110562-52110581 Msa0361510:three_prime_UTR 30.0%
AATAACATTAACAAATGCCG+GGG - chr3_1:52110683-52110702 None:intergenic 30.0%
CAATAACATTAACAAATGCC+GGG - chr3_1:52110684-52110703 None:intergenic 30.0%
GCAATAACATTAACAAATGC+CGG - chr3_1:52110685-52110704 None:intergenic 30.0%
TAGCACTAAATAATCATGTG+GGG + chr3_1:52110709-52110728 Msa0361510:three_prime_UTR 30.0%
TGGGAAACTTTGTGTTATAT+AGG + chr3_1:52110767-52110786 Msa0361510:three_prime_UTR 30.0%
GGGAAACTTTGTGTTATATA+GGG + chr3_1:52110768-52110787 Msa0361510:three_prime_UTR 30.0%
!! AAGCTTGTTTCTGTCATTAA+AGG + chr3_1:52110924-52110943 Msa0361510:three_prime_UTR 30.0%
AAAAGAGAGCAAGAGAAACT+AGG - chr3_1:52105318-52105337 None:intergenic 35.0%
CTTTGCCATTGAAAGAACAT+TGG + chr3_1:52105360-52105379 Msa0361510:CDS 35.0%
TGGTCCCTTAAGTTATTTGT+TGG + chr3_1:52105594-52105613 Msa0361510:intron 35.0%
!!! TGGTCCCTTAAGTTACTTTT+TGG + chr3_1:52105654-52105673 Msa0361510:intron 35.0%
!!! TGGTCCCTTAAGTTACTTTT+TGG - chr3_1:52105654-52105673 None:intergenic 35.0%
TGGTCCCTTAAGTTATTTGT+TGG - chr3_1:52105594-52105613 None:intergenic 35.0%
TGTCATGGAGAATATTCACA+TGG + chr3_1:52106425-52106444 Msa0361510:intron 35.0%
CTTTAATATGTGATGCTTGG+TGG - chr3_1:52106530-52106549 None:intergenic 35.0%
! CTAGTAGTCTGAAATTCGAT+CGG - chr3_1:52106836-52106855 None:intergenic 35.0%
!! CCCTACCATTTTCAAGAAAA+TGG - chr3_1:52106861-52106880 None:intergenic 35.0%
GAAAATGGTAGGGTTAAGAA+AGG + chr3_1:52106868-52106887 Msa0361510:intron 35.0%
!!! TTCATTTTAGCTACACGTCA+CGG + chr3_1:52107283-52107302 Msa0361510:intron 35.0%
! CTTTCCATCTCAAGATCTTT+TGG - chr3_1:52107380-52107399 None:intergenic 35.0%
!! CTGGCTTTGTGAATAAATGA+CGG + chr3_1:52107739-52107758 Msa0361510:intron 35.0%
ACTCAACCCAAAATCGAATA+TGG - chr3_1:52107789-52107808 None:intergenic 35.0%
CCTAATTGTAATTGAAGGCA+TGG - chr3_1:52108072-52108091 None:intergenic 35.0%
CCATGCCTTCAATTACAATT+AGG + chr3_1:52108069-52108088 Msa0361510:intron 35.0%
GTACTACTCAAATGCATGTA+TGG - chr3_1:52108105-52108124 None:intergenic 35.0%
! CTGACGTTTTTCTTTCTTGT+TGG - chr3_1:52108138-52108157 None:intergenic 35.0%
ACAAGAAAGAAAAACGTCAG+TGG + chr3_1:52108138-52108157 Msa0361510:intron 35.0%
GAACAATGAAACATGCTTAG+TGG - chr3_1:52108795-52108814 None:intergenic 35.0%
TCAAGAATATCACTGTGTGT+TGG - chr3_1:52108909-52108928 None:intergenic 35.0%
AATAGTTCCCTGATCCAATA+AGG - chr3_1:52109085-52109104 None:intergenic 35.0%
!!! GGGAACTATTTTGTTGTTGT+AGG + chr3_1:52109095-52109114 Msa0361510:intron 35.0%
!!! TATTTTGTTGTTGTAGGGCT+TGG + chr3_1:52109101-52109120 Msa0361510:intron 35.0%
!! TTATCTTTGAAGCACGGATA+TGG + chr3_1:52109319-52109338 Msa0361510:intron 35.0%
TGTGTATATGGCATCCAATA+TGG + chr3_1:52109673-52109692 Msa0361510:CDS 35.0%
! AAAATACACTCCCTTTTCCA+CGG + chr3_1:52109963-52109982 Msa0361510:CDS 35.0%
GAGAAAATAGAGGATGAGAT+TGG - chr3_1:52110054-52110073 None:intergenic 35.0%
GACACATGTTATGATCTTAG+CGG + chr3_1:52110204-52110223 Msa0361510:CDS 35.0%
ACACATGTTATGATCTTAGC+GGG + chr3_1:52110205-52110224 Msa0361510:CDS 35.0%
CTAGAGGTTGTTTATGATGT+TGG + chr3_1:52110402-52110421 Msa0361510:CDS 35.0%
AAGATTGGGTTTGGATCAAA+TGG + chr3_1:52110432-52110451 Msa0361510:CDS 35.0%
! TATATGCTTTGGGCTAAGTT+AGG + chr3_1:52110638-52110657 Msa0361510:three_prime_UTR 35.0%
! ATATGCTTTGGGCTAAGTTA+GGG + chr3_1:52110639-52110658 Msa0361510:three_prime_UTR 35.0%
TAGGGGAAAGAAAACTTGAT+TGG + chr3_1:52110657-52110676 Msa0361510:three_prime_UTR 35.0%
AGCACTAAATAATCATGTGG+GGG + chr3_1:52110710-52110729 Msa0361510:three_prime_UTR 35.0%
TTTGTGTTATATAGGGAGTG+TGG + chr3_1:52110775-52110794 Msa0361510:three_prime_UTR 35.0%
TGCATAAGACTCTTCAAGCA+TGG + chr3_1:52105270-52105289 Msa0361510:exon 40.0%
TGCCATTGAAAGAACATTGG+AGG + chr3_1:52105363-52105382 Msa0361510:CDS 40.0%
GCCATTGAAAGAACATTGGA+GGG + chr3_1:52105364-52105383 Msa0361510:CDS 40.0%
TCCCTCCAATGTTCTTTCAA+TGG - chr3_1:52105368-52105387 None:intergenic 40.0%
!! GAGAGCTGATTTGAACAAGA+TGG - chr3_1:52105396-52105415 None:intergenic 40.0%
TATCACCCTCAAAACAAGAC+CGG - chr3_1:52106121-52106140 None:intergenic 40.0%
TAGTGTGAGTAAGAAACTGC+AGG + chr3_1:52106154-52106173 Msa0361510:intron 40.0%
AGTGTGAGTAAGAAACTGCA+GGG + chr3_1:52106155-52106174 Msa0361510:intron 40.0%
TGCCAATTTCTTTCATGGGT+GGG + chr3_1:52106395-52106414 Msa0361510:intron 40.0%
CGATCGAATTTCAGACTACT+AGG + chr3_1:52106834-52106853 Msa0361510:intron 40.0%
TTGGCCAAAAGATCTTGAGA+TGG + chr3_1:52107373-52107392 Msa0361510:intron 40.0%
AAAGCCAGTAGTGACAAGTA+TGG - chr3_1:52107727-52107746 None:intergenic 40.0%
GCTTTGTGAATAAATGACGG+TGG + chr3_1:52107742-52107761 Msa0361510:intron 40.0%
TCAATGCAAGCACAATCACA+AGG + chr3_1:52107849-52107868 Msa0361510:intron 40.0%
TCCAATACCTCTAGATTCCT+TGG + chr3_1:52108365-52108384 Msa0361510:intron 40.0%
! ACCAAGGAATCTAGAGGTAT+TGG - chr3_1:52108369-52108388 None:intergenic 40.0%
GACTATACCAAGGAATCTAG+AGG - chr3_1:52108375-52108394 None:intergenic 40.0%
GGATGAGAATGACTATACCA+AGG - chr3_1:52108385-52108404 None:intergenic 40.0%
GATGCATCAAGTCTCAATGT+TGG - chr3_1:52108656-52108675 None:intergenic 40.0%
CCATTATTCAGTTGGGAACA+TGG - chr3_1:52108870-52108889 None:intergenic 40.0%
CCATGTTCCCAACTGAATAA+TGG + chr3_1:52108867-52108886 Msa0361510:CDS 40.0%
TCCAATAAGGCTACCAGATT+TGG - chr3_1:52109072-52109091 None:intergenic 40.0%
ACTCAATGTCAACCTTGTGT+TGG + chr3_1:52109179-52109198 Msa0361510:intron 40.0%
TTGTAGCAAGAACCAACACA+AGG - chr3_1:52109194-52109213 None:intergenic 40.0%
GTGATTACAAGTGTCAGTGT+CGG + chr3_1:52109406-52109425 Msa0361510:intron 40.0%
ATTTGATACCTTAGCACAGC+GGG - chr3_1:52109650-52109669 None:intergenic 40.0%
CATTTGATACCTTAGCACAG+CGG - chr3_1:52109651-52109670 None:intergenic 40.0%
!! AGAAGGATTGGTCACCATAT+TGG - chr3_1:52109690-52109709 None:intergenic 40.0%
CAAATAGACCTTCGTTGTCT+TGG - chr3_1:52109789-52109808 None:intergenic 40.0%
CAAGACAACGAAGGTCTATT+TGG + chr3_1:52109787-52109806 Msa0361510:CDS 40.0%
! GTTTGTTGGACGAATGAGAT+TGG - chr3_1:52109847-52109866 None:intergenic 40.0%
! TCATCCTCTATTTTCTCCTC+CGG + chr3_1:52110057-52110076 Msa0361510:CDS 40.0%
AACGGTACCAGAGTCAATAA+TGG - chr3_1:52110088-52110107 None:intergenic 40.0%
ACTCTGGTACCGTTATTACA+CGG + chr3_1:52110094-52110113 Msa0361510:CDS 40.0%
TGCCTTTCTTGAAGGAATCT+CGG - chr3_1:52110146-52110165 None:intergenic 40.0%
! GTGTCTAAAATTGAAACCGC+CGG - chr3_1:52110189-52110208 None:intergenic 40.0%
! GAGTTTGAAGCAAGCTTGTT+TGG + chr3_1:52110317-52110336 Msa0361510:CDS 40.0%
TGTGCAACAAAGAACACTAG+AGG + chr3_1:52110386-52110405 Msa0361510:CDS 40.0%
GTTGTTTATGATGTTGGTGC+TGG + chr3_1:52110408-52110427 Msa0361510:CDS 40.0%
!! ATGTTGGTGCTGGTAAGATT+GGG + chr3_1:52110418-52110437 Msa0361510:CDS 40.0%
! TATGCTTTGGGCTAAGTTAG+GGG + chr3_1:52110640-52110659 Msa0361510:three_prime_UTR 40.0%
! AAAGAAAACTTGATTGGCCC+CGG + chr3_1:52110663-52110682 Msa0361510:three_prime_UTR 40.0%
TGTGGTTGAAGATGACTTTG+TGG + chr3_1:52110793-52110812 Msa0361510:three_prime_UTR 40.0%
GTGGTTGAAGATGACTTTGT+GGG + chr3_1:52110794-52110813 Msa0361510:three_prime_UTR 40.0%
TGGCAAAGCTCTTCTCCAAA+AGG - chr3_1:52105348-52105367 None:intergenic 45.0%
!! AGCTGCAAGAAGTTGATGGT+AGG - chr3_1:52105420-52105439 None:intergenic 45.0%
GAAGAGCTGCAAGAAGTTGA+TGG - chr3_1:52105424-52105443 None:intergenic 45.0%
TCTTGCAGCTCTTCTACCAA+AGG + chr3_1:52105430-52105449 Msa0361510:CDS 45.0%
!!! AACTCTCCGGTCTTGTTTTG+AGG + chr3_1:52106112-52106131 Msa0361510:intron 45.0%
!!! ACTCTCCGGTCTTGTTTTGA+GGG + chr3_1:52106113-52106132 Msa0361510:intron 45.0%
CTGCCAATTTCTTTCATGGG+TGG + chr3_1:52106394-52106413 Msa0361510:intron 45.0%
TGCCCACCCATGAAAGAAAT+TGG - chr3_1:52106400-52106419 None:intergenic 45.0%
! TGGGTGGGCATAATTTGTCA+TGG + chr3_1:52106410-52106429 Msa0361510:intron 45.0%
!! AGAAAGCACTAGGCACAAGA+TGG - chr3_1:52106457-52106476 None:intergenic 45.0%
AGAAATGTATGAGTGGCAGC+TGG - chr3_1:52106577-52106596 None:intergenic 45.0%
TCCACCATACTTGTCACTAC+TGG + chr3_1:52107720-52107739 Msa0361510:intron 45.0%
AAAAACGTCAGTGGTCGACA+TGG + chr3_1:52108147-52108166 Msa0361510:intron 45.0%
AAAACGTCAGTGGTCGACAT+GGG + chr3_1:52108148-52108167 Msa0361510:intron 45.0%
ATAAGGCTACCAGATTTGGC+TGG - chr3_1:52109068-52109087 None:intergenic 45.0%
!! GCCAAATCTGGTAGCCTTAT+TGG + chr3_1:52109068-52109087 Msa0361510:intron 45.0%
!! TCTGGTAGCCTTATTGGATC+AGG + chr3_1:52109074-52109093 Msa0361510:intron 45.0%
!! CTGGTAGCCTTATTGGATCA+GGG + chr3_1:52109075-52109094 Msa0361510:intron 45.0%
! AGGGCTTGGTACTCCTAAAA+AGG + chr3_1:52109115-52109134 Msa0361510:intron 45.0%
! ACACTGGTAGTGATCTCACT+TGG + chr3_1:52109156-52109175 Msa0361510:intron 45.0%
TTTGATACCTTAGCACAGCG+GGG - chr3_1:52109649-52109668 None:intergenic 45.0%
AGTATCCGACTGAGAAGGAT+TGG - chr3_1:52109702-52109721 None:intergenic 45.0%
AAACCATCAATGGCATCCGT+TGG - chr3_1:52109751-52109770 None:intergenic 45.0%
GACAACGAAGGTCTATTTGG+CGG + chr3_1:52109790-52109809 Msa0361510:CDS 45.0%
ATGAGATTGGATGACGACCA+AGG - chr3_1:52109834-52109853 None:intergenic 45.0%
TGTCTTCCTTCCACATCTAG+CGG + chr3_1:52109898-52109917 Msa0361510:CDS 45.0%
AGAGGATGAGATTGGAAGCT+TGG - chr3_1:52110046-52110065 None:intergenic 45.0%
AGAGTCAATAATGGCACCAC+CGG - chr3_1:52110079-52110098 None:intergenic 45.0%
CTTTCTTGAAGGAATCTCGG+AGG - chr3_1:52110143-52110162 None:intergenic 45.0%
CTCCGAGATTCCTTCAAGAA+AGG + chr3_1:52110141-52110160 Msa0361510:CDS 45.0%
CTTCGTCATGCCTTTCTTGA+AGG - chr3_1:52110154-52110173 None:intergenic 45.0%
! TGTTTGGCGTTTTCGCCAAA+TGG + chr3_1:52110333-52110352 Msa0361510:CDS 45.0%
!! GATGTTGGTGCTGGTAAGAT+TGG + chr3_1:52110417-52110436 Msa0361510:CDS 45.0%
GAAGATGACTTTGTGGGCAA+TGG + chr3_1:52110800-52110819 Msa0361510:three_prime_UTR 45.0%
CTTTGTGGGCAATGGTGATA+AGG + chr3_1:52110808-52110827 Msa0361510:three_prime_UTR 45.0%
AGCACTAGGCACAAGATGGT+GGG - chr3_1:52106453-52106472 None:intergenic 50.0%
AAGCACTAGGCACAAGATGG+TGG - chr3_1:52106454-52106473 None:intergenic 50.0%
GCCAGTAGTGACAAGTATGG+TGG - chr3_1:52107724-52107743 None:intergenic 50.0%
GTGAATAAATGACGGTGGCG+CGG + chr3_1:52107747-52107766 Msa0361510:intron 50.0%
AAACGTCAGTGGTCGACATG+GGG + chr3_1:52108149-52108168 Msa0361510:intron 50.0%
GCTAACCTACCAGCCAAATC+TGG + chr3_1:52109056-52109075 Msa0361510:intron 50.0%
ACTCAGCTCTCATCAGCTAC+AGG + chr3_1:52109287-52109306 Msa0361510:intron 50.0%
TTGATACCTTAGCACAGCGG+GGG - chr3_1:52109648-52109667 None:intergenic 50.0%
GGTGACCAATCCTTCTCAGT+CGG + chr3_1:52109694-52109713 Msa0361510:CDS 50.0%
! GCTGAAGTATCCGACTGAGA+AGG - chr3_1:52109707-52109726 None:intergenic 50.0%
ACGGCTAACTGTAGTGCCAA+CGG + chr3_1:52109732-52109751 Msa0361510:CDS 50.0%
GATGACGACCAAGGCCTAAT+AGG - chr3_1:52109825-52109844 None:intergenic 50.0%
!! TATCGGAGGCGCCAAATGTA+AGG - chr3_1:52109933-52109952 None:intergenic 50.0%
TCCCGGGGAAATTCCTTCTA+CGG + chr3_1:52109988-52110007 Msa0361510:CDS 50.0%
TTCTACGGCCTTGACATTGC+CGG + chr3_1:52110003-52110022 Msa0361510:CDS 50.0%
! TCCTCTATTTTCTCCTCCGG+TGG + chr3_1:52110060-52110079 Msa0361510:CDS 50.0%
ACCACCGGAGGAGAAAATAG+AGG - chr3_1:52110064-52110083 None:intergenic 50.0%
!! GGTGGTGCCATTATTGACTC+TGG + chr3_1:52110078-52110097 Msa0361510:CDS 50.0%
! GACGAAGTATCCAGTTGCTC+CGG + chr3_1:52110167-52110186 Msa0361510:CDS 50.0%
!! GGTGCTGGTAAGATTGGGTT+TGG + chr3_1:52110423-52110442 Msa0361510:CDS 50.0%
ATAAATGACGGTGGCGCGGA+CGG + chr3_1:52107751-52107770 Msa0361510:intron 55.0%
GGCTACCAGATTTGGCTGGT+AGG - chr3_1:52109064-52109083 None:intergenic 55.0%
GCACGGATATGGACACGACA+CGG + chr3_1:52109330-52109349 Msa0361510:intron 55.0%
TCGGATACTTCAGCCGCGAA+CGG + chr3_1:52109713-52109732 Msa0361510:CDS 55.0%
GCACTACAGTTAGCCGTTCG+CGG - chr3_1:52109729-52109748 None:intergenic 55.0%
GTGCCAACGGATGCCATTGA+TGG + chr3_1:52109745-52109764 Msa0361510:CDS 55.0%
ACGACCAAGGCCTAATAGGC+CGG - chr3_1:52109821-52109840 None:intergenic 55.0%
!! GGCGTTGGCCACCTTACATT+TGG + chr3_1:52109919-52109938 Msa0361510:CDS 55.0%
GCCGTAGAAGGAATTTCCCC+GGG - chr3_1:52109992-52110011 None:intergenic 55.0%
GGCCGTAGAAGGAATTTCCC+CGG - chr3_1:52109993-52110012 None:intergenic 55.0%
GGCAATGTCAAGGCCGTAGA+AGG - chr3_1:52110004-52110023 None:intergenic 55.0%
!! CGCTGATTCCGGCAATGTCA+AGG - chr3_1:52110014-52110033 None:intergenic 55.0%
GACATTGCCGGAATCAGCGT+TGG + chr3_1:52110015-52110034 Msa0361510:CDS 55.0%
! ATTGCCGGAATCAGCGTTGG+TGG + chr3_1:52110018-52110037 Msa0361510:CDS 55.0%
!! GGTTCCACCAACGCTGATTC+CGG - chr3_1:52110025-52110044 None:intergenic 55.0%
GTCAATAATGGCACCACCGG+AGG - chr3_1:52110076-52110095 None:intergenic 55.0%
CGGAGGCAGCCGTGTAATAA+CGG - chr3_1:52110106-52110125 None:intergenic 55.0%
ATCTCGGAGGCTAGCATAGG+CGG - chr3_1:52110130-52110149 None:intergenic 55.0%
GGAATCTCGGAGGCTAGCAT+AGG - chr3_1:52110133-52110152 None:intergenic 55.0%
! GAAGTATCCAGTTGCTCCGG+CGG + chr3_1:52110170-52110189 Msa0361510:CDS 55.0%
ATTGAAACCGCCGGAGCAAC+TGG - chr3_1:52110180-52110199 None:intergenic 55.0%
! TTTCCTCGGTGGTGGTGTCA+CGG + chr3_1:52110260-52110279 Msa0361510:CDS 55.0%
! CACGTAAAGTATCCCTGGCG+CGG - chr3_1:52110295-52110314 None:intergenic 55.0%
! CTCGCCACGTAAAGTATCCC+TGG - chr3_1:52110300-52110319 None:intergenic 55.0%
AAGTGACCCCCGCTGTGCTA+AGG + chr3_1:52109639-52109658 Msa0361510:CDS 60.0%
GGTTGCGGCCAAGACAACGA+AGG + chr3_1:52109778-52109797 Msa0361510:CDS 60.0%
GGTCTATTTGGCGGCTCAGC+CGG + chr3_1:52109799-52109818 Msa0361510:CDS 60.0%
TCAGCCGGCCTATTAGGCCT+TGG + chr3_1:52109814-52109833 Msa0361510:CDS 60.0%
CCAACGCCGCTAGATGTGGA+AGG - chr3_1:52109907-52109926 None:intergenic 60.0%
CCTTCCACATCTAGCGGCGT+TGG + chr3_1:52109904-52109923 Msa0361510:CDS 60.0%
!! CGGAGGCGCCAAATGTAAGG+TGG - chr3_1:52109930-52109949 None:intergenic 60.0%
! CTCCCTTTTCCACGGTCTCC+CGG + chr3_1:52109971-52109990 Msa0361510:CDS 60.0%
! TCCCTTTTCCACGGTCTCCC+GGG + chr3_1:52109972-52109991 Msa0361510:CDS 60.0%
CGCGCCAGGGATACTTTACG+TGG + chr3_1:52110293-52110312 Msa0361510:CDS 60.0%
GTGGCCAACGCCGCTAGATG+TGG - chr3_1:52109911-52109930 None:intergenic 65.0%
CCCCGGGAGACCGTGGAAAA+GGG - chr3_1:52109976-52109995 None:intergenic 65.0%
! CCCTTTTCCACGGTCTCCCG+GGG + chr3_1:52109973-52109992 Msa0361510:CDS 65.0%
TCCCCGGGAGACCGTGGAAA+AGG - chr3_1:52109977-52109996 None:intergenic 65.0%
GGAATTTCCCCGGGAGACCG+TGG - chr3_1:52109983-52110002 None:intergenic 65.0%
AGGCTAGCATAGGCGGTCGG+AGG - chr3_1:52110123-52110142 None:intergenic 65.0%
CGGAGGCTAGCATAGGCGGT+CGG - chr3_1:52110126-52110145 None:intergenic 65.0%
ACGGTGGAAATAGCCGCGCC+AGG + chr3_1:52110279-52110298 Msa0361510:CDS 65.0%
CGGTGGAAATAGCCGCGCCA+GGG + chr3_1:52110280-52110299 Msa0361510:CDS 65.0%
GGCGGCTCAGCCGGCCTATT+AGG + chr3_1:52109808-52109827 Msa0361510:CDS 70.0%
CCACCGTGACACCACCACCG+AGG - chr3_1:52110266-52110285 None:intergenic 70.0%
!! CCTCGGTGGTGGTGTCACGG+TGG + chr3_1:52110263-52110282 Msa0361510:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 52105260 52110983 52105260 ID=Msa0361510;Name=Msa0361510
chr3_1 mRNA 52105260 52110983 52105260 ID=Msa0361510-mRNA-1;Parent=Msa0361510;Name=Msa0361510-mRNA-1;_AED=0.10;_eAED=0.10;_QI=29|0.5|0.66|1|0|0.66|3|519|404
chr3_1 exon 52105260 52105451 52105260 ID=Msa0361510-mRNA-1:exon:9329;Parent=Msa0361510-mRNA-1
chr3_1 exon 52108823 52109047 52108823 ID=Msa0361510-mRNA-1:exon:9330;Parent=Msa0361510-mRNA-1
chr3_1 exon 52109638 52110983 52109638 ID=Msa0361510-mRNA-1:exon:9331;Parent=Msa0361510-mRNA-1
chr3_1 five_prime_UTR 52105260 52105288 52105260 ID=Msa0361510-mRNA-1:five_prime_utr;Parent=Msa0361510-mRNA-1
chr3_1 CDS 52105289 52105451 52105289 ID=Msa0361510-mRNA-1:cds;Parent=Msa0361510-mRNA-1
chr3_1 CDS 52108823 52109047 52108823 ID=Msa0361510-mRNA-1:cds;Parent=Msa0361510-mRNA-1
chr3_1 CDS 52109638 52110464 52109638 ID=Msa0361510-mRNA-1:cds;Parent=Msa0361510-mRNA-1
chr3_1 three_prime_UTR 52110465 52110983 52110465 ID=Msa0361510-mRNA-1:three_prime_utr;Parent=Msa0361510-mRNA-1
Gene Sequence

>Msa0361510

ATGGCTTTCCAAATTTCTCATTTCTTCCTAGTTTCTCTTGCTCTCTTTTTCTTTTGCCTTTTGGAGAAGAGCTTTGCCATTGAAAGAACATTGGAGGGAAGACACCATCTTGTTCAAATCAGCTCTCTCCTACCATCAACTTCTTGCAGCTCTTCTACCAAAGGTTCCAAAACAAAAGCATCATTAGATGTGTTACACAAACATGGGCCATGTTCCCAACTGAATAATGGAAAAGCAAAAATTCTTCCAACACACAGTGATATTCTTGATCATGACAAAGAAAGGGTGAATTATATTCACTCCAAATTATTATCATCTAAGAATAATATTAATTTGGAGGGATTTATGGATTCTAAATCTAAATCTAAATCTAAATCAATTAAATCACGAAGTGACCCCCGCTGTGCTAAGGTATCAAATGCATGTGTATATGGCATCCAATATGGTGACCAATCCTTCTCAGTCGGATACTTCAGCCGCGAACGGCTAACTGTAGTGCCAACGGATGCCATTGATGGTTTTTTATTTGGTTGCGGCCAAGACAACGAAGGTCTATTTGGCGGCTCAGCCGGCCTATTAGGCCTTGGTCGTCATCCAATCTCATTCGTCCAACAAACATCTCAAAAATACCAAAAAACTTTTTCGTATTGTCTTCCTTCCACATCTAGCGGCGTTGGCCACCTTACATTTGGCGCCTCCGATAATAAGTACGTAAAATACACTCCCTTTTCCACGGTCTCCCGGGGAAATTCCTTCTACGGCCTTGACATTGCCGGAATCAGCGTTGGTGGAACCAAGCTTCCAATCTCATCCTCTATTTTCTCCTCCGGTGGTGCCATTATTGACTCTGGTACCGTTATTACACGGCTGCCTCCGACCGCCTATGCTAGCCTCCGAGATTCCTTCAAGAAAGGCATGACGAAGTATCCAGTTGCTCCGGCGGTTTCAATTTTAGACACATGTTATGATCTTAGCGGGTACAAGATTGTTTCCATTCCGAAGATTAGTTTTTTCCTCGGTGGTGGTGTCACGGTGGAAATAGCCGCGCCAGGGATACTTTACGTGGCGAGTTTGAAGCAAGCTTGTTTGGCGTTTTCGCCAAATGGAGATGATAGTGATATTACTATCTTTGGGAATGTGCAACAAAGAACACTAGAGGTTGTTTATGATGTTGGTGCTGGTAAGATTGGGTTTGGATCAAATGGTTGCGAGTGA
Protein sequence

>Msa0361510

MAFQISHFFLVSLALFFFCLLEKSFAIERTLEGRHHLVQISSLLPSTSCSSSTKGSKTKASLDVLHKHGPCSQLNNGKAKILPTHSDILDHDKERVNYIHSKLLSSKNNINLEGFMDSKSKSKSKSIKSRSDPRCAKVSNACVYGIQYGDQSFSVGYFSRERLTVVPTDAIDGFLFGCGQDNEGLFGGSAGLLGLGRHPISFVQQTSQKYQKTFSYCLPSTSSGVGHLTFGASDNKYVKYTPFSTVSRGNSFYGLDIAGISVGGTKLPISSSIFSSGGAIIDSGTVITRLPPTAYASLRDSFKKGMTKYPVAPAVSILDTCYDLSGYKIVSIPKISFFLGGGVTVEIAAPGILYVASLKQACLAFSPNGDDSDITIFGNVQQRTLEVVYDVGAGKIGFGSNGCE*