AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0501940

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0501940 MtrunA17_Chr3g0099901 93.607 438 25 1 5 442 52 486 0.0 756
Msa0501940 MtrunA17_Chr3g0099891 70.522 441 88 4 8 442 51 455 0.0 590
Msa0501940 MtrunA17_Chr2g0291201 40.920 413 218 10 41 442 55 452 1.49e-93 289
Msa0501940 MtrunA17_Chr4g0001991 42.857 364 194 8 86 441 160 517 4.47e-87 275
Msa0501940 MtrunA17_Chr7g0275731 38.369 417 231 11 38 442 83 485 3.30e-76 246
Msa0501940 MtrunA17_Chr1g0212321 35.526 456 259 11 9 441 43 486 9.47e-75 242
Msa0501940 MtrunA17_Chr1g0165201 40.833 360 195 9 90 441 120 469 2.27e-71 233
Msa0501940 MtrunA17_Chr1g0210201 36.118 407 220 10 42 441 94 467 8.78e-67 220
Msa0501940 MtrunA17_Chr6g0484901 35.802 405 238 8 42 441 104 491 1.13e-60 205
Msa0501940 MtrunA17_Chr3g0130931 40.054 367 181 16 95 441 101 448 3.10e-60 203
Msa0501940 MtrunA17_Chr3g0095891 33.781 447 251 12 35 442 19 459 7.28e-60 202
Msa0501940 MtrunA17_Chr5g0442921 32.379 454 258 13 31 441 106 553 4.15e-54 189
Msa0501940 MtrunA17_Chr8g0390761 30.878 353 224 7 85 429 103 443 2.56e-45 163
Msa0501940 MtrunA17_Chr2g0310831 28.758 459 273 15 1 441 18 440 2.11e-43 158
Msa0501940 MtrunA17_Chr1g0164401 30.612 441 253 17 13 441 29 428 2.18e-43 157
Msa0501940 MtrunA17_Chr8g0353261 30.700 443 251 18 13 441 33 433 5.29e-42 154
Msa0501940 MtrunA17_Chr5g0419291 32.796 372 220 14 84 441 73 428 5.03e-41 151
Msa0501940 MtrunA17_Chr2g0310821 30.751 413 255 14 40 441 50 442 5.11e-41 151
Msa0501940 MtrunA17_Chr5g0435871 33.149 362 210 12 97 441 88 434 1.23e-40 150
Msa0501940 MtrunA17_Chr2g0310801 30.425 424 251 14 40 441 32 433 1.45e-39 147
Msa0501940 MtrunA17_Chr5g0435971 32.873 362 211 12 97 441 85 431 1.49e-39 147
Msa0501940 MtrunA17_Chr2g0333991 33.148 359 206 15 97 436 87 430 1.10e-38 145
Msa0501940 MtrunA17_Chr2g0311451 33.242 364 209 15 97 441 87 435 3.47e-38 143
Msa0501940 MtrunA17_Chr2g0307991 30.163 368 209 15 99 441 60 404 1.52e-37 141
Msa0501940 MtrunA17_Chr8g0386441 31.148 366 226 12 89 441 77 429 2.05e-37 141
Msa0501940 MtrunA17_Chr2g0308001 29.798 396 229 17 72 441 36 408 2.18e-37 141
Msa0501940 MtrunA17_Chr8g0352671 31.565 377 223 13 84 441 76 436 1.53e-36 139
Msa0501940 MtrunA17_Chr4g0027681 29.676 401 245 14 69 441 45 436 2.26e-36 139
Msa0501940 MtrunA17_Chr2g0309561 28.027 446 250 15 60 442 72 509 2.62e-36 139
Msa0501940 MtrunA17_Chr8g0352661 31.978 369 210 13 97 441 85 436 3.02e-36 138
Msa0501940 MtrunA17_Chr6g0487471 31.956 363 216 10 97 441 85 434 1.70e-34 133
Msa0501940 MtrunA17_Chr6g0486981 31.421 366 216 13 96 441 86 436 1.74e-34 133
Msa0501940 MtrunA17_Chr3g0087851 28.700 446 263 14 14 441 28 436 4.35e-34 132
Msa0501940 MtrunA17_Chr5g0395911 29.700 367 217 16 97 441 66 413 2.09e-33 130
Msa0501940 MtrunA17_Chr5g0395931 30.163 368 215 15 97 441 87 435 4.05e-33 129
Msa0501940 MtrunA17_Chr5g0415951 27.594 453 281 16 4 441 14 434 1.65e-32 128
Msa0501940 MtrunA17_Chr1g0189381 29.255 376 223 13 96 441 67 429 3.84e-32 127
Msa0501940 MtrunA17_Chr4g0053721 26.817 399 248 16 69 441 50 430 3.83e-31 126
Msa0501940 MtrunA17_Chr5g0395871 29.945 364 219 13 96 441 79 424 4.09e-31 124
Msa0501940 MtrunA17_Chr3g0133071 28.571 441 267 19 23 442 25 438 5.84e-30 120
Msa0501940 MtrunA17_Chr6g0457401 27.803 446 265 15 15 441 29 436 2.00e-29 119
Msa0501940 MtrunA17_Chr4g0023351 32.270 282 156 11 67 331 31 294 3.47e-29 115
Msa0501940 MtrunA17_Chr4g0061641 31.675 382 220 15 79 441 37 396 7.43e-29 117
Msa0501940 MtrunA17_Chr5g0401601 28.342 374 225 16 93 441 83 438 4.13e-28 117
Msa0501940 MtrunA17_Chr2g0320621 28.763 372 228 11 97 441 76 437 1.82e-27 114
Msa0501940 MtrunA17_Chr2g0307461 28.763 372 224 15 99 441 71 430 3.32e-27 112
Msa0501940 MtrunA17_Chr7g0265331 27.882 373 229 13 97 441 80 440 1.13e-26 112
Msa0501940 MtrunA17_Chr1g0179751 27.105 380 235 12 92 441 102 469 3.29e-26 110
Msa0501940 MtrunA17_Chr7g0267171 27.119 413 246 17 72 442 67 466 9.09e-26 109
Msa0501940 MtrunA17_Chr3g0082281 31.930 285 170 10 174 441 42 319 3.80e-25 105
Msa0501940 MtrunA17_Chr7g0221681 26.984 378 228 15 97 441 71 433 4.84e-25 107
Msa0501940 MtrunA17_Chr2g0312941 28.647 377 220 13 96 436 85 448 2.25e-24 105
Msa0501940 MtrunA17_Chr1g0179091 28.926 363 210 14 89 441 42 366 9.46e-24 102
Msa0501940 MtrunA17_Chr7g0239001 27.660 376 227 16 101 442 62 426 1.84e-23 102
Msa0501940 MtrunA17_Chr3g0110191 26.539 471 276 18 3 441 6 438 4.83e-23 100
Msa0501940 MtrunA17_Chr6g0484731 26.515 396 253 14 73 441 166 550 6.49e-23 101
Msa0501940 MtrunA17_Chr3g0112051 26.221 389 224 16 83 442 56 410 7.27e-23 100
Msa0501940 MtrunA17_Chr5g0434411 26.273 373 224 12 101 441 84 437 1.78e-22 99.4
Msa0501940 MtrunA17_Chr4g0056211 26.316 418 234 17 85 441 66 470 2.85e-22 99.0
Msa0501940 MtrunA17_Chr7g0249451 27.056 377 229 15 96 441 69 430 7.92e-22 97.8
Msa0501940 MtrunA17_Chr5g0406001 26.330 376 217 13 99 441 113 461 1.59e-21 97.1
Msa0501940 MtrunA17_Chr8g0371371 26.575 365 228 14 99 441 113 459 1.84e-21 97.1
Msa0501940 MtrunA17_Chr8g0384731 25.729 377 238 15 91 442 66 425 1.48e-20 93.6
Msa0501940 MtrunA17_Chr8g0371351 26.630 368 226 14 99 441 101 449 8.41e-20 91.7
Msa0501940 MtrunA17_Chr3g0130741 24.734 376 240 15 91 441 77 434 5.93e-18 85.9
Msa0501940 MtrunA17_Chr5g0399171 24.821 419 240 16 84 441 65 469 1.02e-17 85.1
Msa0501940 MtrunA17_Chr2g0287811 25.445 393 219 15 99 438 40 411 1.37e-16 81.6
Msa0501940 MtrunA17_Chr5g0419151 27.203 261 180 5 189 441 109 367 5.20e-16 79.3
Msa0501940 MtrunA17_Chr4g0010951 30.622 209 121 9 77 269 40 240 5.90e-16 79.7
Msa0501940 MtrunA17_Chr2g0287781 25.450 389 217 15 102 438 966 1333 8.65e-16 80.1
Msa0501940 MtrunA17_Chr2g0287781 25.707 389 216 15 102 438 504 871 1.24e-15 79.7
Msa0501940 MtrunA17_Chr2g0287781 26.629 353 200 15 99 407 37 374 1.72e-14 76.3
Msa0501940 MtrunA17_Chr1g0159791 25.867 375 241 14 91 442 50 410 2.16e-15 77.8
Msa0501940 MtrunA17_Chr3g0124421 23.702 443 276 17 33 442 38 451 2.89e-15 77.8
Msa0501940 MtrunA17_Chr8g0352691 29.304 273 159 11 188 441 2 259 3.18e-15 75.5
Msa0501940 MtrunA17_Chr2g0287841 25.352 355 210 15 99 413 68 407 3.87e-15 77.0
Msa0501940 MtrunA17_Chr5g0434441 26.301 365 236 13 101 441 71 426 7.54e-15 76.3
Msa0501940 MtrunA17_Chr1g0185661 23.684 418 254 17 68 438 17 416 3.48e-13 72.0
Msa0501940 MtrunA17_Chr2g0287861 24.507 355 213 14 99 413 44 383 1.09e-12 69.7
Msa0501940 MtrunA17_Chr8g0352681 46.053 76 39 2 97 172 86 159 1.27e-12 65.9
Msa0501940 MtrunA17_Chr5g0395891 25.079 315 198 13 155 441 8 312 3.54e-12 67.0
Msa0501940 MtrunA17_Chr4g0065581 24.697 413 215 17 99 438 50 439 1.56e-11 65.9
Msa0501940 MtrunA17_Chr2g0287821 21.684 392 243 15 95 438 65 440 2.42e-11 65.5
Msa0501940 MtrunA17_Chr1g0185651 23.410 393 228 17 99 436 57 431 4.92e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0501940 AT5G10770.1 59.447 434 159 4 9 441 56 473 0.0 520
Msa0501940 AT5G10760.1 47.477 436 198 8 8 441 58 464 1.18e-123 367
Msa0501940 AT1G79720.1 40.351 399 212 10 61 442 94 483 1.62e-79 254
Msa0501940 AT1G01300.1 38.278 418 231 11 42 441 76 484 1.07e-75 244
Msa0501940 AT3G61820.1 42.192 365 191 8 90 441 126 483 2.84e-74 241
Msa0501940 AT1G25510.1 37.530 413 223 11 42 441 93 483 3.11e-68 225
Msa0501940 AT3G18490.1 35.351 413 236 10 42 441 106 500 7.74e-67 222
Msa0501940 AT3G20015.1 39.779 362 195 10 90 441 122 470 6.44e-65 216
Msa0501940 AT2G03200.1 36.096 374 194 13 95 441 103 458 1.52e-56 194
Msa0501940 AT3G59080.1 33.025 433 249 13 44 441 106 532 1.92e-52 184
Msa0501940 AT2G42980.1 32.743 452 238 16 37 441 92 524 2.02e-52 184
Msa0501940 AT3G54400.1 30.958 449 252 20 6 441 21 424 2.14e-48 171
Msa0501940 AT1G09750.1 30.667 375 234 13 82 442 87 449 1.45e-44 161
Msa0501940 AT1G64830.1 30.824 425 246 15 40 441 29 428 3.45e-44 160
Msa0501940 AT3G25700.1 30.390 385 231 13 87 441 72 449 1.37e-42 156
Msa0501940 AT5G33340.1 33.425 362 213 12 95 441 86 434 9.46e-42 154
Msa0501940 AT3G12700.1 28.438 429 282 11 34 441 36 460 3.46e-41 152
Msa0501940 AT5G07030.1 31.209 455 236 23 13 441 51 454 3.72e-40 149
Msa0501940 AT3G59080.2 30.023 433 226 13 44 441 106 496 1.74e-39 149
Msa0501940 AT2G35615.1 27.646 463 272 15 5 441 18 443 3.42e-39 147
Msa0501940 AT1G31450.1 27.957 465 271 16 1 441 17 441 1.60e-37 142
Msa0501940 AT1G65240.1 28.109 402 251 14 64 441 39 426 2.96e-34 134
Msa0501940 AT2G28040.2 30.056 356 208 13 98 441 55 381 4.87e-34 131
Msa0501940 AT2G28010.1 27.202 386 241 12 68 441 34 391 8.82e-34 131
Msa0501940 AT2G28040.1 30.056 356 208 13 98 441 64 390 1.27e-33 130
Msa0501940 AT4G30040.1 28.193 415 252 13 49 436 32 427 3.61e-33 130
Msa0501940 AT3G02740.1 27.540 374 225 15 97 441 83 439 4.01e-32 128
Msa0501940 AT3G02740.2 27.419 372 224 15 99 441 10 364 7.79e-32 126
Msa0501940 AT4G30030.1 31.233 365 208 16 99 442 78 420 3.44e-31 124
Msa0501940 AT5G22850.1 28.226 372 230 11 97 441 79 440 8.83e-31 124
Msa0501940 AT2G28030.1 28.889 360 206 13 99 441 61 387 2.53e-30 121
Msa0501940 AT5G43100.2 27.957 372 221 15 93 441 70 417 3.19e-30 122
Msa0501940 AT2G23945.1 26.134 463 287 16 2 441 18 448 6.33e-30 121
Msa0501940 AT5G43100.1 27.957 372 221 15 93 441 70 417 7.17e-30 122
Msa0501940 AT2G28225.1 28.809 361 209 14 99 441 67 397 7.01e-29 117
Msa0501940 AT1G08210.4 27.642 369 233 12 97 441 116 474 1.72e-28 118
Msa0501940 AT1G08210.3 27.642 369 233 12 97 441 130 488 1.84e-28 118
Msa0501940 AT1G08210.1 27.642 369 233 12 97 441 82 440 2.06e-28 117
Msa0501940 AT3G50050.1 28.358 402 238 17 70 441 55 436 1.38e-27 116
Msa0501940 AT2G28220.1 26.764 411 250 16 51 441 18 397 3.30e-27 112
Msa0501940 AT2G36670.2 26.344 372 235 12 97 441 98 457 1.22e-25 109
Msa0501940 AT3G42550.1 26.341 410 230 20 55 441 29 389 1.37e-25 108
Msa0501940 AT2G36670.1 26.216 370 234 12 99 441 105 462 2.30e-25 108
Msa0501940 AT2G36670.4 26.216 370 234 12 99 441 34 391 2.49e-25 108
Msa0501940 AT2G36670.3 26.216 370 234 12 99 441 34 391 2.49e-25 108
Msa0501940 AT5G36260.1 24.661 442 256 17 30 441 39 433 3.35e-25 108
Msa0501940 AT5G45120.1 26.914 405 225 20 99 441 83 478 1.09e-24 106
Msa0501940 AT1G66180.1 27.467 375 216 14 101 441 74 426 2.11e-24 105
Msa0501940 AT1G08210.2 27.812 320 201 10 97 395 82 392 3.17e-24 105
Msa0501940 AT1G05840.1 27.056 377 227 15 97 441 78 438 4.68e-24 104
Msa0501940 AT5G37540.1 25.714 420 254 15 62 442 39 439 1.38e-23 102
Msa0501940 AT5G02190.1 28.075 374 218 16 108 442 82 443 1.95e-23 102
Msa0501940 AT3G52500.1 27.692 390 227 16 97 441 88 467 3.53e-23 102
Msa0501940 AT2G39710.1 26.247 381 220 17 101 439 67 428 4.83e-22 98.6
Msa0501940 AT3G51350.1 27.937 315 184 14 99 388 102 398 1.45e-20 94.7
Msa0501940 AT1G49050.1 23.094 446 294 18 31 441 137 568 3.47e-20 93.6
Msa0501940 AT4G35880.1 26.781 351 217 15 99 428 107 438 1.85e-19 91.3
Msa0501940 AT1G49050.3 25.076 331 223 12 31 346 137 457 2.19e-19 90.5
Msa0501940 AT4G35880.2 27.476 313 191 13 99 391 107 403 1.08e-18 88.6
Msa0501940 AT2G17760.1 27.100 369 220 17 99 441 104 449 2.16e-18 87.8
Msa0501940 AT1G49050.2 23.056 373 250 14 99 441 30 395 2.50e-18 87.0
Msa0501940 AT4G12920.1 23.243 370 253 11 82 442 41 388 5.98e-18 85.9
Msa0501940 AT1G77480.1 25.243 412 249 20 66 442 33 420 1.78e-17 84.7
Msa0501940 AT1G77480.2 25.243 412 249 20 66 442 33 420 2.21e-17 84.3
Msa0501940 AT3G51340.3 26.733 303 182 13 99 379 103 387 3.60e-17 83.6
Msa0501940 AT3G51340.2 26.733 303 182 13 99 379 103 387 3.83e-17 84.0
Msa0501940 AT4G33490.2 25.594 379 237 18 91 442 52 412 1.05e-16 82.4
Msa0501940 AT1G44130.1 27.363 402 226 21 78 442 28 400 1.30e-16 82.0
Msa0501940 AT3G51360.9 26.446 363 231 14 99 441 99 445 7.72e-16 80.1
Msa0501940 AT3G51340.1 26.224 286 173 12 99 362 103 372 8.05e-16 80.1
Msa0501940 AT3G51360.1 26.446 363 231 14 99 441 89 435 1.08e-15 79.3
Msa0501940 AT3G51360.7 26.171 363 232 13 99 441 5 351 1.27e-15 79.0
Msa0501940 AT3G51340.4 26.224 286 173 12 99 362 103 372 1.32e-15 78.6
Msa0501940 AT4G33490.1 28.763 299 176 16 67 352 31 305 1.64e-15 78.6
Msa0501940 AT3G25700.2 32.847 137 85 3 87 217 72 207 9.79e-15 75.9
Msa0501940 AT3G51330.3 23.784 370 239 14 99 442 102 454 1.06e-14 76.3
Msa0501940 AT3G51330.1 23.848 369 238 14 99 441 102 453 1.56e-14 75.9
Msa0501940 AT3G51330.2 24.522 314 197 12 99 388 102 399 5.56e-14 73.9
Msa0501940 AT5G24820.1 26.146 371 231 16 98 441 45 399 9.87e-11 63.9

Find 143 sgRNAs with CRISPR-Local

Find 372 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTAATTTGGAGGGATTTA+TGG 0.093359 3_4:+43815122 Msa0501940:CDS
AAGCTTGTTTCTGTCATTAA+AGG 0.177580 3_4:+43817051 Msa0501940:three_prime_UTR
GCCAAATCTGGTAGCCTTAT+TGG 0.187292 3_4:+43815198 Msa0501940:CDS
ATCTAAGAATAATATTAATT+TGG 0.227900 3_4:+43815110 Msa0501940:CDS
ATTCTTAGATGATAATAATT+TGG 0.231434 3_4:-43815097 None:intergenic
GATAGTGATATTACTATCTT+TGG 0.232623 3_4:+43816489 Msa0501940:CDS
TGATCAAGAGAAATTCTTAT+AGG 0.278657 3_4:-43816730 None:intergenic
TCCAATAAGGCTACCAGATT+TGG 0.281006 3_4:-43815199 None:intergenic
AAAATAAGAAGTTCTTGTTT+TGG 0.286694 3_4:+43817084 Msa0501940:three_prime_UTR
CAAGACAACGAAGGCCTATT+TGG 0.288583 3_4:+43815916 Msa0501940:CDS
TATATGCTTTGGGCTAAGTT+AGG 0.289042 3_4:+43816767 Msa0501940:three_prime_UTR
AGGGCTTGGTACTCCTAAAA+AGG 0.303517 3_4:+43815245 Msa0501940:CDS
AGTGCAAGTGATATTGTAAT+AGG 0.303795 3_4:-43815382 None:intergenic
GTATCAAATGCATGTGTATA+TGG 0.313629 3_4:+43815790 Msa0501940:CDS
ATGTTTCATTGTTCAAATTC+AGG 0.323319 3_4:+43814937 Msa0501940:CDS
GCATTACTGTTAGCCGTTCT+CGG 0.338039 3_4:-43815855 None:intergenic
CCATGTTCCCAACTGAATAA+TGG 0.341614 3_4:+43815003 Msa0501940:CDS
ATTGAAACCGCTGGAGCAAC+TGG 0.345160 3_4:-43816306 None:intergenic
GGCGTTGGCCACCTCACATT+TGG 0.347612 3_4:+43816048 Msa0501940:CDS
GGTTCCACCAACGCTGATTC+CGG 0.355405 3_4:-43816151 None:intergenic
CTTCGTCATGCCTTTCTTGA+AGG 0.357836 3_4:-43816280 None:intergenic
AATAGTTCCCTGATCCAATA+AGG 0.375683 3_4:-43815212 None:intergenic
TGGGAAACTGTGTGTTATAT+AGG 0.376250 3_4:+43816896 Msa0501940:three_prime_UTR
GAGTTTGAAGCAAGCTTGTT+TGG 0.377510 3_4:+43816446 Msa0501940:CDS
ACTTTAAGATGTATAATTGC+TGG 0.380862 3_4:+43816993 Msa0501940:three_prime_UTR
GATGTTGGTGCTGGTAAGAT+TGG 0.381169 3_4:+43816546 Msa0501940:CDS
AGAAGGATTGGTCACCATAT+TGG 0.384935 3_4:-43815816 None:intergenic
GGCCTATTTGGCGGCTCAGC+CGG 0.388639 3_4:+43815928 Msa0501940:CDS
ATATGCTTTGGGCTAAGTTA+GGG 0.391247 3_4:+43816768 Msa0501940:three_prime_UTR
GGTGCTGGTAAGATTGGGTT+TGG 0.396080 3_4:+43816552 Msa0501940:CDS
GACCGGCTGAGCCGCCAAAT+AGG 0.400383 3_4:-43815930 None:intergenic
GGCAATGTCAAGGCCGTAGA+AGG 0.407381 3_4:-43816130 None:intergenic
GCTAACCTACCAGCCAAATC+TGG 0.414039 3_4:+43815186 Msa0501940:CDS
TTCTACGGCCTTGACATTGC+CGG 0.414283 3_4:+43816132 Msa0501940:CDS
CAAATAGGCCTTCGTTGTCT+TGG 0.417790 3_4:-43815915 None:intergenic
TCTGGTAGCCTTATTGGATC+AGG 0.419706 3_4:+43815204 Msa0501940:CDS
GAGAAAATAGAGGATGAGAT+TGG 0.420183 3_4:-43816180 None:intergenic
TAATAGGAAGTAGACTTTGA+TGG 0.423284 3_4:-43815366 None:intergenic
GTTTGTTGGACGAATGAGAT+TGG 0.425702 3_4:-43815973 None:intergenic
GAACAATGAAACATGTTTAG+TGG 0.427560 3_4:-43814928 None:intergenic
ATGCCAACGGATGCCATTGA+TGG 0.432868 3_4:+43815874 Msa0501940:CDS
TCCCCGGGAGACCGTGGAAA+AGG 0.440785 3_4:-43816103 None:intergenic
CCATTATTCAGTTGGGAACA+TGG 0.444472 3_4:-43815003 None:intergenic
AGAGGATGAGATTGGAAGCT+TGG 0.445753 3_4:-43816172 None:intergenic
GGCGGCTCAGCCGGTCTATT+AGG 0.447709 3_4:+43815937 Msa0501940:CDS
TAGGGGAAAGAAAACTTGAT+TGG 0.449555 3_4:+43816786 Msa0501940:three_prime_UTR
GCAATAACATTAACAAATGC+CGG 0.451319 3_4:-43816811 None:intergenic
ATAGTGATATTACTATCTTT+GGG 0.452276 3_4:+43816490 Msa0501940:CDS
AACGGTACCAGAGTCAATAA+TGG 0.452998 3_4:-43816214 None:intergenic
TCAGCCGGTCTATTAGGCCT+TGG 0.466613 3_4:+43815943 Msa0501940:CDS
ATGTTGGTGCTGGTAAGATT+GGG 0.467919 3_4:+43816547 Msa0501940:CDS
TTCTTGATCATGACAAAGAA+AGG 0.474931 3_4:+43815058 Msa0501940:CDS
AAGAATAATATTAATTTGGA+GGG 0.476847 3_4:+43815114 Msa0501940:CDS
AAGATTGGGTTTGGATCAAA+TGG 0.477835 3_4:+43816561 Msa0501940:CDS
ATATCACTATCATCTCCATT+TGG 0.480356 3_4:-43816477 None:intergenic
GGGAAACTGTGTGTTATATA+GGG 0.483234 3_4:+43816897 Msa0501940:three_prime_UTR
AAGAATAGAAATGCAAAATG+TGG 0.483316 3_4:+43816876 Msa0501940:three_prime_UTR
ATATGGTGACCAATCCTTCT+CGG 0.483624 3_4:+43815819 Msa0501940:CDS
CTAGAGGTTGTTTATGATGT+TGG 0.484309 3_4:+43816531 Msa0501940:CDS
TGCCTTTCTTGAAGGAATCT+CGG 0.485188 3_4:-43816272 None:intergenic
TAAGAATAATATTAATTTGG+AGG 0.487415 3_4:+43815113 Msa0501940:CDS
ACGGTGGAAATAGCCGCGCC+AGG 0.495356 3_4:+43816408 Msa0501940:CDS
AGAATAGAAATGCAAAATGT+GGG 0.495711 3_4:+43816877 Msa0501940:three_prime_UTR
TGTGTATATGGCATCCAATA+TGG 0.499340 3_4:+43815802 Msa0501940:CDS
ATTTGATACTTTAGCACAGC+GGG 0.502036 3_4:-43815776 None:intergenic
CTTTGTGGGCAATGGTGATA+AGG 0.505581 3_4:+43816935 Msa0501940:three_prime_UTR
TTTCCTCGGTGGTGGTGTCA+CGG 0.509350 3_4:+43816389 Msa0501940:CDS
CTCCGAGATTCCTTCAAGAA+AGG 0.510214 3_4:+43816270 Msa0501940:CDS
CCCCGGGAGACCGTGGAAAA+GGG 0.511612 3_4:-43816102 None:intergenic
GTGTAATATATATTGATTGA+AGG 0.512044 3_4:+43816957 Msa0501940:three_prime_UTR
CAATAACATTAACAAATGCC+GGG 0.512648 3_4:-43816810 None:intergenic
CGCTGATTCCGGCAATGTCA+AGG 0.518348 3_4:-43816140 None:intergenic
ACTCAGCTCTCTTCAGCTAC+AGG 0.522499 3_4:+43815417 Msa0501940:CDS
GTTGTTTATGATGTTGGTGC+TGG 0.527246 3_4:+43816537 Msa0501940:CDS
AAAGAAAACTTGATTGGCCC+CGG 0.528492 3_4:+43816792 Msa0501940:three_prime_UTR
CCATCCACATCTAGTGGCGT+TGG 0.530126 3_4:+43816033 Msa0501940:CDS
GGCCGTAGAAGGAATTTCCC+CGG 0.531353 3_4:-43816119 None:intergenic
AGTATCCGACCGAGAAGGAT+TGG 0.531507 3_4:-43815828 None:intergenic
GTGTCTAAAATTGAAACCGC+TGG 0.532288 3_4:-43816315 None:intergenic
CTCGCCACGTAAAGTATCCC+TGG 0.532549 3_4:-43816426 None:intergenic
GACATTGCCGGAATCAGCGT+TGG 0.538029 3_4:+43816144 Msa0501940:CDS
ATTGCCGGAATCAGCGTTGG+TGG 0.539994 3_4:+43816147 Msa0501940:CDS
CGGAGGCAGCCGTGTAATAA+CGG 0.541209 3_4:-43816232 None:intergenic
TGTAATATATATTGATTGAA+GGG 0.541557 3_4:+43816958 Msa0501940:three_prime_UTR
TCCCGGGGAAATTCCTTCTA+CGG 0.553908 3_4:+43816117 Msa0501940:CDS
ACACATGCTATGATCTTAGC+GGG 0.560360 3_4:+43816334 Msa0501940:CDS
TCTTGATCATGACAAAGAAA+GGG 0.562809 3_4:+43815059 Msa0501940:CDS
GAAGATGACTTTGTGGGCAA+TGG 0.563163 3_4:+43816927 Msa0501940:three_prime_UTR
GACAACGAAGGCCTATTTGG+CGG 0.563446 3_4:+43815919 Msa0501940:CDS
GGTGGTGCCATTATTGACTC+TGG 0.564716 3_4:+43816207 Msa0501940:CDS
TTAGCACTAAATAATCATGT+GGG 0.569357 3_4:+43816837 Msa0501940:three_prime_UTR
CGGTGGAAATAGCCGCGCCA+GGG 0.571257 3_4:+43816409 Msa0501940:CDS
CTGGTAGCCTTATTGGATCA+GGG 0.571400 3_4:+43815205 Msa0501940:CDS
ACGACCAAGGCCTAATAGAC+CGG 0.573188 3_4:-43815947 None:intergenic
GGAATTTCCCCGGGAGACCG+TGG 0.575875 3_4:-43816109 None:intergenic
TTTAGCACTAAATAATCATG+TGG 0.577841 3_4:+43816836 Msa0501940:three_prime_UTR
TGTCTTCCATCCACATCTAG+TGG 0.582746 3_4:+43816027 Msa0501940:CDS
GTCAATAATGGCACCACCGG+AGG 0.582980 3_4:-43816202 None:intergenic
GCTGAAGTATCCGACCGAGA+AGG 0.583304 3_4:-43815833 None:intergenic
GAAGTATCCAGTTGCTCCAG+CGG 0.586502 3_4:+43816299 Msa0501940:CDS
ACTCAATGTCAACCTTGTGT+TGG 0.586542 3_4:+43815309 Msa0501940:CDS
GACACATGCTATGATCTTAG+CGG 0.587792 3_4:+43816333 Msa0501940:CDS
ACACTGGTAGTGATCTCACT+TGG 0.590545 3_4:+43815286 Msa0501940:CDS
ACCACCGGAGGAGAAAATAG+AGG 0.591518 3_4:-43816190 None:intergenic
ATCTCGGAGGCTAGCATAGG+CGG 0.591836 3_4:-43816256 None:intergenic
TCGGATACTTCAGCCGAGAA+CGG 0.594167 3_4:+43815842 Msa0501940:CDS
AAACCATCAATGGCATCCGT+TGG 0.600469 3_4:-43815877 None:intergenic
AGAGTCAATAATGGCACCAC+CGG 0.600672 3_4:-43816205 None:intergenic
GCCGTAGAAGGAATTTCCCC+GGG 0.603129 3_4:-43816118 None:intergenic
GGAATCTCGGAGGCTAGCAT+AGG 0.604176 3_4:-43816259 None:intergenic
TAGCACTAAATAATCATGTG+GGG 0.607750 3_4:+43816838 Msa0501940:three_prime_UTR
CCAACGCCACTAGATGTGGA+TGG 0.608906 3_4:-43816033 None:intergenic
TATGCTTTGGGCTAAGTTAG+GGG 0.612467 3_4:+43816769 Msa0501940:three_prime_UTR
ATAAGGCTACCAGATTTGGC+TGG 0.613804 3_4:-43815195 None:intergenic
GGTGACCAATCCTTCTCGGT+CGG 0.613891 3_4:+43815823 Msa0501940:CDS
GTGGTTGAAGATGACTTTGT+GGG 0.618321 3_4:+43816921 Msa0501940:three_prime_UTR
TCAAGAATATCACTGTGTGT+TGG 0.629293 3_4:-43815042 None:intergenic
TATCGGAGGCGCCAAATGTG+AGG 0.631537 3_4:-43816059 None:intergenic
TTAGATGTGTTACACAAACA+TGG 0.632092 3_4:+43814979 Msa0501940:CDS
GGCTACCAGATTTGGCTGGT+AGG 0.632445 3_4:-43815191 None:intergenic
ACTGTGTGTTATATAGGGAG+TGG 0.636101 3_4:+43816902 Msa0501940:three_prime_UTR
AGCACTAAATAATCATGTGG+GGG 0.636994 3_4:+43816839 Msa0501940:three_prime_UTR
CGCGCCAGGGATACTTTACG+TGG 0.637038 3_4:+43816422 Msa0501940:CDS
AGGCTAGCATAGGCGGTCGG+AGG 0.645358 3_4:-43816249 None:intergenic
CACGTAAAGTATCCCTGGCG+CGG 0.653433 3_4:-43816421 None:intergenic
GTGGCCAACGCCACTAGATG+TGG 0.653881 3_4:-43816037 None:intergenic
CGGAGGCGCCAAATGTGAGG+TGG 0.653932 3_4:-43816056 None:intergenic
TAGATGTGTTACACAAACAT+GGG 0.656261 3_4:+43814980 Msa0501940:CDS
CGGAGGCTAGCATAGGCGGT+CGG 0.657114 3_4:-43816252 None:intergenic
TTGATACTTTAGCACAGCGG+GGG 0.657436 3_4:-43815774 None:intergenic
ACTCTGGTACCGTTATTACA+CGG 0.660158 3_4:+43816223 Msa0501940:CDS
ATGAGATTGGATGACGACCA+AGG 0.662262 3_4:-43815960 None:intergenic
AGTGGTTGAAGATGACTTTG+TGG 0.664169 3_4:+43816920 Msa0501940:three_prime_UTR
GGTTGCGGCCAAGACAACGA+AGG 0.682688 3_4:+43815907 Msa0501940:CDS
CCTCGGTGGTGGTGTCACGG+TGG 0.687294 3_4:+43816392 Msa0501940:CDS
TGTGCAACAAAGAACACTAG+AGG 0.689240 3_4:+43816515 Msa0501940:CDS
AATAACATTAACAAATGCCG+GGG 0.689403 3_4:-43816809 None:intergenic
CATTTGATACTTTAGCACAG+CGG 0.696960 3_4:-43815777 None:intergenic
TTGTAGCAAGAACCAACACA+AGG 0.700320 3_4:-43815321 None:intergenic
ACGGCTAACAGTAATGCCAA+CGG 0.700838 3_4:+43815861 Msa0501940:CDS
CTTTCTTGAAGGAATCTCGG+AGG 0.711283 3_4:-43816269 None:intergenic
TTTGATACTTTAGCACAGCG+GGG 0.728977 3_4:-43815775 None:intergenic
CCACCGTGACACCACCACCG+AGG 0.762194 3_4:-43816392 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCTAAGAATAATATTAATT+TGG + chr3_4:43815110-43815129 Msa0501940:CDS 10.0%
!!! TGTTACATTATTATTTTTAT+AGG + chr3_4:43815705-43815724 Msa0501940:intron 10.0%
!!! GTTACATTATTATTTTTATA+GGG + chr3_4:43815706-43815725 Msa0501940:intron 10.0%
!!! TGTAATAATAATGATTTTTT+GGG - chr3_4:43815746-43815765 None:intergenic 10.0%
!! ATCTAAGAATAATATTAATT+TGG + chr3_4:43815110-43815129 Msa0501940:CDS 10.0%
!!! TGTTACATTATTATTTTTAT+AGG + chr3_4:43815705-43815724 Msa0501940:intron 10.0%
!!! GTTACATTATTATTTTTATA+GGG + chr3_4:43815706-43815725 Msa0501940:intron 10.0%
!!! TGTAATAATAATGATTTTTT+GGG - chr3_4:43815746-43815765 None:intergenic 10.0%
!! ATTCTTAGATGATAATAATT+TGG - chr3_4:43815100-43815119 None:intergenic 15.0%
!!! TAAGAATAATATTAATTTGG+AGG + chr3_4:43815113-43815132 Msa0501940:CDS 15.0%
!!! AAGAATAATATTAATTTGGA+GGG + chr3_4:43815114-43815133 Msa0501940:CDS 15.0%
!!! CTGTAATAATAATGATTTTT+TGG - chr3_4:43815747-43815766 None:intergenic 15.0%
!! CAAAAAATCATTATTATTAC+AGG + chr3_4:43815745-43815764 Msa0501940:intron 15.0%
!!! GTATTTTACATACTTATTAT+CGG - chr3_4:43816079-43816098 None:intergenic 15.0%
!!! ATTTTATCTTATATATGCTT+TGG + chr3_4:43816756-43816775 Msa0501940:three_prime_UTR 15.0%
!!! TTTTATCTTATATATGCTTT+GGG + chr3_4:43816757-43816776 Msa0501940:three_prime_UTR 15.0%
!!! TGTAATATATATTGATTGAA+GGG + chr3_4:43816958-43816977 Msa0501940:three_prime_UTR 15.0%
!! ATTCTTAGATGATAATAATT+TGG - chr3_4:43815100-43815119 None:intergenic 15.0%
!!! TAAGAATAATATTAATTTGG+AGG + chr3_4:43815113-43815132 Msa0501940:CDS 15.0%
!!! AAGAATAATATTAATTTGGA+GGG + chr3_4:43815114-43815133 Msa0501940:CDS 15.0%
!!! CTGTAATAATAATGATTTTT+TGG - chr3_4:43815747-43815766 None:intergenic 15.0%
!! CAAAAAATCATTATTATTAC+AGG + chr3_4:43815745-43815764 Msa0501940:intron 15.0%
!!! GTATTTTACATACTTATTAT+CGG - chr3_4:43816079-43816098 None:intergenic 15.0%
!!! ATTTTATCTTATATATGCTT+TGG + chr3_4:43816756-43816775 Msa0501940:three_prime_UTR 15.0%
!!! TTTTATCTTATATATGCTTT+GGG + chr3_4:43816757-43816776 Msa0501940:three_prime_UTR 15.0%
!!! TGTAATATATATTGATTGAA+GGG + chr3_4:43816958-43816977 Msa0501940:three_prime_UTR 15.0%
!!! ATATTATTATCTTTGAAGCA+CGG + chr3_4:43815443-43815462 Msa0501940:intron 20.0%
!! ATATAATAATCTATGAAGCA+CGG - chr3_4:43815588-43815607 None:intergenic 20.0%
!! ATAGTGATATTACTATCTTT+GGG + chr3_4:43816490-43816509 Msa0501940:CDS 20.0%
!!! TTTCATTTTGCTTGATTAAT+TGG - chr3_4:43816650-43816669 None:intergenic 20.0%
!! TCAAAAACTCAAAATACAAT+TGG - chr3_4:43816684-43816703 None:intergenic 20.0%
!!! GTGTAATATATATTGATTGA+AGG + chr3_4:43816957-43816976 Msa0501940:three_prime_UTR 20.0%
!!! AAAATAAGAAGTTCTTGTTT+TGG + chr3_4:43817084-43817103 Msa0501940:three_prime_UTR 20.0%
!!! ATATTATTATCTTTGAAGCA+CGG + chr3_4:43815443-43815462 Msa0501940:intron 20.0%
!! ATATAATAATCTATGAAGCA+CGG - chr3_4:43815588-43815607 None:intergenic 20.0%
!! ATAGTGATATTACTATCTTT+GGG + chr3_4:43816490-43816509 Msa0501940:CDS 20.0%
!!! TTTCATTTTGCTTGATTAAT+TGG - chr3_4:43816650-43816669 None:intergenic 20.0%
!! TCAAAAACTCAAAATACAAT+TGG - chr3_4:43816684-43816703 None:intergenic 20.0%
!!! GTGTAATATATATTGATTGA+AGG + chr3_4:43816957-43816976 Msa0501940:three_prime_UTR 20.0%
!!! AAAATAAGAAGTTCTTGTTT+TGG + chr3_4:43817084-43817103 Msa0501940:three_prime_UTR 20.0%
! ATGTTTCATTGTTCAAATTC+AGG + chr3_4:43814937-43814956 Msa0501940:CDS 25.0%
!!! ATCTAATGATGCTTTTGTTT+TGG - chr3_4:43814965-43814984 None:intergenic 25.0%
!! TATTAATTTGGAGGGATTTA+TGG + chr3_4:43815122-43815141 Msa0501940:CDS 25.0%
!! ATAAGTGACAAATCCTTTTT+AGG - chr3_4:43815261-43815280 None:intergenic 25.0%
! TTTCAAATTATTAGCTGTGT+CGG - chr3_4:43815497-43815516 None:intergenic 25.0%
! ACCAAATAAAAAACCATCAA+TGG - chr3_4:43815890-43815909 None:intergenic 25.0%
!!! GACAATAAGAGAAAGTTTTT+TGG - chr3_4:43816011-43816030 None:intergenic 25.0%
!! TTTTACATACTTATTATCGG+AGG - chr3_4:43816076-43816095 None:intergenic 25.0%
! GATAGTGATATTACTATCTT+TGG + chr3_4:43816489-43816508 Msa0501940:CDS 25.0%
!!! TTTGAGTTTTTGATTGATCA+AGG + chr3_4:43816691-43816710 Msa0501940:three_prime_UTR 25.0%
! TGATCAAGAGAAATTCTTAT+AGG - chr3_4:43816733-43816752 None:intergenic 25.0%
! TTTAGCACTAAATAATCATG+TGG + chr3_4:43816836-43816855 Msa0501940:three_prime_UTR 25.0%
! TTAGCACTAAATAATCATGT+GGG + chr3_4:43816837-43816856 Msa0501940:three_prime_UTR 25.0%
! AAGAATAGAAATGCAAAATG+TGG + chr3_4:43816876-43816895 Msa0501940:three_prime_UTR 25.0%
! AGAATAGAAATGCAAAATGT+GGG + chr3_4:43816877-43816896 Msa0501940:three_prime_UTR 25.0%
!!! ACTTTAAGATGTATAATTGC+TGG + chr3_4:43816993-43817012 Msa0501940:three_prime_UTR 25.0%
! ATGTTTCATTGTTCAAATTC+AGG + chr3_4:43814937-43814956 Msa0501940:CDS 25.0%
!!! ATCTAATGATGCTTTTGTTT+TGG - chr3_4:43814965-43814984 None:intergenic 25.0%
!! TATTAATTTGGAGGGATTTA+TGG + chr3_4:43815122-43815141 Msa0501940:CDS 25.0%
!! ATAAGTGACAAATCCTTTTT+AGG - chr3_4:43815261-43815280 None:intergenic 25.0%
! TTTCAAATTATTAGCTGTGT+CGG - chr3_4:43815497-43815516 None:intergenic 25.0%
! ACCAAATAAAAAACCATCAA+TGG - chr3_4:43815890-43815909 None:intergenic 25.0%
!!! GACAATAAGAGAAAGTTTTT+TGG - chr3_4:43816011-43816030 None:intergenic 25.0%
!! TTTTACATACTTATTATCGG+AGG - chr3_4:43816076-43816095 None:intergenic 25.0%
! GATAGTGATATTACTATCTT+TGG + chr3_4:43816489-43816508 Msa0501940:CDS 25.0%
!!! TTTGAGTTTTTGATTGATCA+AGG + chr3_4:43816691-43816710 Msa0501940:three_prime_UTR 25.0%
! TGATCAAGAGAAATTCTTAT+AGG - chr3_4:43816733-43816752 None:intergenic 25.0%
! TTTAGCACTAAATAATCATG+TGG + chr3_4:43816836-43816855 Msa0501940:three_prime_UTR 25.0%
! TTAGCACTAAATAATCATGT+GGG + chr3_4:43816837-43816856 Msa0501940:three_prime_UTR 25.0%
! AAGAATAGAAATGCAAAATG+TGG + chr3_4:43816876-43816895 Msa0501940:three_prime_UTR 25.0%
! AGAATAGAAATGCAAAATGT+GGG + chr3_4:43816877-43816896 Msa0501940:three_prime_UTR 25.0%
!!! ACTTTAAGATGTATAATTGC+TGG + chr3_4:43816993-43817012 Msa0501940:three_prime_UTR 25.0%
GAACAATGAAACATGTTTAG+TGG - chr3_4:43814931-43814950 None:intergenic 30.0%
TTAGATGTGTTACACAAACA+TGG + chr3_4:43814979-43814998 Msa0501940:CDS 30.0%
TAGATGTGTTACACAAACAT+GGG + chr3_4:43814980-43814999 Msa0501940:CDS 30.0%
! TGCTTTTCCATTATTCAGTT+GGG - chr3_4:43815013-43815032 None:intergenic 30.0%
!! TTGCTTTTCCATTATTCAGT+TGG - chr3_4:43815014-43815033 None:intergenic 30.0%
TTCTTGATCATGACAAAGAA+AGG + chr3_4:43815058-43815077 Msa0501940:CDS 30.0%
TCTTGATCATGACAAAGAAA+GGG + chr3_4:43815059-43815078 Msa0501940:CDS 30.0%
!!! GGAACTATTTTGTTGTTGTA+GGG + chr3_4:43815226-43815245 Msa0501940:CDS 30.0%
!!! TTGTCACTTATTTTTGACAC+TGG + chr3_4:43815270-43815289 Msa0501940:CDS 30.0%
TAATAGGAAGTAGACTTTGA+TGG - chr3_4:43815369-43815388 None:intergenic 30.0%
AGTGCAAGTGATATTGTAAT+AGG - chr3_4:43815385-43815404 None:intergenic 30.0%
GTATCAAATGCATGTGTATA+TGG + chr3_4:43815790-43815809 Msa0501940:CDS 30.0%
!!! GCCATTGATGGTTTTTTATT+TGG + chr3_4:43815886-43815905 Msa0501940:CDS 30.0%
!!! GATGGTTTTTTATTTGGTTG+CGG + chr3_4:43815892-43815911 Msa0501940:CDS 30.0%
!!! GGTATTTTTGAGATGTTTGT+TGG - chr3_4:43815990-43816009 None:intergenic 30.0%
GAAAAAACTAATCTTCGGAA+TGG - chr3_4:43816373-43816392 None:intergenic 30.0%
ATATCACTATCATCTCCATT+TGG - chr3_4:43816480-43816499 None:intergenic 30.0%
AATAACATTAACAAATGCCG+GGG - chr3_4:43816812-43816831 None:intergenic 30.0%
CAATAACATTAACAAATGCC+GGG - chr3_4:43816813-43816832 None:intergenic 30.0%
GCAATAACATTAACAAATGC+CGG - chr3_4:43816814-43816833 None:intergenic 30.0%
TAGCACTAAATAATCATGTG+GGG + chr3_4:43816838-43816857 Msa0501940:three_prime_UTR 30.0%
!! AAGCTTGTTTCTGTCATTAA+AGG + chr3_4:43817051-43817070 Msa0501940:three_prime_UTR 30.0%
GAACAATGAAACATGTTTAG+TGG - chr3_4:43814931-43814950 None:intergenic 30.0%
TTAGATGTGTTACACAAACA+TGG + chr3_4:43814979-43814998 Msa0501940:CDS 30.0%
TAGATGTGTTACACAAACAT+GGG + chr3_4:43814980-43814999 Msa0501940:CDS 30.0%
! TGCTTTTCCATTATTCAGTT+GGG - chr3_4:43815013-43815032 None:intergenic 30.0%
!! TTGCTTTTCCATTATTCAGT+TGG - chr3_4:43815014-43815033 None:intergenic 30.0%
TTCTTGATCATGACAAAGAA+AGG + chr3_4:43815058-43815077 Msa0501940:CDS 30.0%
TCTTGATCATGACAAAGAAA+GGG + chr3_4:43815059-43815078 Msa0501940:CDS 30.0%
!!! GGAACTATTTTGTTGTTGTA+GGG + chr3_4:43815226-43815245 Msa0501940:CDS 30.0%
!!! TTGTCACTTATTTTTGACAC+TGG + chr3_4:43815270-43815289 Msa0501940:CDS 30.0%
TAATAGGAAGTAGACTTTGA+TGG - chr3_4:43815369-43815388 None:intergenic 30.0%
AGTGCAAGTGATATTGTAAT+AGG - chr3_4:43815385-43815404 None:intergenic 30.0%
GTATCAAATGCATGTGTATA+TGG + chr3_4:43815790-43815809 Msa0501940:CDS 30.0%
!!! GCCATTGATGGTTTTTTATT+TGG + chr3_4:43815886-43815905 Msa0501940:CDS 30.0%
!!! GATGGTTTTTTATTTGGTTG+CGG + chr3_4:43815892-43815911 Msa0501940:CDS 30.0%
!!! GGTATTTTTGAGATGTTTGT+TGG - chr3_4:43815990-43816009 None:intergenic 30.0%
GAAAAAACTAATCTTCGGAA+TGG - chr3_4:43816373-43816392 None:intergenic 30.0%
ATATCACTATCATCTCCATT+TGG - chr3_4:43816480-43816499 None:intergenic 30.0%
AATAACATTAACAAATGCCG+GGG - chr3_4:43816812-43816831 None:intergenic 30.0%
CAATAACATTAACAAATGCC+GGG - chr3_4:43816813-43816832 None:intergenic 30.0%
GCAATAACATTAACAAATGC+CGG - chr3_4:43816814-43816833 None:intergenic 30.0%
TAGCACTAAATAATCATGTG+GGG + chr3_4:43816838-43816857 Msa0501940:three_prime_UTR 30.0%
!! AAGCTTGTTTCTGTCATTAA+AGG + chr3_4:43817051-43817070 Msa0501940:three_prime_UTR 30.0%
TCAAGAATATCACTGTGTGT+TGG - chr3_4:43815045-43815064 None:intergenic 35.0%
AATAGTTCCCTGATCCAATA+AGG - chr3_4:43815215-43815234 None:intergenic 35.0%
!!! GGGAACTATTTTGTTGTTGT+AGG + chr3_4:43815225-43815244 Msa0501940:CDS 35.0%
!!! TATTTTGTTGTTGTAGGGCT+TGG + chr3_4:43815231-43815250 Msa0501940:CDS 35.0%
!! TTATCTTTGAAGCACGGATA+TGG + chr3_4:43815449-43815468 Msa0501940:intron 35.0%
ATTTGATACTTTAGCACAGC+GGG - chr3_4:43815779-43815798 None:intergenic 35.0%
CATTTGATACTTTAGCACAG+CGG - chr3_4:43815780-43815799 None:intergenic 35.0%
TGTGTATATGGCATCCAATA+TGG + chr3_4:43815802-43815821 Msa0501940:CDS 35.0%
! AAAATACACTCCCTTTTCCA+CGG + chr3_4:43816092-43816111 Msa0501940:CDS 35.0%
GAGAAAATAGAGGATGAGAT+TGG - chr3_4:43816183-43816202 None:intergenic 35.0%
CCGAGGAAAAAACTAATCTT+CGG - chr3_4:43816378-43816397 None:intergenic 35.0%
!!! CCGAAGATTAGTTTTTTCCT+CGG + chr3_4:43816375-43816394 Msa0501940:CDS 35.0%
!!! AAGATTAGTTTTTTCCTCGG+TGG + chr3_4:43816378-43816397 Msa0501940:CDS 35.0%
CTAGAGGTTGTTTATGATGT+TGG + chr3_4:43816531-43816550 Msa0501940:CDS 35.0%
AAGATTGGGTTTGGATCAAA+TGG + chr3_4:43816561-43816580 Msa0501940:CDS 35.0%
! TATATGCTTTGGGCTAAGTT+AGG + chr3_4:43816767-43816786 Msa0501940:three_prime_UTR 35.0%
! ATATGCTTTGGGCTAAGTTA+GGG + chr3_4:43816768-43816787 Msa0501940:three_prime_UTR 35.0%
TAGGGGAAAGAAAACTTGAT+TGG + chr3_4:43816786-43816805 Msa0501940:three_prime_UTR 35.0%
AGCACTAAATAATCATGTGG+GGG + chr3_4:43816839-43816858 Msa0501940:three_prime_UTR 35.0%
TGGGAAACTGTGTGTTATAT+AGG + chr3_4:43816896-43816915 Msa0501940:three_prime_UTR 35.0%
GGGAAACTGTGTGTTATATA+GGG + chr3_4:43816897-43816916 Msa0501940:three_prime_UTR 35.0%
TCAAGAATATCACTGTGTGT+TGG - chr3_4:43815045-43815064 None:intergenic 35.0%
AATAGTTCCCTGATCCAATA+AGG - chr3_4:43815215-43815234 None:intergenic 35.0%
!!! GGGAACTATTTTGTTGTTGT+AGG + chr3_4:43815225-43815244 Msa0501940:CDS 35.0%
!!! TATTTTGTTGTTGTAGGGCT+TGG + chr3_4:43815231-43815250 Msa0501940:CDS 35.0%
!! TTATCTTTGAAGCACGGATA+TGG + chr3_4:43815449-43815468 Msa0501940:intron 35.0%
ATTTGATACTTTAGCACAGC+GGG - chr3_4:43815779-43815798 None:intergenic 35.0%
CATTTGATACTTTAGCACAG+CGG - chr3_4:43815780-43815799 None:intergenic 35.0%
TGTGTATATGGCATCCAATA+TGG + chr3_4:43815802-43815821 Msa0501940:CDS 35.0%
! AAAATACACTCCCTTTTCCA+CGG + chr3_4:43816092-43816111 Msa0501940:CDS 35.0%
GAGAAAATAGAGGATGAGAT+TGG - chr3_4:43816183-43816202 None:intergenic 35.0%
CCGAGGAAAAAACTAATCTT+CGG - chr3_4:43816378-43816397 None:intergenic 35.0%
!!! CCGAAGATTAGTTTTTTCCT+CGG + chr3_4:43816375-43816394 Msa0501940:CDS 35.0%
!!! AAGATTAGTTTTTTCCTCGG+TGG + chr3_4:43816378-43816397 Msa0501940:CDS 35.0%
CTAGAGGTTGTTTATGATGT+TGG + chr3_4:43816531-43816550 Msa0501940:CDS 35.0%
AAGATTGGGTTTGGATCAAA+TGG + chr3_4:43816561-43816580 Msa0501940:CDS 35.0%
! TATATGCTTTGGGCTAAGTT+AGG + chr3_4:43816767-43816786 Msa0501940:three_prime_UTR 35.0%
! ATATGCTTTGGGCTAAGTTA+GGG + chr3_4:43816768-43816787 Msa0501940:three_prime_UTR 35.0%
TAGGGGAAAGAAAACTTGAT+TGG + chr3_4:43816786-43816805 Msa0501940:three_prime_UTR 35.0%
AGCACTAAATAATCATGTGG+GGG + chr3_4:43816839-43816858 Msa0501940:three_prime_UTR 35.0%
TGGGAAACTGTGTGTTATAT+AGG + chr3_4:43816896-43816915 Msa0501940:three_prime_UTR 35.0%
GGGAAACTGTGTGTTATATA+GGG + chr3_4:43816897-43816916 Msa0501940:three_prime_UTR 35.0%
CCATTATTCAGTTGGGAACA+TGG - chr3_4:43815006-43815025 None:intergenic 40.0%
CCATGTTCCCAACTGAATAA+TGG + chr3_4:43815003-43815022 Msa0501940:CDS 40.0%
TCCAATAAGGCTACCAGATT+TGG - chr3_4:43815202-43815221 None:intergenic 40.0%
ACTCAATGTCAACCTTGTGT+TGG + chr3_4:43815309-43815328 Msa0501940:CDS 40.0%
TTGTAGCAAGAACCAACACA+AGG - chr3_4:43815324-43815343 None:intergenic 40.0%
GTGATTACAAGTGTCAGTGT+CGG + chr3_4:43815536-43815555 Msa0501940:intron 40.0%
TTTGATACTTTAGCACAGCG+GGG - chr3_4:43815778-43815797 None:intergenic 40.0%
!! AGAAGGATTGGTCACCATAT+TGG - chr3_4:43815819-43815838 None:intergenic 40.0%
ATATGGTGACCAATCCTTCT+CGG + chr3_4:43815819-43815838 Msa0501940:CDS 40.0%
! GTTTGTTGGACGAATGAGAT+TGG - chr3_4:43815976-43815995 None:intergenic 40.0%
! TCATCCTCTATTTTCTCCTC+CGG + chr3_4:43816186-43816205 Msa0501940:CDS 40.0%
AACGGTACCAGAGTCAATAA+TGG - chr3_4:43816217-43816236 None:intergenic 40.0%
ACTCTGGTACCGTTATTACA+CGG + chr3_4:43816223-43816242 Msa0501940:CDS 40.0%
TGCCTTTCTTGAAGGAATCT+CGG - chr3_4:43816275-43816294 None:intergenic 40.0%
! GTGTCTAAAATTGAAACCGC+TGG - chr3_4:43816318-43816337 None:intergenic 40.0%
GACACATGCTATGATCTTAG+CGG + chr3_4:43816333-43816352 Msa0501940:CDS 40.0%
ACACATGCTATGATCTTAGC+GGG + chr3_4:43816334-43816353 Msa0501940:CDS 40.0%
!!! ATTAGTTTTTTCCTCGGTGG+TGG + chr3_4:43816381-43816400 Msa0501940:CDS 40.0%
! GAGTTTGAAGCAAGCTTGTT+TGG + chr3_4:43816446-43816465 Msa0501940:CDS 40.0%
TGTGCAACAAAGAACACTAG+AGG + chr3_4:43816515-43816534 Msa0501940:CDS 40.0%
GTTGTTTATGATGTTGGTGC+TGG + chr3_4:43816537-43816556 Msa0501940:CDS 40.0%
!! ATGTTGGTGCTGGTAAGATT+GGG + chr3_4:43816547-43816566 Msa0501940:CDS 40.0%
! TATGCTTTGGGCTAAGTTAG+GGG + chr3_4:43816769-43816788 Msa0501940:three_prime_UTR 40.0%
! AAAGAAAACTTGATTGGCCC+CGG + chr3_4:43816792-43816811 Msa0501940:three_prime_UTR 40.0%
ACTGTGTGTTATATAGGGAG+TGG + chr3_4:43816902-43816921 Msa0501940:three_prime_UTR 40.0%
AGTGGTTGAAGATGACTTTG+TGG + chr3_4:43816920-43816939 Msa0501940:three_prime_UTR 40.0%
GTGGTTGAAGATGACTTTGT+GGG + chr3_4:43816921-43816940 Msa0501940:three_prime_UTR 40.0%
CCATTATTCAGTTGGGAACA+TGG - chr3_4:43815006-43815025 None:intergenic 40.0%
CCATGTTCCCAACTGAATAA+TGG + chr3_4:43815003-43815022 Msa0501940:CDS 40.0%
TCCAATAAGGCTACCAGATT+TGG - chr3_4:43815202-43815221 None:intergenic 40.0%
ACTCAATGTCAACCTTGTGT+TGG + chr3_4:43815309-43815328 Msa0501940:CDS 40.0%
TTGTAGCAAGAACCAACACA+AGG - chr3_4:43815324-43815343 None:intergenic 40.0%
GTGATTACAAGTGTCAGTGT+CGG + chr3_4:43815536-43815555 Msa0501940:intron 40.0%
TTTGATACTTTAGCACAGCG+GGG - chr3_4:43815778-43815797 None:intergenic 40.0%
!! AGAAGGATTGGTCACCATAT+TGG - chr3_4:43815819-43815838 None:intergenic 40.0%
ATATGGTGACCAATCCTTCT+CGG + chr3_4:43815819-43815838 Msa0501940:CDS 40.0%
! GTTTGTTGGACGAATGAGAT+TGG - chr3_4:43815976-43815995 None:intergenic 40.0%
! TCATCCTCTATTTTCTCCTC+CGG + chr3_4:43816186-43816205 Msa0501940:CDS 40.0%
AACGGTACCAGAGTCAATAA+TGG - chr3_4:43816217-43816236 None:intergenic 40.0%
ACTCTGGTACCGTTATTACA+CGG + chr3_4:43816223-43816242 Msa0501940:CDS 40.0%
TGCCTTTCTTGAAGGAATCT+CGG - chr3_4:43816275-43816294 None:intergenic 40.0%
! GTGTCTAAAATTGAAACCGC+TGG - chr3_4:43816318-43816337 None:intergenic 40.0%
GACACATGCTATGATCTTAG+CGG + chr3_4:43816333-43816352 Msa0501940:CDS 40.0%
ACACATGCTATGATCTTAGC+GGG + chr3_4:43816334-43816353 Msa0501940:CDS 40.0%
!!! ATTAGTTTTTTCCTCGGTGG+TGG + chr3_4:43816381-43816400 Msa0501940:CDS 40.0%
! GAGTTTGAAGCAAGCTTGTT+TGG + chr3_4:43816446-43816465 Msa0501940:CDS 40.0%
TGTGCAACAAAGAACACTAG+AGG + chr3_4:43816515-43816534 Msa0501940:CDS 40.0%
GTTGTTTATGATGTTGGTGC+TGG + chr3_4:43816537-43816556 Msa0501940:CDS 40.0%
!! ATGTTGGTGCTGGTAAGATT+GGG + chr3_4:43816547-43816566 Msa0501940:CDS 40.0%
! TATGCTTTGGGCTAAGTTAG+GGG + chr3_4:43816769-43816788 Msa0501940:three_prime_UTR 40.0%
! AAAGAAAACTTGATTGGCCC+CGG + chr3_4:43816792-43816811 Msa0501940:three_prime_UTR 40.0%
ACTGTGTGTTATATAGGGAG+TGG + chr3_4:43816902-43816921 Msa0501940:three_prime_UTR 40.0%
AGTGGTTGAAGATGACTTTG+TGG + chr3_4:43816920-43816939 Msa0501940:three_prime_UTR 40.0%
GTGGTTGAAGATGACTTTGT+GGG + chr3_4:43816921-43816940 Msa0501940:three_prime_UTR 40.0%
ATAAGGCTACCAGATTTGGC+TGG - chr3_4:43815198-43815217 None:intergenic 45.0%
!! GCCAAATCTGGTAGCCTTAT+TGG + chr3_4:43815198-43815217 Msa0501940:CDS 45.0%
!! TCTGGTAGCCTTATTGGATC+AGG + chr3_4:43815204-43815223 Msa0501940:CDS 45.0%
!! CTGGTAGCCTTATTGGATCA+GGG + chr3_4:43815205-43815224 Msa0501940:CDS 45.0%
! AGGGCTTGGTACTCCTAAAA+AGG + chr3_4:43815245-43815264 Msa0501940:CDS 45.0%
! ACACTGGTAGTGATCTCACT+TGG + chr3_4:43815286-43815305 Msa0501940:CDS 45.0%
TTGATACTTTAGCACAGCGG+GGG - chr3_4:43815777-43815796 None:intergenic 45.0%
GCATTACTGTTAGCCGTTCT+CGG - chr3_4:43815858-43815877 None:intergenic 45.0%
ACGGCTAACAGTAATGCCAA+CGG + chr3_4:43815861-43815880 Msa0501940:CDS 45.0%
AAACCATCAATGGCATCCGT+TGG - chr3_4:43815880-43815899 None:intergenic 45.0%
CAAATAGGCCTTCGTTGTCT+TGG - chr3_4:43815918-43815937 None:intergenic 45.0%
CAAGACAACGAAGGCCTATT+TGG + chr3_4:43815916-43815935 Msa0501940:CDS 45.0%
ATGAGATTGGATGACGACCA+AGG - chr3_4:43815963-43815982 None:intergenic 45.0%
TGTCTTCCATCCACATCTAG+TGG + chr3_4:43816027-43816046 Msa0501940:CDS 45.0%
AGAGGATGAGATTGGAAGCT+TGG - chr3_4:43816175-43816194 None:intergenic 45.0%
AGAGTCAATAATGGCACCAC+CGG - chr3_4:43816208-43816227 None:intergenic 45.0%
CTTTCTTGAAGGAATCTCGG+AGG - chr3_4:43816272-43816291 None:intergenic 45.0%
CTCCGAGATTCCTTCAAGAA+AGG + chr3_4:43816270-43816289 Msa0501940:CDS 45.0%
CTTCGTCATGCCTTTCTTGA+AGG - chr3_4:43816283-43816302 None:intergenic 45.0%
! TGTTTGGCGTTTTCGCCAAA+TGG + chr3_4:43816462-43816481 Msa0501940:CDS 45.0%
!! GATGTTGGTGCTGGTAAGAT+TGG + chr3_4:43816546-43816565 Msa0501940:CDS 45.0%
GAAGATGACTTTGTGGGCAA+TGG + chr3_4:43816927-43816946 Msa0501940:three_prime_UTR 45.0%
CTTTGTGGGCAATGGTGATA+AGG + chr3_4:43816935-43816954 Msa0501940:three_prime_UTR 45.0%
ATAAGGCTACCAGATTTGGC+TGG - chr3_4:43815198-43815217 None:intergenic 45.0%
!! GCCAAATCTGGTAGCCTTAT+TGG + chr3_4:43815198-43815217 Msa0501940:CDS 45.0%
!! TCTGGTAGCCTTATTGGATC+AGG + chr3_4:43815204-43815223 Msa0501940:CDS 45.0%
!! CTGGTAGCCTTATTGGATCA+GGG + chr3_4:43815205-43815224 Msa0501940:CDS 45.0%
! AGGGCTTGGTACTCCTAAAA+AGG + chr3_4:43815245-43815264 Msa0501940:CDS 45.0%
! ACACTGGTAGTGATCTCACT+TGG + chr3_4:43815286-43815305 Msa0501940:CDS 45.0%
TTGATACTTTAGCACAGCGG+GGG - chr3_4:43815777-43815796 None:intergenic 45.0%
GCATTACTGTTAGCCGTTCT+CGG - chr3_4:43815858-43815877 None:intergenic 45.0%
ACGGCTAACAGTAATGCCAA+CGG + chr3_4:43815861-43815880 Msa0501940:CDS 45.0%
AAACCATCAATGGCATCCGT+TGG - chr3_4:43815880-43815899 None:intergenic 45.0%
CAAATAGGCCTTCGTTGTCT+TGG - chr3_4:43815918-43815937 None:intergenic 45.0%
CAAGACAACGAAGGCCTATT+TGG + chr3_4:43815916-43815935 Msa0501940:CDS 45.0%
ATGAGATTGGATGACGACCA+AGG - chr3_4:43815963-43815982 None:intergenic 45.0%
TGTCTTCCATCCACATCTAG+TGG + chr3_4:43816027-43816046 Msa0501940:CDS 45.0%
AGAGGATGAGATTGGAAGCT+TGG - chr3_4:43816175-43816194 None:intergenic 45.0%
AGAGTCAATAATGGCACCAC+CGG - chr3_4:43816208-43816227 None:intergenic 45.0%
CTTTCTTGAAGGAATCTCGG+AGG - chr3_4:43816272-43816291 None:intergenic 45.0%
CTCCGAGATTCCTTCAAGAA+AGG + chr3_4:43816270-43816289 Msa0501940:CDS 45.0%
CTTCGTCATGCCTTTCTTGA+AGG - chr3_4:43816283-43816302 None:intergenic 45.0%
! TGTTTGGCGTTTTCGCCAAA+TGG + chr3_4:43816462-43816481 Msa0501940:CDS 45.0%
!! GATGTTGGTGCTGGTAAGAT+TGG + chr3_4:43816546-43816565 Msa0501940:CDS 45.0%
GAAGATGACTTTGTGGGCAA+TGG + chr3_4:43816927-43816946 Msa0501940:three_prime_UTR 45.0%
CTTTGTGGGCAATGGTGATA+AGG + chr3_4:43816935-43816954 Msa0501940:three_prime_UTR 45.0%
GCTAACCTACCAGCCAAATC+TGG + chr3_4:43815186-43815205 Msa0501940:CDS 50.0%
ACTCAGCTCTCTTCAGCTAC+AGG + chr3_4:43815417-43815436 Msa0501940:CDS 50.0%
AGTATCCGACCGAGAAGGAT+TGG - chr3_4:43815831-43815850 None:intergenic 50.0%
TCGGATACTTCAGCCGAGAA+CGG + chr3_4:43815842-43815861 Msa0501940:CDS 50.0%
ATGCCAACGGATGCCATTGA+TGG + chr3_4:43815874-43815893 Msa0501940:CDS 50.0%
GACAACGAAGGCCTATTTGG+CGG + chr3_4:43815919-43815938 Msa0501940:CDS 50.0%
ACGACCAAGGCCTAATAGAC+CGG - chr3_4:43815950-43815969 None:intergenic 50.0%
TCCCGGGGAAATTCCTTCTA+CGG + chr3_4:43816117-43816136 Msa0501940:CDS 50.0%
TTCTACGGCCTTGACATTGC+CGG + chr3_4:43816132-43816151 Msa0501940:CDS 50.0%
! TCCTCTATTTTCTCCTCCGG+TGG + chr3_4:43816189-43816208 Msa0501940:CDS 50.0%
ACCACCGGAGGAGAAAATAG+AGG - chr3_4:43816193-43816212 None:intergenic 50.0%
!! GGTGGTGCCATTATTGACTC+TGG + chr3_4:43816207-43816226 Msa0501940:CDS 50.0%
! GAAGTATCCAGTTGCTCCAG+CGG + chr3_4:43816299-43816318 Msa0501940:CDS 50.0%
ATTGAAACCGCTGGAGCAAC+TGG - chr3_4:43816309-43816328 None:intergenic 50.0%
!! GGTGCTGGTAAGATTGGGTT+TGG + chr3_4:43816552-43816571 Msa0501940:CDS 50.0%
GCTAACCTACCAGCCAAATC+TGG + chr3_4:43815186-43815205 Msa0501940:CDS 50.0%
ACTCAGCTCTCTTCAGCTAC+AGG + chr3_4:43815417-43815436 Msa0501940:CDS 50.0%
AGTATCCGACCGAGAAGGAT+TGG - chr3_4:43815831-43815850 None:intergenic 50.0%
TCGGATACTTCAGCCGAGAA+CGG + chr3_4:43815842-43815861 Msa0501940:CDS 50.0%
ATGCCAACGGATGCCATTGA+TGG + chr3_4:43815874-43815893 Msa0501940:CDS 50.0%
GACAACGAAGGCCTATTTGG+CGG + chr3_4:43815919-43815938 Msa0501940:CDS 50.0%
ACGACCAAGGCCTAATAGAC+CGG - chr3_4:43815950-43815969 None:intergenic 50.0%
TCCCGGGGAAATTCCTTCTA+CGG + chr3_4:43816117-43816136 Msa0501940:CDS 50.0%
TTCTACGGCCTTGACATTGC+CGG + chr3_4:43816132-43816151 Msa0501940:CDS 50.0%
! TCCTCTATTTTCTCCTCCGG+TGG + chr3_4:43816189-43816208 Msa0501940:CDS 50.0%
ACCACCGGAGGAGAAAATAG+AGG - chr3_4:43816193-43816212 None:intergenic 50.0%
!! GGTGGTGCCATTATTGACTC+TGG + chr3_4:43816207-43816226 Msa0501940:CDS 50.0%
! GAAGTATCCAGTTGCTCCAG+CGG + chr3_4:43816299-43816318 Msa0501940:CDS 50.0%
ATTGAAACCGCTGGAGCAAC+TGG - chr3_4:43816309-43816328 None:intergenic 50.0%
!! GGTGCTGGTAAGATTGGGTT+TGG + chr3_4:43816552-43816571 Msa0501940:CDS 50.0%
GGCTACCAGATTTGGCTGGT+AGG - chr3_4:43815194-43815213 None:intergenic 55.0%
GCACGGATATGGACACGACA+CGG + chr3_4:43815460-43815479 Msa0501940:intron 55.0%
GGTGACCAATCCTTCTCGGT+CGG + chr3_4:43815823-43815842 Msa0501940:CDS 55.0%
! GCTGAAGTATCCGACCGAGA+AGG - chr3_4:43815836-43815855 None:intergenic 55.0%
TCAGCCGGTCTATTAGGCCT+TGG + chr3_4:43815943-43815962 Msa0501940:CDS 55.0%
CCAACGCCACTAGATGTGGA+TGG - chr3_4:43816036-43816055 None:intergenic 55.0%
CCATCCACATCTAGTGGCGT+TGG + chr3_4:43816033-43816052 Msa0501940:CDS 55.0%
!! TATCGGAGGCGCCAAATGTG+AGG - chr3_4:43816062-43816081 None:intergenic 55.0%
GCCGTAGAAGGAATTTCCCC+GGG - chr3_4:43816121-43816140 None:intergenic 55.0%
GGCCGTAGAAGGAATTTCCC+CGG - chr3_4:43816122-43816141 None:intergenic 55.0%
GGCAATGTCAAGGCCGTAGA+AGG - chr3_4:43816133-43816152 None:intergenic 55.0%
!! CGCTGATTCCGGCAATGTCA+AGG - chr3_4:43816143-43816162 None:intergenic 55.0%
GACATTGCCGGAATCAGCGT+TGG + chr3_4:43816144-43816163 Msa0501940:CDS 55.0%
! ATTGCCGGAATCAGCGTTGG+TGG + chr3_4:43816147-43816166 Msa0501940:CDS 55.0%
!! GGTTCCACCAACGCTGATTC+CGG - chr3_4:43816154-43816173 None:intergenic 55.0%
GTCAATAATGGCACCACCGG+AGG - chr3_4:43816205-43816224 None:intergenic 55.0%
CGGAGGCAGCCGTGTAATAA+CGG - chr3_4:43816235-43816254 None:intergenic 55.0%
ATCTCGGAGGCTAGCATAGG+CGG - chr3_4:43816259-43816278 None:intergenic 55.0%
GGAATCTCGGAGGCTAGCAT+AGG - chr3_4:43816262-43816281 None:intergenic 55.0%
! TTTCCTCGGTGGTGGTGTCA+CGG + chr3_4:43816389-43816408 Msa0501940:CDS 55.0%
! CACGTAAAGTATCCCTGGCG+CGG - chr3_4:43816424-43816443 None:intergenic 55.0%
! CTCGCCACGTAAAGTATCCC+TGG - chr3_4:43816429-43816448 None:intergenic 55.0%
GGCTACCAGATTTGGCTGGT+AGG - chr3_4:43815194-43815213 None:intergenic 55.0%
GCACGGATATGGACACGACA+CGG + chr3_4:43815460-43815479 Msa0501940:intron 55.0%
GGTGACCAATCCTTCTCGGT+CGG + chr3_4:43815823-43815842 Msa0501940:CDS 55.0%
! GCTGAAGTATCCGACCGAGA+AGG - chr3_4:43815836-43815855 None:intergenic 55.0%
TCAGCCGGTCTATTAGGCCT+TGG + chr3_4:43815943-43815962 Msa0501940:CDS 55.0%
CCAACGCCACTAGATGTGGA+TGG - chr3_4:43816036-43816055 None:intergenic 55.0%
CCATCCACATCTAGTGGCGT+TGG + chr3_4:43816033-43816052 Msa0501940:CDS 55.0%
!! TATCGGAGGCGCCAAATGTG+AGG - chr3_4:43816062-43816081 None:intergenic 55.0%
GCCGTAGAAGGAATTTCCCC+GGG - chr3_4:43816121-43816140 None:intergenic 55.0%
GGCCGTAGAAGGAATTTCCC+CGG - chr3_4:43816122-43816141 None:intergenic 55.0%
GGCAATGTCAAGGCCGTAGA+AGG - chr3_4:43816133-43816152 None:intergenic 55.0%
!! CGCTGATTCCGGCAATGTCA+AGG - chr3_4:43816143-43816162 None:intergenic 55.0%
GACATTGCCGGAATCAGCGT+TGG + chr3_4:43816144-43816163 Msa0501940:CDS 55.0%
! ATTGCCGGAATCAGCGTTGG+TGG + chr3_4:43816147-43816166 Msa0501940:CDS 55.0%
!! GGTTCCACCAACGCTGATTC+CGG - chr3_4:43816154-43816173 None:intergenic 55.0%
GTCAATAATGGCACCACCGG+AGG - chr3_4:43816205-43816224 None:intergenic 55.0%
CGGAGGCAGCCGTGTAATAA+CGG - chr3_4:43816235-43816254 None:intergenic 55.0%
ATCTCGGAGGCTAGCATAGG+CGG - chr3_4:43816259-43816278 None:intergenic 55.0%
GGAATCTCGGAGGCTAGCAT+AGG - chr3_4:43816262-43816281 None:intergenic 55.0%
! TTTCCTCGGTGGTGGTGTCA+CGG + chr3_4:43816389-43816408 Msa0501940:CDS 55.0%
! CACGTAAAGTATCCCTGGCG+CGG - chr3_4:43816424-43816443 None:intergenic 55.0%
! CTCGCCACGTAAAGTATCCC+TGG - chr3_4:43816429-43816448 None:intergenic 55.0%
GGTTGCGGCCAAGACAACGA+AGG + chr3_4:43815907-43815926 Msa0501940:CDS 60.0%
GTGGCCAACGCCACTAGATG+TGG - chr3_4:43816040-43816059 None:intergenic 60.0%
!! GGCGTTGGCCACCTCACATT+TGG + chr3_4:43816048-43816067 Msa0501940:CDS 60.0%
! CTCCCTTTTCCACGGTCTCC+CGG + chr3_4:43816100-43816119 Msa0501940:CDS 60.0%
! TCCCTTTTCCACGGTCTCCC+GGG + chr3_4:43816101-43816120 Msa0501940:CDS 60.0%
CGCGCCAGGGATACTTTACG+TGG + chr3_4:43816422-43816441 Msa0501940:CDS 60.0%
GGTTGCGGCCAAGACAACGA+AGG + chr3_4:43815907-43815926 Msa0501940:CDS 60.0%
GTGGCCAACGCCACTAGATG+TGG - chr3_4:43816040-43816059 None:intergenic 60.0%
!! GGCGTTGGCCACCTCACATT+TGG + chr3_4:43816048-43816067 Msa0501940:CDS 60.0%
! CTCCCTTTTCCACGGTCTCC+CGG + chr3_4:43816100-43816119 Msa0501940:CDS 60.0%
! TCCCTTTTCCACGGTCTCCC+GGG + chr3_4:43816101-43816120 Msa0501940:CDS 60.0%
CGCGCCAGGGATACTTTACG+TGG + chr3_4:43816422-43816441 Msa0501940:CDS 60.0%
GGCCTATTTGGCGGCTCAGC+CGG + chr3_4:43815928-43815947 Msa0501940:CDS 65.0%
GACCGGCTGAGCCGCCAAAT+AGG - chr3_4:43815933-43815952 None:intergenic 65.0%
GGCGGCTCAGCCGGTCTATT+AGG + chr3_4:43815937-43815956 Msa0501940:CDS 65.0%
!! CGGAGGCGCCAAATGTGAGG+TGG - chr3_4:43816059-43816078 None:intergenic 65.0%
CCCCGGGAGACCGTGGAAAA+GGG - chr3_4:43816105-43816124 None:intergenic 65.0%
! CCCTTTTCCACGGTCTCCCG+GGG + chr3_4:43816102-43816121 Msa0501940:CDS 65.0%
TCCCCGGGAGACCGTGGAAA+AGG - chr3_4:43816106-43816125 None:intergenic 65.0%
GGAATTTCCCCGGGAGACCG+TGG - chr3_4:43816112-43816131 None:intergenic 65.0%
AGGCTAGCATAGGCGGTCGG+AGG - chr3_4:43816252-43816271 None:intergenic 65.0%
CGGAGGCTAGCATAGGCGGT+CGG - chr3_4:43816255-43816274 None:intergenic 65.0%
ACGGTGGAAATAGCCGCGCC+AGG + chr3_4:43816408-43816427 Msa0501940:CDS 65.0%
CGGTGGAAATAGCCGCGCCA+GGG + chr3_4:43816409-43816428 Msa0501940:CDS 65.0%
GGCCTATTTGGCGGCTCAGC+CGG + chr3_4:43815928-43815947 Msa0501940:CDS 65.0%
GACCGGCTGAGCCGCCAAAT+AGG - chr3_4:43815933-43815952 None:intergenic 65.0%
GGCGGCTCAGCCGGTCTATT+AGG + chr3_4:43815937-43815956 Msa0501940:CDS 65.0%
!! CGGAGGCGCCAAATGTGAGG+TGG - chr3_4:43816059-43816078 None:intergenic 65.0%
CCCCGGGAGACCGTGGAAAA+GGG - chr3_4:43816105-43816124 None:intergenic 65.0%
! CCCTTTTCCACGGTCTCCCG+GGG + chr3_4:43816102-43816121 Msa0501940:CDS 65.0%
TCCCCGGGAGACCGTGGAAA+AGG - chr3_4:43816106-43816125 None:intergenic 65.0%
GGAATTTCCCCGGGAGACCG+TGG - chr3_4:43816112-43816131 None:intergenic 65.0%
AGGCTAGCATAGGCGGTCGG+AGG - chr3_4:43816252-43816271 None:intergenic 65.0%
CGGAGGCTAGCATAGGCGGT+CGG - chr3_4:43816255-43816274 None:intergenic 65.0%
ACGGTGGAAATAGCCGCGCC+AGG + chr3_4:43816408-43816427 Msa0501940:CDS 65.0%
CGGTGGAAATAGCCGCGCCA+GGG + chr3_4:43816409-43816428 Msa0501940:CDS 65.0%
CCACCGTGACACCACCACCG+AGG - chr3_4:43816395-43816414 None:intergenic 70.0%
!! CCTCGGTGGTGGTGTCACGG+TGG + chr3_4:43816392-43816411 Msa0501940:CDS 70.0%
CCACCGTGACACCACCACCG+AGG - chr3_4:43816395-43816414 None:intergenic 70.0%
!! CCTCGGTGGTGGTGTCACGG+TGG + chr3_4:43816392-43816411 Msa0501940:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 43814927 43817114 43814927 ID=Msa0501940;Name=Msa0501940
chr3_4 mRNA 43814927 43817114 43814927 ID=Msa0501940-mRNA-1;Parent=Msa0501940;Name=Msa0501940-mRNA-1;_AED=0.04;_eAED=0.04;_QI=10|1|1|1|1|1|2|521|442
chr3_4 exon 43814927 43815438 43814927 ID=Msa0501940-mRNA-1:exon:9294;Parent=Msa0501940-mRNA-1
chr3_4 exon 43815767 43817114 43815767 ID=Msa0501940-mRNA-1:exon:9295;Parent=Msa0501940-mRNA-1
chr3_4 five_prime_UTR 43814927 43814936 43814927 ID=Msa0501940-mRNA-1:five_prime_utr;Parent=Msa0501940-mRNA-1
chr3_4 CDS 43814937 43815438 43814937 ID=Msa0501940-mRNA-1:cds;Parent=Msa0501940-mRNA-1
chr3_4 CDS 43815767 43816593 43815767 ID=Msa0501940-mRNA-1:cds;Parent=Msa0501940-mRNA-1
chr3_4 three_prime_UTR 43816594 43817114 43816594 ID=Msa0501940-mRNA-1:three_prime_utr;Parent=Msa0501940-mRNA-1
Gene Sequence

>Msa0501940

ATGTTTCATTGTTCAAATTCAGGTTCCAAAACAAAAGCATCATTAGATGTGTTACACAAACATGGGCCATGTTCCCAACTGAATAATGGAAAAGCAAAAATTCTTCCAACACACAGTGATATTCTTGATCATGACAAAGAAAGGGTGAATTATATTCACTCCAAATTATTATCATCTAAGAATAATATTAATTTGGAGGGATTTATGGATTCTAAATCTAAATCTAAATCAATTAAATCACGTAAATCAGCTAACCTACCAGCCAAATCTGGTAGCCTTATTGGATCAGGGAACTATTTTGTTGTTGTAGGGCTTGGTACTCCTAAAAAGGATTTGTCACTTATTTTTGACACTGGTAGTGATCTCACTTGGACTCAATGTCAACCTTGTGTTGGTTCTTGCTACAAGCAACAAGATGAAATTTTTGATCCATCAAAGTCTACTTCCTATTACAATATCACTTGCACTTCTTCAGATTGCACTCAGCTCTCTTCAGCTACAGGAAGTGACCCCCGCTGTGCTAAAGTATCAAATGCATGTGTATATGGCATCCAATATGGTGACCAATCCTTCTCGGTCGGATACTTCAGCCGAGAACGGCTAACAGTAATGCCAACGGATGCCATTGATGGTTTTTTATTTGGTTGCGGCCAAGACAACGAAGGCCTATTTGGCGGCTCAGCCGGTCTATTAGGCCTTGGTCGTCATCCAATCTCATTCGTCCAACAAACATCTCAAAAATACCAAAAAACTTTCTCTTATTGTCTTCCATCCACATCTAGTGGCGTTGGCCACCTCACATTTGGCGCCTCCGATAATAAGTATGTAAAATACACTCCCTTTTCCACGGTCTCCCGGGGAAATTCCTTCTACGGCCTTGACATTGCCGGAATCAGCGTTGGTGGAACCAAGCTTCCAATCTCATCCTCTATTTTCTCCTCCGGTGGTGCCATTATTGACTCTGGTACCGTTATTACACGGCTGCCTCCGACCGCCTATGCTAGCCTCCGAGATTCCTTCAAGAAAGGCATGACGAAGTATCCAGTTGCTCCAGCGGTTTCAATTTTAGACACATGCTATGATCTTAGCGGGTACAAGATTGTTTCCATTCCGAAGATTAGTTTTTTCCTCGGTGGTGGTGTCACGGTGGAAATAGCCGCGCCAGGGATACTTTACGTGGCGAGTTTGAAGCAAGCTTGTTTGGCGTTTTCGCCAAATGGAGATGATAGTGATATTACTATCTTTGGGAATGTGCAACAAAGAACACTAGAGGTTGTTTATGATGTTGGTGCTGGTAAGATTGGGTTTGGATCAAATGGTTGCGAGTGA
Protein sequence

>Msa0501940

MFHCSNSGSKTKASLDVLHKHGPCSQLNNGKAKILPTHSDILDHDKERVNYIHSKLLSSKNNINLEGFMDSKSKSKSIKSRKSANLPAKSGSLIGSGNYFVVVGLGTPKKDLSLIFDTGSDLTWTQCQPCVGSCYKQQDEIFDPSKSTSYYNITCTSSDCTQLSSATGSDPRCAKVSNACVYGIQYGDQSFSVGYFSRERLTVMPTDAIDGFLFGCGQDNEGLFGGSAGLLGLGRHPISFVQQTSQKYQKTFSYCLPSTSSGVGHLTFGASDNKYVKYTPFSTVSRGNSFYGLDIAGISVGGTKLPISSSIFSSGGAIIDSGTVITRLPPTAYASLRDSFKKGMTKYPVAPAVSILDTCYDLSGYKIVSIPKISFFLGGGVTVEIAAPGILYVASLKQACLAFSPNGDDSDITIFGNVQQRTLEVVYDVGAGKIGFGSNGCE*