Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0364200 | XP_003600432.1 | 88.822 | 331 | 12 | 2 | 7 | 337 | 25 | 330 | 0.0 | 585 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0364200 | sp|Q680K8|Y1576_ARATH | 63.030 | 330 | 93 | 6 | 9 | 337 | 28 | 329 | 1.04e-141 | 407 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0364200 | G7IY69 | 88.822 | 331 | 12 | 2 | 7 | 337 | 25 | 330 | 0.0 | 585 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0364200 | TR | TRAF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0364200 | Msa0411660 | 0.979857 | 6.722791e-149 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0364200 | MtrunA17_Chr3g0103031 | 88.822 | 331 | 12 | 2 | 7 | 337 | 25 | 330 | 0.0 | 585 |
| Msa0364200 | MtrunA17_Chr5g0447111 | 58.654 | 312 | 103 | 4 | 25 | 335 | 43 | 329 | 3.38e-120 | 349 |
| Msa0364200 | MtrunA17_Chr1g0159831 | 44.277 | 332 | 158 | 4 | 7 | 335 | 23 | 330 | 8.17e-94 | 282 |
| Msa0364200 | MtrunA17_Chr3g0124921 | 45.260 | 327 | 150 | 6 | 7 | 331 | 22 | 321 | 2.89e-90 | 273 |
| Msa0364200 | MtrunA17_Chr5g0447191 | 56.111 | 180 | 77 | 1 | 154 | 331 | 8 | 187 | 7.81e-59 | 187 |
| Msa0364200 | MtrunA17_Chr4g0029841 | 33.175 | 211 | 136 | 2 | 119 | 329 | 71 | 276 | 2.66e-30 | 116 |
| Msa0364200 | MtrunA17_Chr3g0114411 | 30.108 | 186 | 122 | 4 | 141 | 318 | 66 | 251 | 1.15e-11 | 64.3 |
| Msa0364200 | MtrunA17_Chr7g0259501 | 27.815 | 151 | 94 | 3 | 162 | 299 | 197 | 345 | 1.36e-11 | 65.1 |
| Msa0364200 | MtrunA17_Chr1g0185861 | 28.289 | 152 | 94 | 3 | 162 | 300 | 201 | 350 | 1.39e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0364200 | AT1G55760.1 | 63.030 | 330 | 93 | 6 | 9 | 337 | 28 | 329 | 1.06e-142 | 407 |
| Msa0364200 | AT1G21780.2 | 44.985 | 329 | 154 | 4 | 7 | 335 | 23 | 324 | 4.52e-96 | 288 |
| Msa0364200 | AT1G21780.1 | 44.985 | 329 | 154 | 4 | 7 | 335 | 23 | 324 | 4.52e-96 | 288 |
| Msa0364200 | AT1G01640.1 | 30.366 | 191 | 128 | 4 | 149 | 336 | 1 | 189 | 1.21e-15 | 75.1 |
| Msa0364200 | AT1G01640.2 | 30.588 | 170 | 113 | 4 | 170 | 336 | 1 | 168 | 4.20e-13 | 67.4 |
| Msa0364200 | AT3G03740.1 | 31.959 | 194 | 114 | 5 | 156 | 333 | 199 | 390 | 1.43e-12 | 68.6 |
| Msa0364200 | AT3G56230.1 | 29.651 | 172 | 116 | 4 | 159 | 326 | 98 | 268 | 2.85e-12 | 66.6 |
| Msa0364200 | AT2G40450.1 | 32.540 | 126 | 74 | 4 | 153 | 267 | 4 | 129 | 1.04e-11 | 63.9 |
| Msa0364200 | AT2G39760.2 | 27.703 | 148 | 96 | 1 | 162 | 298 | 184 | 331 | 9.36e-11 | 62.8 |
Find 72 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCCAATATCTTGTTAAATT+TGG | 0.145528 | 3_1:+56958009 | Msa0364200:CDS |
| CTTGTAACATTGGATATTTC+AGG | 0.153912 | 3_1:-56956278 | None:intergenic |
| CGACATGTCTGTGATGTTTA+TGG | 0.202175 | 3_1:-56957761 | None:intergenic |
| TTGGTAAAATATTTGAAATT+CGG | 0.228336 | 3_1:+56958028 | Msa0364200:CDS |
| TGGTAAAATATTTGAAATTC+GGG | 0.243014 | 3_1:+56958029 | Msa0364200:CDS |
| ATCTCATCGCTGAAGTCTTT+GGG | 0.249673 | 3_1:+56958088 | Msa0364200:CDS |
| TACCAAATTTAACAAGATAT+TGG | 0.261967 | 3_1:-56958011 | None:intergenic |
| TGAGATCCCTGTCTGCATTT+TGG | 0.269401 | 3_1:-56958071 | None:intergenic |
| GATCTCATCGCTGAAGTCTT+TGG | 0.302318 | 3_1:+56958087 | Msa0364200:CDS |
| GAAGTCTTTGGGGAAGTTCT+TGG | 0.305595 | 3_1:+56958099 | Msa0364200:CDS |
| TTCCTTGATTTGAAGATTGC+AGG | 0.320978 | 3_1:+56956762 | Msa0364200:CDS |
| TTGGGGAAGTTCTTGGTGCC+TGG | 0.360323 | 3_1:+56958106 | Msa0364200:CDS |
| TTCAAAATGCATCACTATAT+CGG | 0.365062 | 3_1:+56957962 | Msa0364200:CDS |
| AGATCTTCAATATCCTTTCC+AGG | 0.389226 | 3_1:-56958124 | None:intergenic |
| TCAATTGAAGTTCCACTGTC+TGG | 0.398323 | 3_1:+56956717 | Msa0364200:CDS |
| GATCGTGTGAAAACATGCTT+TGG | 0.410502 | 3_1:-56957717 | None:intergenic |
| AAATCCTTCACCACCCCATA+TGG | 0.411517 | 3_1:-56957551 | None:intergenic |
| GTGGAGAACCTTGCTCCATA+TGG | 0.412309 | 3_1:+56957536 | Msa0364200:CDS |
| AGTCAACAACCTGGGAAAGC+CGG | 0.460730 | 3_1:+56955607 | Msa0364200:CDS |
| AGGATTATCTCTTGTAACAT+TGG | 0.466890 | 3_1:-56956288 | None:intergenic |
| TGGAGAACCTTGCTCCATAT+GGG | 0.474713 | 3_1:+56957537 | Msa0364200:CDS |
| CGAAAAGCTCTCACACATCC+AGG | 0.477842 | 3_1:+56956359 | Msa0364200:CDS |
| GTCAACAACCTGGGAAAGCC+GGG | 0.479947 | 3_1:+56955608 | Msa0364200:CDS |
| CATGTCGATTGAAGTATGTC+AGG | 0.482314 | 3_1:+56957777 | Msa0364200:CDS |
| AGTCGGAATCCTGTGCGTTC+AGG | 0.483131 | 3_1:+56957192 | Msa0364200:intron |
| GCTAAAGCCCTAGGGTCTCT+TGG | 0.484662 | 3_1:+56957592 | Msa0364200:CDS |
| AAAACTCTCCCGGCTTTCCC+AGG | 0.488012 | 3_1:-56955616 | None:intergenic |
| GCTTTGGAAGACAGGTGAAC+GGG | 0.489275 | 3_1:-56957701 | None:intergenic |
| TTATTTGAATTTGTTGTGAA+AGG | 0.491559 | 3_1:+56958202 | Msa0364200:three_prime_UTR |
| TGCTCCATATGGGGTGGTGA+AGG | 0.497886 | 3_1:+56957547 | Msa0364200:CDS |
| GGCCTGCAATCTTCAAATCA+AGG | 0.500364 | 3_1:-56956764 | None:intergenic |
| AATGCTTCGGATGGAAGTAT+AGG | 0.510954 | 3_1:+56957655 | Msa0364200:CDS |
| AGATCGAACGCTAAAGCCCT+AGG | 0.516349 | 3_1:+56957583 | Msa0364200:CDS |
| AGACATCACAATCAATGCTT+CGG | 0.520138 | 3_1:+56957642 | Msa0364200:CDS |
| TGAAGATCTTGCAACTTCAA+AGG | 0.527121 | 3_1:+56958138 | Msa0364200:exon |
| TGTTCCTCCAAAATGCAGAC+AGG | 0.530833 | 3_1:+56958064 | Msa0364200:CDS |
| GCATTCTACCAAGAGACCCT+AGG | 0.531172 | 3_1:-56957600 | None:intergenic |
| GAAGTTCTTGGTGCCTGGAA+AGG | 0.537759 | 3_1:+56958111 | Msa0364200:CDS |
| GAAAACATGCTTTGGAAGAC+AGG | 0.538730 | 3_1:-56957709 | None:intergenic |
| CGCATGATAAAAGAAGCAAT+TGG | 0.545571 | 3_1:-56956311 | None:intergenic |
| CGTGTCGTTAGTTCTGCTCA+TGG | 0.548473 | 3_1:+56956332 | Msa0364200:CDS |
| TGCAACTTCAAAGGACAAGA+AGG | 0.551453 | 3_1:+56958147 | Msa0364200:three_prime_UTR |
| TTCAGGACATCAGTGGATGT+TGG | 0.551858 | 3_1:+56957209 | Msa0364200:CDS |
| ATGAAGAATTTCTGACACAT+AGG | 0.551928 | 3_1:+56957833 | Msa0364200:CDS |
| CTTCAAAGGACAAGAAGGCT+CGG | 0.552850 | 3_1:+56958152 | Msa0364200:three_prime_UTR |
| ATGATAAAAGAAGCAATTGG+AGG | 0.567311 | 3_1:-56956308 | None:intergenic |
| ATCACAATCAATGCTTCGGA+TGG | 0.568005 | 3_1:+56957646 | Msa0364200:CDS |
| ATGAAGAGAAACGAGGATTG+TGG | 0.569942 | 3_1:+56955577 | Msa0364200:CDS |
| CATTCTACCAAGAGACCCTA+GGG | 0.576970 | 3_1:-56957599 | None:intergenic |
| GGAGAACCTTGCTCCATATG+GGG | 0.579524 | 3_1:+56957538 | Msa0364200:CDS |
| TATCTTCTAGAAGACTCTCA+TGG | 0.579860 | 3_1:-56957912 | None:intergenic |
| TTCTAGAAGACTCTCATGGA+TGG | 0.591651 | 3_1:-56957908 | None:intergenic |
| CTGTGCGTTCAGGACATCAG+TGG | 0.595435 | 3_1:+56957202 | Msa0364200:CDS |
| TCTCATCGCTGAAGTCTTTG+GGG | 0.603546 | 3_1:+56958089 | Msa0364200:CDS |
| GCATAACATATATATGTACA+AGG | 0.605577 | 3_1:-56958279 | None:intergenic |
| CACTGATGTCCTGAACGCAC+AGG | 0.608861 | 3_1:-56957201 | None:intergenic |
| GGGTGGTGAAGGATTTACTC+AGG | 0.609959 | 3_1:+56957558 | Msa0364200:CDS |
| TGTGAAATGAAGGTATTTGT+CGG | 0.609961 | 3_1:+56956220 | Msa0364200:intron |
| GGAAGAAAGAGTCAACAACC+TGG | 0.613447 | 3_1:+56955598 | Msa0364200:CDS |
| CTTGGTAGAATGCTAAGAGA+AGG | 0.615271 | 3_1:+56957610 | Msa0364200:CDS |
| TGCTTTGGAAGACAGGTGAA+CGG | 0.624572 | 3_1:-56957702 | None:intergenic |
| GATCGAACGCTAAAGCCCTA+GGG | 0.634497 | 3_1:+56957584 | Msa0364200:CDS |
| GTTCCTCCAAAATGCAGACA+GGG | 0.639389 | 3_1:+56958065 | Msa0364200:CDS |
| TCACCACCCCATATGGAGCA+AGG | 0.646739 | 3_1:-56957544 | None:intergenic |
| GAAGAAAGAGTCAACAACCT+GGG | 0.649051 | 3_1:+56955599 | Msa0364200:CDS |
| CGACATATCTGACTTGAGAG+AGG | 0.668882 | 3_1:+56957885 | Msa0364200:CDS |
| TTGTAAACAATACTACCTTG+TGG | 0.676663 | 3_1:-56958315 | None:intergenic |
| GAAATGAAGGTATTTGTCGG+TGG | 0.696589 | 3_1:+56956223 | Msa0364200:intron |
| GCTAGCGCTTCTGCATGCAG+CGG | 0.709404 | 3_1:+56957855 | Msa0364200:CDS |
| TTTGTCGGTGGAGAAACACA+AGG | 0.725214 | 3_1:+56956235 | Msa0364200:CDS |
| GAACCTTGCTCCATATGGGG+TGG | 0.727934 | 3_1:+56957541 | Msa0364200:CDS |
| GATTCATATGAAGAGAAACG+AGG | 0.748404 | 3_1:+56955570 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTATTATTGATTTTCTT+TGG | + | chr3_1:56956814-56956833 | Msa0364200:intron | 10.0% |
| !!! | GTTTTGTATATTATAAAGTT+TGG | + | chr3_1:56956119-56956138 | Msa0364200:intron | 15.0% |
| !!! | AATTTTCGATACATTATTAT+AGG | + | chr3_1:56957513-56957532 | Msa0364200:intron | 15.0% |
| !!! | ATTTTCGATACATTATTATA+GGG | + | chr3_1:56957514-56957533 | Msa0364200:intron | 15.0% |
| !!! | TTGGTAAAATATTTGAAATT+CGG | + | chr3_1:56958028-56958047 | Msa0364200:CDS | 15.0% |
| !!! | TGTTATTTCAATTTTTCTTG+TGG | + | chr3_1:56956410-56956429 | Msa0364200:intron | 20.0% |
| !! | CAAAACAAGAAATTAATCAA+CGG | - | chr3_1:56956642-56956661 | None:intergenic | 20.0% |
| !!! | AGTTTAGCTAAAATCAATTT+TGG | + | chr3_1:56956882-56956901 | Msa0364200:intron | 20.0% |
| !!! | GTTTAGCTAAAATCAATTTT+GGG | + | chr3_1:56956883-56956902 | Msa0364200:intron | 20.0% |
| !!! | TTTAGCTAAAATCAATTTTG+GGG | + | chr3_1:56956884-56956903 | Msa0364200:intron | 20.0% |
| !! | ATAGATTATCTTAATCAAAC+AGG | + | chr3_1:56957005-56957024 | Msa0364200:intron | 20.0% |
| !! | TAGATTATCTTAATCAAACA+GGG | + | chr3_1:56957006-56957025 | Msa0364200:intron | 20.0% |
| !!! | ATTGTTGATAAAGTTTGTTT+GGG | + | chr3_1:56957140-56957159 | Msa0364200:intron | 20.0% |
| !!! | ATTATAGCATTGATAATTGT+TGG | - | chr3_1:56957327-56957346 | None:intergenic | 20.0% |
| !! | ATCCAATATCTTGTTAAATT+TGG | + | chr3_1:56958009-56958028 | Msa0364200:CDS | 20.0% |
| !! | TACCAAATTTAACAAGATAT+TGG | - | chr3_1:56958014-56958033 | None:intergenic | 20.0% |
| !!! | TGGTAAAATATTTGAAATTC+GGG | + | chr3_1:56958029-56958048 | Msa0364200:CDS | 20.0% |
| !!! | TTATTTGAATTTGTTGTGAA+AGG | + | chr3_1:56958202-56958221 | Msa0364200:three_prime_UTR | 20.0% |
| ! | TTTAGCACATGTTTAGATTA+CGG | - | chr3_1:56956018-56956037 | None:intergenic | 25.0% |
| ! | AAACATGTGCTAAAAAAAAG+TGG | + | chr3_1:56956024-56956043 | Msa0364200:intron | 25.0% |
| ! | AACATGTGCTAAAAAAAAGT+GGG | + | chr3_1:56956025-56956044 | Msa0364200:intron | 25.0% |
| !!! | AAATCAGAATTTTGATTACC+TGG | - | chr3_1:56956380-56956399 | None:intergenic | 25.0% |
| !!! | CATGTAGTTTTTTATGTTGT+TGG | + | chr3_1:56956547-56956566 | Msa0364200:intron | 25.0% |
| ! | AAATTAATCAACGGAAGAAA+TGG | - | chr3_1:56956633-56956652 | None:intergenic | 25.0% |
| ! | TGCAAATGTTAATCATTTAG+AGG | + | chr3_1:56956844-56956863 | Msa0364200:intron | 25.0% |
| !! | TTAGCTAAAATCAATTTTGG+GGG | + | chr3_1:56956885-56956904 | Msa0364200:intron | 25.0% |
| ! | TATGCTCATGATAATAAAAG+TGG | - | chr3_1:56956931-56956950 | None:intergenic | 25.0% |
| ! | TAATCATTGTGATTCATCAT+TGG | - | chr3_1:56956979-56956998 | None:intergenic | 25.0% |
| ! | AGATTATCTTAATCAAACAG+GGG | + | chr3_1:56957007-56957026 | Msa0364200:intron | 25.0% |
| ! | AGATTTAACTAATTAACCCT+TGG | - | chr3_1:56957084-56957103 | None:intergenic | 25.0% |
| !! | CATTGTTGATAAAGTTTGTT+TGG | + | chr3_1:56957139-56957158 | Msa0364200:intron | 25.0% |
| !! | AGACAATTCAGATTTTAAAC+TGG | + | chr3_1:56957241-56957260 | Msa0364200:CDS | 25.0% |
| ! | GAAAATTAGCATTTCAAACA+AGG | - | chr3_1:56957500-56957519 | None:intergenic | 25.0% |
| !! | GCTTTTCTCAATTATCTTTA+CGG | + | chr3_1:56957799-56957818 | Msa0364200:CDS | 25.0% |
| !! | CTTTTCTCAATTATCTTTAC+GGG | + | chr3_1:56957800-56957819 | Msa0364200:CDS | 25.0% |
| ! | TTCAAAATGCATCACTATAT+CGG | + | chr3_1:56957962-56957981 | Msa0364200:CDS | 25.0% |
| ! | GCATAACATATATATGTACA+AGG | - | chr3_1:56958282-56958301 | None:intergenic | 25.0% |
| !! | GTTTTTGTTGGAAGGTATAT+TGG | + | chr3_1:56955634-56955653 | Msa0364200:intron | 30.0% |
| AAAGTGCAACTGATATTTCA+TGG | - | chr3_1:56955667-56955686 | None:intergenic | 30.0% | |
| ATCAGTCATTCTATTTGGAA+AGG | - | chr3_1:56955690-56955709 | None:intergenic | 30.0% | |
| AGAGAATCAGTCATTCTATT+TGG | - | chr3_1:56955695-56955714 | None:intergenic | 30.0% | |
| AAATCTGATCCTTTCAAGAT+TGG | + | chr3_1:56955785-56955804 | Msa0364200:intron | 30.0% | |
| !! | ACACACATCATTTTTAATGC+AGG | + | chr3_1:56955910-56955929 | Msa0364200:intron | 30.0% |
| GATCACAAAACATATGTACT+AGG | - | chr3_1:56955943-56955962 | None:intergenic | 30.0% | |
| ! | GTACATATGTTTTGTGATCA+CGG | + | chr3_1:56955944-56955963 | Msa0364200:intron | 30.0% |
| ACATGTGCTAAAAAAAAGTG+GGG | + | chr3_1:56956026-56956045 | Msa0364200:intron | 30.0% | |
| TCAAATCTATTTAGCCATGT+GGG | - | chr3_1:56956085-56956104 | None:intergenic | 30.0% | |
| TTCAAATCTATTTAGCCATG+TGG | - | chr3_1:56956086-56956105 | None:intergenic | 30.0% | |
| TCAAATCCAATTCCTCATAA+GGG | - | chr3_1:56956157-56956176 | None:intergenic | 30.0% | |
| !! | TTTTGTTGTGTGTGAAATGA+AGG | + | chr3_1:56956210-56956229 | Msa0364200:intron | 30.0% |
| !! | TGTGAAATGAAGGTATTTGT+CGG | + | chr3_1:56956220-56956239 | Msa0364200:intron | 30.0% |
| CTTGTAACATTGGATATTTC+AGG | - | chr3_1:56956281-56956300 | None:intergenic | 30.0% | |
| AGGATTATCTCTTGTAACAT+TGG | - | chr3_1:56956291-56956310 | None:intergenic | 30.0% | |
| ATGATAAAAGAAGCAATTGG+AGG | - | chr3_1:56956311-56956330 | None:intergenic | 30.0% | |
| ! | AGAGCAATGAAGATTTTGTT+TGG | + | chr3_1:56956694-56956713 | Msa0364200:CDS | 30.0% |
| AGTCTTAAGCATATACATCT+GGG | - | chr3_1:56956788-56956807 | None:intergenic | 30.0% | |
| AAGTCTTAAGCATATACATC+TGG | - | chr3_1:56956789-56956808 | None:intergenic | 30.0% | |
| GTTAATCATTTAGAGGCAAT+TGG | + | chr3_1:56956851-56956870 | Msa0364200:intron | 30.0% | |
| !! | TCAATTTTGGGGGTAATAAT+TGG | + | chr3_1:56956895-56956914 | Msa0364200:intron | 30.0% |
| ! | TCATTGGTGATTATGAACAA+AGG | - | chr3_1:56956963-56956982 | None:intergenic | 30.0% |
| ACAATGTCAGAGATTCAAAT+TGG | - | chr3_1:56957125-56957144 | None:intergenic | 30.0% | |
| CAAAATCCAGTTCATTTCTA+CGG | + | chr3_1:56957381-56957400 | Msa0364200:intron | 30.0% | |
| ATAATGATTCCCTCAAATCT+TGG | - | chr3_1:56957410-56957429 | None:intergenic | 30.0% | |
| TTCGATACATTATTATAGGG+TGG | + | chr3_1:56957517-56957536 | Msa0364200:intron | 30.0% | |
| ATGAAGAATTTCTGACACAT+AGG | + | chr3_1:56957833-56957852 | Msa0364200:CDS | 30.0% | |
| ATACGAAAAATGTACTTGAG+AGG | + | chr3_1:56957938-56957957 | Msa0364200:CDS | 30.0% | |
| TTGTAAACAATACTACCTTG+TGG | - | chr3_1:56958318-56958337 | None:intergenic | 30.0% | |
| TCAATGGAGAATCGATAACT+TGG | + | chr3_1:56955745-56955764 | Msa0364200:intron | 35.0% | |
| ATCCTTTCAAGATTGGTATC+TGG | + | chr3_1:56955792-56955811 | Msa0364200:intron | 35.0% | |
| TTCCAGATACCAATCTTGAA+AGG | - | chr3_1:56955797-56955816 | None:intergenic | 35.0% | |
| ! | TCAAGATTGGTATCTGGAAT+TGG | + | chr3_1:56955798-56955817 | Msa0364200:intron | 35.0% |
| AAAAAAAAGTGGGGTTGTGT+TGG | + | chr3_1:56956035-56956054 | Msa0364200:intron | 35.0% | |
| !!! | TTTTTTGCAAGACCCTTATG+AGG | + | chr3_1:56956142-56956161 | Msa0364200:intron | 35.0% |
| CTCAAATCCAATTCCTCATA+AGG | - | chr3_1:56956158-56956177 | None:intergenic | 35.0% | |
| CGCATGATAAAAGAAGCAAT+TGG | - | chr3_1:56956314-56956333 | None:intergenic | 35.0% | |
| TCTTGTGGATAGAGAACTAT+CGG | + | chr3_1:56956425-56956444 | Msa0364200:intron | 35.0% | |
| ! | ATGATGAATTTTCCAGACAG+TGG | - | chr3_1:56956732-56956751 | None:intergenic | 35.0% |
| ! | TTCCTTGATTTGAAGATTGC+AGG | + | chr3_1:56956762-56956781 | Msa0364200:CDS | 35.0% |
| TTATCTTAATCAAACAGGGG+AGG | + | chr3_1:56957010-56957029 | Msa0364200:intron | 35.0% | |
| TAAAATTAACCCTCAAGCCA+AGG | + | chr3_1:56957064-56957083 | Msa0364200:intron | 35.0% | |
| AAAATTAACCCTCAAGCCAA+GGG | + | chr3_1:56957065-56957084 | Msa0364200:intron | 35.0% | |
| ! | AAATCAGCATGTTTTCTGCA+CGG | + | chr3_1:56957289-56957308 | Msa0364200:intron | 35.0% |
| ! | CGTAGAAATGAACTGGATTT+TGG | - | chr3_1:56957383-56957402 | None:intergenic | 35.0% |
| AGACATCACAATCAATGCTT+CGG | + | chr3_1:56957642-56957661 | Msa0364200:CDS | 35.0% | |
| ! | TATCTTCTAGAAGACTCTCA+TGG | - | chr3_1:56957915-56957934 | None:intergenic | 35.0% |
| AGATCTTCAATATCCTTTCC+AGG | - | chr3_1:56958127-56958146 | None:intergenic | 35.0% | |
| TGAAGATCTTGCAACTTCAA+AGG | + | chr3_1:56958138-56958157 | Msa0364200:exon | 35.0% | |
| ! | GCTTTTCAGTATAAACCACA+AGG | + | chr3_1:56958300-56958319 | Msa0364200:three_prime_UTR | 35.0% |
| ATGAAGAGAAACGAGGATTG+TGG | + | chr3_1:56955577-56955596 | Msa0364200:CDS | 40.0% | |
| GAAGAAAGAGTCAACAACCT+GGG | + | chr3_1:56955599-56955618 | Msa0364200:CDS | 40.0% | |
| CGGTGAATTTGTCAGAATCA+CGG | - | chr3_1:56955998-56956017 | None:intergenic | 40.0% | |
| AAAAATTGAGACAGCCCACA+TGG | + | chr3_1:56956068-56956087 | Msa0364200:intron | 40.0% | |
| ! | ATTGGATTTGAGAGTGTGTG+TGG | + | chr3_1:56956166-56956185 | Msa0364200:intron | 40.0% |
| !! | GAAATGAAGGTATTTGTCGG+TGG | + | chr3_1:56956223-56956242 | Msa0364200:intron | 40.0% |
| TCAATTGAAGTTCCACTGTC+TGG | + | chr3_1:56956717-56956736 | Msa0364200:CDS | 40.0% | |
| ! | CTAATTAACCCTTGGCTTGA+GGG | - | chr3_1:56957076-56957095 | None:intergenic | 40.0% |
| ! | ACTAATTAACCCTTGGCTTG+AGG | - | chr3_1:56957077-56957096 | None:intergenic | 40.0% |
| CTTGGTAGAATGCTAAGAGA+AGG | + | chr3_1:56957610-56957629 | Msa0364200:CDS | 40.0% | |
| ATCACAATCAATGCTTCGGA+TGG | + | chr3_1:56957646-56957665 | Msa0364200:CDS | 40.0% | |
| ! | AATGCTTCGGATGGAAGTAT+AGG | + | chr3_1:56957655-56957674 | Msa0364200:CDS | 40.0% |
| !! | GAAAACATGCTTTGGAAGAC+AGG | - | chr3_1:56957712-56957731 | None:intergenic | 40.0% |
| GATCGTGTGAAAACATGCTT+TGG | - | chr3_1:56957720-56957739 | None:intergenic | 40.0% | |
| CGACATGTCTGTGATGTTTA+TGG | - | chr3_1:56957764-56957783 | None:intergenic | 40.0% | |
| ! | CATGTCGATTGAAGTATGTC+AGG | + | chr3_1:56957777-56957796 | Msa0364200:CDS | 40.0% |
| ! | TTCTAGAAGACTCTCATGGA+TGG | - | chr3_1:56957911-56957930 | None:intergenic | 40.0% |
| ATCTCATCGCTGAAGTCTTT+GGG | + | chr3_1:56958088-56958107 | Msa0364200:CDS | 40.0% | |
| TGCAACTTCAAAGGACAAGA+AGG | + | chr3_1:56958147-56958166 | Msa0364200:three_prime_UTR | 40.0% | |
| GGAAGAAAGAGTCAACAACC+TGG | + | chr3_1:56955598-56955617 | Msa0364200:CDS | 45.0% | |
| ! | AAAGCCGGGAGAGTTTTTGT+TGG | + | chr3_1:56955622-56955641 | Msa0364200:CDS | 45.0% |
| CCTTCCAACAAAAACTCTCC+CGG | - | chr3_1:56955629-56955648 | None:intergenic | 45.0% | |
| ATTCTCCATTGAGCAAGACG+AGG | - | chr3_1:56955737-56955756 | None:intergenic | 45.0% | |
| GCAAGACCCTTATGAGGAAT+TGG | + | chr3_1:56956148-56956167 | Msa0364200:intron | 45.0% | |
| TTTGTCGGTGGAGAAACACA+AGG | + | chr3_1:56956235-56956254 | Msa0364200:CDS | 45.0% | |
| GGCCTGCAATCTTCAAATCA+AGG | - | chr3_1:56956767-56956786 | None:intergenic | 45.0% | |
| TTGTTTGGGCAGCAGTTCAT+TGG | + | chr3_1:56957154-56957173 | Msa0364200:intron | 45.0% | |
| !!! | GGATTTTGATTGCCTGCAGT+CGG | + | chr3_1:56957175-56957194 | Msa0364200:intron | 45.0% |
| TTCAGGACATCAGTGGATGT+TGG | + | chr3_1:56957209-56957228 | Msa0364200:CDS | 45.0% | |
| TGGTCACCGTAGAAATGAAC+TGG | - | chr3_1:56957390-56957409 | None:intergenic | 45.0% | |
| TCTACGGTGACCAAGATTTG+AGG | + | chr3_1:56957397-56957416 | Msa0364200:intron | 45.0% | |
| CTACGGTGACCAAGATTTGA+GGG | + | chr3_1:56957398-56957417 | Msa0364200:intron | 45.0% | |
| TGGAGAACCTTGCTCCATAT+GGG | + | chr3_1:56957537-56957556 | Msa0364200:CDS | 45.0% | |
| AAATCCTTCACCACCCCATA+TGG | - | chr3_1:56957554-56957573 | None:intergenic | 45.0% | |
| CATTCTACCAAGAGACCCTA+GGG | - | chr3_1:56957602-56957621 | None:intergenic | 45.0% | |
| !! | TGCTTTGGAAGACAGGTGAA+CGG | - | chr3_1:56957705-56957724 | None:intergenic | 45.0% |
| ! | CGACATATCTGACTTGAGAG+AGG | + | chr3_1:56957885-56957904 | Msa0364200:CDS | 45.0% |
| TGTTCCTCCAAAATGCAGAC+AGG | + | chr3_1:56958064-56958083 | Msa0364200:CDS | 45.0% | |
| GTTCCTCCAAAATGCAGACA+GGG | + | chr3_1:56958065-56958084 | Msa0364200:CDS | 45.0% | |
| ! | TGAGATCCCTGTCTGCATTT+TGG | - | chr3_1:56958074-56958093 | None:intergenic | 45.0% |
| GATCTCATCGCTGAAGTCTT+TGG | + | chr3_1:56958087-56958106 | Msa0364200:CDS | 45.0% | |
| TCTCATCGCTGAAGTCTTTG+GGG | + | chr3_1:56958089-56958108 | Msa0364200:CDS | 45.0% | |
| ! | GAAGTCTTTGGGGAAGTTCT+TGG | + | chr3_1:56958099-56958118 | Msa0364200:CDS | 45.0% |
| CTTCAAAGGACAAGAAGGCT+CGG | + | chr3_1:56958152-56958171 | Msa0364200:three_prime_UTR | 45.0% | |
| AGTCAACAACCTGGGAAAGC+CGG | + | chr3_1:56955607-56955626 | Msa0364200:CDS | 50.0% | |
| ! | CCGGGAGAGTTTTTGTTGGA+AGG | + | chr3_1:56955626-56955645 | Msa0364200:CDS | 50.0% |
| CAACTCCTCGTCTTGCTCAA+TGG | + | chr3_1:56955729-56955748 | Msa0364200:intron | 50.0% | |
| !! | CGTGTCGTTAGTTCTGCTCA+TGG | + | chr3_1:56956332-56956351 | Msa0364200:CDS | 50.0% |
| CGAAAAGCTCTCACACATCC+AGG | + | chr3_1:56956359-56956378 | Msa0364200:CDS | 50.0% | |
| GTGGAGAACCTTGCTCCATA+TGG | + | chr3_1:56957536-56957555 | Msa0364200:CDS | 50.0% | |
| GGAGAACCTTGCTCCATATG+GGG | + | chr3_1:56957538-56957557 | Msa0364200:CDS | 50.0% | |
| GGGTGGTGAAGGATTTACTC+AGG | + | chr3_1:56957558-56957577 | Msa0364200:CDS | 50.0% | |
| AGATCGAACGCTAAAGCCCT+AGG | + | chr3_1:56957583-56957602 | Msa0364200:CDS | 50.0% | |
| GATCGAACGCTAAAGCCCTA+GGG | + | chr3_1:56957584-56957603 | Msa0364200:CDS | 50.0% | |
| GCATTCTACCAAGAGACCCT+AGG | - | chr3_1:56957603-56957622 | None:intergenic | 50.0% | |
| !! | GCTTTGGAAGACAGGTGAAC+GGG | - | chr3_1:56957704-56957723 | None:intergenic | 50.0% |
| ! | GATCCCTGTCTGCATTTTGG+AGG | - | chr3_1:56958071-56958090 | None:intergenic | 50.0% |
| !! | GAAGTTCTTGGTGCCTGGAA+AGG | + | chr3_1:56958111-56958130 | Msa0364200:CDS | 50.0% |
| GTCAACAACCTGGGAAAGCC+GGG | + | chr3_1:56955608-56955627 | Msa0364200:CDS | 55.0% | |
| AAAACTCTCCCGGCTTTCCC+AGG | - | chr3_1:56955619-56955638 | None:intergenic | 55.0% | |
| AGTCGGAATCCTGTGCGTTC+AGG | + | chr3_1:56957192-56957211 | Msa0364200:intron | 55.0% | |
| CACTGATGTCCTGAACGCAC+AGG | - | chr3_1:56957204-56957223 | None:intergenic | 55.0% | |
| CTGTGCGTTCAGGACATCAG+TGG | + | chr3_1:56957202-56957221 | Msa0364200:CDS | 55.0% | |
| GAACCTTGCTCCATATGGGG+TGG | + | chr3_1:56957541-56957560 | Msa0364200:CDS | 55.0% | |
| TCACCACCCCATATGGAGCA+AGG | - | chr3_1:56957547-56957566 | None:intergenic | 55.0% | |
| TGCTCCATATGGGGTGGTGA+AGG | + | chr3_1:56957547-56957566 | Msa0364200:CDS | 55.0% | |
| GCTAAAGCCCTAGGGTCTCT+TGG | + | chr3_1:56957592-56957611 | Msa0364200:CDS | 55.0% | |
| !! | TTGGGGAAGTTCTTGGTGCC+TGG | + | chr3_1:56958106-56958125 | Msa0364200:CDS | 55.0% |
| ACGCACAGGATTCCGACTGC+AGG | - | chr3_1:56957190-56957209 | None:intergenic | 60.0% | |
| GCTAGCGCTTCTGCATGCAG+CGG | + | chr3_1:56957855-56957874 | Msa0364200:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 56955577 | 56958416 | 56955577 | ID=Msa0364200;Name=Msa0364200 |
| chr3_1 | mRNA | 56955577 | 56958416 | 56955577 | ID=Msa0364200-mRNA-1;Parent=Msa0364200;Name=Msa0364200-mRNA-1;_AED=0.27;_eAED=0.31;_QI=0|0.5|0.6|1|1|1|5|276|337 |
| chr3_1 | exon | 56955577 | 56955647 | 56955577 | ID=Msa0364200-mRNA-1:exon:10667;Parent=Msa0364200-mRNA-1 |
| chr3_1 | exon | 56956232 | 56956380 | 56956232 | ID=Msa0364200-mRNA-1:exon:10668;Parent=Msa0364200-mRNA-1 |
| chr3_1 | exon | 56956673 | 56956791 | 56956673 | ID=Msa0364200-mRNA-1:exon:10669;Parent=Msa0364200-mRNA-1 |
| chr3_1 | exon | 56957194 | 56957262 | 56957194 | ID=Msa0364200-mRNA-1:exon:10670;Parent=Msa0364200-mRNA-1 |
| chr3_1 | exon | 56957535 | 56958416 | 56957535 | ID=Msa0364200-mRNA-1:exon:10671;Parent=Msa0364200-mRNA-1 |
| chr3_1 | CDS | 56955577 | 56955647 | 56955577 | ID=Msa0364200-mRNA-1:cds;Parent=Msa0364200-mRNA-1 |
| chr3_1 | CDS | 56956232 | 56956380 | 56956232 | ID=Msa0364200-mRNA-1:cds;Parent=Msa0364200-mRNA-1 |
| chr3_1 | CDS | 56956673 | 56956791 | 56956673 | ID=Msa0364200-mRNA-1:cds;Parent=Msa0364200-mRNA-1 |
| chr3_1 | CDS | 56957194 | 56957262 | 56957194 | ID=Msa0364200-mRNA-1:cds;Parent=Msa0364200-mRNA-1 |
| chr3_1 | CDS | 56957535 | 56958140 | 56957535 | ID=Msa0364200-mRNA-1:cds;Parent=Msa0364200-mRNA-1 |
| chr3_1 | three_prime_UTR | 56958141 | 56958416 | 56958141 | ID=Msa0364200-mRNA-1:three_prime_utr;Parent=Msa0364200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
