Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0411660 | XP_003600432.1 | 88.822 | 331 | 12 | 2 | 7 | 337 | 25 | 330 | 0.0 | 585 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0411660 | sp|Q680K8|Y1576_ARATH | 63.030 | 330 | 93 | 6 | 9 | 337 | 28 | 329 | 1.04e-141 | 407 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0411660 | G7IY69 | 88.822 | 331 | 12 | 2 | 7 | 337 | 25 | 330 | 0.0 | 585 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0411660 | TR | TRAF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0364200 | Msa0411660 | 0.979857 | 6.722791e-149 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0411660 | MtrunA17_Chr3g0103031 | 88.822 | 331 | 12 | 2 | 7 | 337 | 25 | 330 | 0.0 | 585 |
| Msa0411660 | MtrunA17_Chr5g0447111 | 58.654 | 312 | 103 | 4 | 25 | 335 | 43 | 329 | 3.38e-120 | 349 |
| Msa0411660 | MtrunA17_Chr1g0159831 | 44.277 | 332 | 158 | 4 | 7 | 335 | 23 | 330 | 8.17e-94 | 282 |
| Msa0411660 | MtrunA17_Chr3g0124921 | 45.260 | 327 | 150 | 6 | 7 | 331 | 22 | 321 | 2.89e-90 | 273 |
| Msa0411660 | MtrunA17_Chr5g0447191 | 56.111 | 180 | 77 | 1 | 154 | 331 | 8 | 187 | 7.81e-59 | 187 |
| Msa0411660 | MtrunA17_Chr4g0029841 | 33.175 | 211 | 136 | 2 | 119 | 329 | 71 | 276 | 2.66e-30 | 116 |
| Msa0411660 | MtrunA17_Chr3g0114411 | 30.108 | 186 | 122 | 4 | 141 | 318 | 66 | 251 | 1.15e-11 | 64.3 |
| Msa0411660 | MtrunA17_Chr7g0259501 | 27.815 | 151 | 94 | 3 | 162 | 299 | 197 | 345 | 1.36e-11 | 65.1 |
| Msa0411660 | MtrunA17_Chr1g0185861 | 28.289 | 152 | 94 | 3 | 162 | 300 | 201 | 350 | 1.39e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0411660 | AT1G55760.1 | 63.030 | 330 | 93 | 6 | 9 | 337 | 28 | 329 | 1.06e-142 | 407 |
| Msa0411660 | AT1G21780.2 | 44.985 | 329 | 154 | 4 | 7 | 335 | 23 | 324 | 4.52e-96 | 288 |
| Msa0411660 | AT1G21780.1 | 44.985 | 329 | 154 | 4 | 7 | 335 | 23 | 324 | 4.52e-96 | 288 |
| Msa0411660 | AT1G01640.1 | 30.366 | 191 | 128 | 4 | 149 | 336 | 1 | 189 | 1.21e-15 | 75.1 |
| Msa0411660 | AT1G01640.2 | 30.588 | 170 | 113 | 4 | 170 | 336 | 1 | 168 | 4.20e-13 | 67.4 |
| Msa0411660 | AT3G03740.1 | 31.959 | 194 | 114 | 5 | 156 | 333 | 199 | 390 | 1.43e-12 | 68.6 |
| Msa0411660 | AT3G56230.1 | 29.651 | 172 | 116 | 4 | 159 | 326 | 98 | 268 | 2.85e-12 | 66.6 |
| Msa0411660 | AT2G40450.1 | 32.540 | 126 | 74 | 4 | 153 | 267 | 4 | 129 | 1.04e-11 | 63.9 |
| Msa0411660 | AT2G39760.2 | 27.703 | 148 | 96 | 1 | 162 | 298 | 184 | 331 | 9.36e-11 | 62.8 |
Find 72 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCCAATATCTTGTTAAATT+TGG | 0.145528 | 3_2:+54065635 | Msa0411660:CDS |
| CTTGTAACATTGGATATTTC+AGG | 0.153912 | 3_2:-54063904 | None:intergenic |
| CGACATGTCTGTGATGTTTA+TGG | 0.202175 | 3_2:-54065387 | None:intergenic |
| TTGGTAAAATATTTGAAATT+CGG | 0.228336 | 3_2:+54065654 | Msa0411660:CDS |
| TGGTAAAATATTTGAAATTC+GGG | 0.243014 | 3_2:+54065655 | Msa0411660:CDS |
| ATCTCATCGCTGAAGTCTTT+GGG | 0.249673 | 3_2:+54065714 | Msa0411660:CDS |
| TACCAAATTTAACAAGATAT+TGG | 0.261967 | 3_2:-54065637 | None:intergenic |
| TGAGATCCCTGTCTGCATTT+TGG | 0.269401 | 3_2:-54065697 | None:intergenic |
| GATCTCATCGCTGAAGTCTT+TGG | 0.302318 | 3_2:+54065713 | Msa0411660:CDS |
| GAAGTCTTTGGGGAAGTTCT+TGG | 0.305595 | 3_2:+54065725 | Msa0411660:CDS |
| TTCCTTGATTTGAAGATTGC+AGG | 0.320978 | 3_2:+54064388 | Msa0411660:CDS |
| TTGGGGAAGTTCTTGGTGCC+TGG | 0.360323 | 3_2:+54065732 | Msa0411660:CDS |
| TTCAAAATGCATCACTATAT+CGG | 0.365062 | 3_2:+54065588 | Msa0411660:CDS |
| AGATCTTCAATATCCTTTCC+AGG | 0.389226 | 3_2:-54065750 | None:intergenic |
| TCAATTGAAGTTCCACTGTC+TGG | 0.398323 | 3_2:+54064343 | Msa0411660:CDS |
| GATCGTGTGAAAACATGCTT+TGG | 0.410502 | 3_2:-54065343 | None:intergenic |
| AAATCCTTCACCACCCCATA+TGG | 0.411517 | 3_2:-54065177 | None:intergenic |
| GTGGAGAACCTTGCTCCATA+TGG | 0.412309 | 3_2:+54065162 | Msa0411660:CDS |
| AGTCAACAACCTGGGAAAGC+CGG | 0.460730 | 3_2:+54063233 | Msa0411660:CDS |
| AGGATTATCTCTTGTAACAT+TGG | 0.466890 | 3_2:-54063914 | None:intergenic |
| TGGAGAACCTTGCTCCATAT+GGG | 0.474713 | 3_2:+54065163 | Msa0411660:CDS |
| CGAAAAGCTCTCACACATCC+AGG | 0.477842 | 3_2:+54063985 | Msa0411660:CDS |
| GTCAACAACCTGGGAAAGCC+GGG | 0.479947 | 3_2:+54063234 | Msa0411660:CDS |
| CATGTCGATTGAAGTATGTC+AGG | 0.482314 | 3_2:+54065403 | Msa0411660:CDS |
| AGTCGGAATCCTGTGCGTTC+AGG | 0.483131 | 3_2:+54064818 | Msa0411660:intron |
| GCTAAAGCCCTAGGGTCTCT+TGG | 0.484662 | 3_2:+54065218 | Msa0411660:CDS |
| AAAACTCTCCCGGCTTTCCC+AGG | 0.488012 | 3_2:-54063242 | None:intergenic |
| GCTTTGGAAGACAGGTGAAC+GGG | 0.489275 | 3_2:-54065327 | None:intergenic |
| TTATTTGAATTTGTTGTGAA+AGG | 0.491559 | 3_2:+54065828 | Msa0411660:three_prime_UTR |
| TGCTCCATATGGGGTGGTGA+AGG | 0.497886 | 3_2:+54065173 | Msa0411660:CDS |
| GGCCTGCAATCTTCAAATCA+AGG | 0.500364 | 3_2:-54064390 | None:intergenic |
| AATGCTTCGGATGGAAGTAT+AGG | 0.510954 | 3_2:+54065281 | Msa0411660:CDS |
| AGATCGAACGCTAAAGCCCT+AGG | 0.516349 | 3_2:+54065209 | Msa0411660:CDS |
| AGACATCACAATCAATGCTT+CGG | 0.520138 | 3_2:+54065268 | Msa0411660:CDS |
| TGAAGATCTTGCAACTTCAA+AGG | 0.527121 | 3_2:+54065764 | Msa0411660:exon |
| TGTTCCTCCAAAATGCAGAC+AGG | 0.530833 | 3_2:+54065690 | Msa0411660:CDS |
| GCATTCTACCAAGAGACCCT+AGG | 0.531172 | 3_2:-54065226 | None:intergenic |
| GAAGTTCTTGGTGCCTGGAA+AGG | 0.537759 | 3_2:+54065737 | Msa0411660:CDS |
| GAAAACATGCTTTGGAAGAC+AGG | 0.538730 | 3_2:-54065335 | None:intergenic |
| CGCATGATAAAAGAAGCAAT+TGG | 0.545571 | 3_2:-54063937 | None:intergenic |
| CGTGTCGTTAGTTCTGCTCA+TGG | 0.548473 | 3_2:+54063958 | Msa0411660:CDS |
| TGCAACTTCAAAGGACAAGA+AGG | 0.551453 | 3_2:+54065773 | Msa0411660:three_prime_UTR |
| TTCAGGACATCAGTGGATGT+TGG | 0.551858 | 3_2:+54064835 | Msa0411660:CDS |
| ATGAAGAATTTCTGACACAT+AGG | 0.551928 | 3_2:+54065459 | Msa0411660:CDS |
| CTTCAAAGGACAAGAAGGCT+CGG | 0.552850 | 3_2:+54065778 | Msa0411660:three_prime_UTR |
| ATGATAAAAGAAGCAATTGG+AGG | 0.567311 | 3_2:-54063934 | None:intergenic |
| ATCACAATCAATGCTTCGGA+TGG | 0.568005 | 3_2:+54065272 | Msa0411660:CDS |
| ATGAAGAGAAACGAGGATTG+TGG | 0.569942 | 3_2:+54063203 | Msa0411660:CDS |
| CATTCTACCAAGAGACCCTA+GGG | 0.576970 | 3_2:-54065225 | None:intergenic |
| GGAGAACCTTGCTCCATATG+GGG | 0.579524 | 3_2:+54065164 | Msa0411660:CDS |
| TATCTTCTAGAAGACTCTCA+TGG | 0.579860 | 3_2:-54065538 | None:intergenic |
| TTCTAGAAGACTCTCATGGA+TGG | 0.591651 | 3_2:-54065534 | None:intergenic |
| CTGTGCGTTCAGGACATCAG+TGG | 0.595435 | 3_2:+54064828 | Msa0411660:CDS |
| TCTCATCGCTGAAGTCTTTG+GGG | 0.603546 | 3_2:+54065715 | Msa0411660:CDS |
| GCATAACATATATATGTACA+AGG | 0.605577 | 3_2:-54065905 | None:intergenic |
| CACTGATGTCCTGAACGCAC+AGG | 0.608861 | 3_2:-54064827 | None:intergenic |
| GGGTGGTGAAGGATTTACTC+AGG | 0.609959 | 3_2:+54065184 | Msa0411660:CDS |
| TGTGAAATGAAGGTATTTGT+CGG | 0.609961 | 3_2:+54063846 | Msa0411660:intron |
| GGAAGAAAGAGTCAACAACC+TGG | 0.613447 | 3_2:+54063224 | Msa0411660:CDS |
| CTTGGTAGAATGCTAAGAGA+AGG | 0.615271 | 3_2:+54065236 | Msa0411660:CDS |
| TGCTTTGGAAGACAGGTGAA+CGG | 0.624572 | 3_2:-54065328 | None:intergenic |
| GATCGAACGCTAAAGCCCTA+GGG | 0.634497 | 3_2:+54065210 | Msa0411660:CDS |
| GTTCCTCCAAAATGCAGACA+GGG | 0.639389 | 3_2:+54065691 | Msa0411660:CDS |
| TCACCACCCCATATGGAGCA+AGG | 0.646739 | 3_2:-54065170 | None:intergenic |
| GAAGAAAGAGTCAACAACCT+GGG | 0.649051 | 3_2:+54063225 | Msa0411660:CDS |
| CGACATATCTGACTTGAGAG+AGG | 0.668882 | 3_2:+54065511 | Msa0411660:CDS |
| TTGTAAACAATACTACCTTG+TGG | 0.676663 | 3_2:-54065941 | None:intergenic |
| GAAATGAAGGTATTTGTCGG+TGG | 0.696589 | 3_2:+54063849 | Msa0411660:intron |
| GCTAGCGCTTCTGCATGCAG+CGG | 0.709404 | 3_2:+54065481 | Msa0411660:CDS |
| TTTGTCGGTGGAGAAACACA+AGG | 0.725214 | 3_2:+54063861 | Msa0411660:CDS |
| GAACCTTGCTCCATATGGGG+TGG | 0.727934 | 3_2:+54065167 | Msa0411660:CDS |
| GATTCATATGAAGAGAAACG+AGG | 0.748404 | 3_2:+54063196 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTATTATTGATTTTCTT+TGG | + | chr3_2:54064440-54064459 | Msa0411660:intron | 10.0% |
| !!! | GTTTTGTATATTATAAAGTT+TGG | + | chr3_2:54063745-54063764 | Msa0411660:intron | 15.0% |
| !!! | AATTTTCGATACATTATTAT+AGG | + | chr3_2:54065139-54065158 | Msa0411660:intron | 15.0% |
| !!! | ATTTTCGATACATTATTATA+GGG | + | chr3_2:54065140-54065159 | Msa0411660:intron | 15.0% |
| !!! | TTGGTAAAATATTTGAAATT+CGG | + | chr3_2:54065654-54065673 | Msa0411660:CDS | 15.0% |
| !!! | TGTTATTTCAATTTTTCTTG+TGG | + | chr3_2:54064036-54064055 | Msa0411660:intron | 20.0% |
| !! | CAAAACAAGAAATTAATCAA+CGG | - | chr3_2:54064268-54064287 | None:intergenic | 20.0% |
| !!! | AGTTTAGCTAAAATCAATTT+TGG | + | chr3_2:54064508-54064527 | Msa0411660:intron | 20.0% |
| !!! | GTTTAGCTAAAATCAATTTT+GGG | + | chr3_2:54064509-54064528 | Msa0411660:intron | 20.0% |
| !!! | TTTAGCTAAAATCAATTTTG+GGG | + | chr3_2:54064510-54064529 | Msa0411660:intron | 20.0% |
| !! | ATAGATTATCTTAATCAAAC+AGG | + | chr3_2:54064631-54064650 | Msa0411660:intron | 20.0% |
| !! | TAGATTATCTTAATCAAACA+GGG | + | chr3_2:54064632-54064651 | Msa0411660:intron | 20.0% |
| !!! | ATTGTTGATAAAGTTTGTTT+GGG | + | chr3_2:54064766-54064785 | Msa0411660:intron | 20.0% |
| !!! | ATTATAGCATTGATAATTGT+TGG | - | chr3_2:54064953-54064972 | None:intergenic | 20.0% |
| !! | ATCCAATATCTTGTTAAATT+TGG | + | chr3_2:54065635-54065654 | Msa0411660:CDS | 20.0% |
| !! | TACCAAATTTAACAAGATAT+TGG | - | chr3_2:54065640-54065659 | None:intergenic | 20.0% |
| !!! | TGGTAAAATATTTGAAATTC+GGG | + | chr3_2:54065655-54065674 | Msa0411660:CDS | 20.0% |
| !!! | TTATTTGAATTTGTTGTGAA+AGG | + | chr3_2:54065828-54065847 | Msa0411660:three_prime_UTR | 20.0% |
| ! | TTTAGCACATGTTTAGATTA+CGG | - | chr3_2:54063644-54063663 | None:intergenic | 25.0% |
| ! | AAACATGTGCTAAAAAAAAG+TGG | + | chr3_2:54063650-54063669 | Msa0411660:intron | 25.0% |
| ! | AACATGTGCTAAAAAAAAGT+GGG | + | chr3_2:54063651-54063670 | Msa0411660:intron | 25.0% |
| !!! | AAATCAGAATTTTGATTACC+TGG | - | chr3_2:54064006-54064025 | None:intergenic | 25.0% |
| !!! | CATGTAGTTTTTTATGTTGT+TGG | + | chr3_2:54064173-54064192 | Msa0411660:intron | 25.0% |
| ! | AAATTAATCAACGGAAGAAA+TGG | - | chr3_2:54064259-54064278 | None:intergenic | 25.0% |
| ! | TGCAAATGTTAATCATTTAG+AGG | + | chr3_2:54064470-54064489 | Msa0411660:intron | 25.0% |
| !! | TTAGCTAAAATCAATTTTGG+GGG | + | chr3_2:54064511-54064530 | Msa0411660:intron | 25.0% |
| ! | TATGCTCATGATAATAAAAG+TGG | - | chr3_2:54064557-54064576 | None:intergenic | 25.0% |
| ! | TAATCATTGTGATTCATCAT+TGG | - | chr3_2:54064605-54064624 | None:intergenic | 25.0% |
| ! | AGATTATCTTAATCAAACAG+GGG | + | chr3_2:54064633-54064652 | Msa0411660:intron | 25.0% |
| ! | AGATTTAACTAATTAACCCT+TGG | - | chr3_2:54064710-54064729 | None:intergenic | 25.0% |
| !! | CATTGTTGATAAAGTTTGTT+TGG | + | chr3_2:54064765-54064784 | Msa0411660:intron | 25.0% |
| !! | AGACAATTCAGATTTTAAAC+TGG | + | chr3_2:54064867-54064886 | Msa0411660:CDS | 25.0% |
| ! | GAAAATTAGCATTTCAAACA+AGG | - | chr3_2:54065126-54065145 | None:intergenic | 25.0% |
| !! | GCTTTTCTCAATTATCTTTA+CGG | + | chr3_2:54065425-54065444 | Msa0411660:CDS | 25.0% |
| !! | CTTTTCTCAATTATCTTTAC+GGG | + | chr3_2:54065426-54065445 | Msa0411660:CDS | 25.0% |
| ! | TTCAAAATGCATCACTATAT+CGG | + | chr3_2:54065588-54065607 | Msa0411660:CDS | 25.0% |
| ! | GCATAACATATATATGTACA+AGG | - | chr3_2:54065908-54065927 | None:intergenic | 25.0% |
| !! | GTTTTTGTTGGAAGGTATAT+TGG | + | chr3_2:54063260-54063279 | Msa0411660:intron | 30.0% |
| AAAGTGCAACTGATATTTCA+TGG | - | chr3_2:54063293-54063312 | None:intergenic | 30.0% | |
| ATCAGTCATTCTATTTGGAA+AGG | - | chr3_2:54063316-54063335 | None:intergenic | 30.0% | |
| AGAGAATCAGTCATTCTATT+TGG | - | chr3_2:54063321-54063340 | None:intergenic | 30.0% | |
| AAATCTGATCCTTTCAAGAT+TGG | + | chr3_2:54063411-54063430 | Msa0411660:intron | 30.0% | |
| !! | ACACACATCATTTTTAATGC+AGG | + | chr3_2:54063536-54063555 | Msa0411660:intron | 30.0% |
| GATCACAAAACATATGTACT+AGG | - | chr3_2:54063569-54063588 | None:intergenic | 30.0% | |
| ! | GTACATATGTTTTGTGATCA+CGG | + | chr3_2:54063570-54063589 | Msa0411660:intron | 30.0% |
| ACATGTGCTAAAAAAAAGTG+GGG | + | chr3_2:54063652-54063671 | Msa0411660:intron | 30.0% | |
| TCAAATCTATTTAGCCATGT+GGG | - | chr3_2:54063711-54063730 | None:intergenic | 30.0% | |
| TTCAAATCTATTTAGCCATG+TGG | - | chr3_2:54063712-54063731 | None:intergenic | 30.0% | |
| TCAAATCCAATTCCTCATAA+GGG | - | chr3_2:54063783-54063802 | None:intergenic | 30.0% | |
| !! | TTTTGTTGTGTGTGAAATGA+AGG | + | chr3_2:54063836-54063855 | Msa0411660:intron | 30.0% |
| !! | TGTGAAATGAAGGTATTTGT+CGG | + | chr3_2:54063846-54063865 | Msa0411660:intron | 30.0% |
| CTTGTAACATTGGATATTTC+AGG | - | chr3_2:54063907-54063926 | None:intergenic | 30.0% | |
| AGGATTATCTCTTGTAACAT+TGG | - | chr3_2:54063917-54063936 | None:intergenic | 30.0% | |
| ATGATAAAAGAAGCAATTGG+AGG | - | chr3_2:54063937-54063956 | None:intergenic | 30.0% | |
| ! | AGAGCAATGAAGATTTTGTT+TGG | + | chr3_2:54064320-54064339 | Msa0411660:CDS | 30.0% |
| AGTCTTAAGCATATACATCT+GGG | - | chr3_2:54064414-54064433 | None:intergenic | 30.0% | |
| AAGTCTTAAGCATATACATC+TGG | - | chr3_2:54064415-54064434 | None:intergenic | 30.0% | |
| GTTAATCATTTAGAGGCAAT+TGG | + | chr3_2:54064477-54064496 | Msa0411660:intron | 30.0% | |
| !! | TCAATTTTGGGGGTAATAAT+TGG | + | chr3_2:54064521-54064540 | Msa0411660:intron | 30.0% |
| ! | TCATTGGTGATTATGAACAA+AGG | - | chr3_2:54064589-54064608 | None:intergenic | 30.0% |
| ACAATGTCAGAGATTCAAAT+TGG | - | chr3_2:54064751-54064770 | None:intergenic | 30.0% | |
| CAAAATCCAGTTCATTTCTA+CGG | + | chr3_2:54065007-54065026 | Msa0411660:intron | 30.0% | |
| ATAATGATTCCCTCAAATCT+TGG | - | chr3_2:54065036-54065055 | None:intergenic | 30.0% | |
| TTCGATACATTATTATAGGG+TGG | + | chr3_2:54065143-54065162 | Msa0411660:intron | 30.0% | |
| ATGAAGAATTTCTGACACAT+AGG | + | chr3_2:54065459-54065478 | Msa0411660:CDS | 30.0% | |
| ATACGAAAAATGTACTTGAG+AGG | + | chr3_2:54065564-54065583 | Msa0411660:CDS | 30.0% | |
| TTGTAAACAATACTACCTTG+TGG | - | chr3_2:54065944-54065963 | None:intergenic | 30.0% | |
| TCAATGGAGAATCGATAACT+TGG | + | chr3_2:54063371-54063390 | Msa0411660:intron | 35.0% | |
| ATCCTTTCAAGATTGGTATC+TGG | + | chr3_2:54063418-54063437 | Msa0411660:intron | 35.0% | |
| TTCCAGATACCAATCTTGAA+AGG | - | chr3_2:54063423-54063442 | None:intergenic | 35.0% | |
| ! | TCAAGATTGGTATCTGGAAT+TGG | + | chr3_2:54063424-54063443 | Msa0411660:intron | 35.0% |
| AAAAAAAAGTGGGGTTGTGT+TGG | + | chr3_2:54063661-54063680 | Msa0411660:intron | 35.0% | |
| !!! | TTTTTTGCAAGACCCTTATG+AGG | + | chr3_2:54063768-54063787 | Msa0411660:intron | 35.0% |
| CTCAAATCCAATTCCTCATA+AGG | - | chr3_2:54063784-54063803 | None:intergenic | 35.0% | |
| CGCATGATAAAAGAAGCAAT+TGG | - | chr3_2:54063940-54063959 | None:intergenic | 35.0% | |
| TCTTGTGGATAGAGAACTAT+CGG | + | chr3_2:54064051-54064070 | Msa0411660:intron | 35.0% | |
| ! | ATGATGAATTTTCCAGACAG+TGG | - | chr3_2:54064358-54064377 | None:intergenic | 35.0% |
| ! | TTCCTTGATTTGAAGATTGC+AGG | + | chr3_2:54064388-54064407 | Msa0411660:CDS | 35.0% |
| TTATCTTAATCAAACAGGGG+AGG | + | chr3_2:54064636-54064655 | Msa0411660:intron | 35.0% | |
| TAAAATTAACCCTCAAGCCA+AGG | + | chr3_2:54064690-54064709 | Msa0411660:intron | 35.0% | |
| AAAATTAACCCTCAAGCCAA+GGG | + | chr3_2:54064691-54064710 | Msa0411660:intron | 35.0% | |
| ! | AAATCAGCATGTTTTCTGCA+CGG | + | chr3_2:54064915-54064934 | Msa0411660:intron | 35.0% |
| ! | CGTAGAAATGAACTGGATTT+TGG | - | chr3_2:54065009-54065028 | None:intergenic | 35.0% |
| AGACATCACAATCAATGCTT+CGG | + | chr3_2:54065268-54065287 | Msa0411660:CDS | 35.0% | |
| ! | TATCTTCTAGAAGACTCTCA+TGG | - | chr3_2:54065541-54065560 | None:intergenic | 35.0% |
| AGATCTTCAATATCCTTTCC+AGG | - | chr3_2:54065753-54065772 | None:intergenic | 35.0% | |
| TGAAGATCTTGCAACTTCAA+AGG | + | chr3_2:54065764-54065783 | Msa0411660:exon | 35.0% | |
| ! | GCTTTTCAGTATAAACCACA+AGG | + | chr3_2:54065926-54065945 | Msa0411660:three_prime_UTR | 35.0% |
| ATGAAGAGAAACGAGGATTG+TGG | + | chr3_2:54063203-54063222 | Msa0411660:CDS | 40.0% | |
| GAAGAAAGAGTCAACAACCT+GGG | + | chr3_2:54063225-54063244 | Msa0411660:CDS | 40.0% | |
| CGGTGAATTTGTCAGAATCA+CGG | - | chr3_2:54063624-54063643 | None:intergenic | 40.0% | |
| AAAAATTGAGACAGCCCACA+TGG | + | chr3_2:54063694-54063713 | Msa0411660:intron | 40.0% | |
| ! | ATTGGATTTGAGAGTGTGTG+TGG | + | chr3_2:54063792-54063811 | Msa0411660:intron | 40.0% |
| !! | GAAATGAAGGTATTTGTCGG+TGG | + | chr3_2:54063849-54063868 | Msa0411660:intron | 40.0% |
| TCAATTGAAGTTCCACTGTC+TGG | + | chr3_2:54064343-54064362 | Msa0411660:CDS | 40.0% | |
| ! | CTAATTAACCCTTGGCTTGA+GGG | - | chr3_2:54064702-54064721 | None:intergenic | 40.0% |
| ! | ACTAATTAACCCTTGGCTTG+AGG | - | chr3_2:54064703-54064722 | None:intergenic | 40.0% |
| CTTGGTAGAATGCTAAGAGA+AGG | + | chr3_2:54065236-54065255 | Msa0411660:CDS | 40.0% | |
| ATCACAATCAATGCTTCGGA+TGG | + | chr3_2:54065272-54065291 | Msa0411660:CDS | 40.0% | |
| ! | AATGCTTCGGATGGAAGTAT+AGG | + | chr3_2:54065281-54065300 | Msa0411660:CDS | 40.0% |
| !! | GAAAACATGCTTTGGAAGAC+AGG | - | chr3_2:54065338-54065357 | None:intergenic | 40.0% |
| GATCGTGTGAAAACATGCTT+TGG | - | chr3_2:54065346-54065365 | None:intergenic | 40.0% | |
| CGACATGTCTGTGATGTTTA+TGG | - | chr3_2:54065390-54065409 | None:intergenic | 40.0% | |
| ! | CATGTCGATTGAAGTATGTC+AGG | + | chr3_2:54065403-54065422 | Msa0411660:CDS | 40.0% |
| ! | TTCTAGAAGACTCTCATGGA+TGG | - | chr3_2:54065537-54065556 | None:intergenic | 40.0% |
| ATCTCATCGCTGAAGTCTTT+GGG | + | chr3_2:54065714-54065733 | Msa0411660:CDS | 40.0% | |
| TGCAACTTCAAAGGACAAGA+AGG | + | chr3_2:54065773-54065792 | Msa0411660:three_prime_UTR | 40.0% | |
| GGAAGAAAGAGTCAACAACC+TGG | + | chr3_2:54063224-54063243 | Msa0411660:CDS | 45.0% | |
| ! | AAAGCCGGGAGAGTTTTTGT+TGG | + | chr3_2:54063248-54063267 | Msa0411660:CDS | 45.0% |
| CCTTCCAACAAAAACTCTCC+CGG | - | chr3_2:54063255-54063274 | None:intergenic | 45.0% | |
| ATTCTCCATTGAGCAAGACG+AGG | - | chr3_2:54063363-54063382 | None:intergenic | 45.0% | |
| GCAAGACCCTTATGAGGAAT+TGG | + | chr3_2:54063774-54063793 | Msa0411660:intron | 45.0% | |
| TTTGTCGGTGGAGAAACACA+AGG | + | chr3_2:54063861-54063880 | Msa0411660:CDS | 45.0% | |
| GGCCTGCAATCTTCAAATCA+AGG | - | chr3_2:54064393-54064412 | None:intergenic | 45.0% | |
| TTGTTTGGGCAGCAGTTCAT+TGG | + | chr3_2:54064780-54064799 | Msa0411660:intron | 45.0% | |
| !!! | GGATTTTGATTGCCTGCAGT+CGG | + | chr3_2:54064801-54064820 | Msa0411660:intron | 45.0% |
| TTCAGGACATCAGTGGATGT+TGG | + | chr3_2:54064835-54064854 | Msa0411660:CDS | 45.0% | |
| TGGTCACCGTAGAAATGAAC+TGG | - | chr3_2:54065016-54065035 | None:intergenic | 45.0% | |
| TCTACGGTGACCAAGATTTG+AGG | + | chr3_2:54065023-54065042 | Msa0411660:intron | 45.0% | |
| CTACGGTGACCAAGATTTGA+GGG | + | chr3_2:54065024-54065043 | Msa0411660:intron | 45.0% | |
| TGGAGAACCTTGCTCCATAT+GGG | + | chr3_2:54065163-54065182 | Msa0411660:CDS | 45.0% | |
| AAATCCTTCACCACCCCATA+TGG | - | chr3_2:54065180-54065199 | None:intergenic | 45.0% | |
| CATTCTACCAAGAGACCCTA+GGG | - | chr3_2:54065228-54065247 | None:intergenic | 45.0% | |
| !! | TGCTTTGGAAGACAGGTGAA+CGG | - | chr3_2:54065331-54065350 | None:intergenic | 45.0% |
| ! | CGACATATCTGACTTGAGAG+AGG | + | chr3_2:54065511-54065530 | Msa0411660:CDS | 45.0% |
| TGTTCCTCCAAAATGCAGAC+AGG | + | chr3_2:54065690-54065709 | Msa0411660:CDS | 45.0% | |
| GTTCCTCCAAAATGCAGACA+GGG | + | chr3_2:54065691-54065710 | Msa0411660:CDS | 45.0% | |
| ! | TGAGATCCCTGTCTGCATTT+TGG | - | chr3_2:54065700-54065719 | None:intergenic | 45.0% |
| GATCTCATCGCTGAAGTCTT+TGG | + | chr3_2:54065713-54065732 | Msa0411660:CDS | 45.0% | |
| TCTCATCGCTGAAGTCTTTG+GGG | + | chr3_2:54065715-54065734 | Msa0411660:CDS | 45.0% | |
| ! | GAAGTCTTTGGGGAAGTTCT+TGG | + | chr3_2:54065725-54065744 | Msa0411660:CDS | 45.0% |
| CTTCAAAGGACAAGAAGGCT+CGG | + | chr3_2:54065778-54065797 | Msa0411660:three_prime_UTR | 45.0% | |
| AGTCAACAACCTGGGAAAGC+CGG | + | chr3_2:54063233-54063252 | Msa0411660:CDS | 50.0% | |
| ! | CCGGGAGAGTTTTTGTTGGA+AGG | + | chr3_2:54063252-54063271 | Msa0411660:CDS | 50.0% |
| CAACTCCTCGTCTTGCTCAA+TGG | + | chr3_2:54063355-54063374 | Msa0411660:intron | 50.0% | |
| !! | CGTGTCGTTAGTTCTGCTCA+TGG | + | chr3_2:54063958-54063977 | Msa0411660:CDS | 50.0% |
| CGAAAAGCTCTCACACATCC+AGG | + | chr3_2:54063985-54064004 | Msa0411660:CDS | 50.0% | |
| GTGGAGAACCTTGCTCCATA+TGG | + | chr3_2:54065162-54065181 | Msa0411660:CDS | 50.0% | |
| GGAGAACCTTGCTCCATATG+GGG | + | chr3_2:54065164-54065183 | Msa0411660:CDS | 50.0% | |
| GGGTGGTGAAGGATTTACTC+AGG | + | chr3_2:54065184-54065203 | Msa0411660:CDS | 50.0% | |
| AGATCGAACGCTAAAGCCCT+AGG | + | chr3_2:54065209-54065228 | Msa0411660:CDS | 50.0% | |
| GATCGAACGCTAAAGCCCTA+GGG | + | chr3_2:54065210-54065229 | Msa0411660:CDS | 50.0% | |
| GCATTCTACCAAGAGACCCT+AGG | - | chr3_2:54065229-54065248 | None:intergenic | 50.0% | |
| !! | GCTTTGGAAGACAGGTGAAC+GGG | - | chr3_2:54065330-54065349 | None:intergenic | 50.0% |
| ! | GATCCCTGTCTGCATTTTGG+AGG | - | chr3_2:54065697-54065716 | None:intergenic | 50.0% |
| !! | GAAGTTCTTGGTGCCTGGAA+AGG | + | chr3_2:54065737-54065756 | Msa0411660:CDS | 50.0% |
| GTCAACAACCTGGGAAAGCC+GGG | + | chr3_2:54063234-54063253 | Msa0411660:CDS | 55.0% | |
| AAAACTCTCCCGGCTTTCCC+AGG | - | chr3_2:54063245-54063264 | None:intergenic | 55.0% | |
| AGTCGGAATCCTGTGCGTTC+AGG | + | chr3_2:54064818-54064837 | Msa0411660:intron | 55.0% | |
| CACTGATGTCCTGAACGCAC+AGG | - | chr3_2:54064830-54064849 | None:intergenic | 55.0% | |
| CTGTGCGTTCAGGACATCAG+TGG | + | chr3_2:54064828-54064847 | Msa0411660:CDS | 55.0% | |
| GAACCTTGCTCCATATGGGG+TGG | + | chr3_2:54065167-54065186 | Msa0411660:CDS | 55.0% | |
| TCACCACCCCATATGGAGCA+AGG | - | chr3_2:54065173-54065192 | None:intergenic | 55.0% | |
| TGCTCCATATGGGGTGGTGA+AGG | + | chr3_2:54065173-54065192 | Msa0411660:CDS | 55.0% | |
| GCTAAAGCCCTAGGGTCTCT+TGG | + | chr3_2:54065218-54065237 | Msa0411660:CDS | 55.0% | |
| !! | TTGGGGAAGTTCTTGGTGCC+TGG | + | chr3_2:54065732-54065751 | Msa0411660:CDS | 55.0% |
| ACGCACAGGATTCCGACTGC+AGG | - | chr3_2:54064816-54064835 | None:intergenic | 60.0% | |
| GCTAGCGCTTCTGCATGCAG+CGG | + | chr3_2:54065481-54065500 | Msa0411660:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 54063203 | 54066042 | 54063203 | ID=Msa0411660;Name=Msa0411660 |
| chr3_2 | mRNA | 54063203 | 54066042 | 54063203 | ID=Msa0411660-mRNA-1;Parent=Msa0411660;Name=Msa0411660-mRNA-1;_AED=0.27;_eAED=0.31;_QI=0|0.5|0.6|1|1|1|5|276|337 |
| chr3_2 | exon | 54063203 | 54063273 | 54063203 | ID=Msa0411660-mRNA-1:exon:10942;Parent=Msa0411660-mRNA-1 |
| chr3_2 | exon | 54063858 | 54064006 | 54063858 | ID=Msa0411660-mRNA-1:exon:10943;Parent=Msa0411660-mRNA-1 |
| chr3_2 | exon | 54064299 | 54064417 | 54064299 | ID=Msa0411660-mRNA-1:exon:10944;Parent=Msa0411660-mRNA-1 |
| chr3_2 | exon | 54064820 | 54064888 | 54064820 | ID=Msa0411660-mRNA-1:exon:10945;Parent=Msa0411660-mRNA-1 |
| chr3_2 | exon | 54065161 | 54066042 | 54065161 | ID=Msa0411660-mRNA-1:exon:10946;Parent=Msa0411660-mRNA-1 |
| chr3_2 | CDS | 54063203 | 54063273 | 54063203 | ID=Msa0411660-mRNA-1:cds;Parent=Msa0411660-mRNA-1 |
| chr3_2 | CDS | 54063858 | 54064006 | 54063858 | ID=Msa0411660-mRNA-1:cds;Parent=Msa0411660-mRNA-1 |
| chr3_2 | CDS | 54064299 | 54064417 | 54064299 | ID=Msa0411660-mRNA-1:cds;Parent=Msa0411660-mRNA-1 |
| chr3_2 | CDS | 54064820 | 54064888 | 54064820 | ID=Msa0411660-mRNA-1:cds;Parent=Msa0411660-mRNA-1 |
| chr3_2 | CDS | 54065161 | 54065766 | 54065161 | ID=Msa0411660-mRNA-1:cds;Parent=Msa0411660-mRNA-1 |
| chr3_2 | three_prime_UTR | 54065767 | 54066042 | 54065767 | ID=Msa0411660-mRNA-1:three_prime_utr;Parent=Msa0411660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
