Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0364480 | XP_003600455.1 | 74.016 | 127 | 32 | 1 | 10 | 136 | 156 | 281 | 5.21e-51 | 184 |
| Msa0364480 | XP_003600455.1 | 84.859 | 284 | 39 | 2 | 163 | 445 | 1 | 281 | 1.80e-172 | 494 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0364480 | sp|Q8L3W1|VRN1_ARATH | 29.032 | 341 | 171 | 13 | 170 | 445 | 1 | 335 | 2.48e-28 | 117 |
| Msa0364480 | sp|Q8L3W1|VRN1_ARATH | 31.008 | 129 | 82 | 4 | 12 | 137 | 212 | 336 | 3.90e-12 | 70.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0364480 | G8A2Z2 | 74.016 | 127 | 32 | 1 | 10 | 136 | 156 | 281 | 2.49e-51 | 184 |
| Msa0364480 | G8A2Z2 | 84.859 | 284 | 39 | 2 | 163 | 445 | 1 | 281 | 8.59e-173 | 494 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0364480 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0364480 | Msa0456120 | 0.834461 | 2.957943e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0364480 | MtrunA17_Chr3g0103181 | 75.352 | 284 | 64 | 4 | 163 | 445 | 1 | 279 | 6.99e-149 | 424 |
| Msa0364480 | MtrunA17_Chr3g0103181 | 67.544 | 114 | 36 | 1 | 23 | 136 | 167 | 279 | 3.24e-42 | 150 |
| Msa0364480 | MtrunA17_Chr3g0103191 | 80.478 | 251 | 48 | 1 | 163 | 412 | 1 | 251 | 1.19e-144 | 412 |
| Msa0364480 | MtrunA17_Chr3g0103191 | 72.340 | 94 | 26 | 0 | 10 | 103 | 158 | 251 | 4.27e-39 | 141 |
| Msa0364480 | MtrunA17_Chr3g0103201 | 82.273 | 220 | 38 | 1 | 227 | 445 | 1 | 220 | 3.13e-129 | 372 |
| Msa0364480 | MtrunA17_Chr3g0103201 | 74.016 | 127 | 32 | 1 | 10 | 136 | 95 | 220 | 4.22e-56 | 185 |
| Msa0364480 | MtrunA17_Chr3g0103171 | 70.611 | 262 | 73 | 3 | 187 | 445 | 5 | 265 | 2.06e-127 | 369 |
| Msa0364480 | MtrunA17_Chr3g0103171 | 58.462 | 130 | 53 | 1 | 8 | 136 | 136 | 265 | 5.74e-42 | 149 |
| Msa0364480 | MtrunA17_Chr3g0103151 | 76.543 | 162 | 36 | 2 | 163 | 323 | 1 | 161 | 5.86e-84 | 254 |
| Msa0364480 | MtrunA17_Chr3g0103161 | 68.595 | 121 | 38 | 0 | 324 | 444 | 2 | 122 | 1.64e-52 | 172 |
| Msa0364480 | MtrunA17_Chr3g0103161 | 66.129 | 124 | 41 | 1 | 14 | 137 | 2 | 124 | 1.01e-49 | 165 |
| Msa0364480 | MtrunA17_Chr7g0233561 | 36.634 | 303 | 158 | 10 | 171 | 445 | 15 | 311 | 6.35e-49 | 169 |
| Msa0364480 | MtrunA17_Chr1g0163071 | 34.247 | 292 | 151 | 8 | 188 | 445 | 2 | 286 | 4.38e-45 | 159 |
| Msa0364480 | MtrunA17_Chr8g0390841 | 32.468 | 308 | 160 | 6 | 172 | 445 | 37 | 330 | 4.28e-43 | 159 |
| Msa0364480 | MtrunA17_Chr8g0390841 | 35.043 | 117 | 65 | 4 | 26 | 139 | 225 | 333 | 9.31e-13 | 70.1 |
| Msa0364480 | MtrunA17_Chr8g0390841 | 49.231 | 65 | 32 | 1 | 381 | 445 | 454 | 517 | 6.26e-11 | 64.3 |
| Msa0364480 | MtrunA17_Chr3g0131891 | 33.448 | 290 | 175 | 8 | 171 | 445 | 16 | 302 | 1.32e-41 | 150 |
| Msa0364480 | MtrunA17_Chr7g0233521 | 35.185 | 270 | 154 | 7 | 188 | 445 | 2 | 262 | 3.40e-40 | 145 |
| Msa0364480 | MtrunA17_Chr1g0208771 | 33.333 | 294 | 145 | 8 | 187 | 445 | 12 | 289 | 2.48e-39 | 147 |
| Msa0364480 | MtrunA17_Chr1g0208771 | 25.000 | 284 | 174 | 11 | 174 | 445 | 201 | 457 | 4.21e-14 | 73.9 |
| Msa0364480 | MtrunA17_Chr7g0233571 | 32.444 | 225 | 118 | 3 | 166 | 365 | 2 | 217 | 1.98e-34 | 128 |
| Msa0364480 | MtrunA17_Chr7g0233541 | 30.466 | 279 | 172 | 6 | 188 | 445 | 2 | 279 | 9.83e-34 | 128 |
| Msa0364480 | MtrunA17_Chr7g0233531 | 31.321 | 265 | 171 | 6 | 188 | 445 | 2 | 262 | 2.05e-32 | 124 |
| Msa0364480 | MtrunA17_Chr4g0067431 | 31.046 | 306 | 172 | 12 | 172 | 445 | 13 | 311 | 5.58e-31 | 121 |
| Msa0364480 | MtrunA17_Chr1g0163181 | 29.693 | 293 | 170 | 10 | 176 | 444 | 11 | 291 | 9.83e-30 | 120 |
| Msa0364480 | MtrunA17_Chr1g0163251 | 30.357 | 280 | 176 | 8 | 174 | 444 | 9 | 278 | 1.79e-29 | 119 |
| Msa0364480 | MtrunA17_Chr1g0163131 | 31.803 | 305 | 173 | 9 | 164 | 442 | 8 | 303 | 2.02e-29 | 117 |
| Msa0364480 | MtrunA17_Chr1g0163261 | 26.224 | 286 | 189 | 8 | 171 | 444 | 6 | 281 | 7.42e-26 | 107 |
| Msa0364480 | MtrunA17_Chr3g0077411 | 25.169 | 445 | 263 | 11 | 16 | 445 | 127 | 516 | 9.03e-25 | 106 |
| Msa0364480 | MtrunA17_Chr3g0077411 | 27.106 | 273 | 137 | 5 | 174 | 439 | 25 | 242 | 3.34e-18 | 87.0 |
| Msa0364480 | MtrunA17_Chr3g0077451 | 28.519 | 270 | 145 | 5 | 182 | 445 | 6 | 233 | 1.55e-23 | 99.0 |
| Msa0364480 | MtrunA17_Chr1g0163221 | 29.252 | 294 | 176 | 11 | 172 | 445 | 9 | 290 | 2.42e-23 | 100 |
| Msa0364480 | MtrunA17_Chr1g0163201 | 26.545 | 275 | 176 | 9 | 187 | 444 | 18 | 283 | 2.84e-23 | 101 |
| Msa0364480 | MtrunA17_Chr5g0419201 | 32.484 | 157 | 88 | 3 | 174 | 319 | 16 | 165 | 6.13e-23 | 95.9 |
| Msa0364480 | MtrunA17_Chr5g0429931 | 29.008 | 262 | 153 | 6 | 187 | 445 | 10 | 241 | 1.13e-21 | 94.0 |
| Msa0364480 | MtrunA17_Chr3g0077461 | 26.216 | 370 | 184 | 10 | 82 | 439 | 169 | 461 | 1.20e-21 | 97.1 |
| Msa0364480 | MtrunA17_Chr3g0077461 | 26.909 | 275 | 139 | 8 | 169 | 439 | 1 | 217 | 7.77e-15 | 76.3 |
| Msa0364480 | MtrunA17_Chr1g0163231 | 25.256 | 293 | 179 | 8 | 171 | 444 | 6 | 277 | 4.40e-21 | 93.2 |
| Msa0364480 | MtrunA17_Chr1g0171611 | 25.887 | 282 | 179 | 8 | 171 | 444 | 6 | 265 | 1.04e-20 | 92.0 |
| Msa0364480 | MtrunA17_Chr1g0154131 | 22.917 | 480 | 300 | 17 | 16 | 442 | 4 | 466 | 2.58e-19 | 90.1 |
| Msa0364480 | MtrunA17_Chr1g0163191 | 36.792 | 106 | 63 | 2 | 174 | 279 | 9 | 110 | 1.63e-18 | 82.4 |
| Msa0364480 | MtrunA17_Chr1g0162441 | 37.037 | 108 | 64 | 2 | 170 | 273 | 1 | 108 | 4.32e-18 | 86.3 |
| Msa0364480 | MtrunA17_Chr1g0163061 | 38.596 | 114 | 67 | 2 | 160 | 270 | 1 | 114 | 3.07e-17 | 81.6 |
| Msa0364480 | MtrunA17_Chr3g0077421 | 29.661 | 236 | 113 | 9 | 219 | 445 | 4 | 195 | 3.48e-17 | 79.7 |
| Msa0364480 | MtrunA17_Chr3g0077441 | 29.661 | 236 | 113 | 9 | 219 | 445 | 4 | 195 | 3.48e-17 | 79.7 |
| Msa0364480 | MtrunA17_Chr1g0163121 | 39.130 | 115 | 62 | 3 | 186 | 295 | 9 | 120 | 8.15e-17 | 77.4 |
| Msa0364480 | MtrunA17_Chr4g0033961 | 30.303 | 132 | 82 | 2 | 174 | 295 | 6 | 137 | 1.04e-16 | 82.0 |
| Msa0364480 | MtrunA17_Chr6g0467351 | 26.852 | 216 | 136 | 5 | 172 | 368 | 13 | 225 | 1.34e-16 | 79.0 |
| Msa0364480 | MtrunA17_Chr1g0163241 | 34.167 | 120 | 67 | 3 | 174 | 289 | 15 | 126 | 1.50e-16 | 77.0 |
| Msa0364480 | MtrunA17_Chr6g0476181 | 41.509 | 106 | 59 | 2 | 188 | 293 | 2 | 104 | 2.77e-16 | 76.3 |
| Msa0364480 | MtrunA17_Chr1g0163081 | 39.474 | 114 | 61 | 3 | 188 | 296 | 6 | 116 | 3.60e-16 | 75.5 |
| Msa0364480 | MtrunA17_Chr1g0163101 | 32.624 | 141 | 84 | 4 | 164 | 296 | 7 | 144 | 7.16e-16 | 75.5 |
| Msa0364480 | MtrunA17_Chr1g0154161 | 24.306 | 288 | 190 | 8 | 175 | 445 | 30 | 306 | 8.85e-16 | 78.2 |
| Msa0364480 | MtrunA17_Chr1g0162161 | 35.484 | 124 | 72 | 4 | 188 | 306 | 4 | 124 | 1.98e-15 | 73.6 |
| Msa0364480 | MtrunA17_Chr3g0077431 | 27.039 | 233 | 122 | 5 | 219 | 445 | 4 | 194 | 2.09e-15 | 74.7 |
| Msa0364480 | MtrunA17_Chr3g0077381 | 34.503 | 171 | 95 | 4 | 103 | 270 | 189 | 345 | 3.59e-15 | 77.4 |
| Msa0364480 | MtrunA17_Chr3g0077381 | 34.454 | 119 | 75 | 1 | 175 | 290 | 23 | 141 | 6.62e-15 | 76.6 |
| Msa0364480 | MtrunA17_Chr1g0163161 | 41.176 | 102 | 51 | 3 | 200 | 295 | 1 | 99 | 5.04e-15 | 71.6 |
| Msa0364480 | MtrunA17_Chr1g0162411 | 36.449 | 107 | 63 | 3 | 169 | 273 | 3 | 106 | 5.02e-14 | 73.9 |
| Msa0364480 | MtrunA17_Chr1g0163141 | 39.000 | 100 | 58 | 2 | 186 | 285 | 9 | 105 | 5.55e-14 | 70.1 |
| Msa0364480 | MtrunA17_Chr3g0077361 | 25.448 | 279 | 136 | 9 | 174 | 439 | 40 | 259 | 1.35e-13 | 72.8 |
| Msa0364480 | MtrunA17_Chr4g0009491 | 38.947 | 95 | 56 | 1 | 178 | 270 | 229 | 323 | 3.28e-13 | 71.2 |
| Msa0364480 | MtrunA17_Chr4g0009491 | 24.219 | 256 | 129 | 8 | 178 | 425 | 3 | 201 | 4.59e-11 | 64.7 |
| Msa0364480 | MtrunA17_Chr1g0154171 | 23.248 | 314 | 184 | 9 | 184 | 445 | 34 | 342 | 4.55e-13 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0364480 | AT3G18990.1 | 29.032 | 341 | 171 | 13 | 170 | 445 | 1 | 335 | 2.52e-29 | 117 |
| Msa0364480 | AT3G18990.1 | 31.008 | 129 | 82 | 4 | 12 | 137 | 212 | 336 | 3.96e-13 | 70.9 |
| Msa0364480 | AT3G18990.2 | 29.032 | 341 | 171 | 13 | 170 | 445 | 1 | 335 | 9.62e-29 | 116 |
| Msa0364480 | AT3G18990.2 | 31.008 | 129 | 82 | 4 | 12 | 137 | 212 | 336 | 4.83e-13 | 70.9 |
| Msa0364480 | AT1G49475.1 | 37.162 | 148 | 79 | 3 | 173 | 307 | 33 | 179 | 2.29e-18 | 83.2 |
| Msa0364480 | AT4G01580.1 | 34.058 | 138 | 83 | 3 | 173 | 308 | 29 | 160 | 1.24e-15 | 75.5 |
| Msa0364480 | AT3G18960.2 | 39.000 | 100 | 59 | 1 | 173 | 270 | 29 | 128 | 5.32e-15 | 73.9 |
| Msa0364480 | AT3G18960.1 | 39.000 | 100 | 59 | 1 | 173 | 270 | 29 | 128 | 6.21e-15 | 73.9 |
| Msa0364480 | AT1G49480.3 | 30.233 | 129 | 83 | 4 | 12 | 137 | 97 | 221 | 7.42e-14 | 71.2 |
| Msa0364480 | AT1G49480.3 | 31.538 | 130 | 77 | 5 | 322 | 445 | 97 | 220 | 3.09e-12 | 66.6 |
| Msa0364480 | AT1G49480.1 | 30.233 | 129 | 83 | 4 | 12 | 137 | 97 | 221 | 7.42e-14 | 71.2 |
| Msa0364480 | AT1G49480.1 | 31.538 | 130 | 77 | 5 | 322 | 445 | 97 | 220 | 3.09e-12 | 66.6 |
| Msa0364480 | AT1G49480.2 | 30.233 | 129 | 83 | 4 | 12 | 137 | 97 | 221 | 7.42e-14 | 71.2 |
| Msa0364480 | AT1G49480.2 | 31.538 | 130 | 77 | 5 | 322 | 445 | 97 | 220 | 3.09e-12 | 66.6 |
| Msa0364480 | AT2G24680.6 | 23.898 | 431 | 266 | 17 | 39 | 436 | 52 | 453 | 1.72e-13 | 73.2 |
| Msa0364480 | AT3G18960.3 | 41.667 | 84 | 49 | 0 | 187 | 270 | 8 | 91 | 7.87e-13 | 67.0 |
| Msa0364480 | AT4G33280.1 | 24.437 | 311 | 183 | 12 | 172 | 445 | 23 | 318 | 8.91e-13 | 69.7 |
| Msa0364480 | AT2G24680.7 | 23.981 | 417 | 252 | 16 | 39 | 436 | 52 | 422 | 9.43e-13 | 70.5 |
| Msa0364480 | AT2G24680.2 | 23.981 | 417 | 252 | 16 | 39 | 436 | 52 | 422 | 9.99e-13 | 70.5 |
Find 74 sgRNAs with CRISPR-Local
Find 379 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATAACCCCTTTAAAATT+TGG | 0.181999 | 3_1:+57547666 | None:intergenic |
| ACACTAAATGGAAAATTTAT+TGG | 0.195816 | 3_1:-57548419 | Msa0364480:CDS |
| TGTCTCTTTGTAAACTTTCT+TGG | 0.219902 | 3_1:+57548486 | None:intergenic |
| AGACTCCTGATGACACTAAA+TGG | 0.267004 | 3_1:-57548431 | Msa0364480:CDS |
| TCCTGAGCTCTAGCATCTTT+TGG | 0.280232 | 3_1:+57554177 | None:intergenic |
| AATCTATTTCTACCGCATTC+TGG | 0.299695 | 3_1:+57548265 | None:intergenic |
| CTCTCTTGGACATGGCTGTT+TGG | 0.307883 | 3_1:-57548337 | Msa0364480:CDS |
| TTGATTTGCTTCCAGATGAT+TGG | 0.329110 | 3_1:+57547833 | None:intergenic |
| CGACCACACAAGAAAGTTAG+AGG | 0.346342 | 3_1:-57548114 | Msa0364480:intron |
| ATTGATAAACAAGAAAGATT+TGG | 0.351442 | 3_1:-57547484 | Msa0364480:CDS |
| TTTACTGAAAATTACTCTCT+TGG | 0.379721 | 3_1:-57548351 | Msa0364480:CDS |
| AAAGAACTTCATCAATGAAT+TGG | 0.387908 | 3_1:-57554200 | Msa0364480:CDS |
| TCCTTCAAACTAATCTTCAT+AGG | 0.391228 | 3_1:-57548802 | Msa0364480:CDS |
| TATGTAACTGCAGATTTAAA+AGG | 0.392361 | 3_1:-57553957 | Msa0364480:CDS |
| TCCTGAGCTCTAACATCCTT+TGG | 0.395829 | 3_1:+57547909 | None:intergenic |
| TCCTATGAAGATTAGTTTGA+AGG | 0.404224 | 3_1:+57548801 | None:intergenic |
| TGATTTGCTTCCAGATGATT+GGG | 0.406973 | 3_1:+57547834 | None:intergenic |
| TCTCATACAGCCCAATCATC+TGG | 0.413662 | 3_1:-57547844 | Msa0364480:CDS |
| AGATTTGGTTTGAAAGGGGT+TGG | 0.435761 | 3_1:-57548380 | Msa0364480:CDS |
| AGAGAAAGTGGACTGAAATC+AGG | 0.441039 | 3_1:-57547525 | Msa0364480:CDS |
| TGGTGAGATTTGGTTTGAAA+GGG | 0.445670 | 3_1:-57548385 | Msa0364480:CDS |
| AAAGAACTTCATCAATGAAT+CGG | 0.459762 | 3_1:-57547932 | Msa0364480:CDS |
| GCCGTCGCCTTTCCGCGGGC+TGG | 0.462371 | 3_1:-57547560 | Msa0364480:CDS |
| AGTATGTGATTCTGCAGATT+GGG | 0.463556 | 3_1:-57553914 | Msa0364480:CDS |
| ATGGTGAGATTTGGTTTGAA+AGG | 0.464155 | 3_1:-57548386 | Msa0364480:CDS |
| TCAGGAGTCTTTATCACCAC+TGG | 0.464260 | 3_1:+57548444 | None:intergenic |
| AAGTTTGATGTACACATACT+TGG | 0.471543 | 3_1:-57548288 | Msa0364480:CDS |
| ACTTCAAACAGATACATTAA+CGG | 0.476013 | 3_1:+57553713 | None:intergenic |
| AGAATGTGATGCTGCTGATT+GGG | 0.480788 | 3_1:-57547632 | Msa0364480:CDS |
| AAGAATGTGATGCTGCTGAT+TGG | 0.482287 | 3_1:-57547633 | Msa0364480:CDS |
| TACTTATTTGCAAGAGAAAG+TGG | 0.484810 | 3_1:-57547537 | Msa0364480:CDS |
| TCATCTGGAAGCAAATCAAC+TGG | 0.487387 | 3_1:-57547829 | Msa0364480:intron |
| TTGGTGGTGTTTGAATATAA+AGG | 0.491592 | 3_1:-57548318 | Msa0364480:CDS |
| TAAAGGGGTTATTGAGAACA+AGG | 0.498536 | 3_1:-57547658 | Msa0364480:CDS |
| TGCAGATTGGGAAAAGATCA+TGG | 0.498577 | 3_1:-57553902 | Msa0364480:CDS |
| GCCAAAGGATGTTAGAGCTC+AGG | 0.500995 | 3_1:-57547910 | Msa0364480:CDS |
| CTAACTTTCTTGTGTGGTCG+AGG | 0.505612 | 3_1:+57548117 | None:intergenic |
| TCTTGGACATGGCTGTTTGG+TGG | 0.505898 | 3_1:-57548334 | Msa0364480:CDS |
| AAATGGCCGTCGCCTTTCCG+CGG | 0.508666 | 3_1:-57547565 | Msa0364480:CDS |
| GCCAAAAGATGCTAGAGCTC+AGG | 0.513948 | 3_1:-57554178 | Msa0364480:CDS |
| CCAGCTTACTATCTACTGTA+TGG | 0.515143 | 3_1:+57554097 | None:intergenic |
| AATGGTTTCTATCTATCGGC+GGG | 0.522564 | 3_1:-57553846 | Msa0364480:CDS |
| GAGTATGTGATTCTGCAGAT+TGG | 0.526064 | 3_1:-57553915 | Msa0364480:CDS |
| ACCAGCCCGCGGAAAGGCGA+CGG | 0.528367 | 3_1:+57547559 | None:intergenic |
| AATGGCCGTCGCCTTTCCGC+GGG | 0.545483 | 3_1:-57547564 | Msa0364480:CDS |
| TGTGGTCGAGGAGAAACAAA+AGG | 0.547165 | 3_1:+57548129 | None:intergenic |
| GTTTCTATCTATCGGCGGGT+TGG | 0.552671 | 3_1:-57553842 | Msa0364480:CDS |
| ACTTCACACTCTTTCATCCA+TGG | 0.552746 | 3_1:-57548867 | Msa0364480:CDS |
| AAGTATGTGTACATCAAACT+TGG | 0.555627 | 3_1:+57548290 | None:intergenic |
| TGTATGAGAACTGTGAAGAA+AGG | 0.560242 | 3_1:+57547858 | None:intergenic |
| AGCGAAAGTGAACTGCAACC+AGG | 0.561940 | 3_1:-57553807 | Msa0364480:CDS |
| TCAAAGACACAAACATCTCC+TGG | 0.563620 | 3_1:+57553789 | None:intergenic |
| TGAATGGCTGAATCGGAAGA+AGG | 0.566200 | 3_1:-57548166 | Msa0364480:CDS |
| CATAGAATTTCCTCTAGCCA+TGG | 0.569082 | 3_1:+57548850 | None:intergenic |
| AAATGGTTTCTATCTATCGG+CGG | 0.576380 | 3_1:-57553847 | Msa0364480:CDS |
| TGCTGATTGGGAAAAGATCA+TGG | 0.586680 | 3_1:-57547620 | Msa0364480:CDS |
| ATAAGTACCAGCCCGCGGAA+AGG | 0.595441 | 3_1:+57547553 | None:intergenic |
| TTCATCAATGAATCGGCCAA+AGG | 0.600573 | 3_1:-57547925 | Msa0364480:CDS |
| CCATACAGTAGATAGTAAGC+TGG | 0.603183 | 3_1:-57554097 | Msa0364480:intron |
| TTACTATCTACTGTATGGTG+AGG | 0.604910 | 3_1:+57554102 | None:intergenic |
| AGGAGTTATTGAGAACAAAG+AGG | 0.607683 | 3_1:-57553937 | Msa0364480:CDS |
| TTTACAAAGAGACATGGAGT+TGG | 0.622876 | 3_1:-57548477 | Msa0364480:CDS |
| AAACCTCTAACTTTCTTGTG+TGG | 0.625711 | 3_1:+57548111 | None:intergenic |
| GAAAATTACTCTCTTGGACA+TGG | 0.632483 | 3_1:-57548345 | Msa0364480:CDS |
| GGTGAGATTTGGTTTGAAAG+GGG | 0.635152 | 3_1:-57548384 | Msa0364480:CDS |
| ATGGATGAAAGAGTGTGAAG+TGG | 0.643352 | 3_1:+57548869 | None:intergenic |
| TATATTGCACACATATACGC+AGG | 0.645825 | 3_1:-57554243 | Msa0364480:CDS |
| TGCAAATAAGTACCAGCCCG+CGG | 0.652502 | 3_1:+57547548 | None:intergenic |
| ACTCTTTCATCCATGGCTAG+AGG | 0.653576 | 3_1:-57548860 | Msa0364480:CDS |
| AGAAAGTTTACAAAGAGACA+TGG | 0.659306 | 3_1:-57548483 | Msa0364480:CDS |
| AGTTGGTCTATCAAATCCAG+TGG | 0.699067 | 3_1:-57548460 | Msa0364480:CDS |
| ACACATACTTGGCCAGAATG+CGG | 0.704931 | 3_1:-57548277 | Msa0364480:CDS |
| TGTGAAGAAAGGATTGCATG+AGG | 0.721141 | 3_1:+57547869 | None:intergenic |
| GAAATTGATCTGTTCTAACG+AGG | 0.726190 | 3_1:-57553874 | Msa0364480:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTGATAACAATTAATT+TGG | + | chr3_1:57548235-57548254 | None:intergenic | 10.0% |
| !! | ATTAATTGTTATCAAAATAA+TGG | - | chr3_1:57548236-57548255 | Msa0364480:CDS | 10.0% |
| !!! | ATTAAAGCTTTTAAAAAATT+TGG | + | chr3_1:57548371-57548390 | None:intergenic | 10.0% |
| !!! | TTTATTTTTTGACAAAATTT+TGG | - | chr3_1:57548417-57548436 | Msa0364480:CDS | 10.0% |
| !!! | AGTTTAATTCTTTTTTTTTT+TGG | + | chr3_1:57548617-57548636 | None:intergenic | 10.0% |
| !! | TGTAAAAAGATAAAATATTA+CGG | - | chr3_1:57548869-57548888 | Msa0364480:CDS | 10.0% |
| !! | CTATGAATAATATTAAATTT+AGG | + | chr3_1:57550217-57550236 | None:intergenic | 10.0% |
| !!! | ATTTATTATTTTAGATATGT+AGG | + | chr3_1:57550778-57550797 | None:intergenic | 10.0% |
| !!! | TGTCAAAAAAAAAAAAATTT+TGG | - | chr3_1:57552054-57552073 | Msa0364480:intron | 10.0% |
| !!! | GTCAAAAAAAAAAAAATTTT+GGG | - | chr3_1:57552055-57552074 | Msa0364480:intron | 10.0% |
| !!! | CTTTTTTTTTTTTTTTTGAA+GGG | + | chr3_1:57552142-57552161 | None:intergenic | 10.0% |
| !!! | TCTTTTTTTTTTTTTTTTGA+AGG | + | chr3_1:57552143-57552162 | None:intergenic | 10.0% |
| !!! | TAGCATAATATAATTTTTTT+CGG | - | chr3_1:57552236-57552255 | Msa0364480:intron | 10.0% |
| !!! | CTGAAATATTTTTTATTATA+AGG | + | chr3_1:57552502-57552521 | None:intergenic | 10.0% |
| !! | ATAATAAAAAATATTTCAGA+AGG | - | chr3_1:57552503-57552522 | Msa0364480:intron | 10.0% |
| !! | ATATATTATAGTGATTGATA+AGG | - | chr3_1:57547714-57547733 | Msa0364480:intron | 15.0% |
| !!! | AGCTTTAATAATGAATAATT+TGG | - | chr3_1:57548382-57548401 | Msa0364480:CDS | 15.0% |
| !! | AAAATAGTTTAATTCTAACA+TGG | + | chr3_1:57548587-57548606 | None:intergenic | 15.0% |
| !!! | AATCTTAGCTTTTTTTTTTT+TGG | + | chr3_1:57548784-57548803 | None:intergenic | 15.0% |
| !! | GTAAAAAGATAAAATATTAC+GGG | - | chr3_1:57548870-57548889 | Msa0364480:CDS | 15.0% |
| !! | GGTTAATTGATATATTTATT+TGG | + | chr3_1:57549379-57549398 | None:intergenic | 15.0% |
| !!! | GTTTAAAATATGATTTCATT+TGG | + | chr3_1:57551265-57551284 | None:intergenic | 15.0% |
| !!! | GAAATCATATTTTAAACTTA+TGG | - | chr3_1:57551268-57551287 | Msa0364480:intron | 15.0% |
| !!! | TTTTTGGTTGTTTAATATTT+TGG | + | chr3_1:57551555-57551574 | None:intergenic | 15.0% |
| !!! | AGCATAATATAATTTTTTTC+GGG | - | chr3_1:57552237-57552256 | Msa0364480:intron | 15.0% |
| !!! | ATATCAATTTTTTGTTGAAA+TGG | - | chr3_1:57552345-57552364 | Msa0364480:intron | 15.0% |
| !! | GAGTATTAGTATATTTAAAA+GGG | + | chr3_1:57552583-57552602 | None:intergenic | 15.0% |
| !! | TGAGTATTAGTATATTTAAA+AGG | + | chr3_1:57552584-57552603 | None:intergenic | 15.0% |
| !! | CTAAAGTAAATAATACTAAT+AGG | + | chr3_1:57552950-57552969 | None:intergenic | 15.0% |
| !!! | GCTAGAAATTTTATTATATA+TGG | - | chr3_1:57553082-57553101 | Msa0364480:intron | 15.0% |
| !! | ATTTATTGGAAAAAAATCAA+TGG | - | chr3_1:57553305-57553324 | Msa0364480:intron | 15.0% |
| !! | TTTACAAGAATTGTGAAAAA+AGG | + | chr3_1:57547587-57547606 | None:intergenic | 20.0% |
| !! | TAAAAATGGTTTCTATCTAT+CGG | - | chr3_1:57547860-57547879 | Msa0364480:CDS | 20.0% |
| !! | GTTCATTTAGAAATATTTGA+AGG | - | chr3_1:57548122-57548141 | Msa0364480:CDS | 20.0% |
| !! | ACTCTTATTAAAATCATGTT+TGG | - | chr3_1:57548468-57548487 | Msa0364480:CDS | 20.0% |
| !! | TATGAGTAAAATGAAATGAA+TGG | - | chr3_1:57548654-57548673 | Msa0364480:intron | 20.0% |
| !! | TAAAATGAAATGAATGGTAA+TGG | - | chr3_1:57548660-57548679 | Msa0364480:intron | 20.0% |
| !!! | GCTTTTTTTTTTTTGGATAA+AGG | + | chr3_1:57548777-57548796 | None:intergenic | 20.0% |
| !!! | ATTTTCATGAAATTAATCCT+AGG | - | chr3_1:57548986-57549005 | Msa0364480:intron | 20.0% |
| !! | CTTGAAAAATAATGCAATAT+AGG | + | chr3_1:57549072-57549091 | None:intergenic | 20.0% |
| !! | ATCAATTAACCTAATAATGA+TGG | - | chr3_1:57549388-57549407 | Msa0364480:intron | 20.0% |
| !! | ATTTGTGATGTTTATAACTT+AGG | + | chr3_1:57549434-57549453 | None:intergenic | 20.0% |
| !! | AAATGCACAATTCTAAATTT+AGG | - | chr3_1:57549502-57549521 | Msa0364480:intron | 20.0% |
| !! | AATGCACAATTCTAAATTTA+GGG | - | chr3_1:57549503-57549522 | Msa0364480:intron | 20.0% |
| !! | AACAATTCTAAATTGTAGTT+TGG | - | chr3_1:57549554-57549573 | Msa0364480:intron | 20.0% |
| !!! | CATTGAGTTTTTTCTTATTA+AGG | + | chr3_1:57550280-57550299 | None:intergenic | 20.0% |
| !! | CTTAATAAGAAAAAACTCAA+TGG | - | chr3_1:57550278-57550297 | Msa0364480:intron | 20.0% |
| !!! | TTTTAACAAGAGAGATATAT+CGG | + | chr3_1:57550338-57550357 | None:intergenic | 20.0% |
| !! | TCCTCAATTGAATTAAAATA+TGG | - | chr3_1:57550836-57550855 | Msa0364480:intron | 20.0% |
| !!! | ACCATATTTTAATTCAATTG+AGG | + | chr3_1:57550840-57550859 | None:intergenic | 20.0% |
| !! | ACAAATAATGAAGAACTAAT+TGG | + | chr3_1:57550872-57550891 | None:intergenic | 20.0% |
| !! | TATATAACAAGATGCTAAAA+TGG | + | chr3_1:57550982-57551001 | None:intergenic | 20.0% |
| !!! | ATCAACTTTTAAAAACTCTT+CGG | - | chr3_1:57551091-57551110 | Msa0364480:intron | 20.0% |
| !!! | TTCTCAAATTTATTTCTGAA+TGG | - | chr3_1:57551117-57551136 | Msa0364480:intron | 20.0% |
| !!! | ACAAATTTTGCTAGATTTAT+AGG | - | chr3_1:57551511-57551530 | Msa0364480:intron | 20.0% |
| !! | AGAACAATAATAGAAGAATT+TGG | - | chr3_1:57551589-57551608 | Msa0364480:intron | 20.0% |
| !!! | TAATAGAAGAATTTGGAATT+TGG | - | chr3_1:57551596-57551615 | Msa0364480:intron | 20.0% |
| !!! | AATAGAAGAATTTGGAATTT+GGG | - | chr3_1:57551597-57551616 | Msa0364480:intron | 20.0% |
| !!! | GTTTTTTCTAAATCTTATAG+CGG | - | chr3_1:57551753-57551772 | Msa0364480:intron | 20.0% |
| !! | TAAAAATTAAAGAACTCCTT+TGG | + | chr3_1:57553195-57553214 | None:intergenic | 20.0% |
| !! | ACACTAAATGGAAAATTTAT+TGG | - | chr3_1:57553291-57553310 | Msa0364480:intron | 20.0% |
| !!! | AGAATGTACCAAATTTTAAA+GGG | - | chr3_1:57554036-57554055 | Msa0364480:intron | 20.0% |
| !! | ATTGATAAACAAGAAAGATT+TGG | - | chr3_1:57554226-57554245 | Msa0364480:CDS | 20.0% |
| ! | AAAGAACTTCATCAATGAAT+TGG | - | chr3_1:57547510-57547529 | Msa0364480:CDS | 25.0% |
| ! | AAGAATTGTGAAAAAAGGAT+TGG | + | chr3_1:57547582-57547601 | None:intergenic | 25.0% |
| ! | GTATTTATACATAGAATTGC+AGG | + | chr3_1:57547672-57547691 | None:intergenic | 25.0% |
| ! | TATGTAACTGCAGATTTAAA+AGG | - | chr3_1:57547753-57547772 | Msa0364480:intron | 25.0% |
| ! | AAAGTTCATGTCTTCAAAAA+AGG | - | chr3_1:57547972-57547991 | Msa0364480:intron | 25.0% |
| ! | AAGTTCATGTCTTCAAAAAA+GGG | - | chr3_1:57547973-57547992 | Msa0364480:intron | 25.0% |
| ! | ACTTCAAACAGATACATTAA+CGG | + | chr3_1:57548000-57548019 | None:intergenic | 25.0% |
| ! | AAAATTAGAGCCAAAAAAGA+AGG | + | chr3_1:57548101-57548120 | None:intergenic | 25.0% |
| ! | CAGTTCATAAATTTGTGAAA+TGG | - | chr3_1:57548261-57548280 | Msa0364480:CDS | 25.0% |
| !!! | TGGTTCAGTTAATTTTGATA+TGG | - | chr3_1:57548281-57548300 | Msa0364480:CDS | 25.0% |
| !!! | CAGTTAATTTTGATATGGTT+CGG | - | chr3_1:57548286-57548305 | Msa0364480:CDS | 25.0% |
| !!! | AAGTAAGAATTTTGGCTAAA+TGG | + | chr3_1:57548825-57548844 | None:intergenic | 25.0% |
| !! | GAAGCAAAAAGTAAGAATTT+TGG | + | chr3_1:57548833-57548852 | None:intergenic | 25.0% |
| !!! | AAATTCTTACTTTTTGCTTC+AGG | - | chr3_1:57548833-57548852 | Msa0364480:CDS | 25.0% |
| ! | AAATGGGAATTGAGTATTAA+GGG | - | chr3_1:57548959-57548978 | Msa0364480:intron | 25.0% |
| ! | GATACCAATAACAATGAATA+AGG | - | chr3_1:57549175-57549194 | Msa0364480:intron | 25.0% |
| ! | ATGACCTTATTCATTGTTAT+TGG | + | chr3_1:57549182-57549201 | None:intergenic | 25.0% |
| ! | TGTGATCTGATATTTATACA+AGG | + | chr3_1:57549296-57549315 | None:intergenic | 25.0% |
| ! | TACTTTCTACCATCATTATT+AGG | + | chr3_1:57549400-57549419 | None:intergenic | 25.0% |
| !! | ACAATTCTAAATTTAGGGTT+TGG | - | chr3_1:57549508-57549527 | Msa0364480:intron | 25.0% |
| ! | ATAACAAAGAAAAACAAACC+TGG | - | chr3_1:57549655-57549674 | Msa0364480:intron | 25.0% |
| !!! | AGAATGGTGTTATTTTTGTT+AGG | + | chr3_1:57549876-57549895 | None:intergenic | 25.0% |
| !!! | AAATAAAATAATGGGCAGAA+TGG | + | chr3_1:57549892-57549911 | None:intergenic | 25.0% |
| ! | TAGCATTCTCCTATTAAATA+TGG | + | chr3_1:57550033-57550052 | None:intergenic | 25.0% |
| ! | TCTACAAATAGAAATTGTCT+TGG | + | chr3_1:57550155-57550174 | None:intergenic | 25.0% |
| ! | AATGGAAAAAAAATTAGCGA+AGG | - | chr3_1:57550296-57550315 | Msa0364480:intron | 25.0% |
| ! | TCTTATCAGAGATAATTGTT+AGG | + | chr3_1:57550441-57550460 | None:intergenic | 25.0% |
| ! | AACAATTATCTCTGATAAGA+TGG | - | chr3_1:57550441-57550460 | Msa0364480:intron | 25.0% |
| ! | CAATCAAACATTAATGTTGA+TGG | - | chr3_1:57550740-57550759 | Msa0364480:intron | 25.0% |
| ! | GATAACATAAGTAACTAACA+AGG | - | chr3_1:57550802-57550821 | Msa0364480:intron | 25.0% |
| ! | TATTGTGACTTTACAACTAT+TGG | - | chr3_1:57550920-57550939 | Msa0364480:intron | 25.0% |
| ! | GATGCTAAAATGGTTATATA+TGG | + | chr3_1:57550972-57550991 | None:intergenic | 25.0% |
| ! | AGAAATGAGATGAAATATGT+AGG | + | chr3_1:57551059-57551078 | None:intergenic | 25.0% |
| !!! | TCAACTTTTAAAAACTCTTC+GGG | - | chr3_1:57551092-57551111 | Msa0364480:intron | 25.0% |
| ! | TCCATGTTATTGTAAATTAG+AGG | - | chr3_1:57551397-57551416 | Msa0364480:intron | 25.0% |
| ! | TCCTCTAATTTACAATAACA+TGG | + | chr3_1:57551401-57551420 | None:intergenic | 25.0% |
| ! | AAACAACCAAAAAAAGTTGT+TGG | - | chr3_1:57551562-57551581 | Msa0364480:intron | 25.0% |
| !! | ATAGAAGAATTTGGAATTTG+GGG | - | chr3_1:57551598-57551617 | Msa0364480:intron | 25.0% |
| ! | ATAATAGATCCAACATAGTT+GGG | + | chr3_1:57551829-57551848 | None:intergenic | 25.0% |
| ! | AATAATAGATCCAACATAGT+TGG | + | chr3_1:57551830-57551849 | None:intergenic | 25.0% |
| ! | AACTATGTTGGATCTATTAT+TGG | - | chr3_1:57551829-57551848 | Msa0364480:intron | 25.0% |
| ! | TTCTTCAATCCATATACAAT+CGG | + | chr3_1:57551962-57551981 | None:intergenic | 25.0% |
| ! | AAATTTCATTAGCAAAAGTC+TGG | + | chr3_1:57552027-57552046 | None:intergenic | 25.0% |
| ! | ACGTCAATTTAAATATGATG+TGG | + | chr3_1:57552101-57552120 | None:intergenic | 25.0% |
| ! | GATCAATACATTCTCAAATA+AGG | + | chr3_1:57552443-57552462 | None:intergenic | 25.0% |
| !!! | GCTTTACTTATGTCATTTTT+TGG | - | chr3_1:57552535-57552554 | Msa0364480:intron | 25.0% |
| !!! | TTACTTATGTCATTTTTTGG+AGG | - | chr3_1:57552538-57552557 | Msa0364480:intron | 25.0% |
| ! | AAACACGTTATTAATACCAA+TGG | - | chr3_1:57552618-57552637 | Msa0364480:intron | 25.0% |
| ! | ATAGATGTAATAATGACACT+AGG | - | chr3_1:57552678-57552697 | Msa0364480:intron | 25.0% |
| ! | AAAAAATCAATGGTGAGATT+TGG | - | chr3_1:57553315-57553334 | Msa0364480:intron | 25.0% |
| ! | TTTACTGAAAATTACTCTCT+TGG | - | chr3_1:57553359-57553378 | Msa0364480:intron | 25.0% |
| ! | AAAGAACTTCATCAATGAAT+CGG | - | chr3_1:57547510-57547529 | Msa0364480:CDS | 25.0% |
| !! | CAGAATGTACCAAATTTTAA+AGG | - | chr3_1:57554035-57554054 | Msa0364480:intron | 25.0% |
| !!! | GAATGTACCAAATTTTAAAG+GGG | - | chr3_1:57554037-57554056 | Msa0364480:intron | 25.0% |
| !!! | TCAATAACCCCTTTAAAATT+TGG | + | chr3_1:57554047-57554066 | None:intergenic | 25.0% |
| TATACATAGAATTGCAGGAA+TGG | + | chr3_1:57547667-57547686 | None:intergenic | 30.0% | |
| !!! | AATTTTGATATGGTTCGGTT+CGG | - | chr3_1:57548291-57548310 | Msa0364480:CDS | 30.0% |
| TCGTAAAACAATTGAAGACA+TGG | - | chr3_1:57548931-57548950 | Msa0364480:intron | 30.0% | |
| AAAACAATTGAAGACATGGA+AGG | - | chr3_1:57548935-57548954 | Msa0364480:intron | 30.0% | |
| AAACAATTGAAGACATGGAA+GGG | - | chr3_1:57548936-57548955 | Msa0364480:intron | 30.0% | |
| GAAATGGGAATTGAGTATTA+AGG | - | chr3_1:57548958-57548977 | Msa0364480:intron | 30.0% | |
| ATACAATATCTCGTATACCT+AGG | + | chr3_1:57549006-57549025 | None:intergenic | 30.0% | |
| AGGGTTTGGAAAATCAAAAT+TGG | - | chr3_1:57549522-57549541 | Msa0364480:intron | 30.0% | |
| GGGTTTGGAAAATCAAAATT+GGG | - | chr3_1:57549523-57549542 | Msa0364480:intron | 30.0% | |
| GGTTTGGAAAATCAAAATTG+GGG | - | chr3_1:57549524-57549543 | Msa0364480:intron | 30.0% | |
| !! | GCTGCTTGTTATTTGTTAAT+GGG | + | chr3_1:57549611-57549630 | None:intergenic | 30.0% |
| !! | TGCTGCTTGTTATTTGTTAA+TGG | + | chr3_1:57549612-57549631 | None:intergenic | 30.0% |
| TTTAAGTAGGAATGAGCTAT+TGG | - | chr3_1:57549914-57549933 | Msa0364480:intron | 30.0% | |
| TTAAGTAGGAATGAGCTATT+GGG | - | chr3_1:57549915-57549934 | Msa0364480:intron | 30.0% | |
| AATAGGAGAATAGAAAGTCT+AGG | - | chr3_1:57549990-57550009 | Msa0364480:intron | 30.0% | |
| ATAGGAGAATAGAAAGTCTA+GGG | - | chr3_1:57549991-57550010 | Msa0364480:intron | 30.0% | |
| ACATCCACACCATATTTAAT+AGG | - | chr3_1:57550021-57550040 | Msa0364480:intron | 30.0% | |
| TTCTCCTATTAAATATGGTG+TGG | + | chr3_1:57550028-57550047 | None:intergenic | 30.0% | |
| !!! | TTTCTCTCACAGGATTTTTT+TGG | + | chr3_1:57550367-57550386 | None:intergenic | 30.0% |
| !! | AGAGATAATTGTTAGGTTGA+GGG | + | chr3_1:57550434-57550453 | None:intergenic | 30.0% |
| CATGTTGAAAGGATATTACA+GGG | + | chr3_1:57550635-57550654 | None:intergenic | 30.0% | |
| GAATATAACACCATGTTGAA+AGG | + | chr3_1:57550646-57550665 | None:intergenic | 30.0% | |
| GCATAATAGAAGAAACATGT+GGG | + | chr3_1:57550704-57550723 | None:intergenic | 30.0% | |
| TTTCTGAATGGACAAATGAT+TGG | - | chr3_1:57551129-57551148 | Msa0364480:intron | 30.0% | |
| TGGTTCTTCTAACTTATATG+AGG | - | chr3_1:57551288-57551307 | Msa0364480:intron | 30.0% | |
| TCTAACTTATATGAGGATCA+AGG | - | chr3_1:57551295-57551314 | Msa0364480:intron | 30.0% | |
| !!! | CTTTAGCCAACAACTTTTTT+TGG | + | chr3_1:57551571-57551590 | None:intergenic | 30.0% |
| TAAGATTCTTGCATGTTAGA+CGG | - | chr3_1:57551887-57551906 | Msa0364480:intron | 30.0% | |
| TTCATAATCCCGATTGTATA+TGG | - | chr3_1:57551950-57551969 | Msa0364480:intron | 30.0% | |
| TCTTCAATCCATATACAATC+GGG | + | chr3_1:57551961-57551980 | None:intergenic | 30.0% | |
| CAATACATTCTCAAATAAGG+AGG | + | chr3_1:57552440-57552459 | None:intergenic | 30.0% | |
| AGGACTACGCAAATAAAAAA+GGG | + | chr3_1:57552482-57552501 | None:intergenic | 30.0% | |
| AAGGACTACGCAAATAAAAA+AGG | + | chr3_1:57552483-57552502 | None:intergenic | 30.0% | |
| CATATCTGTAGTATTTCCAT+TGG | + | chr3_1:57552637-57552656 | None:intergenic | 30.0% | |
| ATACTACAGATATGAAGAGT+CGG | - | chr3_1:57552643-57552662 | Msa0364480:intron | 30.0% | |
| ATATTTAAGCTAGCAAGCAA+GGG | + | chr3_1:57552770-57552789 | None:intergenic | 30.0% | |
| TATATTTAAGCTAGCAAGCA+AGG | + | chr3_1:57552771-57552790 | None:intergenic | 30.0% | |
| !! | ATGATTTTGAAGAAACGGAT+GGG | + | chr3_1:57552889-57552908 | None:intergenic | 30.0% |
| !! | GAAGGATGATTTTGAAGAAA+CGG | + | chr3_1:57552894-57552913 | None:intergenic | 30.0% |
| TCCTTCAAACTAATCTTCAT+AGG | - | chr3_1:57552908-57552927 | Msa0364480:intron | 30.0% | |
| !! | TCCTATGAAGATTAGTTTGA+AGG | + | chr3_1:57552912-57552931 | None:intergenic | 30.0% |
| TGTCTCTTTGTAAACTTTCT+TGG | + | chr3_1:57553227-57553246 | None:intergenic | 30.0% | |
| AGAAAGTTTACAAAGAGACA+TGG | - | chr3_1:57553227-57553246 | Msa0364480:intron | 30.0% | |
| ! | ATTTTCCATTTAGTGTCATC+AGG | + | chr3_1:57553287-57553306 | None:intergenic | 30.0% |
| !! | TTGGTGGTGTTTGAATATAA+AGG | - | chr3_1:57553392-57553411 | Msa0364480:intron | 30.0% |
| AAGTATGTGTACATCAAACT+TGG | + | chr3_1:57553423-57553442 | None:intergenic | 30.0% | |
| AAGTTTGATGTACACATACT+TGG | - | chr3_1:57553422-57553441 | Msa0364480:intron | 30.0% | |
| ! | TGATGAATCAGTTGAGTTTT+TGG | - | chr3_1:57553520-57553539 | Msa0364480:intron | 30.0% |
| TTTCTTTGCAGTATGCATAA+TGG | - | chr3_1:57553638-57553657 | Msa0364480:intron | 30.0% | |
| TTCTTTGCAGTATGCATAAT+GGG | - | chr3_1:57553639-57553658 | Msa0364480:intron | 30.0% | |
| TACTTATTTGCAAGAGAAAG+TGG | - | chr3_1:57554173-57554192 | Msa0364480:CDS | 30.0% | |
| TATATTGCACACATATACGC+AGG | - | chr3_1:57547467-57547486 | Msa0364480:CDS | 35.0% | |
| TTACTATCTACTGTATGGTG+AGG | + | chr3_1:57547611-57547630 | None:intergenic | 35.0% | |
| AGGAGTTATTGAGAACAAAG+AGG | - | chr3_1:57547773-57547792 | Msa0364480:intron | 35.0% | |
| AGTATGTGATTCTGCAGATT+GGG | - | chr3_1:57547796-57547815 | Msa0364480:intron | 35.0% | |
| GAAATTGATCTGTTCTAACG+AGG | - | chr3_1:57547836-57547855 | Msa0364480:CDS | 35.0% | |
| TGTTCTAACGAGGCTAAAAA+TGG | - | chr3_1:57547846-57547865 | Msa0364480:CDS | 35.0% | |
| AAATGGTTTCTATCTATCGG+CGG | - | chr3_1:57547863-57547882 | Msa0364480:CDS | 35.0% | |
| CACTTTCCTTTCCATCAAAT+AGG | - | chr3_1:57548053-57548072 | Msa0364480:intron | 35.0% | |
| ACTTCACCTATTTGATGGAA+AGG | + | chr3_1:57548062-57548081 | None:intergenic | 35.0% | |
| !!! | GTAACCTTCACCTTCTTTTT+TGG | - | chr3_1:57548088-57548107 | Msa0364480:intron | 35.0% |
| ! | AAATTTGGAATGCACGAGTA+GGG | + | chr3_1:57548356-57548375 | None:intergenic | 35.0% |
| ! | AAAATTTGGAATGCACGAGT+AGG | + | chr3_1:57548357-57548376 | None:intergenic | 35.0% |
| TATAGAAGAGCAGAGAGAAA+GGG | - | chr3_1:57549028-57549047 | Msa0364480:intron | 35.0% | |
| AGATCACAATTTGCAGTGAA+GGG | - | chr3_1:57549308-57549327 | Msa0364480:intron | 35.0% | |
| CAATTCTGAGCATAACTTCA+TGG | - | chr3_1:57549343-57549362 | Msa0364480:intron | 35.0% | |
| ! | GTTAATGGGTGAATCAATCA+AGG | + | chr3_1:57549597-57549616 | None:intergenic | 35.0% |
| ACAAAGAAAAACAAACCTGG+TGG | - | chr3_1:57549658-57549677 | Msa0364480:intron | 35.0% | |
| !!! | CTCACAGGATTTTTTTGGTA+TGG | + | chr3_1:57550362-57550381 | None:intergenic | 35.0% |
| AATCCTGTGAGAGAAATTCA+TGG | - | chr3_1:57550371-57550390 | Msa0364480:intron | 35.0% | |
| TGAGAGAAATTCATGGTGAA+GGG | - | chr3_1:57550378-57550397 | Msa0364480:intron | 35.0% | |
| ! | CAGAGATAATTGTTAGGTTG+AGG | + | chr3_1:57550435-57550454 | None:intergenic | 35.0% |
| CCATGTTGAAAGGATATTAC+AGG | + | chr3_1:57550636-57550655 | None:intergenic | 35.0% | |
| CCTGTAATATCCTTTCAACA+TGG | - | chr3_1:57550633-57550652 | Msa0364480:intron | 35.0% | |
| CGCATAATAGAAGAAACATG+TGG | + | chr3_1:57550705-57550724 | None:intergenic | 35.0% | |
| ! | CAGGCACATTTGAGATTTAT+TGG | - | chr3_1:57551164-57551183 | Msa0364480:intron | 35.0% |
| CAATATCAGATTGTCCAAGA+GGG | - | chr3_1:57551187-57551206 | Msa0364480:intron | 35.0% | |
| ATCAAAATAGATGTCCCTCT+TGG | + | chr3_1:57551204-57551223 | None:intergenic | 35.0% | |
| ! | GAATTTGGAATTTGGGGTAT+TGG | - | chr3_1:57551604-57551623 | Msa0364480:intron | 35.0% |
| GTTGTTGTGAGAGATTATGA+AGG | - | chr3_1:57551628-57551647 | Msa0364480:intron | 35.0% | |
| !! | GAGAGATTATGAAGGTATTG+TGG | - | chr3_1:57551636-57551655 | Msa0364480:intron | 35.0% |
| ! | CTTTTCATTACCAGATTCAG+AGG | - | chr3_1:57551681-57551700 | Msa0364480:intron | 35.0% |
| ! | TAGCAGAAGCTTTAGTTATG+CGG | - | chr3_1:57551704-57551723 | Msa0364480:intron | 35.0% |
| AAGATTCTTGCATGTTAGAC+GGG | - | chr3_1:57551888-57551907 | Msa0364480:intron | 35.0% | |
| TAAATCATAAGCCAAGACTG+CGG | + | chr3_1:57552001-57552020 | None:intergenic | 35.0% | |
| CCACTCACAATAAAACCATT+AGG | + | chr3_1:57552385-57552404 | None:intergenic | 35.0% | |
| !!! | CCTAATGGTTTTATTGTGAG+TGG | - | chr3_1:57552382-57552401 | Msa0364480:intron | 35.0% |
| !!! | ATGTCATTTTTTGGAGGCAT+TGG | - | chr3_1:57552544-57552563 | Msa0364480:intron | 35.0% |
| ATGTAATAATGACACTAGGC+AGG | - | chr3_1:57552682-57552701 | Msa0364480:intron | 35.0% | |
| ACCATCATATAGTCATTGCA+GGG | - | chr3_1:57552738-57552757 | Msa0364480:intron | 35.0% | |
| ATATAGTCATTGCAGGGTAA+TGG | - | chr3_1:57552744-57552763 | Msa0364480:intron | 35.0% | |
| !! | GATGATTTTGAAGAAACGGA+TGG | + | chr3_1:57552890-57552909 | None:intergenic | 35.0% |
| ! | ACCTTTTTCTTAGTGACCAA+AGG | - | chr3_1:57553176-57553195 | Msa0364480:intron | 35.0% |
| TCCTTTGGTCACTAAGAAAA+AGG | + | chr3_1:57553180-57553199 | None:intergenic | 35.0% | |
| TTTACAAAGAGACATGGAGT+TGG | - | chr3_1:57553233-57553252 | Msa0364480:intron | 35.0% | |
| !! | ATGGTGAGATTTGGTTTGAA+AGG | - | chr3_1:57553324-57553343 | Msa0364480:intron | 35.0% |
| !! | TGGTGAGATTTGGTTTGAAA+GGG | - | chr3_1:57553325-57553344 | Msa0364480:intron | 35.0% |
| GAAAATTACTCTCTTGGACA+TGG | - | chr3_1:57553365-57553384 | Msa0364480:intron | 35.0% | |
| !! | AATCTATTTCTACCGCATTC+TGG | + | chr3_1:57553448-57553467 | None:intergenic | 35.0% |
| !! | CAGTTGAGTTTTTGGATGAA+TGG | - | chr3_1:57553528-57553547 | Msa0364480:intron | 35.0% |
| ! | TTTTGGATGAATGGCTGAAT+CGG | - | chr3_1:57553537-57553556 | Msa0364480:intron | 35.0% |
| AAACCTCTAACTTTCTTGTG+TGG | + | chr3_1:57553602-57553621 | None:intergenic | 35.0% | |
| ACACAAGAAAGTTAGAGGTT+TGG | - | chr3_1:57553601-57553620 | Msa0364480:intron | 35.0% | |
| ! | AGAAAGTTAGAGGTTTGGTT+TGG | - | chr3_1:57553606-57553625 | Msa0364480:intron | 35.0% |
| TGTGTGCAATGTAAAACTCT+TGG | + | chr3_1:57553728-57553747 | None:intergenic | 35.0% | |
| TACATTGCACACATATATGC+AGG | - | chr3_1:57553735-57553754 | Msa0364480:CDS | 35.0% | |
| TGTATGAGAACTGTGAAGAA+AGG | + | chr3_1:57553855-57553874 | None:intergenic | 35.0% | |
| !! | TGATTTGCTTCCAGATGATT+GGG | + | chr3_1:57553879-57553898 | None:intergenic | 35.0% |
| !! | TTGATTTGCTTCCAGATGAT+TGG | + | chr3_1:57553880-57553899 | None:intergenic | 35.0% |
| TAAAGGGGTTATTGAGAACA+AGG | - | chr3_1:57554052-57554071 | Msa0364480:intron | 35.0% | |
| CGTTCTTATGAGAGCAAAAA+TGG | - | chr3_1:57554128-57554147 | Msa0364480:CDS | 35.0% | |
| CCAGCTTACTATCTACTGTA+TGG | + | chr3_1:57547616-57547635 | None:intergenic | 40.0% | |
| CCATACAGTAGATAGTAAGC+TGG | - | chr3_1:57547613-57547632 | Msa0364480:CDS | 40.0% | |
| GAGTATGTGATTCTGCAGAT+TGG | - | chr3_1:57547795-57547814 | Msa0364480:intron | 40.0% | |
| TGCAGATTGGGAAAAGATCA+TGG | - | chr3_1:57547808-57547827 | Msa0364480:intron | 40.0% | |
| AATGGTTTCTATCTATCGGC+GGG | - | chr3_1:57547864-57547883 | Msa0364480:CDS | 40.0% | |
| TCAAAGACACAAACATCTCC+TGG | + | chr3_1:57547924-57547943 | None:intergenic | 40.0% | |
| GCTTCACTTCACCTATTTGA+TGG | + | chr3_1:57548067-57548086 | None:intergenic | 40.0% | |
| AGAGCCAAAAAAGAAGGTGA+AGG | + | chr3_1:57548095-57548114 | None:intergenic | 40.0% | |
| TTGAAGACATGGAAGGGAAA+TGG | - | chr3_1:57548942-57548961 | Msa0364480:intron | 40.0% | |
| TGAAGACATGGAAGGGAAAT+GGG | - | chr3_1:57548943-57548962 | Msa0364480:intron | 40.0% | |
| GTATAGAAGAGCAGAGAGAA+AGG | - | chr3_1:57549027-57549046 | Msa0364480:intron | 40.0% | |
| CAGAGAGAAAGGGATAAAGA+GGG | - | chr3_1:57549038-57549057 | Msa0364480:intron | 40.0% | |
| TCATTTACTCGTAAGAGCAG+TGG | - | chr3_1:57549198-57549217 | Msa0364480:intron | 40.0% | |
| CCAGGATTTATATAGAGCCT+CGG | - | chr3_1:57549226-57549245 | Msa0364480:intron | 40.0% | |
| ! | TTGCGATAAATTTTTCGCCG+AGG | + | chr3_1:57549246-57549265 | None:intergenic | 40.0% |
| CAGATCACAATTTGCAGTGA+AGG | - | chr3_1:57549307-57549326 | Msa0364480:intron | 40.0% | |
| AAGAAAAACAAACCTGGTGG+AGG | - | chr3_1:57549661-57549680 | Msa0364480:intron | 40.0% | |
| TAGAAACTGAGAGTTGAGAG+AGG | - | chr3_1:57549725-57549744 | Msa0364480:intron | 40.0% | |
| AGAAACTGAGAGTTGAGAGA+GGG | - | chr3_1:57549726-57549745 | Msa0364480:intron | 40.0% | |
| !! | GGGTTATTTCTGAAGGAGAA+GGG | - | chr3_1:57549827-57549846 | Msa0364480:intron | 40.0% |
| TAGGCACGCGTAGTAAAAAT+TGG | + | chr3_1:57549857-57549876 | None:intergenic | 40.0% | |
| TAGGAATGAGCTATTGGGTT+GGG | - | chr3_1:57549920-57549939 | Msa0364480:intron | 40.0% | |
| TTCTATTCTCCTATTCGCCT+GGG | + | chr3_1:57549985-57550004 | None:intergenic | 40.0% | |
| TTTCTATTCTCCTATTCGCC+TGG | + | chr3_1:57549986-57550005 | None:intergenic | 40.0% | |
| AATGCTAACTAGTGCACCAA+GGG | - | chr3_1:57550046-57550065 | Msa0364480:intron | 40.0% | |
| AGATGTTTAACCATTGCCCT+TGG | + | chr3_1:57550065-57550084 | None:intergenic | 40.0% | |
| TCACCATGAATTTCTCTCAC+AGG | + | chr3_1:57550377-57550396 | None:intergenic | 40.0% | |
| GTGAGAGAAATTCATGGTGA+AGG | - | chr3_1:57550377-57550396 | Msa0364480:intron | 40.0% | |
| !! | TGATTGGTCTACCACATTTC+AGG | - | chr3_1:57551145-57551164 | Msa0364480:intron | 40.0% |
| TCTCAAATGTGCCTGAAATG+TGG | + | chr3_1:57551159-57551178 | None:intergenic | 40.0% | |
| GCAATATCAGATTGTCCAAG+AGG | - | chr3_1:57551186-57551205 | Msa0364480:intron | 40.0% | |
| ! | AGAAGCTTTAGTTATGCGGA+AGG | - | chr3_1:57551708-57551727 | Msa0364480:intron | 40.0% |
| ! | GAAGCTTTAGTTATGCGGAA+GGG | - | chr3_1:57551709-57551728 | Msa0364480:intron | 40.0% |
| ! | AAGCTTTAGTTATGCGGAAG+GGG | - | chr3_1:57551710-57551729 | Msa0364480:intron | 40.0% |
| GGAATCAGATGCTTCTAATG+TGG | - | chr3_1:57551774-57551793 | Msa0364480:intron | 40.0% | |
| AGATGCTTCTAATGTGGTTC+AGG | - | chr3_1:57551780-57551799 | Msa0364480:intron | 40.0% | |
| CAACAACATCCCAACTATGT+TGG | - | chr3_1:57551817-57551836 | Msa0364480:intron | 40.0% | |
| TTGAAATGGCCTCGTTGTTA+TGG | - | chr3_1:57552359-57552378 | Msa0364480:intron | 40.0% | |
| !!! | ATTTTTTGGAGGCATTGGAG+AGG | - | chr3_1:57552549-57552568 | Msa0364480:intron | 40.0% |
| TAGGCAGGTAGCTTAATATG+AGG | - | chr3_1:57552697-57552716 | Msa0364480:intron | 40.0% | |
| CTGCAATGACTATATGATGG+TGG | + | chr3_1:57552739-57552758 | None:intergenic | 40.0% | |
| CACCATCATATAGTCATTGC+AGG | - | chr3_1:57552737-57552756 | Msa0364480:intron | 40.0% | |
| ACCCTGCAATGACTATATGA+TGG | + | chr3_1:57552742-57552761 | None:intergenic | 40.0% | |
| ! | ATGGATGAAAGAGTGTGAAG+TGG | + | chr3_1:57552844-57552863 | None:intergenic | 40.0% |
| ACTTCACACTCTTTCATCCA+TGG | - | chr3_1:57552843-57552862 | Msa0364480:intron | 40.0% | |
| CATAGAATTTCCTCTAGCCA+TGG | + | chr3_1:57552863-57552882 | None:intergenic | 40.0% | |
| ! | AGTTGGTCTATCAAATCCAG+TGG | - | chr3_1:57553250-57553269 | Msa0364480:intron | 40.0% |
| AGACTCCTGATGACACTAAA+TGG | - | chr3_1:57553279-57553298 | Msa0364480:intron | 40.0% | |
| !! | GGTGAGATTTGGTTTGAAAG+GGG | - | chr3_1:57553326-57553345 | Msa0364480:intron | 40.0% |
| !! | AGATTTGGTTTGAAAGGGGT+TGG | - | chr3_1:57553330-57553349 | Msa0364480:intron | 40.0% |
| TTCATCAATGAATCGGCCAA+AGG | - | chr3_1:57553785-57553804 | Msa0364480:CDS | 40.0% | |
| TGTGAAGAAAGGATTGCATG+AGG | + | chr3_1:57553844-57553863 | None:intergenic | 40.0% | |
| TCATCTGGAAGCAAATCAAC+TGG | - | chr3_1:57553881-57553900 | Msa0364480:CDS | 40.0% | |
| AAGAATGTGATGCTGCTGAT+TGG | - | chr3_1:57554077-57554096 | Msa0364480:intron | 40.0% | |
| ! | AGAATGTGATGCTGCTGATT+GGG | - | chr3_1:57554078-57554097 | Msa0364480:intron | 40.0% |
| ! | TGCTGATTGGGAAAAGATCA+TGG | - | chr3_1:57554090-57554109 | Msa0364480:intron | 40.0% |
| !! | AGAGAAAGTGGACTGAAATC+AGG | - | chr3_1:57554185-57554204 | Msa0364480:CDS | 40.0% |
| !! | TCCTGAGCTCTAGCATCTTT+TGG | + | chr3_1:57547536-57547555 | None:intergenic | 45.0% |
| ACACGTGCATCATGAGTCTA+TGG | - | chr3_1:57548161-57548180 | Msa0364480:CDS | 45.0% | |
| !! | TATGGTTCGGTTCGGTTAAC+CGG | - | chr3_1:57548299-57548318 | Msa0364480:CDS | 45.0% |
| GTAGGGCTGGGCAAAATTAA+CGG | + | chr3_1:57548339-57548358 | None:intergenic | 45.0% | |
| GCAGAGAGAAAGGGATAAAG+AGG | - | chr3_1:57549037-57549056 | Msa0364480:intron | 45.0% | |
| TTTACTCGTAAGAGCAGTGG+CGG | - | chr3_1:57549201-57549220 | Msa0364480:intron | 45.0% | |
| CCGAGGCTCTATATAAATCC+TGG | + | chr3_1:57549229-57549248 | None:intergenic | 45.0% | |
| ACGTGTGACTCACAATTTGC+TGG | - | chr3_1:57549270-57549289 | Msa0364480:intron | 45.0% | |
| AGAGACACAAAGAACCAGAG+AGG | - | chr3_1:57549793-57549812 | Msa0364480:intron | 45.0% | |
| GAGACACAAAGAACCAGAGA+GGG | - | chr3_1:57549794-57549813 | Msa0364480:intron | 45.0% | |
| !! | CGGGTTATTTCTGAAGGAGA+AGG | - | chr3_1:57549826-57549845 | Msa0364480:intron | 45.0% |
| GTAGGAATGAGCTATTGGGT+TGG | - | chr3_1:57549919-57549938 | Msa0364480:intron | 45.0% | |
| AACAAAGTAGAAGCAGAGCC+TGG | - | chr3_1:57549952-57549971 | Msa0364480:intron | 45.0% | |
| ACAAAGTAGAAGCAGAGCCT+GGG | - | chr3_1:57549953-57549972 | Msa0364480:intron | 45.0% | |
| GAATGCTAACTAGTGCACCA+AGG | - | chr3_1:57550045-57550064 | Msa0364480:intron | 45.0% | |
| !!! | GTGGGTCGTTTTTCAGAAGA+AGG | + | chr3_1:57550686-57550705 | None:intergenic | 45.0% |
| TTTAGTTATGCGGAAGGGGT+TGG | - | chr3_1:57551714-57551733 | Msa0364480:intron | 45.0% | |
| ATTCTTGCATGTTAGACGGG+AGG | - | chr3_1:57551891-57551910 | Msa0364480:intron | 45.0% | |
| GAGCTAGATAATGAGCAGCT+TGG | + | chr3_1:57551921-57551940 | None:intergenic | 45.0% | |
| AGACTGCGGAAATACAAGGT+GGG | + | chr3_1:57551987-57552006 | None:intergenic | 45.0% | |
| AAGACTGCGGAAATACAAGG+TGG | + | chr3_1:57551988-57552007 | None:intergenic | 45.0% | |
| ACCTTGTATTTCCGCAGTCT+TGG | - | chr3_1:57551987-57552006 | Msa0364480:intron | 45.0% | |
| ACCATTAGGCCATAACAACG+AGG | + | chr3_1:57552371-57552390 | None:intergenic | 45.0% | |
| ACTCTTTCATCCATGGCTAG+AGG | - | chr3_1:57552850-57552869 | Msa0364480:intron | 45.0% | |
| TCAGGAGTCTTTATCACCAC+TGG | + | chr3_1:57553269-57553288 | None:intergenic | 45.0% | |
| ACACATACTTGGCCAGAATG+CGG | - | chr3_1:57553433-57553452 | Msa0364480:intron | 45.0% | |
| TGAATGGCTGAATCGGAAGA+AGG | - | chr3_1:57553544-57553563 | Msa0364480:intron | 45.0% | |
| TGTGGTCGAGGAGAAACAAA+AGG | + | chr3_1:57553584-57553603 | None:intergenic | 45.0% | |
| CTAACTTTCTTGTGTGGTCG+AGG | + | chr3_1:57553596-57553615 | None:intergenic | 45.0% | |
| CGACCACACAAGAAAGTTAG+AGG | - | chr3_1:57553596-57553615 | Msa0364480:intron | 45.0% | |
| ! | TCCTGAGCTCTAACATCCTT+TGG | + | chr3_1:57553804-57553823 | None:intergenic | 45.0% |
| TCTCATACAGCCCAATCATC+TGG | - | chr3_1:57553866-57553885 | Msa0364480:CDS | 45.0% | |
| CTGGAAGCAAATCAACTGGT+AGG | - | chr3_1:57553885-57553904 | Msa0364480:CDS | 45.0% | |
| AGCAAATCAACTGGTAGGAG+AGG | - | chr3_1:57553890-57553909 | Msa0364480:CDS | 45.0% | |
| !!! | TTTTTTTTTTTACAAAAAAA+AGG | + | chr3_1:57548513-57548532 | None:intergenic | 5.0% |
| !! | CTTAAAAAAAATAAAATAAT+GGG | + | chr3_1:57549900-57549919 | None:intergenic | 5.0% |
| !! | ACTTAAAAAAAATAAAATAA+TGG | + | chr3_1:57549901-57549920 | None:intergenic | 5.0% |
| !!! | TTATTTTATTTTTTTTAAGT+AGG | - | chr3_1:57549901-57549920 | Msa0364480:intron | 5.0% |
| !! | TATGAATAATATTAAATTTA+GGG | + | chr3_1:57550216-57550235 | None:intergenic | 5.0% |
| !! | ATAATATAATATAATATAGA+TGG | - | chr3_1:57552267-57552286 | Msa0364480:intron | 5.0% |
| GCCAAAAGATGCTAGAGCTC+AGG | - | chr3_1:57547532-57547551 | Msa0364480:CDS | 50.0% | |
| GTTTCTATCTATCGGCGGGT+TGG | - | chr3_1:57547868-57547887 | Msa0364480:CDS | 50.0% | |
| AGCGAAAGTGAACTGCAACC+AGG | - | chr3_1:57547903-57547922 | Msa0364480:CDS | 50.0% | |
| !! | TTCGGTTCGGTTAACCGGTT+CGG | - | chr3_1:57548304-57548323 | Msa0364480:CDS | 50.0% |
| !! | TTCGGTTAACCGGTTCGGTT+CGG | - | chr3_1:57548309-57548328 | Msa0364480:CDS | 50.0% |
| AACGGTTAACCGAACCGAAC+CGG | + | chr3_1:57548321-57548340 | None:intergenic | 50.0% | |
| AACAAACCTGGTGGAGGAGA+CGG | - | chr3_1:57549667-57549686 | Msa0364480:intron | 50.0% | |
| TGCTGCTAGTTGAGAGAGAG+AGG | - | chr3_1:57549754-57549773 | Msa0364480:intron | 50.0% | |
| GCTGCTAGTTGAGAGAGAGA+GGG | - | chr3_1:57549755-57549774 | Msa0364480:intron | 50.0% | |
| TAGTTGAGAGAGAGAGGGAG+CGG | - | chr3_1:57549760-57549779 | Msa0364480:intron | 50.0% | |
| !! | GTCGCACGGGTTATTTCTGA+AGG | - | chr3_1:57549820-57549839 | Msa0364480:intron | 50.0% |
| AACTAGTGCACCAAGGGCAA+TGG | - | chr3_1:57550052-57550071 | Msa0364480:intron | 50.0% | |
| GCTTCTGCTACCTCTGAATC+TGG | + | chr3_1:57551694-57551713 | None:intergenic | 50.0% | |
| GACTGCGGAAATACAAGGTG+GGG | + | chr3_1:57551986-57552005 | None:intergenic | 50.0% | |
| GCCAAGACTGCGGAAATACA+AGG | + | chr3_1:57551991-57552010 | None:intergenic | 50.0% | |
| GCCTCGTTGTTATGGCCTAA+TGG | - | chr3_1:57552367-57552386 | Msa0364480:intron | 50.0% | |
| GGTCATCGCGATTCGATCAA+TGG | - | chr3_1:57552403-57552422 | Msa0364480:intron | 50.0% | |
| CTCTCTTGGACATGGCTGTT+TGG | - | chr3_1:57553373-57553392 | Msa0364480:intron | 50.0% | |
| TCTTGGACATGGCTGTTTGG+TGG | - | chr3_1:57553376-57553395 | Msa0364480:intron | 50.0% | |
| GCCAAAGGATGTTAGAGCTC+AGG | - | chr3_1:57553800-57553819 | Msa0364480:CDS | 50.0% | |
| TGCAAATAAGTACCAGCCCG+CGG | + | chr3_1:57554165-57554184 | None:intergenic | 50.0% | |
| GAATGCACGACTCGTGCGTA+GGG | + | chr3_1:57548213-57548232 | None:intergenic | 55.0% | |
| TGGAATGCACGAGTAGGGCT+GGG | + | chr3_1:57548351-57548370 | None:intergenic | 55.0% | |
| TTGGAATGCACGAGTAGGGC+TGG | + | chr3_1:57548352-57548371 | None:intergenic | 55.0% | |
| ACAAACCTGGTGGAGGAGAC+GGG | - | chr3_1:57549668-57549687 | Msa0364480:intron | 55.0% | |
| CTGAGAGTTGAGAGAGGGAG+AGG | - | chr3_1:57549731-57549750 | Msa0364480:intron | 55.0% | |
| TGCGCTCAGGACAGTGGTTA+AGG | + | chr3_1:57550180-57550199 | None:intergenic | 55.0% | |
| ! | ACTTGCTAACCAGTGCGCTC+AGG | + | chr3_1:57550193-57550212 | None:intergenic | 55.0% |
| !! | GGAGGCATTGGAGAGGATCT+AGG | - | chr3_1:57552556-57552575 | Msa0364480:intron | 55.0% |
| ATAAGTACCAGCCCGCGGAA+AGG | + | chr3_1:57554160-57554179 | None:intergenic | 55.0% | |
| GGGCTAGGCACGAGTCATGA+TGG | + | chr3_1:57548188-57548207 | None:intergenic | 60.0% | |
| GGAATGCACGACTCGTGCGT+AGG | + | chr3_1:57548214-57548233 | None:intergenic | 60.0% | |
| GGAGAGGAGAGGAGAGGAGA+AGG | - | chr3_1:57549689-57549708 | Msa0364480:intron | 60.0% | |
| ACCAGAGAGGGAGAGTCGCA+CGG | - | chr3_1:57549806-57549825 | Msa0364480:intron | 60.0% | |
| AACCACTGTCCTGAGCGCAC+TGG | - | chr3_1:57550181-57550200 | Msa0364480:intron | 60.0% | |
| AACCAGTGCGCTCAGGACAG+TGG | + | chr3_1:57550186-57550205 | None:intergenic | 60.0% | |
| AAATGGCCGTCGCCTTTCCG+CGG | - | chr3_1:57554145-57554164 | Msa0364480:CDS | 60.0% | |
| CACGACTCGTGCGTAGGGCT+GGG | + | chr3_1:57548208-57548227 | None:intergenic | 65.0% | |
| ! | GTAAGAGCAGTGGCGGAGCC+AGG | - | chr3_1:57549208-57549227 | Msa0364480:intron | 65.0% |
| TGGAGGAGACGGGAGAGGAG+AGG | - | chr3_1:57549678-57549697 | Msa0364480:intron | 65.0% | |
| GAGACGGGAGAGGAGAGGAG+AGG | - | chr3_1:57549683-57549702 | Msa0364480:intron | 65.0% | |
| CCAGAGAGGGAGAGTCGCAC+GGG | - | chr3_1:57549807-57549826 | Msa0364480:intron | 65.0% | |
| !! | ATTCGCCTGGGCTAGTGCCC+AGG | + | chr3_1:57549973-57549992 | None:intergenic | 65.0% |
| GGGCACTAGCCCAGGCGAAT+AGG | - | chr3_1:57549973-57549992 | Msa0364480:intron | 65.0% | |
| AATGGCCGTCGCCTTTCCGC+GGG | - | chr3_1:57554146-57554165 | Msa0364480:CDS | 65.0% | |
| CTCGTGCGTAGGGCTGGGCT+AGG | + | chr3_1:57548203-57548222 | None:intergenic | 70.0% | |
| GCACGACTCGTGCGTAGGGC+TGG | + | chr3_1:57548209-57548228 | None:intergenic | 70.0% | |
| CCTCTCCCGTCTCCTCCACC+AGG | + | chr3_1:57549676-57549695 | None:intergenic | 70.0% | |
| CCTGGTGGAGGAGACGGGAG+AGG | - | chr3_1:57549673-57549692 | Msa0364480:intron | 70.0% | |
| CCCGTGCGACTCTCCCTCTC+TGG | + | chr3_1:57549810-57549829 | None:intergenic | 70.0% | |
| CAGAGCCTGGGCACTAGCCC+AGG | - | chr3_1:57549965-57549984 | Msa0364480:intron | 70.0% | |
| ACCAGCCCGCGGAAAGGCGA+CGG | + | chr3_1:57554154-57554173 | None:intergenic | 70.0% | |
| ! | GCCGTCGCCTTTCCGCGGGC+TGG | - | chr3_1:57554150-57554169 | Msa0364480:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 57547461 | 57554271 | 57547461 | ID=Msa0364480;Name=Msa0364480 |
| chr3_1 | mRNA | 57547461 | 57554271 | 57547461 | ID=Msa0364480-mRNA-1;Parent=Msa0364480;Name=Msa0364480-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0.2|0|1|0.8|0.66|6|0|445 |
| chr3_1 | exon | 57554098 | 57554271 | 57554098 | ID=Msa0364480-mRNA-1:exon:10815;Parent=Msa0364480-mRNA-1 |
| chr3_1 | exon | 57553728 | 57553979 | 57553728 | ID=Msa0364480-mRNA-1:exon:10814;Parent=Msa0364480-mRNA-1 |
| chr3_1 | exon | 57548799 | 57548930 | 57548799 | ID=Msa0364480-mRNA-1:exon:10813;Parent=Msa0364480-mRNA-1 |
| chr3_1 | exon | 57548115 | 57548514 | 57548115 | ID=Msa0364480-mRNA-1:exon:10812;Parent=Msa0364480-mRNA-1 |
| chr3_1 | exon | 57547830 | 57547975 | 57547830 | ID=Msa0364480-mRNA-1:exon:10811;Parent=Msa0364480-mRNA-1 |
| chr3_1 | exon | 57547461 | 57547694 | 57547461 | ID=Msa0364480-mRNA-1:exon:10810;Parent=Msa0364480-mRNA-1 |
| chr3_1 | CDS | 57554098 | 57554271 | 57554098 | ID=Msa0364480-mRNA-1:cds;Parent=Msa0364480-mRNA-1 |
| chr3_1 | CDS | 57553728 | 57553979 | 57553728 | ID=Msa0364480-mRNA-1:cds;Parent=Msa0364480-mRNA-1 |
| chr3_1 | CDS | 57548799 | 57548930 | 57548799 | ID=Msa0364480-mRNA-1:cds;Parent=Msa0364480-mRNA-1 |
| chr3_1 | CDS | 57548115 | 57548514 | 57548115 | ID=Msa0364480-mRNA-1:cds;Parent=Msa0364480-mRNA-1 |
| chr3_1 | CDS | 57547830 | 57547975 | 57547830 | ID=Msa0364480-mRNA-1:cds;Parent=Msa0364480-mRNA-1 |
| chr3_1 | CDS | 57547461 | 57547694 | 57547461 | ID=Msa0364480-mRNA-1:cds;Parent=Msa0364480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
