Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0456120 | XP_003600455.1 | 79.310 | 261 | 52 | 2 | 1 | 260 | 22 | 281 | 9.57e-145 | 417 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0456120 | sp|Q8L3W1|VRN1_ARATH | 26.250 | 320 | 173 | 8 | 1 | 261 | 21 | 336 | 2.35e-30 | 119 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0456120 | G8A2Z2 | 79.310 | 261 | 52 | 2 | 1 | 260 | 22 | 281 | 4.57e-145 | 417 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0456120 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0364480 | Msa0456120 | 0.834461 | 2.957943e-56 | -8.615850e-47 |
| Msa0456120 | Msa0503770 | 0.883030 | 6.333305e-71 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0456120 | MtrunA17_Chr3g0103191 | 81.579 | 228 | 40 | 2 | 1 | 227 | 25 | 251 | 2.06e-134 | 379 |
| Msa0456120 | MtrunA17_Chr3g0103181 | 71.923 | 260 | 68 | 3 | 1 | 260 | 25 | 279 | 2.66e-131 | 372 |
| Msa0456120 | MtrunA17_Chr3g0103171 | 70.115 | 261 | 77 | 1 | 1 | 260 | 5 | 265 | 1.01e-130 | 370 |
| Msa0456120 | MtrunA17_Chr3g0103201 | 76.923 | 221 | 49 | 2 | 41 | 260 | 1 | 220 | 9.88e-119 | 338 |
| Msa0456120 | MtrunA17_Chr3g0103151 | 80.292 | 137 | 27 | 0 | 1 | 137 | 25 | 161 | 1.25e-77 | 232 |
| Msa0456120 | MtrunA17_Chr3g0103161 | 66.935 | 124 | 40 | 1 | 138 | 261 | 2 | 124 | 1.84e-52 | 167 |
| Msa0456120 | MtrunA17_Chr1g0163071 | 36.177 | 293 | 147 | 9 | 2 | 261 | 2 | 287 | 8.87e-51 | 169 |
| Msa0456120 | MtrunA17_Chr8g0390841 | 33.220 | 295 | 150 | 7 | 1 | 263 | 54 | 333 | 4.85e-46 | 161 |
| Msa0456120 | MtrunA17_Chr8g0390841 | 48.438 | 64 | 30 | 2 | 199 | 261 | 457 | 518 | 2.62e-11 | 63.5 |
| Msa0456120 | MtrunA17_Chr1g0208771 | 32.313 | 294 | 151 | 7 | 1 | 261 | 12 | 290 | 3.87e-45 | 157 |
| Msa0456120 | MtrunA17_Chr1g0208771 | 27.232 | 224 | 136 | 7 | 44 | 261 | 256 | 458 | 3.52e-11 | 63.2 |
| Msa0456120 | MtrunA17_Chr7g0233561 | 30.357 | 280 | 176 | 5 | 1 | 261 | 33 | 312 | 7.84e-37 | 133 |
| Msa0456120 | MtrunA17_Chr7g0233521 | 31.716 | 268 | 173 | 4 | 1 | 262 | 1 | 264 | 5.85e-36 | 129 |
| Msa0456120 | MtrunA17_Chr3g0131891 | 30.634 | 284 | 162 | 7 | 1 | 262 | 34 | 304 | 1.51e-33 | 124 |
| Msa0456120 | MtrunA17_Chr7g0233541 | 28.826 | 281 | 179 | 5 | 1 | 261 | 1 | 280 | 1.46e-31 | 118 |
| Msa0456120 | MtrunA17_Chr7g0233531 | 30.370 | 270 | 174 | 6 | 1 | 262 | 1 | 264 | 4.06e-30 | 114 |
| Msa0456120 | MtrunA17_Chr5g0429931 | 29.389 | 262 | 155 | 4 | 1 | 261 | 10 | 242 | 2.54e-29 | 111 |
| Msa0456120 | MtrunA17_Chr1g0163251 | 28.996 | 269 | 175 | 6 | 1 | 261 | 20 | 280 | 1.03e-28 | 112 |
| Msa0456120 | MtrunA17_Chr3g0077451 | 28.302 | 265 | 149 | 5 | 1 | 263 | 11 | 236 | 8.23e-27 | 104 |
| Msa0456120 | MtrunA17_Chr1g0163131 | 31.034 | 290 | 146 | 11 | 2 | 257 | 34 | 303 | 1.07e-26 | 105 |
| Msa0456120 | MtrunA17_Chr1g0163181 | 28.521 | 284 | 166 | 11 | 1 | 259 | 20 | 291 | 6.05e-26 | 105 |
| Msa0456120 | MtrunA17_Chr1g0163261 | 26.199 | 271 | 175 | 5 | 1 | 259 | 24 | 281 | 2.47e-25 | 102 |
| Msa0456120 | MtrunA17_Chr1g0163201 | 26.408 | 284 | 174 | 8 | 1 | 263 | 18 | 287 | 8.04e-25 | 102 |
| Msa0456120 | MtrunA17_Chr7g0233571 | 38.760 | 129 | 79 | 0 | 2 | 130 | 26 | 154 | 2.58e-24 | 97.4 |
| Msa0456120 | MtrunA17_Chr4g0067431 | 30.405 | 296 | 156 | 12 | 1 | 260 | 30 | 311 | 4.39e-24 | 99.0 |
| Msa0456120 | MtrunA17_Chr3g0077411 | 27.881 | 269 | 156 | 6 | 1 | 260 | 277 | 516 | 8.46e-24 | 100 |
| Msa0456120 | MtrunA17_Chr3g0077411 | 25.391 | 256 | 136 | 4 | 1 | 254 | 40 | 242 | 1.30e-18 | 85.1 |
| Msa0456120 | MtrunA17_Chr5g0419201 | 35.075 | 134 | 85 | 1 | 2 | 133 | 32 | 165 | 2.28e-23 | 94.0 |
| Msa0456120 | MtrunA17_Chr3g0077461 | 30.435 | 253 | 126 | 7 | 1 | 250 | 252 | 457 | 2.94e-23 | 98.2 |
| Msa0456120 | MtrunA17_Chr3g0077461 | 44.048 | 84 | 47 | 0 | 1 | 84 | 22 | 105 | 8.84e-18 | 82.4 |
| Msa0456120 | MtrunA17_Chr1g0162441 | 36.752 | 117 | 66 | 1 | 1 | 109 | 22 | 138 | 1.22e-20 | 90.5 |
| Msa0456120 | MtrunA17_Chr1g0163231 | 24.723 | 271 | 175 | 8 | 1 | 259 | 24 | 277 | 3.42e-20 | 87.8 |
| Msa0456120 | MtrunA17_Chr1g0163221 | 29.818 | 275 | 166 | 10 | 2 | 260 | 27 | 290 | 1.97e-19 | 86.7 |
| Msa0456120 | MtrunA17_Chr4g0033961 | 35.043 | 117 | 68 | 1 | 1 | 109 | 21 | 137 | 2.63e-19 | 86.7 |
| Msa0456120 | MtrunA17_Chr3g0077421 | 27.586 | 232 | 126 | 5 | 33 | 261 | 4 | 196 | 1.44e-18 | 81.6 |
| Msa0456120 | MtrunA17_Chr3g0077441 | 27.586 | 232 | 126 | 5 | 33 | 261 | 4 | 196 | 1.44e-18 | 81.6 |
| Msa0456120 | MtrunA17_Chr3g0077431 | 27.234 | 235 | 126 | 6 | 33 | 263 | 4 | 197 | 6.09e-18 | 79.7 |
| Msa0456120 | MtrunA17_Chr1g0171611 | 22.593 | 270 | 170 | 5 | 1 | 259 | 24 | 265 | 1.67e-17 | 80.5 |
| Msa0456120 | MtrunA17_Chr1g0163241 | 34.545 | 110 | 65 | 2 | 1 | 105 | 22 | 129 | 4.95e-17 | 76.6 |
| Msa0456120 | MtrunA17_Chr1g0162411 | 39.785 | 93 | 54 | 1 | 1 | 93 | 22 | 112 | 6.21e-17 | 80.1 |
| Msa0456120 | MtrunA17_Chr3g0077381 | 35.577 | 104 | 67 | 0 | 1 | 104 | 35 | 138 | 9.03e-17 | 79.7 |
| Msa0456120 | MtrunA17_Chr3g0077381 | 41.667 | 84 | 49 | 0 | 1 | 84 | 262 | 345 | 3.02e-14 | 72.0 |
| Msa0456120 | MtrunA17_Chr3g0077361 | 25.385 | 260 | 133 | 7 | 1 | 254 | 55 | 259 | 1.18e-16 | 79.3 |
| Msa0456120 | MtrunA17_Chr4g0009491 | 33.898 | 118 | 67 | 1 | 1 | 107 | 240 | 357 | 1.92e-16 | 78.6 |
| Msa0456120 | MtrunA17_Chr4g0009491 | 32.692 | 104 | 70 | 0 | 1 | 104 | 12 | 115 | 7.97e-14 | 70.9 |
| Msa0456120 | MtrunA17_Chr1g0163191 | 31.373 | 102 | 68 | 1 | 1 | 102 | 20 | 119 | 2.53e-16 | 74.3 |
| Msa0456120 | MtrunA17_Chr6g0476181 | 40.566 | 106 | 60 | 2 | 2 | 107 | 2 | 104 | 5.80e-16 | 73.6 |
| Msa0456120 | MtrunA17_Chr1g0154161 | 22.593 | 270 | 195 | 5 | 2 | 263 | 46 | 309 | 2.60e-15 | 74.7 |
| Msa0456120 | MtrunA17_Chr1g0163161 | 40.196 | 102 | 52 | 3 | 14 | 109 | 1 | 99 | 4.86e-15 | 70.1 |
| Msa0456120 | MtrunA17_Chr1g0154131 | 22.426 | 272 | 192 | 6 | 2 | 257 | 198 | 466 | 1.11e-14 | 73.6 |
| Msa0456120 | MtrunA17_Chr1g0163081 | 38.261 | 115 | 61 | 4 | 2 | 110 | 6 | 116 | 1.85e-14 | 68.9 |
| Msa0456120 | MtrunA17_Chr1g0162161 | 29.545 | 176 | 96 | 6 | 2 | 172 | 4 | 156 | 3.61e-14 | 68.6 |
| Msa0456120 | MtrunA17_Chr1g0163121 | 35.000 | 140 | 75 | 6 | 1 | 134 | 10 | 139 | 2.46e-13 | 65.9 |
| Msa0456120 | MtrunA17_Chr1g0163141 | 40.000 | 95 | 53 | 3 | 1 | 94 | 10 | 101 | 2.68e-13 | 66.6 |
| Msa0456120 | MtrunA17_Chr6g0467351 | 30.216 | 139 | 85 | 2 | 1 | 138 | 30 | 157 | 5.47e-13 | 66.6 |
| Msa0456120 | MtrunA17_Chr1g0163101 | 33.043 | 115 | 68 | 3 | 2 | 110 | 33 | 144 | 4.09e-12 | 63.5 |
| Msa0456120 | MtrunA17_Chr1g0162421 | 40.351 | 57 | 34 | 0 | 1 | 57 | 8 | 64 | 6.98e-11 | 57.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0456120 | AT3G18990.1 | 26.250 | 320 | 173 | 8 | 1 | 261 | 21 | 336 | 2.38e-31 | 119 |
| Msa0456120 | AT3G18990.2 | 26.250 | 320 | 173 | 8 | 1 | 261 | 21 | 336 | 4.10e-31 | 119 |
| Msa0456120 | AT1G49475.1 | 40.000 | 105 | 61 | 2 | 1 | 105 | 49 | 151 | 5.89e-17 | 77.4 |
| Msa0456120 | AT4G01580.1 | 34.677 | 124 | 71 | 2 | 1 | 122 | 45 | 160 | 1.73e-15 | 73.2 |
| Msa0456120 | AT4G33280.1 | 25.087 | 287 | 182 | 10 | 2 | 261 | 39 | 319 | 1.37e-14 | 73.2 |
| Msa0456120 | AT3G18960.2 | 40.476 | 84 | 50 | 0 | 1 | 84 | 45 | 128 | 1.53e-14 | 70.9 |
| Msa0456120 | AT3G18960.3 | 40.476 | 84 | 50 | 0 | 1 | 84 | 8 | 91 | 1.66e-14 | 70.1 |
| Msa0456120 | AT3G18960.1 | 40.476 | 84 | 50 | 0 | 1 | 84 | 45 | 128 | 1.72e-14 | 70.9 |
| Msa0456120 | AT1G49480.3 | 29.457 | 129 | 84 | 4 | 136 | 261 | 97 | 221 | 1.46e-13 | 68.6 |
| Msa0456120 | AT1G49480.1 | 29.457 | 129 | 84 | 4 | 136 | 261 | 97 | 221 | 1.46e-13 | 68.6 |
| Msa0456120 | AT1G49480.2 | 29.457 | 129 | 84 | 4 | 136 | 261 | 97 | 221 | 1.46e-13 | 68.6 |
Find 47 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGACCACATAAGAAAGTTAA+AGG | 0.201598 | 3_3:-49515980 | Msa0456120:intron |
| TGTCTCCTAGTAAACTTATT+TGG | 0.219584 | 3_3:+49516352 | None:intergenic |
| GCACTAAATGGAAAGTTTAT+TGG | 0.220986 | 3_3:-49516285 | Msa0456120:CDS |
| TCCTGAGCTCTAGCATCTTT+TGG | 0.280232 | 3_3:+49515294 | None:intergenic |
| AGACTCCTGATGGCACTAAA+TGG | 0.296213 | 3_3:-49516297 | Msa0456120:CDS |
| CTCTCTTGGACATGGCTGTT+TGG | 0.307883 | 3_3:-49516203 | Msa0456120:CDS |
| TTTACTGAAAATTACTCTCT+TGG | 0.354240 | 3_3:-49516217 | Msa0456120:CDS |
| TGGTGAGATTTGGTTTGAAA+AGG | 0.373936 | 3_3:-49516251 | Msa0456120:CDS |
| AAAGAACTTCATCAATGAAT+TGG | 0.387908 | 3_3:-49515317 | Msa0456120:CDS |
| TATGTAACTGCAGATTTAAA+AGG | 0.392361 | 3_3:-49515074 | Msa0456120:CDS |
| TCTTAGATGAATGGCTTAAT+CGG | 0.403352 | 3_3:-49516039 | Msa0456120:CDS |
| CACTTGAGATCTTAGATGAA+TGG | 0.431142 | 3_3:-49516048 | Msa0456120:CDS |
| ACTTTCCATTTAGTGCCATC+AGG | 0.440549 | 3_3:+49516292 | None:intergenic |
| AGTATGTGATTCTGCAGATT+GGG | 0.463556 | 3_3:-49515031 | Msa0456120:CDS |
| AAACCTTTAACTTTCTTATG+TGG | 0.464229 | 3_3:+49515977 | None:intergenic |
| AGATTTGGTTTGAAAAGGGT+TGG | 0.470784 | 3_3:-49516246 | Msa0456120:CDS |
| ACTTCAAACAGATACATTAA+CGG | 0.476013 | 3_3:+49514830 | None:intergenic |
| TTCACTTTCGCTTGCAAACA+AGG | 0.476076 | 3_3:+49514935 | None:intergenic |
| AAATATGTGTACATCAAACT+TGG | 0.487598 | 3_3:+49516156 | None:intergenic |
| AAATACCAAATAAGTTTACT+AGG | 0.488511 | 3_3:-49516357 | Msa0456120:CDS |
| AATCTATTTCCACTACATTC+CGG | 0.489114 | 3_3:+49516131 | None:intergenic |
| TTGGTGGTGTTTGAATATAA+AGG | 0.491592 | 3_3:-49516184 | Msa0456120:CDS |
| GGTGAGATTTGGTTTGAAAA+GGG | 0.495938 | 3_3:-49516250 | Msa0456120:CDS |
| TGCAGATTGGGAAAAGATCA+TGG | 0.498577 | 3_3:-49515019 | Msa0456120:CDS |
| TTAACTTTCTTATGTGGTCG+AGG | 0.505436 | 3_3:+49515983 | None:intergenic |
| TCTTGGACATGGCTGTTTGG+TGG | 0.505898 | 3_3:-49516200 | Msa0456120:CDS |
| TGTGGTCGAGGAGAAGCTAA+TGG | 0.512745 | 3_3:+49515995 | None:intergenic |
| GCCAAAAGATGCTAGAGCTC+AGG | 0.513948 | 3_3:-49515295 | Msa0456120:CDS |
| CCAGCTTACTATCTACTGTA+TGG | 0.515143 | 3_3:+49515214 | None:intergenic |
| AATGGTTTCTATCTATCGGC+GGG | 0.522564 | 3_3:-49514963 | Msa0456120:CDS |
| GAGTATGTGATTCTGCAGAT+TGG | 0.526064 | 3_3:-49515032 | Msa0456120:CDS |
| TTGATGTACACATATTTGAC+CGG | 0.536461 | 3_3:-49516150 | Msa0456120:CDS |
| GTTTCTATCTATCGGCGGGT+TGG | 0.546695 | 3_3:-49514959 | Msa0456120:CDS |
| AGCGAAAGTGAACTGCAACC+AGG | 0.561940 | 3_3:-49514924 | Msa0456120:CDS |
| TCAAAGACACAAACATCTCC+TGG | 0.563620 | 3_3:+49514906 | None:intergenic |
| TGAATGGCTTAATCGGAAGA+AGG | 0.573439 | 3_3:-49516032 | Msa0456120:CDS |
| AAATGGTTTCTATCTATCGG+CGG | 0.576380 | 3_3:-49514964 | Msa0456120:CDS |
| TCAGGAGTCTTGATCAACAC+TGG | 0.581576 | 3_3:+49516310 | None:intergenic |
| CATATTTGACCGGAATGTAG+TGG | 0.588687 | 3_3:-49516140 | Msa0456120:CDS |
| CCATACAGTAGATAGTAAGC+TGG | 0.603183 | 3_3:-49515214 | Msa0456120:intron |
| TTACTATCTACTGTATGGTG+AGG | 0.604910 | 3_3:+49515219 | None:intergenic |
| AGGAGTTATTGAGAACAAAG+AGG | 0.607683 | 3_3:-49515054 | Msa0456120:CDS |
| GAAAATTACTCTCTTGGACA+TGG | 0.632483 | 3_3:-49516211 | Msa0456120:CDS |
| AATAAGTTTACTAGGAGACA+TGG | 0.640204 | 3_3:-49516349 | Msa0456120:CDS |
| GTGTTGATCAAGACTCCTGA+TGG | 0.647084 | 3_3:-49516307 | Msa0456120:CDS |
| ATCGGAAGAAGGCTAGACAA+AGG | 0.662228 | 3_3:-49516021 | Msa0456120:CDS |
| GAAATTGATCTGTTCTAACG+AGG | 0.726190 | 3_3:-49514991 | Msa0456120:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAGCAAATAAAAATAATT+TGG | + | chr3_3:49515633-49515652 | None:intergenic | 10.0% |
| !! | ATAAGCAAATAAAAATAATT+TGG | + | chr3_3:49515633-49515652 | None:intergenic | 10.0% |
| !!! | AAACTTTACATTTAAAATGA+AGG | - | chr3_3:49515333-49515352 | Msa0456120:CDS | 15.0% |
| !!! | AACTTTACATTTAAAATGAA+GGG | - | chr3_3:49515334-49515353 | Msa0456120:CDS | 15.0% |
| !!! | AAAAATAATTTTTGGTTGAA+GGG | + | chr3_3:49515399-49515418 | None:intergenic | 15.0% |
| !!! | GAAGAATGAAAAATAATTTT+TGG | + | chr3_3:49515407-49515426 | None:intergenic | 15.0% |
| !! | TATATATGTTAGTAGAAATT+TGG | - | chr3_3:49515486-49515505 | Msa0456120:intron | 15.0% |
| !!! | GATGCTATTTATTTAATAAA+AGG | - | chr3_3:49515740-49515759 | Msa0456120:intron | 15.0% |
| !! | ATATATTATAGTGATTGATA+AGG | - | chr3_3:49516078-49516097 | Msa0456120:CDS | 15.0% |
| !!! | AAACTTTACATTTAAAATGA+AGG | - | chr3_3:49515333-49515352 | Msa0456120:CDS | 15.0% |
| !!! | AACTTTACATTTAAAATGAA+GGG | - | chr3_3:49515334-49515353 | Msa0456120:CDS | 15.0% |
| !!! | AAAAATAATTTTTGGTTGAA+GGG | + | chr3_3:49515399-49515418 | None:intergenic | 15.0% |
| !!! | GAAGAATGAAAAATAATTTT+TGG | + | chr3_3:49515407-49515426 | None:intergenic | 15.0% |
| !! | TATATATGTTAGTAGAAATT+TGG | - | chr3_3:49515486-49515505 | Msa0456120:intron | 15.0% |
| !!! | GATGCTATTTATTTAATAAA+AGG | - | chr3_3:49515740-49515759 | Msa0456120:intron | 15.0% |
| !! | ATATATTATAGTGATTGATA+AGG | - | chr3_3:49516078-49516097 | Msa0456120:CDS | 15.0% |
| !! | AAATACCAAATAAGTTTACT+AGG | - | chr3_3:49514834-49514853 | Msa0456120:CDS | 20.0% |
| !! | GTTTATTGGAAAAAAATCAA+TGG | - | chr3_3:49514920-49514939 | Msa0456120:CDS | 20.0% |
| !!! | TTTTCTTTCATTATGCATAA+TGG | - | chr3_3:49515253-49515272 | Msa0456120:CDS | 20.0% |
| !!! | TTTTCTTTCATTATGCATAA+TGG | - | chr3_3:49515253-49515272 | Msa0456120:CDS | 20.0% |
| !!! | TTAATAACACTTTTGTTATG+TGG | - | chr3_3:49515357-49515376 | Msa0456120:intron | 20.0% |
| !!! | GAAAAATAATTTTTGGTTGA+AGG | + | chr3_3:49515400-49515419 | None:intergenic | 20.0% |
| !!! | AATCTTTTAGTCCAAATTAT+TGG | + | chr3_3:49515453-49515472 | None:intergenic | 20.0% |
| !! | AAAACATTAGAGAACATATT+TGG | + | chr3_3:49515812-49515831 | None:intergenic | 20.0% |
| !! | TTTACAAGAATTGTGAAAAA+AGG | + | chr3_3:49515951-49515970 | None:intergenic | 20.0% |
| !! | TAAAAATGGTTTCTATCTAT+CGG | - | chr3_3:49516224-49516243 | Msa0456120:CDS | 20.0% |
| !! | AAATACCAAATAAGTTTACT+AGG | - | chr3_3:49514834-49514853 | Msa0456120:CDS | 20.0% |
| !! | GTTTATTGGAAAAAAATCAA+TGG | - | chr3_3:49514920-49514939 | Msa0456120:CDS | 20.0% |
| !!! | TTTTCTTTCATTATGCATAA+TGG | - | chr3_3:49515253-49515272 | Msa0456120:CDS | 20.0% |
| !!! | TTTTCTTTCATTATGCATAA+TGG | - | chr3_3:49515253-49515272 | Msa0456120:CDS | 20.0% |
| !!! | TTAATAACACTTTTGTTATG+TGG | - | chr3_3:49515357-49515376 | Msa0456120:intron | 20.0% |
| !!! | GAAAAATAATTTTTGGTTGA+AGG | + | chr3_3:49515400-49515419 | None:intergenic | 20.0% |
| !!! | AATCTTTTAGTCCAAATTAT+TGG | + | chr3_3:49515453-49515472 | None:intergenic | 20.0% |
| !! | AAAACATTAGAGAACATATT+TGG | + | chr3_3:49515812-49515831 | None:intergenic | 20.0% |
| !! | TTTACAAGAATTGTGAAAAA+AGG | + | chr3_3:49515951-49515970 | None:intergenic | 20.0% |
| !! | TAAAAATGGTTTCTATCTAT+CGG | - | chr3_3:49516224-49516243 | Msa0456120:CDS | 20.0% |
| ! | AAAAAATCAATGGTGAGATT+TGG | - | chr3_3:49514930-49514949 | Msa0456120:CDS | 25.0% |
| ! | TTTACTGAAAATTACTCTCT+TGG | - | chr3_3:49514974-49514993 | Msa0456120:CDS | 25.0% |
| ! | AAATATGTGTACATCAAACT+TGG | + | chr3_3:49515038-49515057 | None:intergenic | 25.0% |
| !! | AAACCTTTAACTTTCTTATG+TGG | + | chr3_3:49515217-49515236 | None:intergenic | 25.0% |
| ! | ACATAAGAAAGTTAAAGGTT+TGG | - | chr3_3:49515216-49515235 | Msa0456120:CDS | 25.0% |
| !! | AAATTATTGGTTGAGTCTTT+GGG | + | chr3_3:49515440-49515459 | None:intergenic | 25.0% |
| !! | ATTGCAGAATATATTTTGCA+CGG | + | chr3_3:49515681-49515700 | None:intergenic | 25.0% |
| ! | AAAGAACTTCATCAATGAAT+TGG | - | chr3_3:49515874-49515893 | Msa0456120:intron | 25.0% |
| ! | AAGAATTGTGAAAAAAGGAT+TGG | + | chr3_3:49515946-49515965 | None:intergenic | 25.0% |
| ! | GTATTTATACATAGAATTGC+AGG | + | chr3_3:49516036-49516055 | None:intergenic | 25.0% |
| ! | TATGTAACTGCAGATTTAAA+AGG | - | chr3_3:49516117-49516136 | Msa0456120:CDS | 25.0% |
| ! | AAAGTTCATGTCTTCAAAAA+AGG | - | chr3_3:49516336-49516355 | Msa0456120:CDS | 25.0% |
| ! | AAGTTCATGTCTTCAAAAAA+GGG | - | chr3_3:49516337-49516356 | Msa0456120:CDS | 25.0% |
| ! | AAAAAATCAATGGTGAGATT+TGG | - | chr3_3:49514930-49514949 | Msa0456120:CDS | 25.0% |
| ! | TTTACTGAAAATTACTCTCT+TGG | - | chr3_3:49514974-49514993 | Msa0456120:CDS | 25.0% |
| ! | AAATATGTGTACATCAAACT+TGG | + | chr3_3:49515038-49515057 | None:intergenic | 25.0% |
| !! | AAACCTTTAACTTTCTTATG+TGG | + | chr3_3:49515217-49515236 | None:intergenic | 25.0% |
| ! | ACATAAGAAAGTTAAAGGTT+TGG | - | chr3_3:49515216-49515235 | Msa0456120:CDS | 25.0% |
| !! | AAATTATTGGTTGAGTCTTT+GGG | + | chr3_3:49515440-49515459 | None:intergenic | 25.0% |
| !! | ATTGCAGAATATATTTTGCA+CGG | + | chr3_3:49515681-49515700 | None:intergenic | 25.0% |
| ! | AAAGAACTTCATCAATGAAT+TGG | - | chr3_3:49515874-49515893 | Msa0456120:intron | 25.0% |
| ! | AAGAATTGTGAAAAAAGGAT+TGG | + | chr3_3:49515946-49515965 | None:intergenic | 25.0% |
| ! | GTATTTATACATAGAATTGC+AGG | + | chr3_3:49516036-49516055 | None:intergenic | 25.0% |
| ! | TATGTAACTGCAGATTTAAA+AGG | - | chr3_3:49516117-49516136 | Msa0456120:CDS | 25.0% |
| ! | AAAGTTCATGTCTTCAAAAA+AGG | - | chr3_3:49516336-49516355 | Msa0456120:CDS | 25.0% |
| ! | AAGTTCATGTCTTCAAAAAA+GGG | - | chr3_3:49516337-49516356 | Msa0456120:CDS | 25.0% |
| TGTCTCCTAGTAAACTTATT+TGG | + | chr3_3:49514842-49514861 | None:intergenic | 30.0% | |
| AATAAGTTTACTAGGAGACA+TGG | - | chr3_3:49514842-49514861 | Msa0456120:CDS | 30.0% | |
| GCACTAAATGGAAAGTTTAT+TGG | - | chr3_3:49514906-49514925 | Msa0456120:CDS | 30.0% | |
| !! | TTGGTGGTGTTTGAATATAA+AGG | - | chr3_3:49515007-49515026 | Msa0456120:CDS | 30.0% |
| TTGATGTACACATATTTGAC+CGG | - | chr3_3:49515041-49515060 | Msa0456120:CDS | 30.0% | |
| AATCTATTTCCACTACATTC+CGG | + | chr3_3:49515063-49515082 | None:intergenic | 30.0% | |
| TCTTAGATGAATGGCTTAAT+CGG | - | chr3_3:49515152-49515171 | Msa0456120:intron | 30.0% | |
| ! | CAAATTATTGGTTGAGTCTT+TGG | + | chr3_3:49515441-49515460 | None:intergenic | 30.0% |
| CAAAGACTCAACCAATAATT+TGG | - | chr3_3:49515439-49515458 | Msa0456120:intron | 30.0% | |
| ACATCAATTACCATCAAAGT+AGG | + | chr3_3:49515573-49515592 | None:intergenic | 30.0% | |
| AGATGAAACTGCTTGTAATT+TGG | - | chr3_3:49515600-49515619 | Msa0456120:intron | 30.0% | |
| ! | TCATGAATCTTGATGTTTTC+AGG | + | chr3_3:49515777-49515796 | None:intergenic | 30.0% |
| TATACATAGAATTGCAGGAA+TGG | + | chr3_3:49516031-49516050 | None:intergenic | 30.0% | |
| TGTCTCCTAGTAAACTTATT+TGG | + | chr3_3:49514842-49514861 | None:intergenic | 30.0% | |
| AATAAGTTTACTAGGAGACA+TGG | - | chr3_3:49514842-49514861 | Msa0456120:CDS | 30.0% | |
| GCACTAAATGGAAAGTTTAT+TGG | - | chr3_3:49514906-49514925 | Msa0456120:CDS | 30.0% | |
| !! | TTGGTGGTGTTTGAATATAA+AGG | - | chr3_3:49515007-49515026 | Msa0456120:CDS | 30.0% |
| TTGATGTACACATATTTGAC+CGG | - | chr3_3:49515041-49515060 | Msa0456120:CDS | 30.0% | |
| AATCTATTTCCACTACATTC+CGG | + | chr3_3:49515063-49515082 | None:intergenic | 30.0% | |
| TCTTAGATGAATGGCTTAAT+CGG | - | chr3_3:49515152-49515171 | Msa0456120:intron | 30.0% | |
| ! | CAAATTATTGGTTGAGTCTT+TGG | + | chr3_3:49515441-49515460 | None:intergenic | 30.0% |
| CAAAGACTCAACCAATAATT+TGG | - | chr3_3:49515439-49515458 | Msa0456120:intron | 30.0% | |
| ACATCAATTACCATCAAAGT+AGG | + | chr3_3:49515573-49515592 | None:intergenic | 30.0% | |
| AGATGAAACTGCTTGTAATT+TGG | - | chr3_3:49515600-49515619 | Msa0456120:intron | 30.0% | |
| ! | TCATGAATCTTGATGTTTTC+AGG | + | chr3_3:49515777-49515796 | None:intergenic | 30.0% |
| TATACATAGAATTGCAGGAA+TGG | + | chr3_3:49516031-49516050 | None:intergenic | 30.0% | |
| !! | TGGTGAGATTTGGTTTGAAA+AGG | - | chr3_3:49514940-49514959 | Msa0456120:CDS | 35.0% |
| !! | GGTGAGATTTGGTTTGAAAA+GGG | - | chr3_3:49514941-49514960 | Msa0456120:CDS | 35.0% |
| !! | AGATTTGGTTTGAAAAGGGT+TGG | - | chr3_3:49514945-49514964 | Msa0456120:CDS | 35.0% |
| GAAAATTACTCTCTTGGACA+TGG | - | chr3_3:49514980-49514999 | Msa0456120:CDS | 35.0% | |
| CACTTGAGATCTTAGATGAA+TGG | - | chr3_3:49515143-49515162 | Msa0456120:intron | 35.0% | |
| TTAACTTTCTTATGTGGTCG+AGG | + | chr3_3:49515211-49515230 | None:intergenic | 35.0% | |
| CGACCACATAAGAAAGTTAA+AGG | - | chr3_3:49515211-49515230 | Msa0456120:intron | 35.0% | |
| !! | CTTTTGTTATGTGGCAACTT+TGG | - | chr3_3:49515366-49515385 | Msa0456120:intron | 35.0% |
| TATATTGCACACATATACGC+AGG | - | chr3_3:49515831-49515850 | Msa0456120:intron | 35.0% | |
| TTACTATCTACTGTATGGTG+AGG | + | chr3_3:49515975-49515994 | None:intergenic | 35.0% | |
| AGGAGTTATTGAGAACAAAG+AGG | - | chr3_3:49516137-49516156 | Msa0456120:CDS | 35.0% | |
| AGTATGTGATTCTGCAGATT+GGG | - | chr3_3:49516160-49516179 | Msa0456120:CDS | 35.0% | |
| GAAATTGATCTGTTCTAACG+AGG | - | chr3_3:49516200-49516219 | Msa0456120:CDS | 35.0% | |
| TGTTCTAACGAGGCTAAAAA+TGG | - | chr3_3:49516210-49516229 | Msa0456120:CDS | 35.0% | |
| AAATGGTTTCTATCTATCGG+CGG | - | chr3_3:49516227-49516246 | Msa0456120:CDS | 35.0% | |
| !! | TGGTGAGATTTGGTTTGAAA+AGG | - | chr3_3:49514940-49514959 | Msa0456120:CDS | 35.0% |
| !! | GGTGAGATTTGGTTTGAAAA+GGG | - | chr3_3:49514941-49514960 | Msa0456120:CDS | 35.0% |
| !! | AGATTTGGTTTGAAAAGGGT+TGG | - | chr3_3:49514945-49514964 | Msa0456120:CDS | 35.0% |
| GAAAATTACTCTCTTGGACA+TGG | - | chr3_3:49514980-49514999 | Msa0456120:CDS | 35.0% | |
| CACTTGAGATCTTAGATGAA+TGG | - | chr3_3:49515143-49515162 | Msa0456120:intron | 35.0% | |
| TTAACTTTCTTATGTGGTCG+AGG | + | chr3_3:49515211-49515230 | None:intergenic | 35.0% | |
| CGACCACATAAGAAAGTTAA+AGG | - | chr3_3:49515211-49515230 | Msa0456120:intron | 35.0% | |
| !! | CTTTTGTTATGTGGCAACTT+TGG | - | chr3_3:49515366-49515385 | Msa0456120:intron | 35.0% |
| TATATTGCACACATATACGC+AGG | - | chr3_3:49515831-49515850 | Msa0456120:intron | 35.0% | |
| TTACTATCTACTGTATGGTG+AGG | + | chr3_3:49515975-49515994 | None:intergenic | 35.0% | |
| AGGAGTTATTGAGAACAAAG+AGG | - | chr3_3:49516137-49516156 | Msa0456120:CDS | 35.0% | |
| AGTATGTGATTCTGCAGATT+GGG | - | chr3_3:49516160-49516179 | Msa0456120:CDS | 35.0% | |
| GAAATTGATCTGTTCTAACG+AGG | - | chr3_3:49516200-49516219 | Msa0456120:CDS | 35.0% | |
| TGTTCTAACGAGGCTAAAAA+TGG | - | chr3_3:49516210-49516229 | Msa0456120:CDS | 35.0% | |
| AAATGGTTTCTATCTATCGG+CGG | - | chr3_3:49516227-49516246 | Msa0456120:CDS | 35.0% | |
| ACTTTCCATTTAGTGCCATC+AGG | + | chr3_3:49514902-49514921 | None:intergenic | 40.0% | |
| CATATTTGACCGGAATGTAG+TGG | - | chr3_3:49515051-49515070 | Msa0456120:CDS | 40.0% | |
| TGAATGGCTTAATCGGAAGA+AGG | - | chr3_3:49515159-49515178 | Msa0456120:intron | 40.0% | |
| CCAGCTTACTATCTACTGTA+TGG | + | chr3_3:49515980-49515999 | None:intergenic | 40.0% | |
| CCATACAGTAGATAGTAAGC+TGG | - | chr3_3:49515977-49515996 | Msa0456120:intron | 40.0% | |
| GAGTATGTGATTCTGCAGAT+TGG | - | chr3_3:49516159-49516178 | Msa0456120:CDS | 40.0% | |
| TGCAGATTGGGAAAAGATCA+TGG | - | chr3_3:49516172-49516191 | Msa0456120:CDS | 40.0% | |
| AATGGTTTCTATCTATCGGC+GGG | - | chr3_3:49516228-49516247 | Msa0456120:CDS | 40.0% | |
| TTCACTTTCGCTTGCAAACA+AGG | + | chr3_3:49516259-49516278 | None:intergenic | 40.0% | |
| TCAAAGACACAAACATCTCC+TGG | + | chr3_3:49516288-49516307 | None:intergenic | 40.0% | |
| ACTTTCCATTTAGTGCCATC+AGG | + | chr3_3:49514902-49514921 | None:intergenic | 40.0% | |
| CATATTTGACCGGAATGTAG+TGG | - | chr3_3:49515051-49515070 | Msa0456120:CDS | 40.0% | |
| TGAATGGCTTAATCGGAAGA+AGG | - | chr3_3:49515159-49515178 | Msa0456120:intron | 40.0% | |
| CCAGCTTACTATCTACTGTA+TGG | + | chr3_3:49515980-49515999 | None:intergenic | 40.0% | |
| CCATACAGTAGATAGTAAGC+TGG | - | chr3_3:49515977-49515996 | Msa0456120:intron | 40.0% | |
| GAGTATGTGATTCTGCAGAT+TGG | - | chr3_3:49516159-49516178 | Msa0456120:CDS | 40.0% | |
| TGCAGATTGGGAAAAGATCA+TGG | - | chr3_3:49516172-49516191 | Msa0456120:CDS | 40.0% | |
| AATGGTTTCTATCTATCGGC+GGG | - | chr3_3:49516228-49516247 | Msa0456120:CDS | 40.0% | |
| TTCACTTTCGCTTGCAAACA+AGG | + | chr3_3:49516259-49516278 | None:intergenic | 40.0% | |
| TCAAAGACACAAACATCTCC+TGG | + | chr3_3:49516288-49516307 | None:intergenic | 40.0% | |
| TCAGGAGTCTTGATCAACAC+TGG | + | chr3_3:49514884-49514903 | None:intergenic | 45.0% | |
| ! | GTGTTGATCAAGACTCCTGA+TGG | - | chr3_3:49514884-49514903 | Msa0456120:CDS | 45.0% |
| AGACTCCTGATGGCACTAAA+TGG | - | chr3_3:49514894-49514913 | Msa0456120:CDS | 45.0% | |
| ATCGGAAGAAGGCTAGACAA+AGG | - | chr3_3:49515170-49515189 | Msa0456120:intron | 45.0% | |
| ATCAAAGTAGGCAGCGCAAT+TGG | + | chr3_3:49515561-49515580 | None:intergenic | 45.0% | |
| AATTGCGCTGCCTACTTTGA+TGG | - | chr3_3:49515560-49515579 | Msa0456120:intron | 45.0% | |
| !! | TCCTGAGCTCTAGCATCTTT+TGG | + | chr3_3:49515900-49515919 | None:intergenic | 45.0% |
| TCAGGAGTCTTGATCAACAC+TGG | + | chr3_3:49514884-49514903 | None:intergenic | 45.0% | |
| ! | GTGTTGATCAAGACTCCTGA+TGG | - | chr3_3:49514884-49514903 | Msa0456120:CDS | 45.0% |
| AGACTCCTGATGGCACTAAA+TGG | - | chr3_3:49514894-49514913 | Msa0456120:CDS | 45.0% | |
| ATCGGAAGAAGGCTAGACAA+AGG | - | chr3_3:49515170-49515189 | Msa0456120:intron | 45.0% | |
| ATCAAAGTAGGCAGCGCAAT+TGG | + | chr3_3:49515561-49515580 | None:intergenic | 45.0% | |
| AATTGCGCTGCCTACTTTGA+TGG | - | chr3_3:49515560-49515579 | Msa0456120:intron | 45.0% | |
| !! | TCCTGAGCTCTAGCATCTTT+TGG | + | chr3_3:49515900-49515919 | None:intergenic | 45.0% |
| CTCTCTTGGACATGGCTGTT+TGG | - | chr3_3:49514988-49515007 | Msa0456120:CDS | 50.0% | |
| TCTTGGACATGGCTGTTTGG+TGG | - | chr3_3:49514991-49515010 | Msa0456120:CDS | 50.0% | |
| TGTGGTCGAGGAGAAGCTAA+TGG | + | chr3_3:49515199-49515218 | None:intergenic | 50.0% | |
| GGCAGCGCAATTGGTAAACT+AGG | + | chr3_3:49515552-49515571 | None:intergenic | 50.0% | |
| GCCAAAAGATGCTAGAGCTC+AGG | - | chr3_3:49515896-49515915 | Msa0456120:intron | 50.0% | |
| GTTTCTATCTATCGGCGGGT+TGG | - | chr3_3:49516232-49516251 | Msa0456120:CDS | 50.0% | |
| AGCGAAAGTGAACTGCAACC+AGG | - | chr3_3:49516267-49516286 | Msa0456120:CDS | 50.0% | |
| CTCTCTTGGACATGGCTGTT+TGG | - | chr3_3:49514988-49515007 | Msa0456120:CDS | 50.0% | |
| TCTTGGACATGGCTGTTTGG+TGG | - | chr3_3:49514991-49515010 | Msa0456120:CDS | 50.0% | |
| TGTGGTCGAGGAGAAGCTAA+TGG | + | chr3_3:49515199-49515218 | None:intergenic | 50.0% | |
| GGCAGCGCAATTGGTAAACT+AGG | + | chr3_3:49515552-49515571 | None:intergenic | 50.0% | |
| GCCAAAAGATGCTAGAGCTC+AGG | - | chr3_3:49515896-49515915 | Msa0456120:intron | 50.0% | |
| GTTTCTATCTATCGGCGGGT+TGG | - | chr3_3:49516232-49516251 | Msa0456120:CDS | 50.0% | |
| AGCGAAAGTGAACTGCAACC+AGG | - | chr3_3:49516267-49516286 | Msa0456120:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 49514833 | 49516380 | 49514833 | ID=Msa0456120;Name=Msa0456120 |
| chr3_3 | mRNA | 49514833 | 49516380 | 49514833 | ID=Msa0456120-mRNA-1;Parent=Msa0456120;Name=Msa0456120-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0|1|1|1|3|0|269 |
| chr3_3 | exon | 49515981 | 49516380 | 49515981 | ID=Msa0456120-mRNA-1:exon:9385;Parent=Msa0456120-mRNA-1 |
| chr3_3 | exon | 49515215 | 49515360 | 49515215 | ID=Msa0456120-mRNA-1:exon:9384;Parent=Msa0456120-mRNA-1 |
| chr3_3 | exon | 49514833 | 49515096 | 49514833 | ID=Msa0456120-mRNA-1:exon:9383;Parent=Msa0456120-mRNA-1 |
| chr3_3 | CDS | 49515981 | 49516380 | 49515981 | ID=Msa0456120-mRNA-1:cds;Parent=Msa0456120-mRNA-1 |
| chr3_3 | CDS | 49515215 | 49515360 | 49515215 | ID=Msa0456120-mRNA-1:cds;Parent=Msa0456120-mRNA-1 |
| chr3_3 | CDS | 49514833 | 49515096 | 49514833 | ID=Msa0456120-mRNA-1:cds;Parent=Msa0456120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
