AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0364660

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 78 sgRNAs with CRISPR-Local

Find 363 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTAATTTACAGGTTGTATT+TGG 0.074952 3_1:-58095199 Msa0364660:intron
TATTTAGTGCGGTAACATTT+TGG 0.131252 3_1:-58094510 Msa0364660:three_prime_UTR
GACTACATGCATCTGTTTAT+TGG 0.131544 3_1:-58095104 Msa0364660:five_prime_UTR
TCGATAAAGCGGACTATATT+TGG 0.163042 3_1:+58100538 None:intergenic
GGTCTAATTATTCAAGTATA+TGG 0.228048 3_1:-58094592 Msa0364660:three_prime_UTR
GTTGGTATCTTGAGATGTTT+TGG 0.265679 3_1:-58094614 Msa0364660:three_prime_UTR
GTCTTCTGGTCCAGTTAAAT+TGG 0.268659 3_1:-58096913 Msa0364660:five_prime_UTR
AAATGTTACCGCACTAAATA+AGG 0.270267 3_1:+58094513 None:intergenic
TAACATTACCTCTGGTAAAT+AGG 0.276133 3_1:+58096301 None:intergenic
TACAGGTTGTATTTGGGAAA+TGG 0.310094 3_1:-58095192 Msa0364660:intron
CTAAAAGTTTGATTCTTTGT+TGG 0.335078 3_1:-58096994 Msa0364660:intron
TGAAGATCTGCCAATTTAAC+TGG 0.341262 3_1:+58096903 None:intergenic
CAACACCTCCTGCAGGTTCT+TGG 0.342195 3_1:+58100686 None:intergenic
ACTAGCGATGTAACGTCTTC+TGG 0.347637 3_1:-58096927 Msa0364660:five_prime_UTR
TAGTAGAATCTACATATATT+AGG 0.349507 3_1:-58094643 Msa0364660:three_prime_UTR
ACAGGTTGTATTTGGGAAAT+GGG 0.352688 3_1:-58095191 Msa0364660:intron
TGGGATTGGCTTACTACTCT+TGG 0.364769 3_1:-58094490 Msa0364660:three_prime_UTR
TTAATTTACAGGTTGTATTT+GGG 0.371554 3_1:-58095198 Msa0364660:intron
TGTGTCTCGGAAGTTGGAAT+TGG 0.376856 3_1:-58094730 Msa0364660:CDS
TTTGAAGCCTAAACCTTGTA+TGG 0.377135 3_1:+58098450 None:intergenic
TGATCTGATATTGCCATTGA+TGG 0.395309 3_1:-58096354 Msa0364660:five_prime_UTR
AAACAATGCATAAAGTATCT+TGG 0.412573 3_1:-58095126 Msa0364660:five_prime_UTR
TTGGTTTCAGGACTTTGCTT+CGG 0.416766 3_1:-58100434 Msa0364660:intron
CTTAATAATTCGTAAATAGC+AGG 0.421671 3_1:-58094965 Msa0364660:five_prime_UTR
TACAGGTGTGGCTTCAAGTC+TGG 0.428978 3_1:-58098479 Msa0364660:five_prime_UTR
GTTGCATCCACACCAAAGTT+CGG 0.439990 3_1:+58096948 None:intergenic
GGTTTATGTGTCTCGGAAGT+TGG 0.448136 3_1:-58094736 Msa0364660:CDS
TTGCATCCACACCAAAGTTC+GGG 0.455855 3_1:+58096949 None:intergenic
AAAATTATACACAAGCAATC+TGG 0.457069 3_1:-58094907 Msa0364660:CDS
TAAACTTGCTAGCATAATTG+AGG 0.458592 3_1:-58099890 Msa0364660:five_prime_UTR
ATTGAGGTTTCTGCAAAGAA+AGG 0.460952 3_1:-58099874 Msa0364660:five_prime_UTR
GTGAAATGCATACCATTGTA+AGG 0.467507 3_1:+58100708 None:intergenic
ATCAATGGCAATATCAGATC+AGG 0.469632 3_1:+58096356 None:intergenic
AAGATGTTGCAGCAGTTGCC+TGG 0.470189 3_1:-58098396 Msa0364660:five_prime_UTR
GTTGGAAAGAGCTGCAAACT+TGG 0.470657 3_1:-58096976 Msa0364660:five_prime_UTR
GTAGAGACCATACAAGGTTT+AGG 0.478054 3_1:-58098457 Msa0364660:five_prime_UTR
TTGAAGCCACACCTGTAGCT+TGG 0.484234 3_1:+58098485 None:intergenic
TATACCAGGGGATATGCAAT+TGG 0.491803 3_1:-58095810 Msa0364660:five_prime_UTR
GACCAGCTGGTTAGAAAAGC+AGG 0.492266 3_1:+58094992 None:intergenic
CAGAGAATATTGAGCAACAT+TGG 0.493876 3_1:-58096882 Msa0364660:five_prime_UTR
AATGGTAACGTCTCCATCAA+TGG 0.501612 3_1:+58096341 None:intergenic
GCTGTCATGCTCATCTGCAC+CGG 0.502038 3_1:-58094780 Msa0364660:CDS
AACTTGGTTGTCCCGAACTT+TGG 0.511711 3_1:-58096960 Msa0364660:five_prime_UTR
AGCAACATTGGACCTGCTGC+AGG 0.516938 3_1:-58096870 Msa0364660:intron
GTGCTAATAGACAATGGACT+TGG 0.527032 3_1:+58100786 None:intergenic
TATGAACTTTGTAGATTACA+AGG 0.528266 3_1:-58099300 Msa0364660:intron
ATTGATGGAGACGTTACCAT+TGG 0.528804 3_1:-58096339 Msa0364660:five_prime_UTR
ACTCATCAAAACTACTCCTC+AGG 0.538645 3_1:-58100408 Msa0364660:intron
TTAGGATGGTTTATGTGTCT+CGG 0.538766 3_1:-58094743 Msa0364660:CDS
GGGGTATCAACACCTCCTGC+AGG 0.542175 3_1:+58100679 None:intergenic
GAATTTAAATAATTAAGTGA+TGG 0.544905 3_1:-58094537 Msa0364660:three_prime_UTR
GAAGCTAGACGCTGCTCCAA+TGG 0.546492 3_1:+58096323 None:intergenic
CTCATTACAAAACATCCACT+TGG 0.559824 3_1:+58094849 None:intergenic
TGAAAACTTACTCGATAAAG+CGG 0.560296 3_1:+58100527 None:intergenic
CAGACAACAATCCAAGCTAC+AGG 0.561704 3_1:-58098496 Msa0364660:five_prime_UTR
ATTATTAAGAAATGACCAGC+TGG 0.562914 3_1:+58094979 None:intergenic
TGTAACTTATTACCTGCAGC+AGG 0.562977 3_1:+58096858 None:intergenic
TACACCAGCAGATTTAGTCC+AGG 0.567876 3_1:+58098378 None:intergenic
TTTCACCAACTGTTGTGTAT+CGG 0.574904 3_1:+58094687 None:intergenic
AGTCTGGTAGAGACCATACA+AGG 0.588548 3_1:-58098463 Msa0364660:five_prime_UTR
GCATTTCACCAAGAACCTGC+AGG 0.590233 3_1:-58100694 Msa0364660:five_prime_UTR
GTTGCCTGGACTAAATCTGC+TGG 0.593614 3_1:-58098382 Msa0364660:five_prime_UTR
AAAGATGTGCTAATAGACAA+TGG 0.601442 3_1:+58100780 None:intergenic
ATAGCCAATTGCATATCCCC+TGG 0.603291 3_1:+58095806 None:intergenic
TTTGTCCGATACACAACAGT+TGG 0.603462 3_1:-58094692 Msa0364660:three_prime_UTR
CTATGAATACATTGTTCGCG+AGG 0.610523 3_1:-58094932 Msa0364660:CDS
TTTAGAAGCACATACCATTG+GGG 0.624275 3_1:+58100659 None:intergenic
GTGATGGTCCTTATTTAGTG+CGG 0.628041 3_1:-58094521 Msa0364660:three_prime_UTR
AGCATTCTTGATCGTGACGA+AGG 0.633829 3_1:-58096756 Msa0364660:intron
GGTTGTCCCGAACTTTGGTG+TGG 0.640547 3_1:-58096955 Msa0364660:five_prime_UTR
TCTAGCTTCCTATTTACCAG+AGG 0.641283 3_1:-58096309 Msa0364660:intron
GAAACACTTCTCTGCAATCG+CGG 0.646893 3_1:-58094668 Msa0364660:three_prime_UTR
AACAATCCAAGCTACAGGTG+TGG 0.660249 3_1:-58098491 Msa0364660:five_prime_UTR
TATGAATACATTGTTCGCGA+GGG 0.660312 3_1:-58094931 Msa0364660:CDS
TTAGAAGCACATACCATTGG+GGG 0.661818 3_1:+58100660 None:intergenic
ATGACTCTGAAGATGCCAAG+TGG 0.665039 3_1:-58094864 Msa0364660:CDS
TTTCACCAAGAACCTGCAGG+AGG 0.721912 3_1:-58100691 Msa0364660:five_prime_UTR
GTATGTATCAGAAAACAGTG+TGG 0.872261 3_1:-58095853 Msa0364660:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATTAATTTACTACTAAT+TGG + chr3_1:58096231-58096250 None:intergenic 10.0%
!!! GTTTCTATTTTTTTTTTTTT+TGG - chr3_1:58097219-58097238 Msa0364660:intron 10.0%
!! TTATAAAAAATATTAGCAAA+AGG - chr3_1:58098736-58098755 Msa0364660:intron 10.0%
!! AAAAAAAAAATATTAGCAAA+AGG - chr3_1:58098792-58098811 Msa0364660:intron 10.0%
!!! TTGGAATATTTTATATTATA+TGG - chr3_1:58099310-58099329 Msa0364660:intron 10.0%
!!! ATGTTAGTAAATTTTACTTT+AGG - chr3_1:58094490-58094509 Msa0364660:three_prime_UTR 15.0%
!!! ATTTTATAAAGGGATTTTTT+AGG - chr3_1:58094760-58094779 Msa0364660:CDS 15.0%
!! ATAGTTGTATATTTCAAATA+TGG + chr3_1:58094868-58094887 None:intergenic 15.0%
!! AAAAGAAACAATGAAAATAA+TGG + chr3_1:58094974-58094993 None:intergenic 15.0%
!! AATTTAAATTACAAAACGAT+CGG - chr3_1:58095177-58095196 Msa0364660:five_prime_UTR 15.0%
!!! AAACATCTTAATATTTTTGT+AGG - chr3_1:58095783-58095802 Msa0364660:intron 15.0%
!! ATTTATTAAGTTACTACTAA+GGG + chr3_1:58096424-58096443 None:intergenic 15.0%
!! TATTTATTAAGTTACTACTA+AGG + chr3_1:58096425-58096444 None:intergenic 15.0%
!! TAGTAACTTAATAAATATTG+AGG - chr3_1:58096428-58096447 Msa0364660:intron 15.0%
!! AGTAACTTAATAAATATTGA+GGG - chr3_1:58096429-58096448 Msa0364660:intron 15.0%
!!! GATTTTTTATTGTTATTACT+TGG - chr3_1:58097188-58097207 Msa0364660:intron 15.0%
!!! TTTAACACCATTATTTTATT+TGG - chr3_1:58099486-58099505 Msa0364660:intron 15.0%
!! TTACTACTGAAATAAAATAA+TGG + chr3_1:58099555-58099574 None:intergenic 15.0%
!! TCACATATAATATAATGAAT+TGG - chr3_1:58099738-58099757 Msa0364660:intron 15.0%
!! AAAAACATTGAATAACTAAT+GGG + chr3_1:58099842-58099861 None:intergenic 15.0%
!! TAAAAACATTGAATAACTAA+TGG + chr3_1:58099843-58099862 None:intergenic 15.0%
!! AAAAGAAATATGTAAAATTC+AGG + chr3_1:58099957-58099976 None:intergenic 15.0%
!!! TGAATTTTACATATTTCTTT+TGG - chr3_1:58099956-58099975 Msa0364660:intron 15.0%
!! GAATTTAAATAATTAAGTGA+TGG - chr3_1:58100700-58100719 Msa0364660:five_prime_UTR 15.0%
!!! AGAAAATATTTTCCTTACAA+TGG - chr3_1:58094517-58094536 Msa0364660:three_prime_UTR 20.0%
!!! TGCTCAATGTTATTTTATAA+AGG - chr3_1:58094749-58094768 Msa0364660:CDS 20.0%
!!! GCTCAATGTTATTTTATAAA+GGG - chr3_1:58094750-58094769 Msa0364660:CDS 20.0%
!! TATGAAGTTTGAATATTCTT+TGG - chr3_1:58094784-58094803 Msa0364660:CDS 20.0%
!!! TAAATGCAATTTTAAGTACA+CGG - chr3_1:58095071-58095090 Msa0364660:five_prime_UTR 20.0%
!!! GATCGTTTTGTAATTTAAAT+TGG + chr3_1:58095178-58095197 None:intergenic 20.0%
!! GAAATATTATACTAAGAATC+AGG + chr3_1:58095467-58095486 None:intergenic 20.0%
!! TTATATTATTGTTCATGTCA+TGG - chr3_1:58095506-58095525 Msa0364660:intron 20.0%
!!! ATTTGTTATTTGTGATATCA+AGG - chr3_1:58095617-58095636 Msa0364660:intron 20.0%
!! CATATTAAATGTGTATTCAT+TGG - chr3_1:58096024-58096043 Msa0364660:intron 20.0%
!!! TGTGTTTTATCTATAAAAGA+GGG + chr3_1:58096135-58096154 None:intergenic 20.0%
!!! TTACTACTAATTGGTTTTAA+TGG + chr3_1:58096222-58096241 None:intergenic 20.0%
!! AGTAAATTAATAAATAGCCT+TGG - chr3_1:58096237-58096256 Msa0364660:intron 20.0%
!!! AACTTCTTTTTTGTATTAGA+AGG - chr3_1:58096992-58097011 Msa0364660:intron 20.0%
!!! ACTTCTTTTTTGTATTAGAA+GGG - chr3_1:58096993-58097012 Msa0364660:intron 20.0%
!!! GATTATACTTTGAGAAATTT+TGG + chr3_1:58097255-58097274 None:intergenic 20.0%
!!! GCATTTGAAGTTTTTAATAT+AGG + chr3_1:58097478-58097497 None:intergenic 20.0%
!!! ACATTATAGGTTTTTAGTTT+TGG - chr3_1:58097905-58097924 Msa0364660:intron 20.0%
!!! ATTTCGACCTAAATATTTTA+TGG - chr3_1:58098072-58098091 Msa0364660:intron 20.0%
!! CATGTTACCATAAAATATTT+AGG + chr3_1:58098082-58098101 None:intergenic 20.0%
!! GATTGAAATTCGAATATAAT+CGG + chr3_1:58098596-58098615 None:intergenic 20.0%
!! TATTATAACTCAAATCACAA+TGG - chr3_1:58099180-58099199 Msa0364660:intron 20.0%
!! TACATAGCCAAATAAAATAA+TGG + chr3_1:58099496-58099515 None:intergenic 20.0%
!!! ATTTTATTTGGCTATGTATA+TGG - chr3_1:58099498-58099517 Msa0364660:intron 20.0%
!! GAAAGATAAAAAAGAAAACT+AGG - chr3_1:58099576-58099595 Msa0364660:intron 20.0%
!! AGATAAGAAATATCTTAAAC+AGG - chr3_1:58099658-58099677 Msa0364660:intron 20.0%
!! GATAAGAAATATCTTAAACA+GGG - chr3_1:58099659-58099678 Msa0364660:intron 20.0%
!! ATAAGAAATATCTTAAACAG+GGG - chr3_1:58099660-58099679 Msa0364660:intron 20.0%
!!! CAATGTTTTTATACTTTCAA+TGG - chr3_1:58099852-58099871 Msa0364660:intron 20.0%
!! AATGTGAAAAATAGTTCAAA+TGG + chr3_1:58099902-58099921 None:intergenic 20.0%
!!! ATTTTTCTCTCTTAATTTAC+AGG - chr3_1:58100028-58100047 Msa0364660:intron 20.0%
!! TTAATTTACAGGTTGTATTT+GGG - chr3_1:58100039-58100058 Msa0364660:intron 20.0%
!! TAGTAGAATCTACATATATT+AGG - chr3_1:58100594-58100613 Msa0364660:intron 20.0%
!!! TGGATTTTATCTTAGTAAAT+CGG - chr3_1:58100767-58100786 Msa0364660:five_prime_UTR 20.0%
!! TTTGAATATTCTTTGGTTTC+AGG - chr3_1:58094791-58094810 Msa0364660:CDS 25.0%
!! ATACAACTATCTTTTAGCAT+TGG - chr3_1:58094878-58094897 Msa0364660:CDS 25.0%
!!! TTTTCATTGTTTCTTTTGTC+TGG - chr3_1:58094977-58094996 Msa0364660:five_prime_UTR 25.0%
!!! TTTCATTGTTTCTTTTGTCT+GGG - chr3_1:58094978-58094997 Msa0364660:five_prime_UTR 25.0%
! TTTGATATCGTTAAGAATTG+CGG - chr3_1:58095213-58095232 Msa0364660:intron 25.0%
!!! GTTTTATAATTTCTAGCTTC+TGG - chr3_1:58095685-58095704 Msa0364660:intron 25.0%
! ATATTGCAATGTAAATATGC+AGG - chr3_1:58095725-58095744 Msa0364660:intron 25.0%
!!! ATCTTAATATTTTTGTAGGC+TGG - chr3_1:58095787-58095806 Msa0364660:intron 25.0%
! TATGAACTTTGTAGATTACA+AGG - chr3_1:58095937-58095956 Msa0364660:intron 25.0%
! TAGTTGAAAAAAATGTAGCA+AGG - chr3_1:58096072-58096091 Msa0364660:intron 25.0%
! AGTTGAAAAAAATGTAGCAA+GGG - chr3_1:58096073-58096092 Msa0364660:intron 25.0%
!! GTGTGTTTTATCTATAAAAG+AGG + chr3_1:58096136-58096155 None:intergenic 25.0%
! TCTCATCTCAATATGAATTA+TGG - chr3_1:58096482-58096501 Msa0364660:intron 25.0%
! TATCTAAACTTTCAGATGAA+AGG - chr3_1:58096555-58096574 Msa0364660:intron 25.0%
! TTAATCAGGAAAATTTGAAC+AGG + chr3_1:58096921-58096940 None:intergenic 25.0%
! ATTTCTCAAAGTATAATCTG+TGG - chr3_1:58097257-58097276 Msa0364660:intron 25.0%
! TTTCTCAAAGTATAATCTGT+GGG - chr3_1:58097258-58097277 Msa0364660:intron 25.0%
!!! AAACCAGATTTTTTTACAAC+AGG + chr3_1:58097362-58097381 None:intergenic 25.0%
!!! CTTTCCATTTTTTTACTCAA+TGG - chr3_1:58097551-58097570 Msa0364660:intron 25.0%
! TCATCCATTGAGTAAAAAAA+TGG + chr3_1:58097558-58097577 None:intergenic 25.0%
!!! TATGTGTCAATTTGTCATTT+TGG - chr3_1:58097615-58097634 Msa0364660:intron 25.0%
! AACATTAAACATTTGATCAG+AGG + chr3_1:58097647-58097666 None:intergenic 25.0%
!! TGCAAGATTTCTTCATATTT+TGG - chr3_1:58098112-58098131 Msa0364660:intron 25.0%
!!! TTCATATTTTGGAAATCACT+TGG - chr3_1:58098123-58098142 Msa0364660:intron 25.0%
! CTAAAAGTTTGATTCTTTGT+TGG - chr3_1:58098243-58098262 Msa0364660:intron 25.0%
! CATATCATCAGAAAAGTAAT+AGG + chr3_1:58098452-58098471 None:intergenic 25.0%
!! CAGTTTTCTTGCATTTAATT+AGG - chr3_1:58098833-58098852 Msa0364660:intron 25.0%
! AAGAAGAAGCTATATATTAC+GGG + chr3_1:58099076-58099095 None:intergenic 25.0%
! GAAGAAGAAGCTATATATTA+CGG + chr3_1:58099077-58099096 None:intergenic 25.0%
! TAATATATAGCTTCTTCTTC+TGG - chr3_1:58099077-58099096 Msa0364660:intron 25.0%
! GTCAGTTTATTAATATACAG+TGG + chr3_1:58099114-58099133 None:intergenic 25.0%
!! GCTTTTATTCAACATTTCAA+TGG - chr3_1:58099234-58099253 Msa0364660:intron 25.0%
!! AATGGTTTGTAGATATAATC+TGG - chr3_1:58099252-58099271 Msa0364660:intron 25.0%
! GTTAGAACCATAAAGAAAAT+AGG + chr3_1:58099350-58099369 None:intergenic 25.0%
! ATACATACACCAATATAAGA+AGG + chr3_1:58099372-58099391 None:intergenic 25.0%
!! ATATTTTACATGTGTATACC+AGG - chr3_1:58099413-58099432 Msa0364660:intron 25.0%
!! TATTTTACATGTGTATACCA+GGG - chr3_1:58099414-58099433 Msa0364660:intron 25.0%
! ATATGTGAGAACTAACTAAT+GGG + chr3_1:58099726-58099745 None:intergenic 25.0%
! TATATGTGAGAACTAACTAA+TGG + chr3_1:58099727-58099746 None:intergenic 25.0%
! CATATAAGATGATTTCAATG+TGG - chr3_1:58099793-58099812 Msa0364660:intron 25.0%
!! AAAAAGTATATCAGATTCAG+AGG - chr3_1:58099980-58099999 Msa0364660:intron 25.0%
! CTTAATTTACAGGTTGTATT+TGG - chr3_1:58100038-58100057 Msa0364660:intron 25.0%
!! GATACTTTATGCATTGTTTT+CGG + chr3_1:58100110-58100129 None:intergenic 25.0%
!! AAACAATGCATAAAGTATCT+TGG - chr3_1:58100111-58100130 Msa0364660:intron 25.0%
! CTTAATAATTCGTAAATAGC+AGG - chr3_1:58100272-58100291 Msa0364660:intron 25.0%
! AAAATTATACACAAGCAATC+TGG - chr3_1:58100330-58100349 Msa0364660:intron 25.0%
!!! GTTTTTATTGTGTCATTCTT+CGG - chr3_1:58100435-58100454 Msa0364660:intron 25.0%
!! ACATATATTAGGACTTTTGT+TGG - chr3_1:58100605-58100624 Msa0364660:intron 25.0%
! GGTCTAATTATTCAAGTATA+TGG - chr3_1:58100645-58100664 Msa0364660:intron 25.0%
AAAGATGTGCTAATAGACAA+TGG + chr3_1:58094460-58094479 None:intergenic 30.0%
CTTCTAAACTAAATGCTTTG+AGG - chr3_1:58094593-58094612 Msa0364660:three_prime_UTR 30.0%
!!! ATGCTTTGAGGAATTTTATG+TGG - chr3_1:58094605-58094624 Msa0364660:three_prime_UTR 30.0%
TGTTTGATAAATTGTTGCAG+TGG - chr3_1:58094659-58094678 Msa0364660:three_prime_UTR 30.0%
TGAAAACTTACTCGATAAAG+CGG + chr3_1:58094713-58094732 None:intergenic 30.0%
ATAAGAACTCATCTAGAAGA+AGG + chr3_1:58094907-58094926 None:intergenic 30.0%
TAGTTTATAGCTGACCTTAA+TGG - chr3_1:58095020-58095039 Msa0364660:five_prime_UTR 30.0%
TATAGCTAACTACACCATTA+AGG + chr3_1:58095037-58095056 None:intergenic 30.0%
TTTGAGTACCAATGAACAAA+TGG - chr3_1:58095094-58095113 Msa0364660:five_prime_UTR 30.0%
TTGAGTACCAATGAACAAAT+GGG - chr3_1:58095095-58095114 Msa0364660:five_prime_UTR 30.0%
! GGAGATTACTAATGCATTTT+TGG - chr3_1:58095116-58095135 Msa0364660:five_prime_UTR 30.0%
! TTGTTTCATGGTTCTACATT+TGG + chr3_1:58095149-58095168 None:intergenic 30.0%
GTAGAACCATGAAACAATAT+TGG - chr3_1:58095152-58095171 Msa0364660:five_prime_UTR 30.0%
AATTGGCCAATATTGTTTCA+TGG + chr3_1:58095161-58095180 None:intergenic 30.0%
!! TAAACTTGCTAGCATAATTG+AGG - chr3_1:58095347-58095366 Msa0364660:intron 30.0%
ACAGCCACAATTGTAAAAAT+TGG - chr3_1:58095553-58095572 Msa0364660:intron 30.0%
CAGCCACAATTGTAAAAATT+GGG - chr3_1:58095554-58095573 Msa0364660:intron 30.0%
AATAGAGCAAGTTTCGATTA+AGG + chr3_1:58095600-58095619 None:intergenic 30.0%
TGGAAATGATACAAGTTAGT+TGG - chr3_1:58095975-58095994 Msa0364660:intron 30.0%
AAAATGTAGCAAGGGAAAAT+TGG - chr3_1:58096081-58096100 Msa0364660:intron 30.0%
!!! TACTAATTGGTTTTAATGGC+AGG + chr3_1:58096218-58096237 None:intergenic 30.0%
TGTCCTGTTGTAAAAAAATC+TGG - chr3_1:58097356-58097375 Msa0364660:intron 30.0%
! TTTTACTTGAAACAAAGTGC+CGG - chr3_1:58097510-58097529 Msa0364660:intron 30.0%
!!! GTCAATTTGTCATTTTGGTT+AGG - chr3_1:58097620-58097639 Msa0364660:intron 30.0%
TATACTTTGTTCATGATACC+AGG + chr3_1:58097726-58097745 None:intergenic 30.0%
! TGTTTTCATGAATCAAGACT+TGG - chr3_1:58097749-58097768 Msa0364660:intron 30.0%
! GAGAGTGATTTGTACATTAT+AGG - chr3_1:58097892-58097911 Msa0364660:intron 30.0%
ACCAAACAGGACATAAATTT+GGG + chr3_1:58097945-58097964 None:intergenic 30.0%
AACCAAACAGGACATAAATT+TGG + chr3_1:58097946-58097965 None:intergenic 30.0%
! AACAATGTTTGAAACCAAAC+AGG + chr3_1:58097958-58097977 None:intergenic 30.0%
TTGGTTTCAAACATTGTTTC+TGG - chr3_1:58097960-58097979 Msa0364660:intron 30.0%
! TGGTTTCAAACATTGTTTCT+GGG - chr3_1:58097961-58097980 Msa0364660:intron 30.0%
ATAAGTACTTTGTAACACCT+GGG + chr3_1:58098043-58098062 None:intergenic 30.0%
CACAGTCTTAATATATAGCA+AGG + chr3_1:58098535-58098554 None:intergenic 30.0%
TAACATTACCTCTGGTAAAT+AGG + chr3_1:58098939-58098958 None:intergenic 30.0%
CATTGATATAACATTACCTC+TGG + chr3_1:58098947-58098966 None:intergenic 30.0%
! TAGAAATCTGGTTTAGACAA+AGG + chr3_1:58098991-58099010 None:intergenic 30.0%
TCATCATGTCTATAGAAATC+TGG + chr3_1:58099003-58099022 None:intergenic 30.0%
AATATACAGTGGCAATGAAA+AGG + chr3_1:58099103-58099122 None:intergenic 30.0%
AAATATTCCAACTGTCAAGA+AGG + chr3_1:58099301-58099320 None:intergenic 30.0%
! TTTGCTGCCTATTTTCTTTA+TGG - chr3_1:58099340-58099359 Msa0364660:intron 30.0%
!! TGGTTCTAACCTTCTTATAT+TGG - chr3_1:58099360-58099379 Msa0364660:intron 30.0%
! ATTTTACATGTGTATACCAG+GGG - chr3_1:58099415-58099434 Msa0364660:intron 30.0%
TATGCAATTGGCTATGTATA+TGG - chr3_1:58099439-58099458 Msa0364660:intron 30.0%
TTATTTGGCTATGTATATGG+TGG - chr3_1:58099501-58099520 Msa0364660:intron 30.0%
!! TTATACTCATTGACTTGCAA+AGG - chr3_1:58099927-58099946 Msa0364660:intron 30.0%
TATATCAGATTCAGAGGAAA+CGG - chr3_1:58099986-58100005 Msa0364660:intron 30.0%
ATTATTAAGAAATGACCAGC+TGG + chr3_1:58100261-58100280 None:intergenic 30.0%
! TTGTAATGAGATTTTGTAGC+TGG - chr3_1:58100401-58100420 Msa0364660:intron 30.0%
! TTGGTATCTTGAGATGTTTT+GGG - chr3_1:58100624-58100643 Msa0364660:intron 30.0%
AAATGTTACCGCACTAAATA+AGG + chr3_1:58100727-58100746 None:intergenic 30.0%
! TATTTAGTGCGGTAACATTT+TGG - chr3_1:58100727-58100746 Msa0364660:five_prime_UTR 30.0%
! ATTTAGTGCGGTAACATTTT+GGG - chr3_1:58100728-58100747 Msa0364660:five_prime_UTR 30.0%
GTGAAATGCATACCATTGTA+AGG + chr3_1:58094532-58094551 None:intergenic 35.0%
! TTTAGAAGCACATACCATTG+GGG + chr3_1:58094581-58094600 None:intergenic 35.0%
! GTTTAGAAGCACATACCATT+GGG + chr3_1:58094582-58094601 None:intergenic 35.0%
! AGTTTAGAAGCACATACCAT+TGG + chr3_1:58094583-58094602 None:intergenic 35.0%
!! TCGATAAAGCGGACTATATT+TGG + chr3_1:58094702-58094721 None:intergenic 35.0%
GTAATCTCCCATTTGTTCAT+TGG + chr3_1:58095105-58095124 None:intergenic 35.0%
!!! TGTTGTTTTGTAGGTCAAGA+TGG - chr3_1:58095306-58095325 Msa0364660:intron 35.0%
ATTGAGGTTTCTGCAAAGAA+AGG - chr3_1:58095363-58095382 Msa0364660:intron 35.0%
GATAACTTCCCTATAGAATC+AGG + chr3_1:58095441-58095460 None:intergenic 35.0%
! GAGCCCAATTTTTACAATTG+TGG + chr3_1:58095560-58095579 None:intergenic 35.0%
AAATTGGGCTCATGACATAT+TGG - chr3_1:58095569-58095588 Msa0364660:intron 35.0%
ACCCTGTGACAGTATAAATT+TGG - chr3_1:58095852-58095871 Msa0364660:intron 35.0%
CCCAAATTTATACTGTCACA+GGG + chr3_1:58095856-58095875 None:intergenic 35.0%
CCCTGTGACAGTATAAATTT+GGG - chr3_1:58095853-58095872 Msa0364660:intron 35.0%
CCTGTGACAGTATAAATTTG+GGG - chr3_1:58095854-58095873 Msa0364660:intron 35.0%
GGATCAGCTAAATTCTTTAC+TGG - chr3_1:58095875-58095894 Msa0364660:intron 35.0%
AATTCTTTACTGGAAGTTGC+TGG - chr3_1:58095885-58095904 Msa0364660:intron 35.0%
GTAGATTACAAGGTAGATAC+TGG - chr3_1:58095947-58095966 Msa0364660:intron 35.0%
TAAAGTTGTTGTCATGTGAC+TGG - chr3_1:58096269-58096288 Msa0364660:intron 35.0%
AGCCTCTTGTGTAAAAAACA+GGG - chr3_1:58096319-58096338 Msa0364660:five_prime_UTR 35.0%
!!! TACCCTGTTTTTTACACAAG+AGG + chr3_1:58096324-58096343 None:intergenic 35.0%
CTTGTGTAAAAAACAGGGTA+AGG - chr3_1:58096324-58096343 Msa0364660:five_prime_UTR 35.0%
TCAGTCAGGACATCATTTAA+CGG + chr3_1:58096617-58096636 None:intergenic 35.0%
CACATCTTAAATTGTCAGTC+AGG + chr3_1:58096631-58096650 None:intergenic 35.0%
TTGTGCTTATCATGTTCAGT+TGG - chr3_1:58096713-58096732 Msa0364660:intron 35.0%
! TTTGAAGCCTAAACCTTGTA+TGG + chr3_1:58096790-58096809 None:intergenic 35.0%
GTTTGTATAGGCCTGATTAA+GGG - chr3_1:58096961-58096980 Msa0364660:five_prime_UTR 35.0%
GTTAATCCATACCCTTAATC+AGG + chr3_1:58096975-58096994 None:intergenic 35.0%
!! GATGAGTTCTGAATAAGTGA+AGG + chr3_1:58097113-58097132 None:intergenic 35.0%
CAGAACTCATCTTAAATGAG+AGG - chr3_1:58097122-58097141 Msa0364660:intron 35.0%
CATTAGCACTTTAATGCCAA+TGG + chr3_1:58097151-58097170 None:intergenic 35.0%
ATTAACACACATGCAATCAG+AGG + chr3_1:58097407-58097426 None:intergenic 35.0%
AGAGATTGAAACTCAATCAG+AGG + chr3_1:58097673-58097692 None:intergenic 35.0%
! CTCTCTATCTTTTATGTTGC+AGG - chr3_1:58097689-58097708 Msa0364660:intron 35.0%
TTGCTGAATTGACCAACTAT+AGG - chr3_1:58097829-58097848 Msa0364660:intron 35.0%
TGATCAAACACACCTATAGT+TGG + chr3_1:58097844-58097863 None:intergenic 35.0%
! AGTTTTTCTTCGCTGCATTT+CGG - chr3_1:58097864-58097883 Msa0364660:intron 35.0%
ACCCAAATTTATGTCCTGTT+TGG - chr3_1:58097941-58097960 Msa0364660:intron 35.0%
ATAAGATCTAACACACTGCA+GGG + chr3_1:58098010-58098029 None:intergenic 35.0%
CATAAGTACTTTGTAACACC+TGG + chr3_1:58098044-58098063 None:intergenic 35.0%
TATCTATTCATTTACCCGAC+TGG - chr3_1:58098217-58098236 Msa0364660:intron 35.0%
! TCAAACTTTTAGTGTCCAGT+CGG + chr3_1:58098155-58098174 None:intergenic 35.0%
TGAAGATCTGCCAATTTAAC+TGG + chr3_1:58098337-58098356 None:intergenic 35.0%
CAGAGAATATTGAGCAACAT+TGG - chr3_1:58098355-58098374 Msa0364660:intron 35.0%
TGACGAAGGTAATAATCACT+TGG - chr3_1:58098495-58098514 Msa0364660:five_prime_UTR 35.0%
AAAACTGTATCCCATGATGA+GGG - chr3_1:58098670-58098689 Msa0364660:intron 35.0%
ATCAATGGCAATATCAGATC+AGG + chr3_1:58098884-58098903 None:intergenic 35.0%
TGATCTGATATTGCCATTGA+TGG - chr3_1:58098883-58098902 Msa0364660:intron 35.0%
CTATATATTACGGGACTAAG+GGG + chr3_1:58099067-58099086 None:intergenic 35.0%
GCTATATATTACGGGACTAA+GGG + chr3_1:58099068-58099087 None:intergenic 35.0%
AGCTATATATTACGGGACTA+AGG + chr3_1:58099069-58099088 None:intergenic 35.0%
CTCAAATCACAATGGAAACT+TGG - chr3_1:58099188-58099207 Msa0364660:intron 35.0%
TAGATATAATCTGGCAACAC+TGG - chr3_1:58099261-58099280 Msa0364660:intron 35.0%
TTTCTTACCTTCTTGACAGT+TGG - chr3_1:58099291-58099310 Msa0364660:intron 35.0%
GTATGTATCAGAAAACAGTG+TGG - chr3_1:58099384-58099403 Msa0364660:intron 35.0%
TACAGGTTGTATTTGGGAAA+TGG - chr3_1:58100045-58100064 Msa0364660:intron 35.0%
ACAGGTTGTATTTGGGAAAT+GGG - chr3_1:58100046-58100065 Msa0364660:intron 35.0%
GACTACATGCATCTGTTTAT+TGG - chr3_1:58100133-58100152 Msa0364660:intron 35.0%
TATGAATACATTGTTCGCGA+GGG - chr3_1:58100306-58100325 Msa0364660:intron 35.0%
CTCATTACAAAACATCCACT+TGG + chr3_1:58100391-58100410 None:intergenic 35.0%
TTAGGATGGTTTATGTGTCT+CGG - chr3_1:58100494-58100513 Msa0364660:intron 35.0%
TTTCACCAACTGTTGTGTAT+CGG + chr3_1:58100553-58100572 None:intergenic 35.0%
! GTTGGTATCTTGAGATGTTT+TGG - chr3_1:58100623-58100642 Msa0364660:intron 35.0%
! GTGCTAATAGACAATGGACT+TGG + chr3_1:58094454-58094473 None:intergenic 40.0%
! TTAGAAGCACATACCATTGG+GGG + chr3_1:58094580-58094599 None:intergenic 40.0%
TTGGTTTCAGGACTTTGCTT+CGG - chr3_1:58094803-58094822 Msa0364660:CDS 40.0%
ACTCATCAAAACTACTCCTC+AGG - chr3_1:58094829-58094848 Msa0364660:CDS 40.0%
ACTATCCTGGTTCCTTGATT+TGG + chr3_1:58095004-58095023 None:intergenic 40.0%
AGGTCAGCTATAAACTATCC+TGG + chr3_1:58095017-58095036 None:intergenic 40.0%
AAGAATTGCGGTCTCTAATG+TGG - chr3_1:58095225-58095244 Msa0364660:intron 40.0%
GTCTAATTCGACCGCAATTT+AGG + chr3_1:58095260-58095279 None:intergenic 40.0%
TTGATGGAATGTTGCACTGA+TGG - chr3_1:58095281-58095300 Msa0364660:intron 40.0%
! TGATGGAATGTTGCACTGAT+GGG - chr3_1:58095282-58095301 Msa0364660:intron 40.0%
!!! CTGATGGGATGTTGTTTTGT+AGG - chr3_1:58095297-58095316 Msa0364660:intron 40.0%
!! AGTTGATGGACCAAGTTGAT+TGG - chr3_1:58095412-58095431 Msa0364660:intron 40.0%
ATTGGCTGCCTGATTCTATA+GGG - chr3_1:58095430-58095449 Msa0364660:intron 40.0%
GTCTTGAGTGCTAGCAATTA+TGG - chr3_1:58095528-58095547 Msa0364660:intron 40.0%
AATATGCAGGACAGAGATCT+AGG - chr3_1:58095738-58095757 Msa0364660:intron 40.0%
ATATGCAGGACAGAGATCTA+GGG - chr3_1:58095739-58095758 Msa0364660:intron 40.0%
CCCCAAATTTATACTGTCAC+AGG + chr3_1:58095857-58095876 None:intergenic 40.0%
AGGTGTAAATCAGTCTCTCT+GGG + chr3_1:58096198-58096217 None:intergenic 40.0%
CAGCCTCTTGTGTAAAAAAC+AGG - chr3_1:58096318-58096337 Msa0364660:five_prime_UTR 40.0%
CGTACAATACACCAAATGGT+GGG - chr3_1:58096350-58096369 Msa0364660:five_prime_UTR 40.0%
GTAGAGACCATACAAGGTTT+AGG - chr3_1:58096780-58096799 Msa0364660:intron 40.0%
GAGTGCATTACGCTTTAATC+AGG + chr3_1:58096935-58096954 None:intergenic 40.0%
AAAGCGTAATGCACTCACTT+TGG - chr3_1:58096939-58096958 Msa0364660:five_prime_UTR 40.0%
!! GCACTCACTTTGGTTTGTAT+AGG - chr3_1:58096949-58096968 Msa0364660:five_prime_UTR 40.0%
GGTTTGTATAGGCCTGATTA+AGG - chr3_1:58096960-58096979 Msa0364660:five_prime_UTR 40.0%
TATAGGCCTGATTAAGGGTA+TGG - chr3_1:58096966-58096985 Msa0364660:five_prime_UTR 40.0%
CTTAAATGAGAGGACACCAT+TGG - chr3_1:58097132-58097151 Msa0364660:intron 40.0%
! GGCATTAAAGTGCTAATGAG+AGG - chr3_1:58097153-58097172 Msa0364660:intron 40.0%
GCTAATGAGAGGACACTTAT+TGG - chr3_1:58097164-58097183 Msa0364660:intron 40.0%
AAATCTCCAAAGCTGCAACA+TGG + chr3_1:58097450-58097469 None:intergenic 40.0%
!! ATGTTGCAGCTTTGGAGATT+TGG - chr3_1:58097449-58097468 Msa0364660:intron 40.0%
TAAGATCTAACACACTGCAG+GGG + chr3_1:58098009-58098028 None:intergenic 40.0%
GATAAGATCTAACACACTGC+AGG + chr3_1:58098011-58098030 None:intergenic 40.0%
! CAAACTTTTAGTGTCCAGTC+AGG + chr3_1:58098154-58098173 None:intergenic 40.0%
! CAAACTTTTAGTGTCCAGTC+GGG + chr3_1:58098154-58098173 None:intergenic 40.0%
GTCTTCTGGTCCAGTTAAAT+TGG - chr3_1:58098324-58098343 Msa0364660:intron 40.0%
TGTAACTTATTACCTGCAGC+AGG + chr3_1:58098382-58098401 None:intergenic 40.0%
CAAAACTGTATCCCATGATG+AGG - chr3_1:58098669-58098688 Msa0364660:intron 40.0%
AAACTGTATCCCATGATGAG+GGG - chr3_1:58098671-58098690 Msa0364660:intron 40.0%
! AATGGTAACGTCTCCATCAA+TGG + chr3_1:58098899-58098918 None:intergenic 40.0%
ATTGATGGAGACGTTACCAT+TGG - chr3_1:58098898-58098917 Msa0364660:intron 40.0%
! TCTAGCTTCCTATTTACCAG+AGG - chr3_1:58098928-58098947 Msa0364660:intron 40.0%
TATACCAGGGGATATGCAAT+TGG - chr3_1:58099427-58099446 Msa0364660:intron 40.0%
GCAATTGGCTATGTATATGG+TGG - chr3_1:58099442-58099461 Msa0364660:intron 40.0%
CTTAAACAGGGGAGAAAACT+AGG - chr3_1:58099671-58099690 Msa0364660:intron 40.0%
!! ATTGTTTTCGGAGCTTTGGT+CGG + chr3_1:58100098-58100117 None:intergenic 40.0%
! ATGCATTGTTTTCGGAGCTT+TGG + chr3_1:58100102-58100121 None:intergenic 40.0%
CTATGAATACATTGTTCGCG+AGG - chr3_1:58100305-58100324 Msa0364660:intron 40.0%
!! GATTTTGTAGCTGGTCTGTT+CGG - chr3_1:58100410-58100429 Msa0364660:five_prime_UTR 40.0%
!! TGTTTTTGCAGTGGTTAGGA+TGG - chr3_1:58100480-58100499 Msa0364660:intron 40.0%
TTTGTCCGATACACAACAGT+TGG - chr3_1:58100545-58100564 Msa0364660:five_prime_UTR 40.0%
! GTGATGGTCCTTATTTAGTG+CGG - chr3_1:58100716-58100735 Msa0364660:five_prime_UTR 40.0%
TGGAATAACATGAGCACCTG+AGG + chr3_1:58094848-58094867 None:intergenic 45.0%
! CTTTTGTCTGGGCCAAATCA+AGG - chr3_1:58094989-58095008 Msa0364660:five_prime_UTR 45.0%
! GGTTGATGCTGCCTAAATTG+CGG - chr3_1:58095246-58095265 Msa0364660:intron 45.0%
GCGGTCGAATTAGACTTTGA+TGG - chr3_1:58095265-58095284 Msa0364660:intron 45.0%
AATCAGGCAGCCAATCAACT+TGG + chr3_1:58095425-58095444 None:intergenic 45.0%
! GATTGGCTGCCTGATTCTAT+AGG - chr3_1:58095429-58095448 Msa0364660:intron 45.0%
TATGCAGGACAGAGATCTAG+GGG - chr3_1:58095740-58095759 Msa0364660:intron 45.0%
CAAGGTAGATACTGGACTTC+TGG - chr3_1:58095955-58095974 Msa0364660:intron 45.0%
CAGGTGTAAATCAGTCTCTC+TGG + chr3_1:58096199-58096218 None:intergenic 45.0%
! ATAAATAGCCTTGGCGCAAC+TGG - chr3_1:58096246-58096265 Msa0364660:intron 45.0%
GTTGTTGTCATGTGACTGGA+AGG - chr3_1:58096273-58096292 Msa0364660:intron 45.0%
! TTACACAAGAGGCTGTTTCC+AGG + chr3_1:58096313-58096332 None:intergenic 45.0%
GCTGCGTACAATACACCAAA+TGG - chr3_1:58096346-58096365 Msa0364660:five_prime_UTR 45.0%
GCGTACAATACACCAAATGG+TGG - chr3_1:58096349-58096368 Msa0364660:five_prime_UTR 45.0%
AGTTACTACTAAGGGCAACC+CGG + chr3_1:58096416-58096435 None:intergenic 45.0%
CAGACAACAATCCAAGCTAC+AGG - chr3_1:58096741-58096760 Msa0364660:intron 45.0%
AACAATCCAAGCTACAGGTG+TGG - chr3_1:58096746-58096765 Msa0364660:intron 45.0%
AGTCTGGTAGAGACCATACA+AGG - chr3_1:58096774-58096793 Msa0364660:intron 45.0%
TACACCAGCAGATTTAGTCC+AGG + chr3_1:58096862-58096881 None:intergenic 45.0%
!! TTGCAGCTTTGGAGATTTGG+AGG - chr3_1:58097452-58097471 Msa0364660:intron 45.0%
!! TACTTGAAACAAAGTGCCGG+TGG - chr3_1:58097513-58097532 Msa0364660:intron 45.0%
GTGCAACATAGACATACCAC+CGG + chr3_1:58097532-58097551 None:intergenic 45.0%
! TTGCAGGAGCTATGTTTTCC+TGG - chr3_1:58097705-58097724 Msa0364660:intron 45.0%
ATCTTATCACGTTCCTTCCC+AGG - chr3_1:58098023-58098042 Msa0364660:intron 45.0%
GTACTTTGTAACACCTGGGA+AGG + chr3_1:58098039-58098058 None:intergenic 45.0%
ATCACTTGGCATTACCTGAC+TGG - chr3_1:58098137-58098156 Msa0364660:intron 45.0%
GTTGGAAAGAGCTGCAAACT+TGG - chr3_1:58098261-58098280 Msa0364660:intron 45.0%
AACTTGGTTGTCCCGAACTT+TGG - chr3_1:58098277-58098296 Msa0364660:intron 45.0%
TTGCATCCACACCAAAGTTC+GGG + chr3_1:58098291-58098310 None:intergenic 45.0%
GTTGCATCCACACCAAAGTT+CGG + chr3_1:58098292-58098311 None:intergenic 45.0%
ACTAGCGATGTAACGTCTTC+TGG - chr3_1:58098310-58098329 Msa0364660:intron 45.0%
AGCATTCTTGATCGTGACGA+AGG - chr3_1:58098481-58098500 Msa0364660:five_prime_UTR 45.0%
ACACTAATGCCCCTCATCAT+GGG + chr3_1:58098683-58098702 None:intergenic 45.0%
GGCATTAGTGTGCAGTTTGA+CGG - chr3_1:58098692-58098711 Msa0364660:intron 45.0%
!! GTGTGCAGTTTGACGGATTT+AGG - chr3_1:58098699-58098718 Msa0364660:intron 45.0%
ATAGCCAATTGCATATCCCC+TGG + chr3_1:58099434-58099453 None:intergenic 45.0%
! TGGCTATGTATATGGTGGAG+TGG - chr3_1:58099447-58099466 Msa0364660:intron 45.0%
! TGGCTATGTATATGGTGGAG+TGG - chr3_1:58099447-58099466 Msa0364660:intron 45.0%
!! TTGTTTTCGGAGCTTTGGTC+GGG + chr3_1:58100097-58100116 None:intergenic 45.0%
!! TTCCTGCTTTTCTAACCAGC+TGG - chr3_1:58100243-58100262 Msa0364660:intron 45.0%
! ATGACTCTGAAGATGCCAAG+TGG - chr3_1:58100373-58100392 Msa0364660:intron 45.0%
CCTAACCACTGCAAAAACAC+CGG + chr3_1:58100479-58100498 None:intergenic 45.0%
GGTTTATGTGTCTCGGAAGT+TGG - chr3_1:58100501-58100520 Msa0364660:intron 45.0%
TGTGTCTCGGAAGTTGGAAT+TGG - chr3_1:58100507-58100526 Msa0364660:intron 45.0%
GAAACACTTCTCTGCAATCG+CGG - chr3_1:58100569-58100588 Msa0364660:intron 45.0%
!!! GTGCGGTAACATTTTGGGAT+TGG - chr3_1:58100733-58100752 Msa0364660:five_prime_UTR 45.0%
!! TGGGATTGGCTTACTACTCT+TGG - chr3_1:58100747-58100766 Msa0364660:five_prime_UTR 45.0%
GCATTTCACCAAGAACCTGC+AGG - chr3_1:58094543-58094562 Msa0364660:three_prime_UTR 50.0%
TTTCACCAAGAACCTGCAGG+AGG - chr3_1:58094546-58094565 Msa0364660:three_prime_UTR 50.0%
AACTCGTGATCTCAAGCTCC+AGG - chr3_1:58095386-58095405 Msa0364660:intron 50.0%
ACTCGTGATCTCAAGCTCCA+GGG - chr3_1:58095387-58095406 Msa0364660:intron 50.0%
CAACTTTACCAGTTGCGCCA+AGG + chr3_1:58096257-58096276 None:intergenic 50.0%
GTCATGTGACTGGAAGGTCT+CGG - chr3_1:58096279-58096298 Msa0364660:intron 50.0%
TCATGTGACTGGAAGGTCTC+GGG - chr3_1:58096280-58096299 Msa0364660:intron 50.0%
TTGAAGCCACACCTGTAGCT+TGG + chr3_1:58096755-58096774 None:intergenic 50.0%
TACAGGTGTGGCTTCAAGTC+TGG - chr3_1:58096758-58096777 Msa0364660:five_prime_UTR 50.0%
AAGATGTTGCAGCAGTTGCC+TGG - chr3_1:58096841-58096860 Msa0364660:intron 50.0%
GTTGCCTGGACTAAATCTGC+TGG - chr3_1:58096855-58096874 Msa0364660:intron 50.0%
GTACTGCCATGTTGCAGCTT+TGG - chr3_1:58097441-58097460 Msa0364660:intron 50.0%
CACACTAATGCCCCTCATCA+TGG + chr3_1:58098684-58098703 None:intergenic 50.0%
!! TGTTTTCGGAGCTTTGGTCG+GGG + chr3_1:58100096-58100115 None:intergenic 50.0%
GACCAGCTGGTTAGAAAAGC+AGG + chr3_1:58100248-58100267 None:intergenic 50.0%
!! CCGGTGTTTTTGCAGTGGTT+AGG - chr3_1:58100476-58100495 Msa0364660:intron 50.0%
CAACACCTCCTGCAGGTTCT+TGG + chr3_1:58094554-58094573 None:intergenic 55.0%
!! GGAGGTGTTGATACCCCCAA+TGG - chr3_1:58094564-58094583 Msa0364660:three_prime_UTR 55.0%
CTGGGCCAAATCAAGGAACC+AGG - chr3_1:58094996-58095015 Msa0364660:five_prime_UTR 55.0%
! CAAGCTCCAGGGCAAGTTGA+TGG - chr3_1:58095398-58095417 Msa0364660:intron 55.0%
CTTGGTCCATCAACTTGCCC+TGG + chr3_1:58095407-58095426 None:intergenic 55.0%
AAGGTCTCGGGTTCAAGTCC+TGG - chr3_1:58096292-58096311 Msa0364660:intron 55.0%
CTAAAGCTCCCGCATACGCA+CGG + chr3_1:58096389-58096408 None:intergenic 55.0%
! ATGCGGGAGCTTTAGTGCAC+CGG - chr3_1:58096394-58096413 Msa0364660:intron 55.0%
GGTTGTCCCGAACTTTGGTG+TGG - chr3_1:58098282-58098301 Msa0364660:intron 55.0%
AGCAACATTGGACCTGCTGC+AGG - chr3_1:58098367-58098386 Msa0364660:intron 55.0%
GAAGCTAGACGCTGCTCCAA+TGG + chr3_1:58098917-58098936 None:intergenic 55.0%
!! GTTTTCGGAGCTTTGGTCGG+GGG + chr3_1:58100095-58100114 None:intergenic 55.0%
GCTGTCATGCTCATCTGCAC+CGG - chr3_1:58100457-58100476 Msa0364660:intron 55.0%
!! CTGCACCGGTGTTTTTGCAG+TGG - chr3_1:58100471-58100490 Msa0364660:intron 55.0%
! GGGGTATCAACACCTCCTGC+AGG + chr3_1:58094561-58094580 None:intergenic 60.0%
! CAAATGGTGGGACCCCTTCC+CGG - chr3_1:58096362-58096381 Msa0364660:five_prime_UTR 60.0%
! TGCGGGAGCTTTAGTGCACC+GGG - chr3_1:58096395-58096414 Msa0364660:intron 60.0%
CGGGAAGGGGTCCCACCATT+TGG + chr3_1:58096364-58096383 None:intergenic 65.0%
CATACGCACGGTCCGGGAAG+GGG + chr3_1:58096377-58096396 None:intergenic 65.0%
GCATACGCACGGTCCGGGAA+GGG + chr3_1:58096378-58096397 None:intergenic 65.0%
CTTCCCGGACCGTGCGTATG+CGG - chr3_1:58096377-58096396 Msa0364660:five_prime_UTR 65.0%
TTCCCGGACCGTGCGTATGC+GGG - chr3_1:58096378-58096397 Msa0364660:five_prime_UTR 65.0%
CGCATACGCACGGTCCGGGA+AGG + chr3_1:58096379-58096398 None:intergenic 70.0%
CTCCCGCATACGCACGGTCC+GGG + chr3_1:58096383-58096402 None:intergenic 70.0%
GCTCCCGCATACGCACGGTC+CGG + chr3_1:58096384-58096403 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 58094434 58100825 58094434 ID=Msa0364660;Name=Msa0364660
chr3_1 mRNA 58094434 58100825 58094434 ID=Msa0364660-mRNA-1;Parent=Msa0364660;Name=Msa0364660-mRNA-1;_AED=0.30;_eAED=0.30;_QI=1040|0.7|0.54|1|0.6|0.63|11|282|78
chr3_1 exon 58094434 58095209 58094434 ID=Msa0364660-mRNA-1:exon:10962;Parent=Msa0364660-mRNA-1
chr3_1 exon 58095806 58095864 58095806 ID=Msa0364660-mRNA-1:exon:10961;Parent=Msa0364660-mRNA-1
chr3_1 exon 58096310 58096404 58096310 ID=Msa0364660-mRNA-1:exon:10960;Parent=Msa0364660-mRNA-1
chr3_1 exon 58096757 58096780 58096757 ID=Msa0364660-mRNA-1:exon:10959;Parent=Msa0364660-mRNA-1
chr3_1 exon 58096871 58097009 58096871 ID=Msa0364660-mRNA-1:exon:10958;Parent=Msa0364660-mRNA-1
chr3_1 exon 58098375 58098527 58098375 ID=Msa0364660-mRNA-1:exon:10957;Parent=Msa0364660-mRNA-1
chr3_1 exon 58099301 58099308 58099301 ID=Msa0364660-mRNA-1:exon:10956;Parent=Msa0364660-mRNA-1
chr3_1 exon 58099869 58099940 58099869 ID=Msa0364660-mRNA-1:exon:10955;Parent=Msa0364660-mRNA-1
chr3_1 exon 58100409 58100446 58100409 ID=Msa0364660-mRNA-1:exon:10954;Parent=Msa0364660-mRNA-1
chr3_1 exon 58100538 58100580 58100538 ID=Msa0364660-mRNA-1:exon:10953;Parent=Msa0364660-mRNA-1
chr3_1 exon 58100674 58100825 58100674 ID=Msa0364660-mRNA-1:exon:10952;Parent=Msa0364660-mRNA-1
chr3_1 five_prime_UTR 58100674 58100825 58100674 ID=Msa0364660-mRNA-1:five_prime_utr;Parent=Msa0364660-mRNA-1
chr3_1 five_prime_UTR 58100538 58100580 58100538 ID=Msa0364660-mRNA-1:five_prime_utr;Parent=Msa0364660-mRNA-1
chr3_1 five_prime_UTR 58100409 58100446 58100409 ID=Msa0364660-mRNA-1:five_prime_utr;Parent=Msa0364660-mRNA-1
chr3_1 five_prime_UTR 58099869 58099940 58099869 ID=Msa0364660-mRNA-1:five_prime_utr;Parent=Msa0364660-mRNA-1
chr3_1 five_prime_UTR 58099301 58099308 58099301 ID=Msa0364660-mRNA-1:five_prime_utr;Parent=Msa0364660-mRNA-1
chr3_1 five_prime_UTR 58098375 58098527 58098375 ID=Msa0364660-mRNA-1:five_prime_utr;Parent=Msa0364660-mRNA-1
chr3_1 five_prime_UTR 58096871 58097009 58096871 ID=Msa0364660-mRNA-1:five_prime_utr;Parent=Msa0364660-mRNA-1
chr3_1 five_prime_UTR 58096757 58096780 58096757 ID=Msa0364660-mRNA-1:five_prime_utr;Parent=Msa0364660-mRNA-1
chr3_1 five_prime_UTR 58096310 58096404 58096310 ID=Msa0364660-mRNA-1:five_prime_utr;Parent=Msa0364660-mRNA-1
chr3_1 five_prime_UTR 58095806 58095864 58095806 ID=Msa0364660-mRNA-1:five_prime_utr;Parent=Msa0364660-mRNA-1
chr3_1 five_prime_UTR 58094953 58095209 58094953 ID=Msa0364660-mRNA-1:five_prime_utr;Parent=Msa0364660-mRNA-1
chr3_1 CDS 58094716 58094952 58094716 ID=Msa0364660-mRNA-1:cds;Parent=Msa0364660-mRNA-1
chr3_1 three_prime_UTR 58094434 58094715 58094434 ID=Msa0364660-mRNA-1:three_prime_utr;Parent=Msa0364660-mRNA-1
Gene Sequence

>Msa0364660

ATGAATACATTGTTCGCGAGGGAAAAATTATACACAAGCAATCTGGTGATTTATTTCATACGAAAAATGACTCTGAAGATGCCAAGTGGATGTTTTGTAATGAGATTTTGTAGCTGGTCTGTTCGGTTGTTTTTATTGTGTCATTCTTCGGCTGTCATGCTCATCTGCACCGGTGTTTTTGCAGTGGTTAGGATGGTTTATGTGTCTCGGAAGTTGGAATTGGATCAAGCTGCTTGA
Protein sequence

>Msa0364660

MNTLFAREKLYTSNLVIYFIRKMTLKMPSGCFVMRFCSWSVRLFLLCHSSAVMLICTGVFAVVRMVYVSRKLELDQAA*