AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0365270

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0365270 MtrunA17_Chr3g0105051 96.214 1083 38 2 1 1083 1 1080 0.0 2149
Msa0365270 MtrunA17_Chr5g0430201 56.915 1128 403 28 1 1082 1 1091 0.0 1102
Msa0365270 MtrunA17_Chr3g0113631 38.259 1137 586 33 1 1080 1 1078 0.0 611
Msa0365270 MtrunA17_Chr4g0073021 28.486 1169 618 46 1 1082 1 1038 5.14e-107 359
Msa0365270 MtrunA17_Chr1g0197121 30.755 530 294 20 6 507 7 491 2.93e-41 164
Msa0365270 MtrunA17_Chr7g0235711 37.069 232 130 4 602 828 13 233 4.85e-36 137
Msa0365270 MtrunA17_Chr1g0177421 27.599 529 300 22 1 502 1 473 2.90e-29 125
Msa0365270 MtrunA17_Chr1g0177421 28.384 229 153 4 626 846 510 735 2.02e-11 68.6
Msa0365270 MtrunA17_Chr2g0298801 30.435 552 289 23 1 509 1 500 6.04e-29 125
Msa0365270 MtrunA17_Chr4g0071701 45.349 172 79 3 9 179 9 166 1.44e-24 110
Msa0365270 MtrunA17_Chr4g0071701 26.510 298 177 9 685 977 449 709 9.95e-11 66.2
Msa0365270 MtrunA17_Chr4g0061371 29.189 185 103 5 673 845 556 724 1.19e-11 69.3
Msa0365270 MtrunA17_Chr3g0137071 31.395 172 96 6 683 845 656 814 4.96e-11 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0365270 AT2G29970.1 42.301 1104 512 34 1 1082 1 1001 0.0 716
Msa0365270 AT1G07200.2 40.450 1110 500 29 1 1082 1 977 0.0 690
Msa0365270 AT2G40130.1 44.124 485 211 17 1 465 1 445 8.35e-102 342
Msa0365270 AT2G40130.1 33.085 402 221 11 680 1070 534 898 3.21e-46 180
Msa0365270 AT2G40130.2 44.124 485 211 17 1 465 1 445 8.69e-102 342
Msa0365270 AT2G40130.2 33.085 402 221 11 680 1070 537 901 3.37e-46 180
Msa0365270 AT5G57710.1 29.972 1081 575 41 1 1038 1 942 2.14e-95 326
Msa0365270 AT1G07200.1 34.809 497 239 11 592 1082 3 420 6.00e-68 234
Msa0365270 AT4G30350.1 30.162 557 296 21 1 513 1 508 2.18e-39 159
Msa0365270 AT4G30350.1 27.877 391 221 12 675 1059 565 900 1.93e-35 146
Msa0365270 AT3G52490.1 29.032 527 300 20 7 516 7 476 6.49e-38 154
Msa0365270 AT3G52490.1 26.471 204 141 3 653 847 544 747 8.28e-13 73.6
Msa0365270 AT5G57130.1 26.016 615 301 21 1 506 1 570 7.06e-26 115
Msa0365270 AT4G29920.1 45.652 184 82 4 1 179 1 171 7.04e-25 112
Msa0365270 AT4G29920.2 45.652 184 82 4 1 179 1 171 7.43e-25 112
Msa0365270 AT1G74310.2 28.108 185 105 5 673 845 553 721 4.02e-11 67.8
Msa0365270 AT1G74310.1 28.108 185 105 5 673 845 553 721 5.65e-11 67.4

Find 240 sgRNAs with CRISPR-Local

Find 401 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAAGGTTGTTGGAGGTTTA+TGG 0.130799 3_1:+59208144 Msa0365270:CDS
AATATTTCCCAAACATTAAC+AGG 0.207831 3_1:+59210789 Msa0365270:CDS
TTATTTAATTTGCAGCTTAA+TGG 0.221920 3_1:+59209516 Msa0365270:intron
GTTTGGGAAATATTGATTTC+AGG 0.232339 3_1:-59210780 None:intergenic
AATCTGTGGTGATGGGATTA+AGG 0.232976 3_1:-59211061 None:intergenic
GTACTTGCAGAAACTCTATT+TGG 0.237968 3_1:+59211470 Msa0365270:CDS
TATTTAATTTGCAGCTTAAT+GGG 0.240310 3_1:+59209517 Msa0365270:intron
ACTGGTGTTGTTCTAAGTTT+TGG 0.243911 3_1:+59208042 Msa0365270:CDS
TCTTATGATCACTTAGTTTC+GGG 0.247752 3_1:-59211130 None:intergenic
TTCTTATGATCACTTAGTTT+CGG 0.248562 3_1:-59211131 None:intergenic
AAAACGACGCAGTTTGATTC+TGG 0.270613 3_1:-59207525 None:intergenic
AGACTCCGACAGAGAGTTCT+AGG 0.272563 3_1:-59207330 None:intergenic
AGAGGCGTCACGGTCGTATC+TGG 0.276445 3_1:+59212033 Msa0365270:CDS
TTTGAGTTTGTTATTGGAAA+TGG 0.276607 3_1:+59207955 Msa0365270:CDS
CATCACCACAGATTTGGTTT+TGG 0.281146 3_1:+59211070 Msa0365270:CDS
AGAGTTAAAGATGATGGATT+TGG 0.286880 3_1:-59209592 None:intergenic
CTTTCCTCGGGAAATATCTT+TGG 0.291800 3_1:-59211818 None:intergenic
CATTGTGATGTGATTTCTTA+TGG 0.302617 3_1:+59212626 Msa0365270:three_prime_UTR
CTTGGAACCCTGTTAATGTT+TGG 0.302700 3_1:-59210797 None:intergenic
GTATCAAAAGGTTGTGAAAA+TGG 0.303380 3_1:-59210945 None:intergenic
GATTTCCTTGCACAAATTGA+TGG 0.308028 3_1:+59212142 Msa0365270:CDS
CAAACTTGTGTTATCTTCAT+TGG 0.313695 3_1:-59210685 None:intergenic
GAGTATAGTCCTTCCATAGA+AGG 0.320882 3_1:-59208288 None:intergenic
GGTGGTGGTGGCGGCGGTGG+TGG 0.325239 3_1:-59207661 None:intergenic
GTGGATTCAGATAGAGGATT+AGG 0.326823 3_1:+59209724 Msa0365270:CDS
TAGAACAGTGGATTTCATTA+AGG 0.328940 3_1:-59210863 None:intergenic
TCTTTAGACATGTAGGGAAT+TGG 0.329298 3_1:-59210888 None:intergenic
CTCAGTGGATTTAAGCTCTA+AGG 0.329643 3_1:+59211511 Msa0365270:CDS
AGGTTTATGGTGGGAAGATT+TGG 0.330662 3_1:+59208157 Msa0365270:CDS
AGGAAGAGGATCTAGCAATT+TGG 0.330709 3_1:-59211220 None:intergenic
AAACAATTTCAAACACCATT+TGG 0.331958 3_1:+59212229 Msa0365270:CDS
GACATCTGCTACTCCTTCTA+TGG 0.334602 3_1:+59208275 Msa0365270:CDS
TAATCCCATCACCACAGATT+TGG 0.341157 3_1:+59211064 Msa0365270:CDS
TCACTTAGTTTCGGGGTATC+TGG 0.349818 3_1:-59211122 None:intergenic
TTCATTCCATCAGAATAATC+AGG 0.350311 3_1:-59212678 None:intergenic
TTGGAACCCTGTTAATGTTT+GGG 0.351629 3_1:-59210796 None:intergenic
AGCTGAATATGTAATGAAAT+TGG 0.356412 3_1:+59212402 Msa0365270:CDS
TACATGTTCAGCTTTATCTT+TGG 0.361577 3_1:-59210979 None:intergenic
ATTTGGTTGGTGGGTGTAGC+AGG 0.364020 3_1:+59208174 Msa0365270:CDS
TTGAGTTTGTTATTGGAAAT+GGG 0.369479 3_1:+59207956 Msa0365270:CDS
ATTTGTATAATGTAGCTTGT+AGG 0.370139 3_1:+59212532 Msa0365270:three_prime_UTR
ATTTCCCTACCATGTGAGTA+TGG 0.370800 3_1:-59211719 None:intergenic
GATGGTGGTGGTGGCGGCGG+TGG 0.370868 3_1:-59207664 None:intergenic
GTTTGCTTGAGAGCGTTTAA+TGG 0.377128 3_1:-59207443 None:intergenic
TGTAGTAAATGGAAGCTATC+TGG 0.381763 3_1:-59207478 None:intergenic
AAGTGGAGACGAGGAGAGTA+AGG 0.382277 3_1:-59207301 None:intergenic
CTTTCACCGTTCTCCTCCTC+CGG 0.389204 3_1:+59207696 Msa0365270:CDS
GTGTTGTGTTTGTTGTTTCA+AGG 0.391518 3_1:+59208118 Msa0365270:CDS
GCTGCATTATCTGTAGTAAA+TGG 0.394673 3_1:-59207489 None:intergenic
ACATAGATGACTTGTGGTTA+AGG 0.398461 3_1:-59211037 None:intergenic
AGCTTCAAGGATTCTTTCCT+CGG 0.401396 3_1:-59211831 None:intergenic
ATCTGTGGTGATGGGATTAA+GGG 0.401702 3_1:-59211060 None:intergenic
TCTTCGGATTGCAGAGGAAA+TGG 0.405547 3_1:+59210718 Msa0365270:CDS
CTTGTAGGGTATATATCATT+TGG 0.406781 3_1:+59212547 Msa0365270:three_prime_UTR
AGTTTGAATGCTAAGATCTT+CGG 0.408390 3_1:+59210702 Msa0365270:CDS
CATTGGCGCGCTGTGCTAAC+CGG 0.409460 3_1:-59207118 None:intergenic
AAATGGGAGTGAGGAGAAGA+TGG 0.412598 3_1:+59207972 Msa0365270:CDS
TTCAAGGTTAACAAGGTTGT+TGG 0.414305 3_1:+59208134 Msa0365270:CDS
TTTGTATAATGTAGCTTGTA+GGG 0.419515 3_1:+59212533 Msa0365270:three_prime_UTR
GTTAATGTGGATTCAGATAG+AGG 0.421276 3_1:+59209718 Msa0365270:CDS
CGCGCTGTGCTAACCGGCGT+CGG 0.421555 3_1:-59207112 None:intergenic
AGCACAAAATTTGATCCAAA+TGG 0.422922 3_1:-59212244 None:intergenic
GCGTGGAGAGAGGTTGTTTG+AGG 0.426993 3_1:-59207205 None:intergenic
GGTGGGAAGATTTGGTTGGT+GGG 0.428555 3_1:+59208165 Msa0365270:CDS
TGAAAATGGTAACATCTGTT+TGG 0.429341 3_1:-59210931 None:intergenic
TTAATGCAAGTGAGTGTGTT+TGG 0.430699 3_1:-59206922 None:intergenic
ATTATGACACTTTGTAGATC+AGG 0.432244 3_1:+59211356 Msa0365270:CDS
TGGTGGGAAGATTTGGTTGG+TGG 0.435896 3_1:+59208164 Msa0365270:CDS
TTCCGACGGAAAATTTGAAA+TGG 0.437639 3_1:+59211256 Msa0365270:CDS
TCGAATGTCACGATGTGCTT+AGG 0.443577 3_1:+59211561 Msa0365270:CDS
TTCAGATAGAGGATTAGGTT+TGG 0.444163 3_1:+59209729 Msa0365270:CDS
TTCCACGAGGGGTTTCGATT+CGG 0.446189 3_1:+59210825 Msa0365270:CDS
GAAGATGGTGGTGGTGGCGG+CGG 0.447823 3_1:-59207667 None:intergenic
CGTGGAGAGAGGTTGTTTGA+GGG 0.449121 3_1:-59207204 None:intergenic
ACGAGGAGAGTAAGGGAAGG+TGG 0.453301 3_1:-59207293 None:intergenic
ATCAGAATAATCAGGAGAAC+TGG 0.457425 3_1:-59212670 None:intergenic
GTGAGGGTTTCAAAGAGAAA+TGG 0.459717 3_1:+59211923 Msa0365270:CDS
TTGTTACAAGCAATAAGAAC+AGG 0.461715 3_1:+59211689 Msa0365270:CDS
GAAGCATCTTCAGCACTTGT+CGG 0.464177 3_1:+59211151 Msa0365270:CDS
TCTTCTGTGTTCAAAGTTGG+CGG 0.464178 3_1:+59211773 Msa0365270:CDS
GCCGGAGGAGACGGCGGCGG+TGG 0.464589 3_1:-59207380 None:intergenic
AAGTTTACCTTGGTTACAAA+AGG 0.464777 3_1:+59209696 Msa0365270:CDS
TTAGCTCAAAGTGGAAAAGT+TGG 0.464881 3_1:+59207877 Msa0365270:CDS
GCCGTCTCCTCCGGCGATGA+CGG 0.465076 3_1:+59207388 Msa0365270:CDS
GCATAAACACCCATCAAAAG+AGG 0.465899 3_1:-59207826 None:intergenic
GTTGAACAAAGTTTATGTAC+TGG 0.466401 3_1:+59208024 Msa0365270:CDS
CATTCGAAAATCGAGTTCAA+TGG 0.467152 3_1:-59211545 None:intergenic
GGATGAAGATGGTGAAGAGA+AGG 0.467340 3_1:-59206859 None:intergenic
TAATGCAAGTGAGTGTGTTT+GGG 0.468882 3_1:-59206921 None:intergenic
CAGAGATACTTGCAGCTGCT+TGG 0.469125 3_1:+59212290 Msa0365270:CDS
ACCACCGCCGCCGTCTCCTC+CGG 0.470469 3_1:+59207379 Msa0365270:CDS
ACCTCTTCTGTGTTCAAAGT+TGG 0.473166 3_1:+59211770 Msa0365270:CDS
CAAGTGAGTGTGTTTGGGTA+TGG 0.474544 3_1:-59206916 None:intergenic
GCCGTCATCGCCGGAGGAGA+CGG 0.474599 3_1:-59207389 None:intergenic
TGATGATCCTATAGTGAGTA+GGG 0.474645 3_1:+59207585 Msa0365270:CDS
TGAACCGGACCGGTTTGAAA+CGG 0.475140 3_1:+59207735 Msa0365270:CDS
CGGCGATGACGGCGGCCCAC+CGG 0.475553 3_1:+59207399 Msa0365270:CDS
AGTTCTCCTGATTATTCTGA+TGG 0.476971 3_1:+59212672 Msa0365270:three_prime_UTR
TGCACAAATTGATGGAAAAG+TGG 0.479114 3_1:+59212150 Msa0365270:CDS
GTATCTGGCTCATGAGTAAC+CGG 0.479318 3_1:-59211107 None:intergenic
GCACTAAGAGTAGTATCAAA+AGG 0.479932 3_1:-59210957 None:intergenic
TTGTAACTCTTTAGACATGT+AGG 0.480247 3_1:-59210895 None:intergenic
AACATCTGTTTGGATGGAAA+TGG 0.480655 3_1:-59210921 None:intergenic
GAAATATTGATTTCAGGTAA+TGG 0.481282 3_1:-59210774 None:intergenic
CAAAACCAAATCTGTGGTGA+TGG 0.481333 3_1:-59211069 None:intergenic
ATTATTTGATATTGAAGTTG+AGG 0.483296 3_1:-59207042 None:intergenic
GATTGGATTGAACATGTTCT+CGG 0.483455 3_1:+59212340 Msa0365270:CDS
ACCCCTCGTGGAATGGAGCT+TGG 0.485678 3_1:-59210815 None:intergenic
TCACAAAGAGTTAAAGATGA+TGG 0.485913 3_1:-59209598 None:intergenic
ACAGTCGTGGATTATATTGC+TGG 0.487204 3_1:+59211590 Msa0365270:CDS
AATGGGAGTGAGGAGAAGAT+GGG 0.488956 3_1:+59207973 Msa0365270:CDS
CGGTGGGCCGCCGTCATCGC+CGG 0.490576 3_1:-59207398 None:intergenic
GAGGGGTTTCGATTCGGTAG+AGG 0.491158 3_1:+59210831 Msa0365270:CDS
TTGTTGTGGGGAGACGGTCG+AGG 0.493580 3_1:-59207354 None:intergenic
AGAGTTCTAGGGCACGGAAG+TGG 0.493582 3_1:-59207318 None:intergenic
CTAGAAGATGGTGGTGGTGG+CGG 0.497072 3_1:-59207670 None:intergenic
TAGTTCACGTTAATTCTAGC+TGG 0.497870 3_1:-59212475 None:intergenic
TTTGTGGAAGAGCAAGCTAC+AGG 0.498965 3_1:+59212442 Msa0365270:CDS
GTGGAAAAGAAGCCACCAAA+TGG 0.501664 3_1:-59209550 None:intergenic
AATCGAAACCCCTCGTGGAA+TGG 0.506142 3_1:-59210822 None:intergenic
CTAACCGGCGTCGGCATCAC+CGG 0.506372 3_1:-59207103 None:intergenic
GCAAGTAAATCAAAATTGAA+TGG 0.507263 3_1:-59212181 None:intergenic
CGGACCGGTTTGAAACGGTT+CGG 0.508642 3_1:+59207740 Msa0365270:CDS
TGTAACTCTTTAGACATGTA+GGG 0.509316 3_1:-59210894 None:intergenic
CTGCTTCGTCAGTTAAACAT+TGG 0.510619 3_1:-59207135 None:intergenic
GCAGGCGGCGCGTAGAGTAT+TGG 0.510804 3_1:-59207254 None:intergenic
CATCATCAACAAGTTTACCT+TGG 0.511750 3_1:+59209686 Msa0365270:CDS
TTGGTTACAAAAGGTTAATG+TGG 0.518434 3_1:+59209705 Msa0365270:CDS
AGGTTGTTGGAGGTTTATGG+TGG 0.519138 3_1:+59208147 Msa0365270:CDS
GAAAGTGAGAAGGATGAAGA+TGG 0.520598 3_1:-59206870 None:intergenic
AATGGTAACATCTGTTTGGA+TGG 0.522424 3_1:-59210927 None:intergenic
AAGGTTAACAAGGTTGTTGG+AGG 0.523476 3_1:+59208137 Msa0365270:CDS
TTTATATTCAAACGAAGTGA+AGG 0.525694 3_1:+59212727 Msa0365270:three_prime_UTR
TTGATGATCCTATAGTGAGT+AGG 0.529193 3_1:+59207584 Msa0365270:CDS
TTTGGATTTCTGAAATCAGA+AGG 0.534039 3_1:-59209574 None:intergenic
GCTAGATCCTCTTCCTACTC+AGG 0.534790 3_1:+59211227 Msa0365270:CDS
GAAGGAGTAGCAGATGTCAC+AGG 0.536186 3_1:-59208270 None:intergenic
AATTTCCATACTCACATGGT+AGG 0.537595 3_1:+59211714 Msa0365270:CDS
TTATGGTGGGAAGATTTGGT+TGG 0.537707 3_1:+59208161 Msa0365270:CDS
CTTGTTGATGATGAAGAAGA+AGG 0.537875 3_1:-59209676 None:intergenic
GCTTCAAGGATTCTTTCCTC+GGG 0.538993 3_1:-59211830 None:intergenic
AAGTGAGTGTGTTTGGGTAT+GGG 0.539932 3_1:-59206915 None:intergenic
TGTTATTGGAAATGGGAGTG+AGG 0.540969 3_1:+59207963 Msa0365270:CDS
GAAGATGGTGAAGAGAAGGA+TGG 0.542180 3_1:-59206855 None:intergenic
TATGTAATATTGAACCGGAC+CGG 0.543055 3_1:+59207725 Msa0365270:CDS
AATGTCACGATGTGCTTAGG+AGG 0.549065 3_1:+59211564 Msa0365270:CDS
GGTGGCGCGTGAGCATGAGC+AGG 0.550220 3_1:-59207272 None:intergenic
CGAACCGAACCGTTTCAAAC+CGG 0.553501 3_1:-59207744 None:intergenic
AATCTAGAAGATGGTGGTGG+TGG 0.553740 3_1:-59207673 None:intergenic
AAAGTAAAGCGGAGATAGCG+TGG 0.556221 3_1:-59207222 None:intergenic
TTTAACCCATCAAGCTCAGT+AGG 0.556513 3_1:-59207907 None:intergenic
ACCGGTGTCAAACTCTCTCA+TGG 0.558072 3_1:+59207417 Msa0365270:CDS
ATGAGAGAGTTTGACACCGG+TGG 0.559965 3_1:-59207415 None:intergenic
ATCGCCGGAGGAGACGGCGG+CGG 0.562232 3_1:-59207383 None:intergenic
AAAACCAAATCTGTGGTGAT+GGG 0.562405 3_1:-59211068 None:intergenic
GAGAGGAAGAGAAAGTGAGA+AGG 0.563444 3_1:-59206880 None:intergenic
CTAGAAGAGGAAGCGGAGGA+TGG 0.565212 3_1:+59212070 Msa0365270:CDS
TTTATAGAGTTAGCTCAAAG+TGG 0.565828 3_1:+59207868 Msa0365270:CDS
CGGTGAAAGAATCTAGAAGA+TGG 0.569218 3_1:-59207682 None:intergenic
ATTTCTGAAATCAGAAGGTG+TGG 0.569693 3_1:-59209569 None:intergenic
AAAAGTTTGGTGGCAAGATG+AGG 0.571818 3_1:+59211313 Msa0365270:CDS
GGCGGCGCGTAGAGTATTGG+AGG 0.572174 3_1:-59207251 None:intergenic
CTTATGATCACTTAGTTTCG+GGG 0.573967 3_1:-59211129 None:intergenic
ATTTCCATACTCACATGGTA+GGG 0.574024 3_1:+59211715 Msa0365270:CDS
GATGATGATGTTATTGATGA+TGG 0.574381 3_1:+59208096 Msa0365270:CDS
ATGGGAGTGAGGAGAAGATG+GGG 0.574724 3_1:+59207974 Msa0365270:CDS
GATGACTTGTGGTTAAGGAA+AGG 0.575003 3_1:-59211032 None:intergenic
TCACGTTAATTCTAGCTGGA+AGG 0.576437 3_1:-59212471 None:intergenic
GGAGGGGAGAGAAAGTAAAG+CGG 0.576511 3_1:-59207233 None:intergenic
GGCGCGTGAGCATGAGCAGG+CGG 0.578477 3_1:-59207269 None:intergenic
ATTATGACCTGAGTAGGAAG+AGG 0.578817 3_1:-59211234 None:intergenic
GAGACGAGGAGAGTAAGGGA+AGG 0.582274 3_1:-59207296 None:intergenic
TTTGAATATGCCTCTAGAAG+AGG 0.586648 3_1:+59212057 Msa0365270:CDS
TCCAAGCTCCATTCCACGAG+GGG 0.587037 3_1:+59210814 Msa0365270:CDS
TATGCCTCTAGAAGAGGAAG+CGG 0.589670 3_1:+59212063 Msa0365270:CDS
GCCTCTAGAAGAGGAAGCGG+AGG 0.590092 3_1:+59212066 Msa0365270:CDS
CTTGCCGGTGATGCCGACGC+CGG 0.590743 3_1:+59207099 Msa0365270:exon
ATCACTTGGACATGCTTCTG+AGG 0.590808 3_1:+59211874 Msa0365270:CDS
AGGGAATTGGATTAGAACAG+TGG 0.591231 3_1:-59210875 None:intergenic
TGAGAGAGTTTGACACCGGT+GGG 0.591649 3_1:-59207414 None:intergenic
TGTTGTGGGGAGACGGTCGA+GGG 0.592218 3_1:-59207353 None:intergenic
ATTTAATTTGCAGCTTAATG+GGG 0.592243 3_1:+59209518 Msa0365270:intron
GACAATGAAACATAACAAAG+AGG 0.596834 3_1:+59212015 Msa0365270:CDS
GGGGTTGAGATTTGATGAAG+TGG 0.596851 3_1:+59207993 Msa0365270:CDS
GTTCGATGAGAATTCAAGAA+GGG 0.597462 3_1:+59207762 Msa0365270:CDS
GCTGATAATTATGTGAATGT+AGG 0.597746 3_1:+59209652 Msa0365270:CDS
GGAGAGAGGTTGTTTGAGGG+TGG 0.597815 3_1:-59207201 None:intergenic
GGTTGTTGGAGGTTTATGGT+GGG 0.597977 3_1:+59208148 Msa0365270:CDS
TGTCAAATTGAACTATCACT+TGG 0.598699 3_1:+59211860 Msa0365270:CDS
TTTCTTGGGCCAGATAGAGT+CGG 0.600021 3_1:+59211428 Msa0365270:CDS
AAGGACTATACTCTAAATCC+AGG 0.600682 3_1:+59208298 Msa0365270:CDS
TCAAGAAACACAACCGAACG+TGG 0.601412 3_1:-59211629 None:intergenic
CGAACCGTTTCAAACCGGTC+CGG 0.608717 3_1:-59207739 None:intergenic
TAAGGGACATAGATGACTTG+TGG 0.609164 3_1:-59211043 None:intergenic
TTGTTGTTTCAAGGTTAACA+AGG 0.611538 3_1:+59208127 Msa0365270:CDS
CAAATGTTAGAGCCGACACA+TGG 0.611870 3_1:+59211399 Msa0365270:CDS
TACCGAATCGAAACCCCTCG+TGG 0.612399 3_1:-59210827 None:intergenic
TAGAGGATTAGGTTTGGCAA+AGG 0.613261 3_1:+59209735 Msa0365270:CDS
GTCTCCTCCGGCGATGACGG+CGG 0.614350 3_1:+59207391 Msa0365270:CDS
TACTCAGGTCATAATTCCGA+CGG 0.614483 3_1:+59211242 Msa0365270:CDS
AGTGGAGACGAGGAGAGTAA+GGG 0.614616 3_1:-59207300 None:intergenic
GCCAACTTTGAACACAGAAG+AGG 0.616374 3_1:-59211771 None:intergenic
CAAACAATGCTTAATCTCAG+TGG 0.616985 3_1:+59211496 Msa0365270:CDS
GTCATCGCCGGAGGAGACGG+CGG 0.618160 3_1:-59207386 None:intergenic
TGGGCCGCCGTCATCGCCGG+AGG 0.622692 3_1:-59207395 None:intergenic
AGCTATCTGGATGACGACGT+TGG 0.622926 3_1:-59207465 None:intergenic
AGCGGAGATAGCGTGGAGAG+AGG 0.622984 3_1:-59207215 None:intergenic
GGGTTGAGATTTGATGAAGT+GGG 0.623856 3_1:+59207994 Msa0365270:CDS
TCTGCTACTCCTTCTATGGA+AGG 0.627338 3_1:+59208279 Msa0365270:CDS
GGTTCGATGAGAATTCAAGA+AGG 0.628261 3_1:+59207761 Msa0365270:CDS
CGACAGAGAGTTCTAGGGCA+CGG 0.628714 3_1:-59207324 None:intergenic
TCCTCCGCTTCCTCTTCTAG+AGG 0.630711 3_1:-59212067 None:intergenic
CGTGCCCTAGAACTCTCTGT+CGG 0.630862 3_1:+59207325 Msa0365270:CDS
GTGGCTACGTCTACGCGCTA+CGG 0.630979 3_1:-59207182 None:intergenic
AACATAACAAAGAGGCGTCA+CGG 0.631267 3_1:+59212023 Msa0365270:CDS
AAGAAAAGAAAACCATGTGT+CGG 0.632597 3_1:-59211411 None:intergenic
CTAAGATCTTCGGATTGCAG+AGG 0.640028 3_1:+59210712 Msa0365270:CDS
TTTGGGAACGACATATACAC+CGG 0.641414 3_1:+59211088 Msa0365270:CDS
TGTGCTGGAAATTGATTACG+AGG 0.645493 3_1:+59212261 Msa0365270:CDS
CGTTCCCAAAACCAAATCTG+TGG 0.646306 3_1:-59211075 None:intergenic
TAGTTCAAAATCATGAAACA+TGG 0.647692 3_1:+59212113 Msa0365270:CDS
ATATAAAATATTCATAAGTG+AGG 0.648047 3_1:-59212711 None:intergenic
GCGGCGCGTAGAGTATTGGA+GGG 0.649141 3_1:-59207250 None:intergenic
GACTCCGACAGAGAGTTCTA+GGG 0.649350 3_1:-59207329 None:intergenic
GTCGGAATTATGACCTGAGT+AGG 0.651946 3_1:-59211240 None:intergenic
TTCCAAGCTCCATTCCACGA+GGG 0.653377 3_1:+59210813 Msa0365270:CDS
TCTCGGAAACAGCTTTGTCG+AGG 0.654210 3_1:+59212357 Msa0365270:CDS
AGGAGAGTAAGGGAAGGTGG+TGG 0.656272 3_1:-59207290 None:intergenic
ATATTTCCCAAACATTAACA+GGG 0.659404 3_1:+59210790 Msa0365270:CDS
ACACTTTGTAGATCAGGCGA+CGG 0.669934 3_1:+59211362 Msa0365270:CDS
GCCATGAGAGAGTTTGACAC+CGG 0.671395 3_1:-59207418 None:intergenic
GGAACCAAAGATATTTCCCG+AGG 0.675037 3_1:+59211814 Msa0365270:CDS
TCAGGCGACGGAAAGCGCAG+TGG 0.676230 3_1:+59211374 Msa0365270:CDS
AGGGCACGGAAGTGGAGACG+AGG 0.677357 3_1:-59207310 None:intergenic
TGAAAGAATCTAGAAGATGG+TGG 0.685445 3_1:-59207679 None:intergenic
GCTTAGGAGGAAGACAGTCG+TGG 0.692506 3_1:+59211577 Msa0365270:CDS
GGTAAATTTCCATACTCACA+TGG 0.692604 3_1:+59211710 Msa0365270:CDS
AAGAATCTAGAAGATGGTGG+TGG 0.695136 3_1:-59207676 None:intergenic
GTTCCAAGCTCCATTCCACG+AGG 0.732442 3_1:+59210812 Msa0365270:CDS
CGGCGCGTAGAGTATTGGAG+GGG 0.743314 3_1:-59207249 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATGATAAATAATTGAA+GGG - chr3_1:59206998-59207017 None:intergenic 10.0%
!! TAAAAATGATAAATAATTGA+AGG - chr3_1:59206999-59207018 None:intergenic 10.0%
!! ACTATGTAATATATATTATA+TGG - chr3_1:59208464-59208483 None:intergenic 10.0%
!!! ATATATGTTTTTACTTTTAT+TGG + chr3_1:59209406-59209425 Msa0365270:intron 10.0%
!!! TATATGTTTTTACTTTTATT+GGG + chr3_1:59209407-59209426 Msa0365270:intron 10.0%
!! TCAATATTACATAAAAAAAC+CGG - chr3_1:59207718-59207737 None:intergenic 15.0%
!!! TTTTTTATGTAATATTGAAC+CGG + chr3_1:59207720-59207739 Msa0365270:CDS 15.0%
!! TTAATTCATAGAAAAGAAAA+AGG - chr3_1:59208832-59208851 None:intergenic 15.0%
!!! ATTAAGAGCATAATTTAATA+AGG + chr3_1:59208847-59208866 Msa0365270:intron 15.0%
!!! TTAAGAGCATAATTTAATAA+GGG + chr3_1:59208848-59208867 Msa0365270:intron 15.0%
!! AAAATACTGAATATGAAATT+TGG + chr3_1:59209219-59209238 Msa0365270:intron 15.0%
!! TATATATACTACATCATAAT+AGG - chr3_1:59209355-59209374 None:intergenic 15.0%
!! TAAAAATGAAACATAATGTT+AGG - chr3_1:59209780-59209799 None:intergenic 15.0%
!!! TTTTTTACTTTTACCATATT+AGG - chr3_1:59209922-59209941 None:intergenic 15.0%
!!! ATACTAAATAGGAAATATTT+TGG - chr3_1:59210179-59210198 None:intergenic 15.0%
!! TATCATAAACAATACTAAAT+AGG - chr3_1:59210190-59210209 None:intergenic 15.0%
!!! TTGTTTATGATATATACTTT+TGG + chr3_1:59210198-59210217 Msa0365270:intron 15.0%
!! ATATAAAATATTCATAAGTG+AGG - chr3_1:59212714-59212733 None:intergenic 15.0%
!! TCATTATAATGAGTTAAAAA+AGG + chr3_1:59212751-59212770 Msa0365270:three_prime_UTR 15.0%
!!! AGGTTTTTTTTTTTTTAGTG+AGG - chr3_1:59207025-59207044 None:intergenic 20.0%
!! ATTATTTGATATTGAAGTTG+AGG - chr3_1:59207045-59207064 None:intergenic 20.0%
!!! GAAATTTTTGAGTTTGTTAT+TGG + chr3_1:59207949-59207968 Msa0365270:CDS 20.0%
!!! ATGTTTATACTAAGTTTTTG+AGG + chr3_1:59208205-59208224 Msa0365270:CDS 20.0%
!! TATGACAAAAAAACAAACAT+AGG - chr3_1:59208387-59208406 None:intergenic 20.0%
!!! TATGTTTGTTTTTTTGTCAT+AGG + chr3_1:59208386-59208405 Msa0365270:intron 20.0%
!!! ATGTTTGTTTTTTTGTCATA+GGG + chr3_1:59208387-59208406 Msa0365270:intron 20.0%
!!! AAAGAAGTGTTATATGATAT+TGG + chr3_1:59208528-59208547 Msa0365270:intron 20.0%
!!! AATGTTCTAAATTATTCAGA+TGG + chr3_1:59208670-59208689 Msa0365270:intron 20.0%
!! TGCAAATTAAATAATGAACA+TGG - chr3_1:59209510-59209529 None:intergenic 20.0%
!!! TTATTTAATTTGCAGCTTAA+TGG + chr3_1:59209516-59209535 Msa0365270:intron 20.0%
!!! TATTTAATTTGCAGCTTAAT+GGG + chr3_1:59209517-59209536 Msa0365270:intron 20.0%
!!! TCTGACTAAATTATTTTAGT+GGG - chr3_1:59209875-59209894 None:intergenic 20.0%
!! TATTTGCATTTGTATATTGT+AGG - chr3_1:59210105-59210124 None:intergenic 20.0%
!!! TTTTCCAATATTAATCTCAA+AGG - chr3_1:59210390-59210409 None:intergenic 20.0%
!! CACAAAAAGAAAAAAATCAT+GGG - chr3_1:59212601-59212620 None:intergenic 20.0%
!! TTATAATGAGTTAAAAAAGG+AGG + chr3_1:59212754-59212773 Msa0365270:three_prime_UTR 20.0%
!!! AATTGAAGGGTTTTTTGTTT+TGG - chr3_1:59206985-59207004 None:intergenic 25.0%
!! AATTTTGAATATATGCTTGC+CGG + chr3_1:59207084-59207103 Msa0365270:five_prime_UTR 25.0%
! ATATTACATAAAAAAACCGG+AGG - chr3_1:59207715-59207734 None:intergenic 25.0%
!!! CTCTATAAACCTTTTTAAAG+CGG - chr3_1:59207857-59207876 None:intergenic 25.0%
!!! TTTGAGTTTGTTATTGGAAA+TGG + chr3_1:59207955-59207974 Msa0365270:CDS 25.0%
!!! TTGAGTTTGTTATTGGAAAT+GGG + chr3_1:59207956-59207975 Msa0365270:CDS 25.0%
!!! CCAAATCTTTTTCAACATTA+GGG - chr3_1:59208236-59208255 None:intergenic 25.0%
!!! TCCAAATCTTTTTCAACATT+AGG - chr3_1:59208237-59208256 None:intergenic 25.0%
! AAAAACCAAAACCAATTGAA+TGG - chr3_1:59208882-59208901 None:intergenic 25.0%
!!! TTGTTAAAGTATTGCTCTAA+TGG + chr3_1:59208970-59208989 Msa0365270:intron 25.0%
! TCAAAGTATGCATTGAAATT+TGG - chr3_1:59209176-59209195 None:intergenic 25.0%
! AATAGGCTATAGAATTTGAT+AGG - chr3_1:59209338-59209357 None:intergenic 25.0%
! GATGTAGTATATATATTGCT+TGG + chr3_1:59209360-59209379 Msa0365270:intron 25.0%
!! GCTTGGAATATATTTACTTT+TGG + chr3_1:59209377-59209396 Msa0365270:intron 25.0%
!!! ATTTAATTTGCAGCTTAATG+GGG + chr3_1:59209518-59209537 Msa0365270:intron 25.0%
!!! CTCTGACTAAATTATTTTAG+TGG - chr3_1:59209876-59209895 None:intergenic 25.0%
! CACTAAAATAATTTAGTCAG+AGG + chr3_1:59209874-59209893 Msa0365270:intron 25.0%
! TTATATTTCCATGTGTACTT+TGG + chr3_1:59210078-59210097 Msa0365270:intron 25.0%
!!! TAGGAAATATTTTGGCTTTA+TGG - chr3_1:59210171-59210190 None:intergenic 25.0%
!!! ACTTCCTTTGAGATTAATAT+TGG + chr3_1:59210383-59210402 Msa0365270:intron 25.0%
! AAACAAAGAGAGAAAACAAA+TGG - chr3_1:59210552-59210571 None:intergenic 25.0%
!!! GAAATATTGATTTCAGGTAA+TGG - chr3_1:59210777-59210796 None:intergenic 25.0%
! AATATTTCCCAAACATTAAC+AGG + chr3_1:59210789-59210808 Msa0365270:CDS 25.0%
! ATATTTCCCAAACATTAACA+GGG + chr3_1:59210790-59210809 Msa0365270:CDS 25.0%
!!! ACATCGAATTTTGAAACTTT+CGG - chr3_1:59211005-59211024 None:intergenic 25.0%
! TTCTTATGATCACTTAGTTT+CGG - chr3_1:59211134-59211153 None:intergenic 25.0%
! AACTTCTTATCGAAAAAGTT+TGG + chr3_1:59211300-59211319 Msa0365270:CDS 25.0%
! TAGTTCAAAATCATGAAACA+TGG + chr3_1:59212113-59212132 Msa0365270:CDS 25.0%
! GCAAGTAAATCAAAATTGAA+TGG - chr3_1:59212184-59212203 None:intergenic 25.0%
! AAACAATTTCAAACACCATT+TGG + chr3_1:59212229-59212248 Msa0365270:CDS 25.0%
! AGCTGAATATGTAATGAAAT+TGG + chr3_1:59212402-59212421 Msa0365270:CDS 25.0%
!!! TAAATGTGAAAGCATTTTTG+TGG + chr3_1:59212426-59212445 Msa0365270:CDS 25.0%
!! ATTTGTATAATGTAGCTTGT+AGG + chr3_1:59212532-59212551 Msa0365270:three_prime_UTR 25.0%
!! TTTGTATAATGTAGCTTGTA+GGG + chr3_1:59212533-59212552 Msa0365270:three_prime_UTR 25.0%
!!! TTGGTAGTTATAGCATTTTA+AGG + chr3_1:59212566-59212585 Msa0365270:three_prime_UTR 25.0%
! CCACAAAAAGAAAAAAATCA+TGG - chr3_1:59212602-59212621 None:intergenic 25.0%
!!! CCATGATTTTTTTCTTTTTG+TGG + chr3_1:59212599-59212618 Msa0365270:three_prime_UTR 25.0%
! TTTATATTCAAACGAAGTGA+AGG + chr3_1:59212727-59212746 Msa0365270:three_prime_UTR 25.0%
ATGGGAAAAAATTTAGTGAG+AGG - chr3_1:59206900-59206919 None:intergenic 30.0%
! TAAGAGAAATCCTCTTTTGA+TGG + chr3_1:59207816-59207835 Msa0365270:CDS 30.0%
! AAGAGAAATCCTCTTTTGAT+GGG + chr3_1:59207817-59207836 Msa0365270:CDS 30.0%
!! ATGCAAAAACCGCTTTAAAA+AGG + chr3_1:59207845-59207864 Msa0365270:CDS 30.0%
TTTATAGAGTTAGCTCAAAG+TGG + chr3_1:59207868-59207887 Msa0365270:CDS 30.0%
GTTGAACAAAGTTTATGTAC+TGG + chr3_1:59208024-59208043 Msa0365270:CDS 30.0%
! GATGATGATGTTATTGATGA+TGG + chr3_1:59208096-59208115 Msa0365270:CDS 30.0%
!! TTGTTGTTTCAAGGTTAACA+AGG + chr3_1:59208127-59208146 Msa0365270:CDS 30.0%
CCCTAATGTTGAAAAAGATT+TGG + chr3_1:59208233-59208252 Msa0365270:CDS 30.0%
AGAAAAAAGAGAAACATACC+TGG - chr3_1:59208319-59208338 None:intergenic 30.0%
! TTCCTTTTCTGTTTCCTTAT+TGG + chr3_1:59208339-59208358 Msa0365270:intron 30.0%
AACCAATAAGGAAACAGAAA+AGG - chr3_1:59208344-59208363 None:intergenic 30.0%
TGACATGTCAATTTGATCAT+TGG + chr3_1:59208602-59208621 Msa0365270:intron 30.0%
!!! CTTGTCTTTAACTTGTTTTG+TGG + chr3_1:59208642-59208661 Msa0365270:intron 30.0%
!!! TATTCAGATGGTTTTGTCTT+TGG + chr3_1:59208682-59208701 Msa0365270:intron 30.0%
TTAGAGTGATAAAGAAGAGT+TGG - chr3_1:59208715-59208734 None:intergenic 30.0%
TTGAATTATAATCTGACTCC+TGG + chr3_1:59208794-59208813 Msa0365270:intron 30.0%
AAAAGGTTATAGAAAGTTCC+AGG - chr3_1:59208815-59208834 None:intergenic 30.0%
!! TGATTCCATTCAATTGGTTT+TGG + chr3_1:59208874-59208893 Msa0365270:intron 30.0%
TCATAACACCAAAAAAGAAG+AGG - chr3_1:59209119-59209138 None:intergenic 30.0%
!!! GTTATGAATGTAGTTTTGTG+CGG + chr3_1:59209132-59209151 Msa0365270:intron 30.0%
ATTTGGATTGTGATCTTGAT+CGG - chr3_1:59209159-59209178 None:intergenic 30.0%
GATAGGTCAACATTGAATAT+AGG - chr3_1:59209321-59209340 None:intergenic 30.0%
!! TTTGGATTTCTGAAATCAGA+AGG - chr3_1:59209577-59209596 None:intergenic 30.0%
!! AGAGTTAAAGATGATGGATT+TGG - chr3_1:59209595-59209614 None:intergenic 30.0%
TCACAAAGAGTTAAAGATGA+TGG - chr3_1:59209601-59209620 None:intergenic 30.0%
GCTGATAATTATGTGAATGT+AGG + chr3_1:59209652-59209671 Msa0365270:CDS 30.0%
AAGTTTACCTTGGTTACAAA+AGG + chr3_1:59209696-59209715 Msa0365270:CDS 30.0%
! ACATTAACCTTTTGTAACCA+AGG - chr3_1:59209706-59209725 None:intergenic 30.0%
TTGGTTACAAAAGGTTAATG+TGG + chr3_1:59209705-59209724 Msa0365270:CDS 30.0%
!! TGCTACTTTCATTCTTACTA+AGG - chr3_1:59209956-59209975 None:intergenic 30.0%
! GATGTTTCTGAAAGTTGATT+AGG + chr3_1:59210043-59210062 Msa0365270:intron 30.0%
AATGCAAATAATGCAATCAG+TGG + chr3_1:59210115-59210134 Msa0365270:intron 30.0%
!! GCTATTTTCATAAGCTATCT+TGG + chr3_1:59210237-59210256 Msa0365270:intron 30.0%
TGACAACTAGAAAGCAATTA+TGG - chr3_1:59210336-59210355 None:intergenic 30.0%
AGTCCTTAAATATCTTGTGT+AGG - chr3_1:59210366-59210385 None:intergenic 30.0%
AGAGAAAACAAATGGCTAAA+CGG - chr3_1:59210544-59210563 None:intergenic 30.0%
CAAACTGAAACAATGAAGTA+TGG - chr3_1:59210622-59210641 None:intergenic 30.0%
TACTTCATTGTTTCAGTTTG+TGG + chr3_1:59210622-59210641 Msa0365270:intron 30.0%
CAAACTTGTGTTATCTTCAT+TGG - chr3_1:59210688-59210707 None:intergenic 30.0%
AGTTTGAATGCTAAGATCTT+CGG + chr3_1:59210702-59210721 Msa0365270:CDS 30.0%
!! GTTTGGGAAATATTGATTTC+AGG - chr3_1:59210783-59210802 None:intergenic 30.0%
! TAGAACAGTGGATTTCATTA+AGG - chr3_1:59210866-59210885 None:intergenic 30.0%
TGTAACTCTTTAGACATGTA+GGG - chr3_1:59210897-59210916 None:intergenic 30.0%
TTGTAACTCTTTAGACATGT+AGG - chr3_1:59210898-59210917 None:intergenic 30.0%
TGAAAATGGTAACATCTGTT+TGG - chr3_1:59210934-59210953 None:intergenic 30.0%
GTATCAAAAGGTTGTGAAAA+TGG - chr3_1:59210948-59210967 None:intergenic 30.0%
! TACATGTTCAGCTTTATCTT+TGG - chr3_1:59210982-59211001 None:intergenic 30.0%
TCTTATGATCACTTAGTTTC+GGG - chr3_1:59211133-59211152 None:intergenic 30.0%
! AACCATTTCAAATTTTCCGT+CGG - chr3_1:59211261-59211280 None:intergenic 30.0%
TTCTTATCGAAAAAGTTTGG+TGG + chr3_1:59211303-59211322 Msa0365270:CDS 30.0%
ATTATGACACTTTGTAGATC+AGG + chr3_1:59211356-59211375 Msa0365270:CDS 30.0%
AAGAAAAGAAAACCATGTGT+CGG - chr3_1:59211414-59211433 None:intergenic 30.0%
! ACACATGGTTTTCTTTTCTT+GGG + chr3_1:59211414-59211433 Msa0365270:CDS 30.0%
TTGTTACAAGCAATAAGAAC+AGG + chr3_1:59211689-59211708 Msa0365270:CDS 30.0%
TGTCAAATTGAACTATCACT+TGG + chr3_1:59211860-59211879 Msa0365270:CDS 30.0%
!!! CTTGCTAGTTACTTTTTCAT+TGG - chr3_1:59211996-59212015 None:intergenic 30.0%
GACAATGAAACATAACAAAG+AGG + chr3_1:59212015-59212034 Msa0365270:CDS 30.0%
AGCACAAAATTTGATCCAAA+TGG - chr3_1:59212247-59212266 None:intergenic 30.0%
! ATTTGGATCAAATTTTGTGC+TGG + chr3_1:59212246-59212265 Msa0365270:CDS 30.0%
CTTGTAGGGTATATATCATT+TGG + chr3_1:59212547-59212566 Msa0365270:three_prime_UTR 30.0%
CATTGTGATGTGATTTCTTA+TGG + chr3_1:59212626-59212645 Msa0365270:three_prime_UTR 30.0%
TTCATTCCATCAGAATAATC+AGG - chr3_1:59212681-59212700 None:intergenic 30.0%
TAATGCAAGTGAGTGTGTTT+GGG - chr3_1:59206924-59206943 None:intergenic 35.0%
TTAATGCAAGTGAGTGTGTT+TGG - chr3_1:59206925-59206944 None:intergenic 35.0%
TGTAGTAAATGGAAGCTATC+TGG - chr3_1:59207481-59207500 None:intergenic 35.0%
GCTGCATTATCTGTAGTAAA+TGG - chr3_1:59207492-59207511 None:intergenic 35.0%
! TTGATGATCCTATAGTGAGT+AGG + chr3_1:59207584-59207603 Msa0365270:CDS 35.0%
TGATGATCCTATAGTGAGTA+GGG + chr3_1:59207585-59207604 Msa0365270:CDS 35.0%
TGAAAGAATCTAGAAGATGG+TGG - chr3_1:59207682-59207701 None:intergenic 35.0%
TTACATAAAAAAACCGGAGG+AGG - chr3_1:59207712-59207731 None:intergenic 35.0%
TATGTAATATTGAACCGGAC+CGG + chr3_1:59207725-59207744 Msa0365270:CDS 35.0%
GTTCGATGAGAATTCAAGAA+GGG + chr3_1:59207762-59207781 Msa0365270:CDS 35.0%
! AGGGTTGTTGATGTTTTATC+TGG + chr3_1:59207781-59207800 Msa0365270:CDS 35.0%
! GGGTTGTTGATGTTTTATCT+GGG + chr3_1:59207782-59207801 Msa0365270:CDS 35.0%
! ATGTTTTATCTGGGAAGAGT+GGG + chr3_1:59207791-59207810 Msa0365270:CDS 35.0%
TTAGCTCAAAGTGGAAAAGT+TGG + chr3_1:59207877-59207896 Msa0365270:CDS 35.0%
! TTTTTACCTACTGAGCTTGA+TGG + chr3_1:59207901-59207920 Msa0365270:CDS 35.0%
! TTTTACCTACTGAGCTTGAT+GGG + chr3_1:59207902-59207921 Msa0365270:CDS 35.0%
!!! ACTGGTGTTGTTCTAAGTTT+TGG + chr3_1:59208042-59208061 Msa0365270:CDS 35.0%
!!! CTGGTGTTGTTCTAAGTTTT+GGG + chr3_1:59208043-59208062 Msa0365270:CDS 35.0%
!!! TGGTGTTGTTCTAAGTTTTG+GGG + chr3_1:59208044-59208063 Msa0365270:CDS 35.0%
!! GTGTTGTGTTTGTTGTTTCA+AGG + chr3_1:59208118-59208137 Msa0365270:CDS 35.0%
TTCAAGGTTAACAAGGTTGT+TGG + chr3_1:59208134-59208153 Msa0365270:CDS 35.0%
AAGGACTATACTCTAAATCC+AGG + chr3_1:59208298-59208317 Msa0365270:CDS 35.0%
!! TTCTGTTTCCTTATTGGTTC+TGG + chr3_1:59208345-59208364 Msa0365270:intron 35.0%
AGTACAAACCAGAACCAATA+AGG - chr3_1:59208356-59208375 None:intergenic 35.0%
TGGTTATTGTGCATAGAGAA+AGG + chr3_1:59208746-59208765 Msa0365270:intron 35.0%
TATTGTGCATAGAGAAAGGA+AGG + chr3_1:59208750-59208769 Msa0365270:intron 35.0%
AGAACATTGCAGCAAAACAA+TGG - chr3_1:59208924-59208943 None:intergenic 35.0%
TGCTGCAATGTTCTATTATC+TGG + chr3_1:59208930-59208949 Msa0365270:intron 35.0%
GCTGCAATGTTCTATTATCT+GGG + chr3_1:59208931-59208950 Msa0365270:intron 35.0%
GCAGGTAGAAATAACACTAA+TGG - chr3_1:59209052-59209071 None:intergenic 35.0%
AGCATTTATCAAAAGACTGC+AGG - chr3_1:59209070-59209089 None:intergenic 35.0%
AACACCAAAAAAGAAGAGGT+GGG - chr3_1:59209115-59209134 None:intergenic 35.0%
TAACACCAAAAAAGAAGAGG+TGG - chr3_1:59209116-59209135 None:intergenic 35.0%
GCAATCAACTACTACACATT+TGG - chr3_1:59209269-59209288 None:intergenic 35.0%
TAGTTGATTGCGTGTAATCA+GGG + chr3_1:59209278-59209297 Msa0365270:intron 35.0%
!! ATTTCTGAAATCAGAAGGTG+TGG - chr3_1:59209572-59209591 None:intergenic 35.0%
!! CTTGTTGATGATGAAGAAGA+AGG - chr3_1:59209679-59209698 None:intergenic 35.0%
CATCATCAACAAGTTTACCT+TGG + chr3_1:59209686-59209705 Msa0365270:CDS 35.0%
GTTAATGTGGATTCAGATAG+AGG + chr3_1:59209718-59209737 Msa0365270:CDS 35.0%
TTCAGATAGAGGATTAGGTT+TGG + chr3_1:59209729-59209748 Msa0365270:CDS 35.0%
ATAATGCTTCTGGCCTAATA+TGG + chr3_1:59209906-59209925 Msa0365270:intron 35.0%
CATATCTTTGGTATAGGCAT+AGG - chr3_1:59210004-59210023 None:intergenic 35.0%
AGTAGGCATATCTTTGGTAT+AGG - chr3_1:59210010-59210029 None:intergenic 35.0%
TAGTTCAGTAGGCATATCTT+TGG - chr3_1:59210016-59210035 None:intergenic 35.0%
ATATGCCTACTGAACTAATC+TGG + chr3_1:59210019-59210038 Msa0365270:intron 35.0%
AAGCTATCTTGGAGAACTTA+TGG + chr3_1:59210248-59210267 Msa0365270:intron 35.0%
CTAGAAAGCAATTATGGAAG+TGG - chr3_1:59210330-59210349 None:intergenic 35.0%
CTTAAATATCTTGTGTAGGC+AGG - chr3_1:59210362-59210381 None:intergenic 35.0%
CTGCCTACACAAGATATTTA+AGG + chr3_1:59210360-59210379 Msa0365270:intron 35.0%
! AACAAATGGCTAAACGGATT+TGG - chr3_1:59210538-59210557 None:intergenic 35.0%
TTGGAACCCTGTTAATGTTT+GGG - chr3_1:59210799-59210818 None:intergenic 35.0%
TCTTTAGACATGTAGGGAAT+TGG - chr3_1:59210891-59210910 None:intergenic 35.0%
AACATCTGTTTGGATGGAAA+TGG - chr3_1:59210924-59210943 None:intergenic 35.0%
AATGGTAACATCTGTTTGGA+TGG - chr3_1:59210930-59210949 None:intergenic 35.0%
GCACTAAGAGTAGTATCAAA+AGG - chr3_1:59210960-59210979 None:intergenic 35.0%
! ACATAGATGACTTGTGGTTA+AGG - chr3_1:59211040-59211059 None:intergenic 35.0%
AAAACCAAATCTGTGGTGAT+GGG - chr3_1:59211071-59211090 None:intergenic 35.0%
!!! ATCACCACAGATTTGGTTTT+GGG + chr3_1:59211071-59211090 Msa0365270:CDS 35.0%
CTTATGATCACTTAGTTTCG+GGG - chr3_1:59211132-59211151 None:intergenic 35.0%
TTCCGACGGAAAATTTGAAA+TGG + chr3_1:59211256-59211275 Msa0365270:CDS 35.0%
! GACACATGGTTTTCTTTTCT+TGG + chr3_1:59211413-59211432 Msa0365270:CDS 35.0%
! TTTCTTTTTCCGACTCTATC+TGG - chr3_1:59211440-59211459 None:intergenic 35.0%
GTACTTGCAGAAACTCTATT+TGG + chr3_1:59211470-59211489 Msa0365270:CDS 35.0%
CAAACAATGCTTAATCTCAG+TGG + chr3_1:59211496-59211515 Msa0365270:CDS 35.0%
CATTCGAAAATCGAGTTCAA+TGG - chr3_1:59211548-59211567 None:intergenic 35.0%
GGTAAATTTCCATACTCACA+TGG + chr3_1:59211710-59211729 Msa0365270:CDS 35.0%
AATTTCCATACTCACATGGT+AGG + chr3_1:59211714-59211733 Msa0365270:CDS 35.0%
ATTTCCATACTCACATGGTA+GGG + chr3_1:59211715-59211734 Msa0365270:CDS 35.0%
!!! CGGCTTTTTTGATATGGAAA+AGG + chr3_1:59211793-59211812 Msa0365270:CDS 35.0%
! TTTGAATATGCCTCTAGAAG+AGG + chr3_1:59212057-59212076 Msa0365270:CDS 35.0%
GATTTCCTTGCACAAATTGA+TGG + chr3_1:59212142-59212161 Msa0365270:CDS 35.0%
! CTTTTCCATCAATTTGTGCA+AGG - chr3_1:59212150-59212169 None:intergenic 35.0%
TGCACAAATTGATGGAAAAG+TGG + chr3_1:59212150-59212169 Msa0365270:CDS 35.0%
ATCAGACAAGAAAAAAGCAG+TGG + chr3_1:59212315-59212334 Msa0365270:CDS 35.0%
AGAAAAAAGCAGTGGAAGAT+TGG + chr3_1:59212323-59212342 Msa0365270:CDS 35.0%
GATTGGATTGAACATGTTCT+CGG + chr3_1:59212340-59212359 Msa0365270:CDS 35.0%
TAGTTCACGTTAATTCTAGC+TGG - chr3_1:59212478-59212497 None:intergenic 35.0%
ATCAGAATAATCAGGAGAAC+TGG - chr3_1:59212673-59212692 None:intergenic 35.0%
AGTTCTCCTGATTATTCTGA+TGG + chr3_1:59212672-59212691 Msa0365270:three_prime_UTR 35.0%
GAAAGTGAGAAGGATGAAGA+TGG - chr3_1:59206873-59206892 None:intergenic 40.0%
AAGTGAGTGTGTTTGGGTAT+GGG - chr3_1:59206918-59206937 None:intergenic 40.0%
CTGCTTCGTCAGTTAAACAT+TGG - chr3_1:59207138-59207157 None:intergenic 40.0%
!! GTTTGCTTGAGAGCGTTTAA+TGG - chr3_1:59207446-59207465 None:intergenic 40.0%
AAAACGACGCAGTTTGATTC+TGG - chr3_1:59207528-59207547 None:intergenic 40.0%
GCAAAAACCCTACTCACTAT+AGG - chr3_1:59207595-59207614 None:intergenic 40.0%
! AAGAATCTAGAAGATGGTGG+TGG - chr3_1:59207679-59207698 None:intergenic 40.0%
CGGTGAAAGAATCTAGAAGA+TGG - chr3_1:59207685-59207704 None:intergenic 40.0%
GGTTCGATGAGAATTCAAGA+AGG + chr3_1:59207761-59207780 Msa0365270:CDS 40.0%
! GATGTTTTATCTGGGAAGAG+TGG + chr3_1:59207790-59207809 Msa0365270:CDS 40.0%
GCATAAACACCCATCAAAAG+AGG - chr3_1:59207829-59207848 None:intergenic 40.0%
TTTAACCCATCAAGCTCAGT+AGG - chr3_1:59207910-59207929 None:intergenic 40.0%
TGTTATTGGAAATGGGAGTG+AGG + chr3_1:59207963-59207982 Msa0365270:CDS 40.0%
GGGTTGAGATTTGATGAAGT+GGG + chr3_1:59207994-59208013 Msa0365270:CDS 40.0%
!!! TCTAAGTTTTGGGGAGATTG+AGG + chr3_1:59208053-59208072 Msa0365270:CDS 40.0%
AAGGTTAACAAGGTTGTTGG+AGG + chr3_1:59208137-59208156 Msa0365270:CDS 40.0%
ACAAGGTTGTTGGAGGTTTA+TGG + chr3_1:59208144-59208163 Msa0365270:CDS 40.0%
! AGGTTTATGGTGGGAAGATT+TGG + chr3_1:59208157-59208176 Msa0365270:CDS 40.0%
! TTATGGTGGGAAGATTTGGT+TGG + chr3_1:59208161-59208180 Msa0365270:CDS 40.0%
GAGTATAGTCCTTCCATAGA+AGG - chr3_1:59208291-59208310 None:intergenic 40.0%
!! TCACTCTAAAGCTGTTTGCT+TGG + chr3_1:59208726-59208745 Msa0365270:intron 40.0%
GGGTCATGATTCCATTCAAT+TGG + chr3_1:59208868-59208887 Msa0365270:intron 40.0%
AAAAAAGAAGAGGTGGGTCA+GGG - chr3_1:59209109-59209128 None:intergenic 40.0%
GTAGTTGATTGCGTGTAATC+AGG + chr3_1:59209277-59209296 Msa0365270:intron 40.0%
AGTTGATTGCGTGTAATCAG+GGG + chr3_1:59209279-59209298 Msa0365270:intron 40.0%
! ATGGGGTCTTTTGTTCCATT+TGG + chr3_1:59209535-59209554 Msa0365270:CDS 40.0%
GTGGATTCAGATAGAGGATT+AGG + chr3_1:59209724-59209743 Msa0365270:CDS 40.0%
TAGAGGATTAGGTTTGGCAA+AGG + chr3_1:59209735-59209754 Msa0365270:CDS 40.0%
GTAAGCTGCAATAATGCTTC+TGG + chr3_1:59209896-59209915 Msa0365270:intron 40.0%
! CATCACCAGATTAGTTCAGT+AGG - chr3_1:59210027-59210046 None:intergenic 40.0%
TTGTAGGACCAAAGTACACA+TGG - chr3_1:59210089-59210108 None:intergenic 40.0%
! GGCTAAACGGATTTGGATTT+CGG - chr3_1:59210531-59210550 None:intergenic 40.0%
CTTGGAACCCTGTTAATGTT+TGG - chr3_1:59210800-59210819 None:intergenic 40.0%
! AGGGAATTGGATTAGAACAG+TGG - chr3_1:59210878-59210897 None:intergenic 40.0%
! GATGACTTGTGGTTAAGGAA+AGG - chr3_1:59211035-59211054 None:intergenic 40.0%
TAAGGGACATAGATGACTTG+TGG - chr3_1:59211046-59211065 None:intergenic 40.0%
!! ATCTGTGGTGATGGGATTAA+GGG - chr3_1:59211063-59211082 None:intergenic 40.0%
!! AATCTGTGGTGATGGGATTA+AGG - chr3_1:59211064-59211083 None:intergenic 40.0%
TAATCCCATCACCACAGATT+TGG + chr3_1:59211064-59211083 Msa0365270:CDS 40.0%
CAAAACCAAATCTGTGGTGA+TGG - chr3_1:59211072-59211091 None:intergenic 40.0%
!! CATCACCACAGATTTGGTTT+TGG + chr3_1:59211070-59211089 Msa0365270:CDS 40.0%
TTTGGGAACGACATATACAC+CGG + chr3_1:59211088-59211107 Msa0365270:CDS 40.0%
AGGAAGAGGATCTAGCAATT+TGG - chr3_1:59211223-59211242 None:intergenic 40.0%
ATTATGACCTGAGTAGGAAG+AGG - chr3_1:59211237-59211256 None:intergenic 40.0%
TACTCAGGTCATAATTCCGA+CGG + chr3_1:59211242-59211261 Msa0365270:CDS 40.0%
! AAAAGTTTGGTGGCAAGATG+AGG + chr3_1:59211313-59211332 Msa0365270:CDS 40.0%
! CTCAGTGGATTTAAGCTCTA+AGG + chr3_1:59211511-59211530 Msa0365270:CDS 40.0%
! ACAGTCGTGGATTATATTGC+TGG + chr3_1:59211590-59211609 Msa0365270:CDS 40.0%
GTTGAGTAAAAAGCCACGTT+CGG + chr3_1:59211616-59211635 Msa0365270:CDS 40.0%
ATTTCCCTACCATGTGAGTA+TGG - chr3_1:59211722-59211741 None:intergenic 40.0%
ACCTCTTCTGTGTTCAAAGT+TGG + chr3_1:59211770-59211789 Msa0365270:CDS 40.0%
TCTTCTGTGTTCAAAGTTGG+CGG + chr3_1:59211773-59211792 Msa0365270:CDS 40.0%
!!! AGTTGGCGGCTTTTTTGATA+TGG + chr3_1:59211787-59211806 Msa0365270:CDS 40.0%
CTTTCCTCGGGAAATATCTT+TGG - chr3_1:59211821-59211840 None:intergenic 40.0%
AAGCAGTAGCAAAAACGTGA+GGG + chr3_1:59211907-59211926 Msa0365270:CDS 40.0%
GTGAGGGTTTCAAAGAGAAA+TGG + chr3_1:59211923-59211942 Msa0365270:CDS 40.0%
!! AACATAACAAAGAGGCGTCA+CGG + chr3_1:59212023-59212042 Msa0365270:CDS 40.0%
TGTGCTGGAAATTGATTACG+AGG + chr3_1:59212261-59212280 Msa0365270:CDS 40.0%
! TCACGTTAATTCTAGCTGGA+AGG - chr3_1:59212474-59212493 None:intergenic 40.0%
GAAGATGGTGAAGAGAAGGA+TGG - chr3_1:59206858-59206877 None:intergenic 45.0%
GGATGAAGATGGTGAAGAGA+AGG - chr3_1:59206862-59206881 None:intergenic 45.0%
GAGAGGAAGAGAAAGTGAGA+AGG - chr3_1:59206883-59206902 None:intergenic 45.0%
CAAGTGAGTGTGTTTGGGTA+TGG - chr3_1:59206919-59206938 None:intergenic 45.0%
AAAGTAAAGCGGAGATAGCG+TGG - chr3_1:59207225-59207244 None:intergenic 45.0%
!! TGGTTTTTGTTGTGGGGAGA+CGG - chr3_1:59207363-59207382 None:intergenic 45.0%
! AGTAGGGTTTTTGCAGAAGC+TGG + chr3_1:59207601-59207620 Msa0365270:CDS 45.0%
!! AATCTAGAAGATGGTGGTGG+TGG - chr3_1:59207676-59207695 None:intergenic 45.0%
AAAAAACCGGAGGAGGAGAA+CGG - chr3_1:59207705-59207724 None:intergenic 45.0%
AAATGGGAGTGAGGAGAAGA+TGG + chr3_1:59207972-59207991 Msa0365270:CDS 45.0%
AATGGGAGTGAGGAGAAGAT+GGG + chr3_1:59207973-59207992 Msa0365270:CDS 45.0%
GGGGTTGAGATTTGATGAAG+TGG + chr3_1:59207993-59208012 Msa0365270:CDS 45.0%
AGGTTGTTGGAGGTTTATGG+TGG + chr3_1:59208147-59208166 Msa0365270:CDS 45.0%
GGTTGTTGGAGGTTTATGGT+GGG + chr3_1:59208148-59208167 Msa0365270:CDS 45.0%
GACATCTGCTACTCCTTCTA+TGG + chr3_1:59208275-59208294 Msa0365270:CDS 45.0%
TCTGCTACTCCTTCTATGGA+AGG + chr3_1:59208279-59208298 Msa0365270:CDS 45.0%
AAAAAGAAGAGGTGGGTCAG+GGG - chr3_1:59209108-59209127 None:intergenic 45.0%
CAAAAAAGAAGAGGTGGGTC+AGG - chr3_1:59209110-59209129 None:intergenic 45.0%
!!! CTGACCCACCTCTTCTTTTT+TGG + chr3_1:59209108-59209127 Msa0365270:intron 45.0%
CACCTTAGCTTCTGACAGTT+TGG + chr3_1:59209463-59209482 Msa0365270:intron 45.0%
CACCAAACTGTCAGAAGCTA+AGG - chr3_1:59209468-59209487 None:intergenic 45.0%
! GGGTCTTTTGTTCCATTTGG+TGG + chr3_1:59209538-59209557 Msa0365270:CDS 45.0%
GTGGAAAAGAAGCCACCAAA+TGG - chr3_1:59209553-59209572 None:intergenic 45.0%
ATAATGCAATCAGTGGACCC+AGG + chr3_1:59210122-59210141 Msa0365270:intron 45.0%
CTAAGATCTTCGGATTGCAG+AGG + chr3_1:59210712-59210731 Msa0365270:CDS 45.0%
TCTTCGGATTGCAGAGGAAA+TGG + chr3_1:59210718-59210737 Msa0365270:CDS 45.0%
CGTTCCCAAAACCAAATCTG+TGG - chr3_1:59211078-59211097 None:intergenic 45.0%
! GTATCTGGCTCATGAGTAAC+CGG - chr3_1:59211110-59211129 None:intergenic 45.0%
! TCACTTAGTTTCGGGGTATC+TGG - chr3_1:59211125-59211144 None:intergenic 45.0%
! GAAGCATCTTCAGCACTTGT+CGG + chr3_1:59211151-59211170 Msa0365270:CDS 45.0%
GTCGGAATTATGACCTGAGT+AGG - chr3_1:59211243-59211262 None:intergenic 45.0%
ACACTTTGTAGATCAGGCGA+CGG + chr3_1:59211362-59211381 Msa0365270:CDS 45.0%
CAAATGTTAGAGCCGACACA+TGG + chr3_1:59211399-59211418 Msa0365270:CDS 45.0%
TTTCTTGGGCCAGATAGAGT+CGG + chr3_1:59211428-59211447 Msa0365270:CDS 45.0%
TCGAATGTCACGATGTGCTT+AGG + chr3_1:59211561-59211580 Msa0365270:CDS 45.0%
AATGTCACGATGTGCTTAGG+AGG + chr3_1:59211564-59211583 Msa0365270:CDS 45.0%
TCAAGAAACACAACCGAACG+TGG - chr3_1:59211632-59211651 None:intergenic 45.0%
GCCAACTTTGAACACAGAAG+AGG - chr3_1:59211774-59211793 None:intergenic 45.0%
GGAACCAAAGATATTTCCCG+AGG + chr3_1:59211814-59211833 Msa0365270:CDS 45.0%
ATCACTTGGACATGCTTCTG+AGG + chr3_1:59211874-59211893 Msa0365270:CDS 45.0%
GAAGCAGTAGCAAAAACGTG+AGG + chr3_1:59211906-59211925 Msa0365270:CDS 45.0%
! TATGCCTCTAGAAGAGGAAG+CGG + chr3_1:59212063-59212082 Msa0365270:CDS 45.0%
TTTGTGGAAGAGCAAGCTAC+AGG + chr3_1:59212442-59212461 Msa0365270:CDS 45.0%
CGTGGAGAGAGGTTGTTTGA+GGG - chr3_1:59207207-59207226 None:intergenic 50.0%
GGAGGGGAGAGAAAGTAAAG+CGG - chr3_1:59207236-59207255 None:intergenic 50.0%
AGTGGAGACGAGGAGAGTAA+GGG - chr3_1:59207303-59207322 None:intergenic 50.0%
AAGTGGAGACGAGGAGAGTA+AGG - chr3_1:59207304-59207323 None:intergenic 50.0%
GACTCCGACAGAGAGTTCTA+GGG - chr3_1:59207332-59207351 None:intergenic 50.0%
AGACTCCGACAGAGAGTTCT+AGG - chr3_1:59207333-59207352 None:intergenic 50.0%
TGAGAGAGTTTGACACCGGT+GGG - chr3_1:59207417-59207436 None:intergenic 50.0%
ATGAGAGAGTTTGACACCGG+TGG - chr3_1:59207418-59207437 None:intergenic 50.0%
! ACCGGTGTCAAACTCTCTCA+TGG + chr3_1:59207417-59207436 Msa0365270:CDS 50.0%
GCCATGAGAGAGTTTGACAC+CGG - chr3_1:59207421-59207440 None:intergenic 50.0%
AGCTATCTGGATGACGACGT+TGG - chr3_1:59207468-59207487 None:intergenic 50.0%
!! TGAACCGGACCGGTTTGAAA+CGG + chr3_1:59207735-59207754 Msa0365270:CDS 50.0%
CGAACCGAACCGTTTCAAAC+CGG - chr3_1:59207747-59207766 None:intergenic 50.0%
ATGGGAGTGAGGAGAAGATG+GGG + chr3_1:59207974-59207993 Msa0365270:CDS 50.0%
! TGGTGGGAAGATTTGGTTGG+TGG + chr3_1:59208164-59208183 Msa0365270:CDS 50.0%
! GGTGGGAAGATTTGGTTGGT+GGG + chr3_1:59208165-59208184 Msa0365270:CDS 50.0%
!! ATTTGGTTGGTGGGTGTAGC+AGG + chr3_1:59208174-59208193 Msa0365270:CDS 50.0%
GAAGGAGTAGCAGATGTCAC+AGG - chr3_1:59208273-59208292 None:intergenic 50.0%
CACTGCCTAGAGGTAAACCT+GGG - chr3_1:59210142-59210161 None:intergenic 50.0%
TTCCAAGCTCCATTCCACGA+GGG + chr3_1:59210813-59210832 Msa0365270:CDS 50.0%
AATCGAAACCCCTCGTGGAA+TGG - chr3_1:59210825-59210844 None:intergenic 50.0%
TTCCACGAGGGGTTTCGATT+CGG + chr3_1:59210825-59210844 Msa0365270:CDS 50.0%
GCTAGATCCTCTTCCTACTC+AGG + chr3_1:59211227-59211246 Msa0365270:CDS 50.0%
CAGAGATACTTGCAGCTGCT+TGG + chr3_1:59212290-59212309 Msa0365270:CDS 50.0%
! TCTCGGAAACAGCTTTGTCG+AGG + chr3_1:59212357-59212376 Msa0365270:CDS 50.0%
GGAGAGAGGTTGTTTGAGGG+TGG - chr3_1:59207204-59207223 None:intergenic 55.0%
GCGTGGAGAGAGGTTGTTTG+AGG - chr3_1:59207208-59207227 None:intergenic 55.0%
AGGAGAGTAAGGGAAGGTGG+TGG - chr3_1:59207293-59207312 None:intergenic 55.0%
ACGAGGAGAGTAAGGGAAGG+TGG - chr3_1:59207296-59207315 None:intergenic 55.0%
GAGACGAGGAGAGTAAGGGA+AGG - chr3_1:59207299-59207318 None:intergenic 55.0%
!! AGAGTTCTAGGGCACGGAAG+TGG - chr3_1:59207321-59207340 None:intergenic 55.0%
!! CGACAGAGAGTTCTAGGGCA+CGG - chr3_1:59207327-59207346 None:intergenic 55.0%
CGTGCCCTAGAACTCTCTGT+CGG + chr3_1:59207325-59207344 Msa0365270:CDS 55.0%
!! CGGCGGTGGTTTTTGTTGTG+GGG - chr3_1:59207369-59207388 None:intergenic 55.0%
!! GCGGCGGTGGTTTTTGTTGT+GGG - chr3_1:59207370-59207389 None:intergenic 55.0%
!! CTAGAAGATGGTGGTGGTGG+CGG - chr3_1:59207673-59207692 None:intergenic 55.0%
CTTTCACCGTTCTCCTCCTC+CGG + chr3_1:59207696-59207715 Msa0365270:CDS 55.0%
CGAACCGTTTCAAACCGGTC+CGG - chr3_1:59207742-59207761 None:intergenic 55.0%
!! CGGACCGGTTTGAAACGGTT+CGG + chr3_1:59207740-59207759 Msa0365270:CDS 55.0%
GTGGACCCAGGTTTACCTCT+AGG + chr3_1:59210134-59210153 Msa0365270:intron 55.0%
CCACTGCCTAGAGGTAAACC+TGG - chr3_1:59210143-59210162 None:intergenic 55.0%
CCAGGTTTACCTCTAGGCAG+TGG + chr3_1:59210140-59210159 Msa0365270:intron 55.0%
!! ATGGAAGTGCCACTGCCTAG+AGG - chr3_1:59210152-59210171 None:intergenic 55.0%
GTTCCAAGCTCCATTCCACG+AGG + chr3_1:59210812-59210831 Msa0365270:CDS 55.0%
TCCAAGCTCCATTCCACGAG+GGG + chr3_1:59210814-59210833 Msa0365270:CDS 55.0%
TACCGAATCGAAACCCCTCG+TGG - chr3_1:59210830-59210849 None:intergenic 55.0%
!! GAGGGGTTTCGATTCGGTAG+AGG + chr3_1:59210831-59210850 Msa0365270:CDS 55.0%
GCTTAGGAGGAAGACAGTCG+TGG + chr3_1:59211577-59211596 Msa0365270:CDS 55.0%
TCCTCCGCTTCCTCTTCTAG+AGG - chr3_1:59212070-59212089 None:intergenic 55.0%
CTAGAAGAGGAAGCGGAGGA+TGG + chr3_1:59212070-59212089 Msa0365270:CDS 55.0%
CATTGGCGCGCTGTGCTAAC+CGG - chr3_1:59207121-59207140 None:intergenic 60.0%
GTGGCTACGTCTACGCGCTA+CGG - chr3_1:59207185-59207204 None:intergenic 60.0%
AGCGGAGATAGCGTGGAGAG+AGG - chr3_1:59207218-59207237 None:intergenic 60.0%
!! CGGCGCGTAGAGTATTGGAG+GGG - chr3_1:59207252-59207271 None:intergenic 60.0%
!! GCGGCGCGTAGAGTATTGGA+GGG - chr3_1:59207253-59207272 None:intergenic 60.0%
TGTTGTGGGGAGACGGTCGA+GGG - chr3_1:59207356-59207375 None:intergenic 60.0%
TTGTTGTGGGGAGACGGTCG+AGG - chr3_1:59207357-59207376 None:intergenic 60.0%
! GGCGGCGGTGGTTTTTGTTG+TGG - chr3_1:59207371-59207390 None:intergenic 60.0%
ACCCCTCGTGGAATGGAGCT+TGG - chr3_1:59210818-59210837 None:intergenic 60.0%
!! AGAGGCGTCACGGTCGTATC+TGG + chr3_1:59212033-59212052 Msa0365270:CDS 60.0%
! GCCTCTAGAAGAGGAAGCGG+AGG + chr3_1:59212066-59212085 Msa0365270:CDS 60.0%
!! CTAACCGGCGTCGGCATCAC+CGG - chr3_1:59207106-59207125 None:intergenic 65.0%
!! GGCGGCGCGTAGAGTATTGG+AGG - chr3_1:59207254-59207273 None:intergenic 65.0%
GCAGGCGGCGCGTAGAGTAT+TGG - chr3_1:59207257-59207276 None:intergenic 65.0%
AGGGCACGGAAGTGGAGACG+AGG - chr3_1:59207313-59207332 None:intergenic 65.0%
!! GAAGATGGTGGTGGTGGCGG+CGG - chr3_1:59207670-59207689 None:intergenic 65.0%
! TCAGGCGACGGAAAGCGCAG+TGG + chr3_1:59211374-59211393 Msa0365270:CDS 65.0%
CTTGCCGGTGATGCCGACGC+CGG + chr3_1:59207099-59207118 Msa0365270:exon 70.0%
CGCGCTGTGCTAACCGGCGT+CGG - chr3_1:59207115-59207134 None:intergenic 70.0%
GGCGCGTGAGCATGAGCAGG+CGG - chr3_1:59207272-59207291 None:intergenic 70.0%
GGTGGCGCGTGAGCATGAGC+AGG - chr3_1:59207275-59207294 None:intergenic 70.0%
GTCATCGCCGGAGGAGACGG+CGG - chr3_1:59207389-59207408 None:intergenic 70.0%
GCCGTCTCCTCCGGCGATGA+CGG + chr3_1:59207388-59207407 Msa0365270:CDS 70.0%
GCCGTCATCGCCGGAGGAGA+CGG - chr3_1:59207392-59207411 None:intergenic 70.0%
! GTCTCCTCCGGCGATGACGG+CGG + chr3_1:59207391-59207410 Msa0365270:CDS 70.0%
ACCACCGCCGCCGTCTCCTC+CGG + chr3_1:59207379-59207398 Msa0365270:CDS 75.0%
ATCGCCGGAGGAGACGGCGG+CGG - chr3_1:59207386-59207405 None:intergenic 75.0%
!! GATGGTGGTGGTGGCGGCGG+TGG - chr3_1:59207667-59207686 None:intergenic 75.0%
! TGGGCCGCCGTCATCGCCGG+AGG - chr3_1:59207398-59207417 None:intergenic 80.0%
! CGGTGGGCCGCCGTCATCGC+CGG - chr3_1:59207401-59207420 None:intergenic 80.0%
!! CGGCGATGACGGCGGCCCAC+CGG + chr3_1:59207399-59207418 Msa0365270:CDS 80.0%
!!! GGTGGTGGTGGCGGCGGTGG+TGG - chr3_1:59207664-59207683 None:intergenic 80.0%
! GCCGGAGGAGACGGCGGCGG+TGG - chr3_1:59207383-59207402 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 59206848 59212783 59206848 ID=Msa0365270;Name=Msa0365270
chr3_1 mRNA 59206848 59212783 59206848 ID=Msa0365270-mRNA-1;Parent=Msa0365270;Name=Msa0365270-mRNA-1;_AED=0.02;_eAED=0.02;_QI=261|1|1|1|1|1|3|285|1083
chr3_1 exon 59206848 59208319 59206848 ID=Msa0365270-mRNA-1:exon:11302;Parent=Msa0365270-mRNA-1
chr3_1 exon 59209531 59209756 59209531 ID=Msa0365270-mRNA-1:exon:11303;Parent=Msa0365270-mRNA-1
chr3_1 exon 59210684 59212783 59210684 ID=Msa0365270-mRNA-1:exon:11304;Parent=Msa0365270-mRNA-1
chr3_1 five_prime_UTR 59206848 59207108 59206848 ID=Msa0365270-mRNA-1:five_prime_utr;Parent=Msa0365270-mRNA-1
chr3_1 CDS 59207109 59208319 59207109 ID=Msa0365270-mRNA-1:cds;Parent=Msa0365270-mRNA-1
chr3_1 CDS 59209531 59209756 59209531 ID=Msa0365270-mRNA-1:cds;Parent=Msa0365270-mRNA-1
chr3_1 CDS 59210684 59212498 59210684 ID=Msa0365270-mRNA-1:cds;Parent=Msa0365270-mRNA-1
chr3_1 three_prime_UTR 59212499 59212783 59212499 ID=Msa0365270-mRNA-1:three_prime_utr;Parent=Msa0365270-mRNA-1
Gene Sequence

>Msa0365270

ATGCCGACGCCGGTTAGCACAGCGCGCCAATGTTTAACTGACGAAGCAGCGCGTGCTCTCGACGAAGCAGTCTCCGTAGCGCGTAGACGTAGCCACCCTCAAACAACCTCTCTCCACGCTATCTCCGCTTTACTTTCTCTCCCCTCCAATACTCTACGCGCCGCCTGCTCATGCTCACGCGCCACCACCTTCCCTTACTCTCCTCGTCTCCACTTCCGTGCCCTAGAACTCTCTGTCGGAGTCTCCCTCGACCGTCTCCCCACAACAAAAACCACCGCCGCCGTCTCCTCCGGCGATGACGGCGGCCCACCGGTGTCAAACTCTCTCATGGCAGCCATTAAACGCTCTCAAGCAAACCAACGTCGTCATCCAGATAGCTTCCATTTACTACAGATAATGCAGCAACAGCAACAAAACCAGAATCAAACTGCGTCGTTTTTGAAAGTTGAGTTGAAGCATTTCATTCTCTCTATTCTTGATGATCCTATAGTGAGTAGGGTTTTTGCAGAAGCTGGTTTTCGTAGCTATGATGTTAAGTTTGCTTTACTTCAACCACCACCGCCGCCACCACCACCATCTTCTAGATTCTTTCACCGTTCTCCTCCTCCGGTTTTTTTATGTAATATTGAACCGGACCGGTTTGAAACGGTTCGGTTCGATGAGAATTCAAGAAGGGTTGTTGATGTTTTATCTGGGAAGAGTGGGAGTAAGAGAAATCCTCTTTTGATGGGTGTTTATGCAAAAACCGCTTTAAAAAGGTTTATAGAGTTAGCTCAAAGTGGAAAAGTTGGTTTTTTACCTACTGAGCTTGATGGGTTAAAAGTAGTTTCTATTGAGAATGAAATTTTTGAGTTTGTTATTGGAAATGGGAGTGAGGAGAAGATGGGGTTGAGATTTGATGAAGTGGGTCATTTAGTTGAACAAAGTTTATGTACTGGTGTTGTTCTAAGTTTTGGGGAGATTGAGGTTTTTGTGAAGAACAATAACGATGATGATGTTATTGATGATGGTGTTGTGTTTGTTGTTTCAAGGTTAACAAGGTTGTTGGAGGTTTATGGTGGGAAGATTTGGTTGGTGGGTGTAGCAGGAAATTGTGATGTTTATACTAAGTTTTTGAGGTTGTTCCCTAATGTTGAAAAAGATTTGGATTTGCATGTTTTACCTGTGACATCTGCTACTCCTTCTATGGAAGGACTATACTCTAAATCCAGCTTAATGGGGTCTTTTGTTCCATTTGGTGGCTTCTTTTCCACACCTTCTGATTTCAGAAATCCAAATCCATCATCTTTAACTCTTTGTGACACATGCAATAAAAAGTATGAACAAGAAGTTGCTGATAATTATGTGAATGTAGGACCTTCTTCTTCATCATCAACAAGTTTACCTTGGTTACAAAAGGTTAATGTGGATTCAGATAGAGGATTAGGTTTGGCAAAGACCAATGAAGATAACACAAGTTTGAATGCTAAGATCTTCGGATTGCAGAGGAAATGGAGTGATATCTGTCAACATCTTCATCAAAACAAACCATTACCTGAAATCAATATTTCCCAAACATTAACAGGGTTCCAAGCTCCATTCCACGAGGGGTTTCGATTCGGTAGAGGAACTAGCAGCCTTAATGAAATCCACTGTTCTAATCCAATTCCCTACATGTCTAAAGAGTTACAAACTCCATTTCCATCCAAACAGATGTTACCATTTTCACAACCTTTTGATACTACTCTTAGTGCCAAAGATAAAGCTGAACATGTACCGAAAGTTTCAAAATTCGATGTACAAAATCCTTTCCTTAACCACAAGTCATCTATGTCCCTTAATCCCATCACCACAGATTTGGTTTTGGGAACGACATATACACCGGTTACTCATGAGCCAGATACCCCGAAACTAAGTGATCATAAGAAGCATCTTCAGCACTTGTCGGATTCTCTTTCGACTGATTTTGATGCTATGAATGAGAGTACTTCAAACCAAATTGCTAGATCCTCTTCCTACTCAGGTCATAATTCCGACGGAAAATTTGAAATGGTTGATTTCAAGTCACTTTACAAACTTCTTATCGAAAAAGTTTGGTGGCAAGATGAGGCAATATATTCTATCATCAATATTATGACACTTTGTAGATCAGGCGACGGAAAGCGCAGTGGATCAAATGTTAGAGCCGACACATGGTTTTCTTTTCTTGGGCCAGATAGAGTCGGAAAAAGAAAAATTGCTTCAGTACTTGCAGAAACTCTATTTGGAAGCAAACAATGCTTAATCTCAGTGGATTTAAGCTCTAAGGACACGTTTCAACCATTGAACTCGATTTTCGAATGTCACGATGTGCTTAGGAGGAAGACAGTCGTGGATTATATTGCTGGCGAGTTGAGTAAAAAGCCACGTTCGGTTGTGTTTCTTGAAAATATCGATAAAGCTGATTTAATTGTGCAGAATAGTTTGTTACAAGCAATAAGAACAGGTAAATTTCCATACTCACATGGTAGGGAAATCAGCATCAACAATTCAATATTTGTTGTGACCTCTTCTGTGTTCAAAGTTGGCGGCTTTTTTGATATGGAAAAGGAACCAAAGATATTTCCCGAGGAAAGAATCCTTGAAGCTAAAAGATGTCAAATTGAACTATCACTTGGACATGCTTCTGAGGATGTCTTTAGAAGCAGTAGCAAAAACGTGAGGGTTTCAAAGAGAAATGGAGCATTTCTGAATAAAAGAAAGCTCTGTGAAACTGAAAGCAGTGATTCCAATGAAAAAGTAACTAGCAAGACAATGAAACATAACAAAGAGGCGTCACGGTCGTATCTGGATTTGAATATGCCTCTAGAAGAGGAAGCGGAGGATGGTGATTGTGAAAATGAATCTGTAGTTCAAAATCATGAAACATGGTTAAATGATTTCCTTGCACAAATTGATGGAAAAGTGGTTTTTAAGCCATTCAATTTTGATTTACTTGCTGAGCAAGTAATCGAACACATTGACAAACAATTTCAAACACCATTTGGATCAAATTTTGTGCTGGAAATTGATTACGAGGTCATGTCAGAGATACTTGCAGCTGCTTGGCTATCAGACAAGAAAAAAGCAGTGGAAGATTGGATTGAACATGTTCTCGGAAACAGCTTTGTCGAGGCACAAAAAAAGTATCGCAATGTAGCTGAATATGTAATGAAATTGGTTAAATGTGAAAGCATTTTTGTGGAAGAGCAAGCTACAGGAGTATGCCTTCCAGCTAGAATTAACGTGAACTAA
Protein sequence

>Msa0365270

MPTPVSTARQCLTDEAARALDEAVSVARRRSHPQTTSLHAISALLSLPSNTLRAACSCSRATTFPYSPRLHFRALELSVGVSLDRLPTTKTTAAVSSGDDGGPPVSNSLMAAIKRSQANQRRHPDSFHLLQIMQQQQQNQNQTASFLKVELKHFILSILDDPIVSRVFAEAGFRSYDVKFALLQPPPPPPPPSSRFFHRSPPPVFLCNIEPDRFETVRFDENSRRVVDVLSGKSGSKRNPLLMGVYAKTALKRFIELAQSGKVGFLPTELDGLKVVSIENEIFEFVIGNGSEEKMGLRFDEVGHLVEQSLCTGVVLSFGEIEVFVKNNNDDDVIDDGVVFVVSRLTRLLEVYGGKIWLVGVAGNCDVYTKFLRLFPNVEKDLDLHVLPVTSATPSMEGLYSKSSLMGSFVPFGGFFSTPSDFRNPNPSSLTLCDTCNKKYEQEVADNYVNVGPSSSSSTSLPWLQKVNVDSDRGLGLAKTNEDNTSLNAKIFGLQRKWSDICQHLHQNKPLPEINISQTLTGFQAPFHEGFRFGRGTSSLNEIHCSNPIPYMSKELQTPFPSKQMLPFSQPFDTTLSAKDKAEHVPKVSKFDVQNPFLNHKSSMSLNPITTDLVLGTTYTPVTHEPDTPKLSDHKKHLQHLSDSLSTDFDAMNESTSNQIARSSSYSGHNSDGKFEMVDFKSLYKLLIEKVWWQDEAIYSIINIMTLCRSGDGKRSGSNVRADTWFSFLGPDRVGKRKIASVLAETLFGSKQCLISVDLSSKDTFQPLNSIFECHDVLRRKTVVDYIAGELSKKPRSVVFLENIDKADLIVQNSLLQAIRTGKFPYSHGREISINNSIFVVTSSVFKVGGFFDMEKEPKIFPEERILEAKRCQIELSLGHASEDVFRSSSKNVRVSKRNGAFLNKRKLCETESSDSNEKVTSKTMKHNKEASRSYLDLNMPLEEEAEDGDCENESVVQNHETWLNDFLAQIDGKVVFKPFNFDLLAEQVIEHIDKQFQTPFGSNFVLEIDYEVMSEILAAAWLSDKKKAVEDWIEHVLGNSFVEAQKKYRNVAEYVMKLVKCESIFVEEQATGVCLPARINVN*