AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0457290

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0457290 MtrunA17_Chr3g0105051 96.211 1082 39 2 1 1082 1 1080 0.0 2149
Msa0457290 MtrunA17_Chr5g0430201 56.877 1127 404 28 1 1081 1 1091 0.0 1102
Msa0457290 MtrunA17_Chr3g0113631 38.204 1136 587 33 1 1079 1 1078 0.0 612
Msa0457290 MtrunA17_Chr4g0073021 28.486 1169 617 46 1 1081 1 1038 1.50e-107 360
Msa0457290 MtrunA17_Chr1g0197121 30.943 530 292 20 6 506 7 491 1.46e-41 165
Msa0457290 MtrunA17_Chr7g0235711 37.069 232 130 4 601 827 13 233 4.76e-36 137
Msa0457290 MtrunA17_Chr1g0177421 27.788 529 298 22 1 501 1 473 1.87e-29 126
Msa0457290 MtrunA17_Chr1g0177421 28.384 229 153 4 625 845 510 735 1.89e-11 68.6
Msa0457290 MtrunA17_Chr2g0298801 30.435 552 288 23 1 508 1 500 4.66e-29 125
Msa0457290 MtrunA17_Chr4g0071701 37.398 246 129 5 9 253 9 230 2.93e-25 113
Msa0457290 MtrunA17_Chr4g0071701 26.510 298 177 9 684 976 449 709 9.94e-11 66.2
Msa0457290 MtrunA17_Chr4g0061371 29.189 185 103 5 672 844 556 724 1.18e-11 69.3
Msa0457290 MtrunA17_Chr3g0137071 31.395 172 96 6 682 844 656 814 5.17e-11 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0457290 AT2G29970.1 42.248 1103 513 33 1 1081 1 1001 0.0 720
Msa0457290 AT1G07200.2 40.397 1109 501 29 1 1081 1 977 0.0 690
Msa0457290 AT2G40130.1 44.008 484 212 17 1 464 1 445 6.18e-102 342
Msa0457290 AT2G40130.1 33.085 402 221 11 679 1069 534 898 2.73e-46 181
Msa0457290 AT2G40130.2 44.008 484 212 17 1 464 1 445 7.42e-102 342
Msa0457290 AT2G40130.2 33.085 402 221 11 679 1069 537 901 3.19e-46 180
Msa0457290 AT5G57710.1 29.972 1081 574 41 1 1037 1 942 2.03e-95 326
Msa0457290 AT1G07200.1 34.809 497 239 11 591 1081 3 420 5.25e-68 235
Msa0457290 AT4G30350.1 29.362 596 316 22 1 540 1 547 2.54e-39 159
Msa0457290 AT4G30350.1 27.907 387 226 11 674 1058 565 900 1.83e-35 146
Msa0457290 AT3G52490.1 28.897 526 301 19 7 515 7 476 1.70e-38 155
Msa0457290 AT3G52490.1 26.471 204 141 3 652 846 544 747 8.13e-13 73.6
Msa0457290 AT4G29920.1 29.272 591 281 23 1 509 1 536 1.02e-32 138
Msa0457290 AT4G29920.2 28.956 594 282 23 1 509 1 539 9.49e-32 135
Msa0457290 AT5G57130.1 25.854 615 301 21 1 505 1 570 2.18e-25 114
Msa0457290 AT1G74310.2 28.108 185 105 5 672 844 553 721 4.08e-11 67.8
Msa0457290 AT1G74310.1 28.108 185 105 5 672 844 553 721 5.64e-11 67.4

Find 240 sgRNAs with CRISPR-Local

Find 416 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAAGGTTGTTGGAGGTTTA+TGG 0.130799 3_3:+51994260 Msa0457290:CDS
AATATTTCCCAAACATTAAC+AGG 0.207831 3_3:+51997103 Msa0457290:CDS
TTATTTAATTTGCAGCTTAA+TGG 0.221920 3_3:+51995629 Msa0457290:intron
GTTTGGGAAATATTGATTTC+AGG 0.232339 3_3:-51997094 None:intergenic
AATCTGTGGTGATGGGATTA+AGG 0.232976 3_3:-51997375 None:intergenic
GTACTTGCAGAAACTCTATT+TGG 0.237968 3_3:+51997784 Msa0457290:CDS
TATTTAATTTGCAGCTTAAT+GGG 0.240310 3_3:+51995630 Msa0457290:intron
ACTGGTGTTGTTCTAAGTTT+TGG 0.243911 3_3:+51994158 Msa0457290:CDS
TCTTATGATCACTTAGTTTC+GGG 0.247752 3_3:-51997444 None:intergenic
TTCTTATGATCACTTAGTTT+CGG 0.248562 3_3:-51997445 None:intergenic
GGAGACGGCGGCGGTGGTTT+TGG 0.263698 3_3:-51993493 None:intergenic
AAAACGACGCAGTTTGATTC+TGG 0.270613 3_3:-51993644 None:intergenic
AGACTCCGACAGAGAGTTCT+AGG 0.272563 3_3:-51993449 None:intergenic
AGAGGCGTCACGGTCGTATC+TGG 0.276445 3_3:+51998347 Msa0457290:CDS
TTTGAGTTTGTTATTGGAAA+TGG 0.276607 3_3:+51994071 Msa0457290:CDS
CATCACCACAGATTTGGTTT+TGG 0.281146 3_3:+51997384 Msa0457290:CDS
AGAGTTAAAGATGATGGATT+TGG 0.286880 3_3:-51995705 None:intergenic
CTTTCCTCGGGAAATATCTT+TGG 0.291800 3_3:-51998132 None:intergenic
CATTGTGATGTGATTTCTTA+TGG 0.302617 3_3:+51998940 Msa0457290:three_prime_UTR
CTTGGAACCCTGTTAATGTT+TGG 0.302700 3_3:-51997111 None:intergenic
GTATCAAAAGGTTGTGAAAA+TGG 0.303380 3_3:-51997259 None:intergenic
GATTTCCTTGCACAAATTGA+TGG 0.308028 3_3:+51998456 Msa0457290:CDS
CAAACTTGTGTTATCTTCAT+TGG 0.313695 3_3:-51996999 None:intergenic
GAGTATAGTCCTTCCATAGA+AGG 0.320882 3_3:-51994404 None:intergenic
GTGGATTCAGATAGAGGATT+AGG 0.326823 3_3:+51995837 Msa0457290:CDS
TAGAACAGTGGATTTCATTA+AGG 0.328940 3_3:-51997177 None:intergenic
TCTTTAGACATGTAGGGAAT+TGG 0.329298 3_3:-51997202 None:intergenic
CTCAGTGGATTTAAGCTCTA+AGG 0.329643 3_3:+51997825 Msa0457290:CDS
AGGTTTATGGTGGGAAGATT+TGG 0.330662 3_3:+51994273 Msa0457290:CDS
AGGAAGAGGATCTAGCAATT+TGG 0.330709 3_3:-51997534 None:intergenic
AAACAATTTCAAACACCATT+TGG 0.331958 3_3:+51998543 Msa0457290:CDS
GACATCTGCTACTCCTTCTA+TGG 0.334602 3_3:+51994391 Msa0457290:CDS
GATGGTGGTGGTGGCGGTGG+TGG 0.340560 3_3:-51993780 None:intergenic
TAATCCCATCACCACAGATT+TGG 0.341157 3_3:+51997378 Msa0457290:CDS
TGGTGGTGGGGAGACGGTCT+AGG 0.344456 3_3:-51993473 None:intergenic
TCACTTAGTTTCGGGGTATC+TGG 0.349818 3_3:-51997436 None:intergenic
TTCATTCCATCAGAATAATC+AGG 0.350311 3_3:-51998992 None:intergenic
TTGGAACCCTGTTAATGTTT+GGG 0.351629 3_3:-51997110 None:intergenic
AGCTGAATATGTAATGAAAT+TGG 0.356412 3_3:+51998716 Msa0457290:CDS
TACATGTTCAGCTTTATCTT+TGG 0.361577 3_3:-51997293 None:intergenic
ATTTGGTTGGTGGGTGTAGC+AGG 0.364020 3_3:+51994290 Msa0457290:CDS
TTGAGTTTGTTATTGGAAAT+GGG 0.369479 3_3:+51994072 Msa0457290:CDS
ATTTGTATAATGTAGCTTGT+AGG 0.370139 3_3:+51998846 Msa0457290:three_prime_UTR
ATTTCCCTACCATGTGAGTA+TGG 0.370800 3_3:-51998033 None:intergenic
GTTTGCTTGAGAGCGTTTAA+TGG 0.377128 3_3:-51993562 None:intergenic
TGTAGTAAATGGAAGCTATC+TGG 0.381763 3_3:-51993597 None:intergenic
ACGAGGGGAGTAAGGGAAGG+TGG 0.386814 3_3:-51993412 None:intergenic
CTTTCACCGTTCTCCTCCTC+CGG 0.389204 3_3:+51993812 Msa0457290:CDS
GTGTTGTGTTTGTTGTTTCA+AGG 0.391518 3_3:+51994234 Msa0457290:CDS
GCTGCATTATCTGTAGTAAA+TGG 0.394673 3_3:-51993608 None:intergenic
AAGTGGAGACGAGGGGAGTA+AGG 0.396612 3_3:-51993420 None:intergenic
ACATAGATGACTTGTGGTTA+AGG 0.398461 3_3:-51997351 None:intergenic
AGCTTCAAGGATTCTTTCCT+CGG 0.401396 3_3:-51998145 None:intergenic
ATCTGTGGTGATGGGATTAA+GGG 0.401702 3_3:-51997374 None:intergenic
TCTTCGGATTGCAGAGGAAA+TGG 0.405547 3_3:+51997032 Msa0457290:CDS
CTTGTAGGGTATATATCATT+TGG 0.406781 3_3:+51998861 Msa0457290:three_prime_UTR
AGTTTGAATGCTAAGATCTT+CGG 0.408390 3_3:+51997016 Msa0457290:CDS
CATTGGCGCGCTGTGCTAAC+CGG 0.409460 3_3:-51993237 None:intergenic
AAATGGGAGTGAGGAGAAGA+TGG 0.412598 3_3:+51994088 Msa0457290:CDS
TTCAAGGTTAACAAGGTTGT+TGG 0.414305 3_3:+51994250 Msa0457290:CDS
TTTGTATAATGTAGCTTGTA+GGG 0.419515 3_3:+51998847 Msa0457290:three_prime_UTR
GTTAATGTGGATTCAGATAG+AGG 0.421276 3_3:+51995831 Msa0457290:CDS
CGCGCTGTGCTAACCGGCGT+CGG 0.421555 3_3:-51993231 None:intergenic
AGCACAAAATTTGATCCAAA+TGG 0.422922 3_3:-51998558 None:intergenic
GCGTGGAGAGAGGTTGTTTG+AGG 0.426993 3_3:-51993324 None:intergenic
GGTGGGAAGATTTGGTTGGT+GGG 0.428555 3_3:+51994281 Msa0457290:CDS
TGAAAATGGTAACATCTGTT+TGG 0.429341 3_3:-51997245 None:intergenic
TTAATGCAAGTGAGTGTGTT+TGG 0.430699 3_3:-51993041 None:intergenic
ATTATGACACTTTGTAGATC+AGG 0.432244 3_3:+51997670 Msa0457290:CDS
TGGTGGGAAGATTTGGTTGG+TGG 0.435896 3_3:+51994280 Msa0457290:CDS
TTCCGACGGAAAATTTGAAA+TGG 0.437639 3_3:+51997570 Msa0457290:CDS
TCGAATGTCACGATGTGCTT+AGG 0.443577 3_3:+51997875 Msa0457290:CDS
TTCAGATAGAGGATTAGGTT+TGG 0.444163 3_3:+51995842 Msa0457290:CDS
TTCCACGAGGGGTTTCGATT+CGG 0.446189 3_3:+51997139 Msa0457290:CDS
CGTGGAGAGAGGTTGTTTGA+GGG 0.449121 3_3:-51993323 None:intergenic
TCCGGAGGAGACGGCGGCGG+TGG 0.457326 3_3:-51993499 None:intergenic
ATCAGAATAATCAGGAGAAC+TGG 0.457425 3_3:-51998984 None:intergenic
GTGAGGGTTTCAAAGAGAAA+TGG 0.459717 3_3:+51998237 Msa0457290:CDS
TTGTTACAAGCAATAAGAAC+AGG 0.461715 3_3:+51998003 Msa0457290:CDS
GAAGATGGTGGTGGTGGCGG+TGG 0.462009 3_3:-51993783 None:intergenic
GAAGCATCTTCAGCACTTGT+CGG 0.464177 3_3:+51997465 Msa0457290:CDS
TCTTCTGTGTTCAAAGTTGG+CGG 0.464178 3_3:+51998087 Msa0457290:CDS
AAGTTTACCTTGGTTACAAA+AGG 0.464777 3_3:+51995809 Msa0457290:CDS
TTAGCTCAAAGTGGAAAAGT+TGG 0.464881 3_3:+51993993 Msa0457290:CDS
GCATAAACACCCATCAAAAG+AGG 0.465899 3_3:-51993942 None:intergenic
GTTGAACAAAGTTTATGTAC+TGG 0.466401 3_3:+51994140 Msa0457290:CDS
CATTCGAAAATCGAGTTCAA+TGG 0.467152 3_3:-51997859 None:intergenic
TAATGCAAGTGAGTGTGTTT+GGG 0.468882 3_3:-51993040 None:intergenic
CAGAGATACTTGCAGCTGCT+TGG 0.469125 3_3:+51998604 Msa0457290:CDS
ACCACCGCCGCCGTCTCCTC+CGG 0.469398 3_3:+51993498 Msa0457290:CDS
CGGTGGGCCACCGTCATCTC+CGG 0.469966 3_3:-51993517 None:intergenic
ACCTCTTCTGTGTTCAAAGT+TGG 0.473166 3_3:+51998084 Msa0457290:CDS
CAAGTGAGTGTGTTTGGGTA+TGG 0.474544 3_3:-51993035 None:intergenic
TGATGATCCTATAGTGAGTA+GGG 0.474645 3_3:+51993704 Msa0457290:CDS
AGTTCTCCTGATTATTCTGA+TGG 0.476971 3_3:+51998986 Msa0457290:three_prime_UTR
TGCACAAATTGATGGAAAAG+TGG 0.479114 3_3:+51998464 Msa0457290:CDS
GTATCTGGCTCATGAGTAAC+CGG 0.479318 3_3:-51997421 None:intergenic
GCACTAAGAGTAGTATCAAA+AGG 0.479932 3_3:-51997271 None:intergenic
TTGTAACTCTTTAGACATGT+AGG 0.480247 3_3:-51997209 None:intergenic
AACATCTGTTTGGATGGAAA+TGG 0.480655 3_3:-51997235 None:intergenic
GAAATATTGATTTCAGGTAA+TGG 0.481282 3_3:-51997088 None:intergenic
CAAAACCAAATCTGTGGTGA+TGG 0.481333 3_3:-51997383 None:intergenic
GATTGGATTGAACATGTTCT+CGG 0.483455 3_3:+51998654 Msa0457290:CDS
ACCCCTCGTGGAATGGAGCT+TGG 0.485678 3_3:-51997129 None:intergenic
TCACAAAGAGTTAAAGATGA+TGG 0.485913 3_3:-51995711 None:intergenic
ACAGTCGTGGATTATATTGC+TGG 0.487204 3_3:+51997904 Msa0457290:CDS
AATGGGAGTGAGGAGAAGAT+GGG 0.488956 3_3:+51994089 Msa0457290:CDS
GAGGGGTTTCGATTCGGTAG+AGG 0.491158 3_3:+51997145 Msa0457290:CDS
AGAGTTCTAGGGCACGGAAG+TGG 0.493582 3_3:-51993437 None:intergenic
GGTGGTGGGGAGACGGTCTA+GGG 0.493860 3_3:-51993472 None:intergenic
TAGTTCACGTTAATTCTAGC+TGG 0.497870 3_3:-51998789 None:intergenic
TTTGTGGAAGAGCAAGCTAC+AGG 0.498965 3_3:+51998756 Msa0457290:CDS
TGAACCTGACCGGTTTGAAA+CGG 0.500761 3_3:+51993851 Msa0457290:CDS
CTAGAAGATGGTGGTGGTGG+CGG 0.500993 3_3:-51993786 None:intergenic
GTGGAAAAGAAGCCACCAAA+TGG 0.501664 3_3:-51995663 None:intergenic
AATCGAAACCCCTCGTGGAA+TGG 0.506142 3_3:-51997136 None:intergenic
CTAACCGGCGTCGGCATCAC+CGG 0.506372 3_3:-51993222 None:intergenic
GCAAGTAAATCAAAATTGAA+TGG 0.507263 3_3:-51998495 None:intergenic
CTGACCGGTTTGAAACGGTT+CGG 0.508642 3_3:+51993856 Msa0457290:CDS
AGTGGAGACGAGGGGAGTAA+GGG 0.509111 3_3:-51993419 None:intergenic
TGTAACTCTTTAGACATGTA+GGG 0.509316 3_3:-51997208 None:intergenic
GCCATGAGAGAGTTGGAAAC+CGG 0.510278 3_3:-51993537 None:intergenic
CTGCTTCGTCAGTTAAACAT+TGG 0.510619 3_3:-51993254 None:intergenic
GCAGGCGGCGCGTAGAGTAT+TGG 0.510804 3_3:-51993373 None:intergenic
CGAACCGAACCGTTTCAAAC+CGG 0.511187 3_3:-51993860 None:intergenic
CATCATCAACAAGTTTACCT+TGG 0.511750 3_3:+51995799 Msa0457290:CDS
TTGGTTACAAAAGGTTAATG+TGG 0.518434 3_3:+51995818 Msa0457290:CDS
AGGTTGTTGGAGGTTTATGG+TGG 0.519138 3_3:+51994263 Msa0457290:CDS
GAGACGAGGGGAGTAAGGGA+AGG 0.520254 3_3:-51993415 None:intergenic
ACCGTCATCTCCGGAGGAGA+CGG 0.520276 3_3:-51993508 None:intergenic
GAAAGTGAGAAGGATGAAGA+TGG 0.520598 3_3:-51992989 None:intergenic
AATGGTAACATCTGTTTGGA+TGG 0.522424 3_3:-51997241 None:intergenic
AAGGTTAACAAGGTTGTTGG+AGG 0.523476 3_3:+51994253 Msa0457290:CDS
TTTATATTCAAACGAAGTGA+AGG 0.525694 3_3:+51999041 Msa0457290:three_prime_UTR
GCCGTCTCCTCCGGAGATGA+CGG 0.528753 3_3:+51993507 Msa0457290:CDS
TTGATGATCCTATAGTGAGT+AGG 0.529193 3_3:+51993703 Msa0457290:CDS
TTTGGATTTCTGAAATCAGA+AGG 0.534039 3_3:-51995687 None:intergenic
GCTAGATCCTCTTCCTACTC+AGG 0.534790 3_3:+51997541 Msa0457290:CDS
ACCGGTTTCCAACTCTCTCA+TGG 0.535576 3_3:+51993536 Msa0457290:CDS
GAAGGAGTAGCAGATGTCAC+AGG 0.536186 3_3:-51994386 None:intergenic
AATTTCCATACTCACATGGT+AGG 0.537595 3_3:+51998028 Msa0457290:CDS
TTATGGTGGGAAGATTTGGT+TGG 0.537707 3_3:+51994277 Msa0457290:CDS
CTTGTTGATGATGAAGAAGA+AGG 0.537875 3_3:-51995789 None:intergenic
GCTTCAAGGATTCTTTCCTC+GGG 0.538993 3_3:-51998144 None:intergenic
AAGTGAGTGTGTTTGGGTAT+GGG 0.539932 3_3:-51993034 None:intergenic
TATGTAATATTGAACCTGAC+CGG 0.540615 3_3:+51993841 Msa0457290:CDS
TGTTATTGGAAATGGGAGTG+AGG 0.540969 3_3:+51994079 Msa0457290:CDS
AATGTCACGATGTGCTTAGG+AGG 0.549065 3_3:+51997878 Msa0457290:CDS
ATCTCCGGAGGAGACGGCGG+CGG 0.551091 3_3:-51993502 None:intergenic
AATCTAGAAGATGGTGGTGG+TGG 0.553740 3_3:-51993789 None:intergenic
CGGAGATGACGGTGGCCCAC+CGG 0.556211 3_3:+51993518 Msa0457290:CDS
AAAGTAAAGCGGAGATAGCG+TGG 0.556221 3_3:-51993341 None:intergenic
TTTAACCCATCAAGCTCAGT+AGG 0.556513 3_3:-51994023 None:intergenic
GGTGGCGCGTGAACATGAGC+AGG 0.559671 3_3:-51993391 None:intergenic
AAAACCAAATCTGTGGTGAT+GGG 0.562405 3_3:-51997382 None:intergenic
AATGGCTGCCATGAGAGAGT+TGG 0.562677 3_3:-51993544 None:intergenic
GAGAGGAAGAGAAAGTGAGA+AGG 0.563444 3_3:-51992999 None:intergenic
CTAGAAGAGGAAGCGGAGGA+TGG 0.565212 3_3:+51998384 Msa0457290:CDS
TTTATAGAGTTAGCTCAAAG+TGG 0.565828 3_3:+51993984 Msa0457290:CDS
ATGAGAGAGTTGGAAACCGG+TGG 0.567904 3_3:-51993534 None:intergenic
CGGTGAAAGAATCTAGAAGA+TGG 0.569218 3_3:-51993798 None:intergenic
ATTTCTGAAATCAGAAGGTG+TGG 0.569693 3_3:-51995682 None:intergenic
AAAAGTTTGGTGGCAAGATG+AGG 0.571818 3_3:+51997627 Msa0457290:CDS
GGCGGCGCGTAGAGTATTGG+AGG 0.572174 3_3:-51993370 None:intergenic
CGAACCGTTTCAAACCGGTC+AGG 0.572798 3_3:-51993855 None:intergenic
CTTATGATCACTTAGTTTCG+GGG 0.573967 3_3:-51997443 None:intergenic
ATTTCCATACTCACATGGTA+GGG 0.574024 3_3:+51998029 Msa0457290:CDS
GATGATGATGTTATTGATGA+TGG 0.574381 3_3:+51994212 Msa0457290:CDS
ATGGGAGTGAGGAGAAGATG+GGG 0.574724 3_3:+51994090 Msa0457290:CDS
GATGACTTGTGGTTAAGGAA+AGG 0.575003 3_3:-51997346 None:intergenic
TCACGTTAATTCTAGCTGGA+AGG 0.576437 3_3:-51998785 None:intergenic
GGAGGGGAGAGAAAGTAAAG+CGG 0.576511 3_3:-51993352 None:intergenic
GTGGCTACGTCTACGCGCTA+TGG 0.578389 3_3:-51993301 None:intergenic
ATTATGACCTGAGTAGGAAG+AGG 0.578817 3_3:-51997548 None:intergenic
GGCGCGTGAACATGAGCAGG+CGG 0.582018 3_3:-51993388 None:intergenic
TTTGAATATGCCTCTAGAAG+AGG 0.586648 3_3:+51998371 Msa0457290:CDS
TCCAAGCTCCATTCCACGAG+GGG 0.587037 3_3:+51997128 Msa0457290:CDS
TATGCCTCTAGAAGAGGAAG+CGG 0.589670 3_3:+51998377 Msa0457290:CDS
GCCTCTAGAAGAGGAAGCGG+AGG 0.590092 3_3:+51998380 Msa0457290:CDS
CTTGCCGGTGATGCCGACGC+CGG 0.590743 3_3:+51993218 Msa0457290:exon
ATCACTTGGACATGCTTCTG+AGG 0.590808 3_3:+51998188 Msa0457290:CDS
AGGGAATTGGATTAGAACAG+TGG 0.591231 3_3:-51997189 None:intergenic
ATTTAATTTGCAGCTTAATG+GGG 0.592243 3_3:+51995631 Msa0457290:intron
AGGGGAGTAAGGGAAGGTGG+TGG 0.593014 3_3:-51993409 None:intergenic
GACAATGAAACATAACAAAG+AGG 0.596834 3_3:+51998329 Msa0457290:CDS
GGGGTTGAGATTTGATGAAG+TGG 0.596851 3_3:+51994109 Msa0457290:CDS
GTTCGATGAGAATTCAAGAA+GGG 0.597462 3_3:+51993878 Msa0457290:CDS
GCTGATAATTATGTGAATGT+AGG 0.597746 3_3:+51995765 Msa0457290:CDS
GGAGAGAGGTTGTTTGAGGG+TGG 0.597815 3_3:-51993320 None:intergenic
GGTTGTTGGAGGTTTATGGT+GGG 0.597977 3_3:+51994264 Msa0457290:CDS
TGTCAAATTGAACTATCACT+TGG 0.598699 3_3:+51998174 Msa0457290:CDS
TTTCTTGGGCCAGATAGAGT+CGG 0.600021 3_3:+51997742 Msa0457290:CDS
AAGGACTATACTCTAAATCC+AGG 0.600682 3_3:+51994414 Msa0457290:CDS
TCAAGAAACACAACCGAACG+TGG 0.601412 3_3:-51997943 None:intergenic
AGGGCACGGAAGTGGAGACG+AGG 0.609012 3_3:-51993429 None:intergenic
TAAGGGACATAGATGACTTG+TGG 0.609164 3_3:-51997357 None:intergenic
GGGCACGGAAGTGGAGACGA+GGG 0.611222 3_3:-51993428 None:intergenic
TTGTTGTTTCAAGGTTAACA+AGG 0.611538 3_3:+51994243 Msa0457290:CDS
CAAATGTTAGAGCCGACACA+TGG 0.611870 3_3:+51997713 Msa0457290:CDS
TACCGAATCGAAACCCCTCG+TGG 0.612399 3_3:-51997141 None:intergenic
TAGAGGATTAGGTTTGGCAA+AGG 0.613261 3_3:+51995848 Msa0457290:CDS
TACTCAGGTCATAATTCCGA+CGG 0.614483 3_3:+51997556 Msa0457290:CDS
GCCAACTTTGAACACAGAAG+AGG 0.616374 3_3:-51998085 None:intergenic
CAAACAATGCTTAATCTCAG+TGG 0.616985 3_3:+51997810 Msa0457290:CDS
GTCATCTCCGGAGGAGACGG+CGG 0.619596 3_3:-51993505 None:intergenic
TGGGCCACCGTCATCTCCGG+AGG 0.622580 3_3:-51993514 None:intergenic
AGCTATCTGGATGACGACGT+TGG 0.622926 3_3:-51993584 None:intergenic
AGCGGAGATAGCGTGGAGAG+AGG 0.622984 3_3:-51993334 None:intergenic
TGAGAGAGTTGGAAACCGGT+GGG 0.623257 3_3:-51993533 None:intergenic
GGGTTGAGATTTGATGAAGT+GGG 0.623856 3_3:+51994110 Msa0457290:CDS
TCTGCTACTCCTTCTATGGA+AGG 0.627338 3_3:+51994395 Msa0457290:CDS
GGTTCGATGAGAATTCAAGA+AGG 0.628261 3_3:+51993877 Msa0457290:CDS
CGACAGAGAGTTCTAGGGCA+CGG 0.628714 3_3:-51993443 None:intergenic
TCCTCCGCTTCCTCTTCTAG+AGG 0.630711 3_3:-51998381 None:intergenic
CGTGCCCTAGAACTCTCTGT+CGG 0.630862 3_3:+51993444 Msa0457290:CDS
AACATAACAAAGAGGCGTCA+CGG 0.631267 3_3:+51998337 Msa0457290:CDS
AAGAAAAGAAAACCATGTGT+CGG 0.632597 3_3:-51997725 None:intergenic
CTAAGATCTTCGGATTGCAG+AGG 0.640028 3_3:+51997026 Msa0457290:CDS
TTTGGGAACGACATATACAC+CGG 0.641414 3_3:+51997402 Msa0457290:CDS
TGTGCTGGAAATTGATTACG+AGG 0.645493 3_3:+51998575 Msa0457290:CDS
CGTTCCCAAAACCAAATCTG+TGG 0.646306 3_3:-51997389 None:intergenic
TAGTTCAAAATCATGAAACA+TGG 0.647692 3_3:+51998427 Msa0457290:CDS
ATATAAAATATTCATAAGTG+AGG 0.648047 3_3:-51999025 None:intergenic
GCGGCGCGTAGAGTATTGGA+GGG 0.649141 3_3:-51993369 None:intergenic
GACTCCGACAGAGAGTTCTA+GGG 0.649350 3_3:-51993448 None:intergenic
GTCGGAATTATGACCTGAGT+AGG 0.651946 3_3:-51997554 None:intergenic
GGCACGGAAGTGGAGACGAG+GGG 0.652636 3_3:-51993427 None:intergenic
TTCCAAGCTCCATTCCACGA+GGG 0.653377 3_3:+51997127 Msa0457290:CDS
TCTCGGAAACAGCTTTGTCG+AGG 0.654210 3_3:+51998671 Msa0457290:CDS
ATATTTCCCAAACATTAACA+GGG 0.659404 3_3:+51997104 Msa0457290:CDS
ACACTTTGTAGATCAGGCGA+CGG 0.669934 3_3:+51997676 Msa0457290:CDS
GGAACCAAAGATATTTCCCG+AGG 0.675037 3_3:+51998128 Msa0457290:CDS
TCAGGCGACGGAAAGCGCAG+TGG 0.676230 3_3:+51997688 Msa0457290:CDS
GTCTCCTCCGGAGATGACGG+TGG 0.685017 3_3:+51993510 Msa0457290:CDS
TGAAAGAATCTAGAAGATGG+TGG 0.685445 3_3:-51993795 None:intergenic
GCTTAGGAGGAAGACAGTCG+TGG 0.692506 3_3:+51997891 Msa0457290:CDS
GGTAAATTTCCATACTCACA+TGG 0.692604 3_3:+51998024 Msa0457290:CDS
AAGAATCTAGAAGATGGTGG+TGG 0.695136 3_3:-51993792 None:intergenic
GTTCCAAGCTCCATTCCACG+AGG 0.732442 3_3:+51997126 Msa0457290:CDS
CGGCGCGTAGAGTATTGGAG+GGG 0.743314 3_3:-51993368 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATGATAAATAATTGAA+GGG - chr3_3:51993117-51993136 None:intergenic 10.0%
!! TAAAAATGATAAATAATTGA+AGG - chr3_3:51993118-51993137 None:intergenic 10.0%
!!! ATTTATTATTTGATTTTTGA+AGG - chr3_3:51993168-51993187 None:intergenic 10.0%
!!! ATATATGTTTTTACTTTTAT+TGG + chr3_3:51995519-51995538 Msa0457290:intron 10.0%
!!! TATATGTTTTTACTTTTATT+GGG + chr3_3:51995520-51995539 Msa0457290:intron 10.0%
!! ATTATAATATGAGTTAAAAA+AGG + chr3_3:51999067-51999086 Msa0457290:three_prime_UTR 10.0%
!!! AAGTTTTTTTTTTTTTAGTG+AGG - chr3_3:51993144-51993163 None:intergenic 15.0%
!! TCAATATTACATAAAAAAAC+CGG - chr3_3:51993834-51993853 None:intergenic 15.0%
!! ACTATGTAGTATATATTATA+TGG - chr3_3:51994580-51994599 None:intergenic 15.0%
!!! TTAAGAGCATAATTTAATAA+TGG + chr3_3:51994966-51994985 Msa0457290:intron 15.0%
!! AAAATACTGAATATGAAATT+TGG + chr3_3:51995332-51995351 Msa0457290:intron 15.0%
!! TATATATACTACATCATAAT+AGG - chr3_3:51995468-51995487 None:intergenic 15.0%
!!! TTTTTTACTTTTACCATATT+AGG - chr3_3:51996035-51996054 None:intergenic 15.0%
!!! ATACTAAATAGGAAATATTT+TGG - chr3_3:51996288-51996307 None:intergenic 15.0%
!! TATCATAAACAATACTAAAT+AGG - chr3_3:51996299-51996318 None:intergenic 15.0%
!!! TTGTTTATGATATATACTTT+TGG + chr3_3:51996307-51996326 Msa0457290:intron 15.0%
!! ATATAAAATATTCATAAGTG+AGG - chr3_3:51999028-51999047 None:intergenic 15.0%
!!! AATTTTATATATATGCTTGC+CGG + chr3_3:51993203-51993222 Msa0457290:five_prime_UTR 20.0%
!!! GAAATTTTTGAGTTTGTTAT+TGG + chr3_3:51994065-51994084 Msa0457290:CDS 20.0%
!!! ATGTTTATACTAAGTTTTTG+AGG + chr3_3:51994321-51994340 Msa0457290:CDS 20.0%
!! TATGACAAAAAAACAAACAT+AGG - chr3_3:51994503-51994522 None:intergenic 20.0%
!!! TATGTTTGTTTTTTTGTCAT+AGG + chr3_3:51994502-51994521 Msa0457290:intron 20.0%
!!! ATGTTTGTTTTTTTGTCATA+GGG + chr3_3:51994503-51994522 Msa0457290:intron 20.0%
!!! AAAGAAGTGTTATATGATAT+TGG + chr3_3:51994644-51994663 Msa0457290:intron 20.0%
!!! TGTGTAACATATAGTTTTTT+TGG + chr3_3:51994683-51994702 Msa0457290:intron 20.0%
!!! AATGTTCTAAATTATTCAGA+TGG + chr3_3:51994786-51994805 Msa0457290:intron 20.0%
!! TGCAAATTAAATAATGAACA+TGG - chr3_3:51995623-51995642 None:intergenic 20.0%
!!! TTATTTAATTTGCAGCTTAA+TGG + chr3_3:51995629-51995648 Msa0457290:intron 20.0%
!!! TATTTAATTTGCAGCTTAAT+GGG + chr3_3:51995630-51995649 Msa0457290:intron 20.0%
!! CAAAAATGAAACATAATGTT+AGG - chr3_3:51995893-51995912 None:intergenic 20.0%
!!! TCTGACTAAATTATTTTAGT+GGG - chr3_3:51995988-51996007 None:intergenic 20.0%
!! TATTTGCATTTGTATATTGT+AGG - chr3_3:51996214-51996233 None:intergenic 20.0%
!!! TTTTCCAATATTAATCTCAA+AGG - chr3_3:51996500-51996519 None:intergenic 20.0%
!! CACAAAAAGAAAAAAATCAT+GGG - chr3_3:51998915-51998934 None:intergenic 20.0%
!! ATAATATGAGTTAAAAAAGG+AGG + chr3_3:51999070-51999089 Msa0457290:three_prime_UTR 20.0%
!!! AATTGAAGGGTTTTTTGTTT+TGG - chr3_3:51993104-51993123 None:intergenic 25.0%
! ATATTACATAAAAAAACCGG+AGG - chr3_3:51993831-51993850 None:intergenic 25.0%
!!! CTCTATAAACCTTTTTAAAG+CGG - chr3_3:51993973-51993992 None:intergenic 25.0%
!!! TTTGAGTTTGTTATTGGAAA+TGG + chr3_3:51994071-51994090 Msa0457290:CDS 25.0%
!!! TTGAGTTTGTTATTGGAAAT+GGG + chr3_3:51994072-51994091 Msa0457290:CDS 25.0%
!!! CCAAATCTTTTTCAACATTA+GGG - chr3_3:51994352-51994371 None:intergenic 25.0%
!!! TCCAAATCTTTTTCAACATT+AGG - chr3_3:51994353-51994372 None:intergenic 25.0%
! AATAATGGTCATGATTCAAT+TGG + chr3_3:51994981-51995000 Msa0457290:intron 25.0%
!!! TTGTTAAAGTATTGCTCTAA+TGG + chr3_3:51995083-51995102 Msa0457290:intron 25.0%
! TCAAAGTATGCATTGAAATT+TGG - chr3_3:51995289-51995308 None:intergenic 25.0%
! AATAGGCTATAGAATTTGAT+AGG - chr3_3:51995451-51995470 None:intergenic 25.0%
! GATGTAGTATATATATTGCT+TGG + chr3_3:51995473-51995492 Msa0457290:intron 25.0%
!! GCTTGGAATATATTTACTTT+TGG + chr3_3:51995490-51995509 Msa0457290:intron 25.0%
!!! ATTTAATTTGCAGCTTAATG+GGG + chr3_3:51995631-51995650 Msa0457290:intron 25.0%
!!! CTCTGACTAAATTATTTTAG+TGG - chr3_3:51995989-51996008 None:intergenic 25.0%
! CACTAAAATAATTTAGTCAG+AGG + chr3_3:51995987-51996006 Msa0457290:intron 25.0%
! TTATATTTCCATGTGTACTT+TGG + chr3_3:51996187-51996206 Msa0457290:intron 25.0%
!!! TAGGAAATATTTTGGCTTTA+TGG - chr3_3:51996280-51996299 None:intergenic 25.0%
!!! ACTTCCTTTGAGATTAATAT+TGG + chr3_3:51996493-51996512 Msa0457290:intron 25.0%
! AAACAAAGAGAGAAAACAAA+TGG - chr3_3:51996866-51996885 None:intergenic 25.0%
!!! GAAATATTGATTTCAGGTAA+TGG - chr3_3:51997091-51997110 None:intergenic 25.0%
! AATATTTCCCAAACATTAAC+AGG + chr3_3:51997103-51997122 Msa0457290:CDS 25.0%
! ATATTTCCCAAACATTAACA+GGG + chr3_3:51997104-51997123 Msa0457290:CDS 25.0%
!!! ACATCGAATTTTGAAACTTT+CGG - chr3_3:51997319-51997338 None:intergenic 25.0%
! TTCTTATGATCACTTAGTTT+CGG - chr3_3:51997448-51997467 None:intergenic 25.0%
! AACTTCTTATCGAAAAAGTT+TGG + chr3_3:51997614-51997633 Msa0457290:CDS 25.0%
! TAGTTCAAAATCATGAAACA+TGG + chr3_3:51998427-51998446 Msa0457290:CDS 25.0%
! GCAAGTAAATCAAAATTGAA+TGG - chr3_3:51998498-51998517 None:intergenic 25.0%
! AAACAATTTCAAACACCATT+TGG + chr3_3:51998543-51998562 Msa0457290:CDS 25.0%
! AGCTGAATATGTAATGAAAT+TGG + chr3_3:51998716-51998735 Msa0457290:CDS 25.0%
!!! TAAATGTGAAAGCATTTTTG+TGG + chr3_3:51998740-51998759 Msa0457290:CDS 25.0%
!! ATTTGTATAATGTAGCTTGT+AGG + chr3_3:51998846-51998865 Msa0457290:three_prime_UTR 25.0%
!! TTTGTATAATGTAGCTTGTA+GGG + chr3_3:51998847-51998866 Msa0457290:three_prime_UTR 25.0%
!!! TTGGTAGTTATAGCATTTTA+AGG + chr3_3:51998880-51998899 Msa0457290:three_prime_UTR 25.0%
! CCACAAAAAGAAAAAAATCA+TGG - chr3_3:51998916-51998935 None:intergenic 25.0%
!!! CCATGATTTTTTTCTTTTTG+TGG + chr3_3:51998913-51998932 Msa0457290:three_prime_UTR 25.0%
! TTTATATTCAAACGAAGTGA+AGG + chr3_3:51999041-51999060 Msa0457290:three_prime_UTR 25.0%
ATGGGAAAAAATTTAGTGAG+AGG - chr3_3:51993019-51993038 None:intergenic 30.0%
TATGTAATATTGAACCTGAC+CGG + chr3_3:51993841-51993860 Msa0457290:CDS 30.0%
! TAAGAGAAATCCTCTTTTGA+TGG + chr3_3:51993932-51993951 Msa0457290:CDS 30.0%
! AAGAGAAATCCTCTTTTGAT+GGG + chr3_3:51993933-51993952 Msa0457290:CDS 30.0%
!! ATGCAAAAACCGCTTTAAAA+AGG + chr3_3:51993961-51993980 Msa0457290:CDS 30.0%
TTTATAGAGTTAGCTCAAAG+TGG + chr3_3:51993984-51994003 Msa0457290:CDS 30.0%
GTTGAACAAAGTTTATGTAC+TGG + chr3_3:51994140-51994159 Msa0457290:CDS 30.0%
! GATGATGATGTTATTGATGA+TGG + chr3_3:51994212-51994231 Msa0457290:CDS 30.0%
!! TTGTTGTTTCAAGGTTAACA+AGG + chr3_3:51994243-51994262 Msa0457290:CDS 30.0%
CCCTAATGTTGAAAAAGATT+TGG + chr3_3:51994349-51994368 Msa0457290:CDS 30.0%
AGAAAAAAGAGAAACATACC+TGG - chr3_3:51994435-51994454 None:intergenic 30.0%
! TTCCTTTTCTGTTTCCTTAT+TGG + chr3_3:51994455-51994474 Msa0457290:intron 30.0%
AACCAATAAGGAAACAGAAA+AGG - chr3_3:51994460-51994479 None:intergenic 30.0%
TGACATGTCAATATGATCAT+TGG + chr3_3:51994718-51994737 Msa0457290:intron 30.0%
!!! CTTGTCTTTAACTTGTTTTG+TGG + chr3_3:51994758-51994777 Msa0457290:intron 30.0%
!!! TATTCAGATGGTTTTGTCTT+TGG + chr3_3:51994798-51994817 Msa0457290:intron 30.0%
TTAGAGTGATAAAGAAGAGT+TGG - chr3_3:51994831-51994850 None:intergenic 30.0%
TTGAATTATAATCTGACTCC+TGG + chr3_3:51994912-51994931 Msa0457290:intron 30.0%
TCATAACACCAAAAAAGAAG+AGG - chr3_3:51995232-51995251 None:intergenic 30.0%
!!! GTTATGAATGTAGTTTTGTG+CGG + chr3_3:51995245-51995264 Msa0457290:intron 30.0%
ATTTGGATTGTGATCTTGAT+CGG - chr3_3:51995272-51995291 None:intergenic 30.0%
GATAGGTCAACATTGAATAT+AGG - chr3_3:51995434-51995453 None:intergenic 30.0%
!! TTTGGATTTCTGAAATCAGA+AGG - chr3_3:51995690-51995709 None:intergenic 30.0%
!! AGAGTTAAAGATGATGGATT+TGG - chr3_3:51995708-51995727 None:intergenic 30.0%
TCACAAAGAGTTAAAGATGA+TGG - chr3_3:51995714-51995733 None:intergenic 30.0%
GCTGATAATTATGTGAATGT+AGG + chr3_3:51995765-51995784 Msa0457290:CDS 30.0%
AAGTTTACCTTGGTTACAAA+AGG + chr3_3:51995809-51995828 Msa0457290:CDS 30.0%
! ACATTAACCTTTTGTAACCA+AGG - chr3_3:51995819-51995838 None:intergenic 30.0%
TTGGTTACAAAAGGTTAATG+TGG + chr3_3:51995818-51995837 Msa0457290:CDS 30.0%
!! TGCTACTTTCATTCTTACTA+AGG - chr3_3:51996068-51996087 None:intergenic 30.0%
! GATGTTTCTGAAAGTTGATT+AGG + chr3_3:51996152-51996171 Msa0457290:intron 30.0%
AATGCAAATAATGCAATCAG+TGG + chr3_3:51996224-51996243 Msa0457290:intron 30.0%
!! GCTATTTTCATAAGCTATCT+TGG + chr3_3:51996346-51996365 Msa0457290:intron 30.0%
TGACAACTAGAAAGCAATTA+TGG - chr3_3:51996445-51996464 None:intergenic 30.0%
TTAAAATATCTTGTGTAGGC+AGG - chr3_3:51996471-51996490 None:intergenic 30.0%
! TGCCTACACAAGATATTTTA+AGG + chr3_3:51996470-51996489 Msa0457290:intron 30.0%
GTCCTTAAAATATCTTGTGT+AGG - chr3_3:51996475-51996494 None:intergenic 30.0%
TACTTTCTCTTGTCAAAAGT+TGG + chr3_3:51996632-51996651 Msa0457290:intron 30.0%
ACTTTCTCTTGTCAAAAGTT+GGG + chr3_3:51996633-51996652 Msa0457290:intron 30.0%
TAGATCCAATTTACCAAAGT+CGG - chr3_3:51996743-51996762 None:intergenic 30.0%
GATGACTTTCTGATTATGAT+CGG - chr3_3:51996792-51996811 None:intergenic 30.0%
AGAGAAAACAAATGGCTAAA+CGG - chr3_3:51996858-51996877 None:intergenic 30.0%
CAAACTGAAACAATGAAGTA+TGG - chr3_3:51996936-51996955 None:intergenic 30.0%
TACTTCATTGTTTCAGTTTG+TGG + chr3_3:51996936-51996955 Msa0457290:intron 30.0%
CAAACTTGTGTTATCTTCAT+TGG - chr3_3:51997002-51997021 None:intergenic 30.0%
AGTTTGAATGCTAAGATCTT+CGG + chr3_3:51997016-51997035 Msa0457290:CDS 30.0%
!! GTTTGGGAAATATTGATTTC+AGG - chr3_3:51997097-51997116 None:intergenic 30.0%
! TAGAACAGTGGATTTCATTA+AGG - chr3_3:51997180-51997199 None:intergenic 30.0%
TGTAACTCTTTAGACATGTA+GGG - chr3_3:51997211-51997230 None:intergenic 30.0%
TTGTAACTCTTTAGACATGT+AGG - chr3_3:51997212-51997231 None:intergenic 30.0%
TGAAAATGGTAACATCTGTT+TGG - chr3_3:51997248-51997267 None:intergenic 30.0%
GTATCAAAAGGTTGTGAAAA+TGG - chr3_3:51997262-51997281 None:intergenic 30.0%
! TACATGTTCAGCTTTATCTT+TGG - chr3_3:51997296-51997315 None:intergenic 30.0%
TCTTATGATCACTTAGTTTC+GGG - chr3_3:51997447-51997466 None:intergenic 30.0%
! AACCATTTCAAATTTTCCGT+CGG - chr3_3:51997575-51997594 None:intergenic 30.0%
TTCTTATCGAAAAAGTTTGG+TGG + chr3_3:51997617-51997636 Msa0457290:CDS 30.0%
ATTATGACACTTTGTAGATC+AGG + chr3_3:51997670-51997689 Msa0457290:CDS 30.0%
AAGAAAAGAAAACCATGTGT+CGG - chr3_3:51997728-51997747 None:intergenic 30.0%
! ACACATGGTTTTCTTTTCTT+GGG + chr3_3:51997728-51997747 Msa0457290:CDS 30.0%
TTGTTACAAGCAATAAGAAC+AGG + chr3_3:51998003-51998022 Msa0457290:CDS 30.0%
!!! TTTGACATCTTTTAGCTTCA+AGG - chr3_3:51998161-51998180 None:intergenic 30.0%
TGTCAAATTGAACTATCACT+TGG + chr3_3:51998174-51998193 Msa0457290:CDS 30.0%
!!! CTTGCTAGTTACTTTTTCAT+TGG - chr3_3:51998310-51998329 None:intergenic 30.0%
GACAATGAAACATAACAAAG+AGG + chr3_3:51998329-51998348 Msa0457290:CDS 30.0%
AGCACAAAATTTGATCCAAA+TGG - chr3_3:51998561-51998580 None:intergenic 30.0%
! ATTTGGATCAAATTTTGTGC+TGG + chr3_3:51998560-51998579 Msa0457290:CDS 30.0%
CTTGTAGGGTATATATCATT+TGG + chr3_3:51998861-51998880 Msa0457290:three_prime_UTR 30.0%
CATTGTGATGTGATTTCTTA+TGG + chr3_3:51998940-51998959 Msa0457290:three_prime_UTR 30.0%
TTCATTCCATCAGAATAATC+AGG - chr3_3:51998995-51999014 None:intergenic 30.0%
TAATGCAAGTGAGTGTGTTT+GGG - chr3_3:51993043-51993062 None:intergenic 35.0%
TTAATGCAAGTGAGTGTGTT+TGG - chr3_3:51993044-51993063 None:intergenic 35.0%
TGTAGTAAATGGAAGCTATC+TGG - chr3_3:51993600-51993619 None:intergenic 35.0%
GCTGCATTATCTGTAGTAAA+TGG - chr3_3:51993611-51993630 None:intergenic 35.0%
! TTGATGATCCTATAGTGAGT+AGG + chr3_3:51993703-51993722 Msa0457290:CDS 35.0%
TGATGATCCTATAGTGAGTA+GGG + chr3_3:51993704-51993723 Msa0457290:CDS 35.0%
TGAAAGAATCTAGAAGATGG+TGG - chr3_3:51993798-51993817 None:intergenic 35.0%
TTACATAAAAAAACCGGAGG+AGG - chr3_3:51993828-51993847 None:intergenic 35.0%
GTTCGATGAGAATTCAAGAA+GGG + chr3_3:51993878-51993897 Msa0457290:CDS 35.0%
! AGGGTTGTTGATGTTTTATC+TGG + chr3_3:51993897-51993916 Msa0457290:CDS 35.0%
! GGGTTGTTGATGTTTTATCT+GGG + chr3_3:51993898-51993917 Msa0457290:CDS 35.0%
! ATGTTTTATCTGGGAAGAGT+GGG + chr3_3:51993907-51993926 Msa0457290:CDS 35.0%
TTAGCTCAAAGTGGAAAAGT+TGG + chr3_3:51993993-51994012 Msa0457290:CDS 35.0%
! TTTTTACCTACTGAGCTTGA+TGG + chr3_3:51994017-51994036 Msa0457290:CDS 35.0%
! TTTTACCTACTGAGCTTGAT+GGG + chr3_3:51994018-51994037 Msa0457290:CDS 35.0%
!!! ACTGGTGTTGTTCTAAGTTT+TGG + chr3_3:51994158-51994177 Msa0457290:CDS 35.0%
!!! CTGGTGTTGTTCTAAGTTTT+GGG + chr3_3:51994159-51994178 Msa0457290:CDS 35.0%
!!! TGGTGTTGTTCTAAGTTTTG+GGG + chr3_3:51994160-51994179 Msa0457290:CDS 35.0%
!! GTGTTGTGTTTGTTGTTTCA+AGG + chr3_3:51994234-51994253 Msa0457290:CDS 35.0%
TTCAAGGTTAACAAGGTTGT+TGG + chr3_3:51994250-51994269 Msa0457290:CDS 35.0%
AAGGACTATACTCTAAATCC+AGG + chr3_3:51994414-51994433 Msa0457290:CDS 35.0%
!! TTCTGTTTCCTTATTGGTTC+TGG + chr3_3:51994461-51994480 Msa0457290:intron 35.0%
AGTACAAACCAGAACCAATA+AGG - chr3_3:51994472-51994491 None:intergenic 35.0%
TGGTTATTGTGCATAGAGAA+AGG + chr3_3:51994862-51994881 Msa0457290:intron 35.0%
TATTGTGCATAGAGAAAGGA+AGG + chr3_3:51994866-51994885 Msa0457290:intron 35.0%
AAAAGCTTACAGAAAGTTCC+AGG - chr3_3:51994933-51994952 None:intergenic 35.0%
!! GGTCATGATTCAATTGGTTT+TGG + chr3_3:51994987-51995006 Msa0457290:intron 35.0%
AGAACATTGCAGCAAAACAA+TGG - chr3_3:51995037-51995056 None:intergenic 35.0%
TGCTGCAATGTTCTATTATC+TGG + chr3_3:51995043-51995062 Msa0457290:intron 35.0%
GCTGCAATGTTCTATTATCT+GGG + chr3_3:51995044-51995063 Msa0457290:intron 35.0%
GCAGGTAGAAATAACACTAA+TGG - chr3_3:51995165-51995184 None:intergenic 35.0%
AGCATTTATCAAAAGACTGC+AGG - chr3_3:51995183-51995202 None:intergenic 35.0%
AACACCAAAAAAGAAGAGGT+GGG - chr3_3:51995228-51995247 None:intergenic 35.0%
TAACACCAAAAAAGAAGAGG+TGG - chr3_3:51995229-51995248 None:intergenic 35.0%
GCAATCAACTACTACACATT+TGG - chr3_3:51995382-51995401 None:intergenic 35.0%
TAGTTGATTGCGTGTAATCA+GGG + chr3_3:51995391-51995410 Msa0457290:intron 35.0%
!! ATTTCTGAAATCAGAAGGTG+TGG - chr3_3:51995685-51995704 None:intergenic 35.0%
!! CTTGTTGATGATGAAGAAGA+AGG - chr3_3:51995792-51995811 None:intergenic 35.0%
CATCATCAACAAGTTTACCT+TGG + chr3_3:51995799-51995818 Msa0457290:CDS 35.0%
GTTAATGTGGATTCAGATAG+AGG + chr3_3:51995831-51995850 Msa0457290:CDS 35.0%
TTCAGATAGAGGATTAGGTT+TGG + chr3_3:51995842-51995861 Msa0457290:CDS 35.0%
ATAATGCTTCTGGCCTAATA+TGG + chr3_3:51996019-51996038 Msa0457290:intron 35.0%
CATATCTTTGGTATAGGCAT+AGG - chr3_3:51996113-51996132 None:intergenic 35.0%
AGTAGGCATATCTTTGGTAT+AGG - chr3_3:51996119-51996138 None:intergenic 35.0%
TAGTTCAGTAGGCATATCTT+TGG - chr3_3:51996125-51996144 None:intergenic 35.0%
ATATGCCTACTGAACTAATC+TGG + chr3_3:51996128-51996147 Msa0457290:intron 35.0%
AAGCTATCTTGGAGAACTTA+TGG + chr3_3:51996357-51996376 Msa0457290:intron 35.0%
CTAGAAAGCAATTATGGAAG+TGG - chr3_3:51996439-51996458 None:intergenic 35.0%
TTTGACGTAGTCATGTGATT+TGG + chr3_3:51996688-51996707 Msa0457290:intron 35.0%
! AACAAATGGCTAAACGGATT+TGG - chr3_3:51996852-51996871 None:intergenic 35.0%
TTGGAACCCTGTTAATGTTT+GGG - chr3_3:51997113-51997132 None:intergenic 35.0%
TCTTTAGACATGTAGGGAAT+TGG - chr3_3:51997205-51997224 None:intergenic 35.0%
AACATCTGTTTGGATGGAAA+TGG - chr3_3:51997238-51997257 None:intergenic 35.0%
AATGGTAACATCTGTTTGGA+TGG - chr3_3:51997244-51997263 None:intergenic 35.0%
GCACTAAGAGTAGTATCAAA+AGG - chr3_3:51997274-51997293 None:intergenic 35.0%
! ACATAGATGACTTGTGGTTA+AGG - chr3_3:51997354-51997373 None:intergenic 35.0%
AAAACCAAATCTGTGGTGAT+GGG - chr3_3:51997385-51997404 None:intergenic 35.0%
!!! ATCACCACAGATTTGGTTTT+GGG + chr3_3:51997385-51997404 Msa0457290:CDS 35.0%
CTTATGATCACTTAGTTTCG+GGG - chr3_3:51997446-51997465 None:intergenic 35.0%
TTCCGACGGAAAATTTGAAA+TGG + chr3_3:51997570-51997589 Msa0457290:CDS 35.0%
! GACACATGGTTTTCTTTTCT+TGG + chr3_3:51997727-51997746 Msa0457290:CDS 35.0%
! TTTCTTTTTCCGACTCTATC+TGG - chr3_3:51997754-51997773 None:intergenic 35.0%
GTACTTGCAGAAACTCTATT+TGG + chr3_3:51997784-51997803 Msa0457290:CDS 35.0%
CAAACAATGCTTAATCTCAG+TGG + chr3_3:51997810-51997829 Msa0457290:CDS 35.0%
CATTCGAAAATCGAGTTCAA+TGG - chr3_3:51997862-51997881 None:intergenic 35.0%
GGTAAATTTCCATACTCACA+TGG + chr3_3:51998024-51998043 Msa0457290:CDS 35.0%
AATTTCCATACTCACATGGT+AGG + chr3_3:51998028-51998047 Msa0457290:CDS 35.0%
ATTTCCATACTCACATGGTA+GGG + chr3_3:51998029-51998048 Msa0457290:CDS 35.0%
!!! CGGCTTTTTTGATATGGAAA+AGG + chr3_3:51998107-51998126 Msa0457290:CDS 35.0%
! TTTGAATATGCCTCTAGAAG+AGG + chr3_3:51998371-51998390 Msa0457290:CDS 35.0%
GATTTCCTTGCACAAATTGA+TGG + chr3_3:51998456-51998475 Msa0457290:CDS 35.0%
! CTTTTCCATCAATTTGTGCA+AGG - chr3_3:51998464-51998483 None:intergenic 35.0%
TGCACAAATTGATGGAAAAG+TGG + chr3_3:51998464-51998483 Msa0457290:CDS 35.0%
ATCAGACAAGAAAAAAGCAG+TGG + chr3_3:51998629-51998648 Msa0457290:CDS 35.0%
AGAAAAAAGCAGTGGAAGAT+TGG + chr3_3:51998637-51998656 Msa0457290:CDS 35.0%
GATTGGATTGAACATGTTCT+CGG + chr3_3:51998654-51998673 Msa0457290:CDS 35.0%
TAGTTCACGTTAATTCTAGC+TGG - chr3_3:51998792-51998811 None:intergenic 35.0%
ATCAGAATAATCAGGAGAAC+TGG - chr3_3:51998987-51999006 None:intergenic 35.0%
AGTTCTCCTGATTATTCTGA+TGG + chr3_3:51998986-51999005 Msa0457290:three_prime_UTR 35.0%
GAAAGTGAGAAGGATGAAGA+TGG - chr3_3:51992992-51993011 None:intergenic 40.0%
AAGTGAGTGTGTTTGGGTAT+GGG - chr3_3:51993037-51993056 None:intergenic 40.0%
CTGCTTCGTCAGTTAAACAT+TGG - chr3_3:51993257-51993276 None:intergenic 40.0%
!! GTTTGCTTGAGAGCGTTTAA+TGG - chr3_3:51993565-51993584 None:intergenic 40.0%
AAAACGACGCAGTTTGATTC+TGG - chr3_3:51993647-51993666 None:intergenic 40.0%
GCAAAAACCCTACTCACTAT+AGG - chr3_3:51993714-51993733 None:intergenic 40.0%
! AAGAATCTAGAAGATGGTGG+TGG - chr3_3:51993795-51993814 None:intergenic 40.0%
CGGTGAAAGAATCTAGAAGA+TGG - chr3_3:51993801-51993820 None:intergenic 40.0%
GGTTCGATGAGAATTCAAGA+AGG + chr3_3:51993877-51993896 Msa0457290:CDS 40.0%
! GATGTTTTATCTGGGAAGAG+TGG + chr3_3:51993906-51993925 Msa0457290:CDS 40.0%
GCATAAACACCCATCAAAAG+AGG - chr3_3:51993945-51993964 None:intergenic 40.0%
TTTAACCCATCAAGCTCAGT+AGG - chr3_3:51994026-51994045 None:intergenic 40.0%
TGTTATTGGAAATGGGAGTG+AGG + chr3_3:51994079-51994098 Msa0457290:CDS 40.0%
GGGTTGAGATTTGATGAAGT+GGG + chr3_3:51994110-51994129 Msa0457290:CDS 40.0%
!!! TCTAAGTTTTGGGGAGATTG+AGG + chr3_3:51994169-51994188 Msa0457290:CDS 40.0%
AAGGTTAACAAGGTTGTTGG+AGG + chr3_3:51994253-51994272 Msa0457290:CDS 40.0%
ACAAGGTTGTTGGAGGTTTA+TGG + chr3_3:51994260-51994279 Msa0457290:CDS 40.0%
! AGGTTTATGGTGGGAAGATT+TGG + chr3_3:51994273-51994292 Msa0457290:CDS 40.0%
! TTATGGTGGGAAGATTTGGT+TGG + chr3_3:51994277-51994296 Msa0457290:CDS 40.0%
GAGTATAGTCCTTCCATAGA+AGG - chr3_3:51994407-51994426 None:intergenic 40.0%
!! TCACTCTAAAGCTGTTTGCT+TGG + chr3_3:51994842-51994861 Msa0457290:intron 40.0%
AAAAAAGAAGAGGTGGGTCA+GGG - chr3_3:51995222-51995241 None:intergenic 40.0%
GTAGTTGATTGCGTGTAATC+AGG + chr3_3:51995390-51995409 Msa0457290:intron 40.0%
AGTTGATTGCGTGTAATCAG+GGG + chr3_3:51995392-51995411 Msa0457290:intron 40.0%
! ATGGGGTCTTTTGTTCCATT+TGG + chr3_3:51995648-51995667 Msa0457290:CDS 40.0%
GTGGATTCAGATAGAGGATT+AGG + chr3_3:51995837-51995856 Msa0457290:CDS 40.0%
TAGAGGATTAGGTTTGGCAA+AGG + chr3_3:51995848-51995867 Msa0457290:CDS 40.0%
GTAAGCTGCAATAATGCTTC+TGG + chr3_3:51996009-51996028 Msa0457290:intron 40.0%
! CATCACCAGATTAGTTCAGT+AGG - chr3_3:51996136-51996155 None:intergenic 40.0%
TTGTAGGACCAAAGTACACA+TGG - chr3_3:51996198-51996217 None:intergenic 40.0%
TCTTGTCAAAAGTTGGGATC+TGG + chr3_3:51996639-51996658 Msa0457290:intron 40.0%
GTGTTCCGACTTTGGTAAAT+TGG + chr3_3:51996735-51996754 Msa0457290:intron 40.0%
AATCAGAAAGTCATCCAGAC+TGG + chr3_3:51996797-51996816 Msa0457290:intron 40.0%
! GGCTAAACGGATTTGGATTT+CGG - chr3_3:51996845-51996864 None:intergenic 40.0%
CTTGGAACCCTGTTAATGTT+TGG - chr3_3:51997114-51997133 None:intergenic 40.0%
! AGGGAATTGGATTAGAACAG+TGG - chr3_3:51997192-51997211 None:intergenic 40.0%
! GATGACTTGTGGTTAAGGAA+AGG - chr3_3:51997349-51997368 None:intergenic 40.0%
TAAGGGACATAGATGACTTG+TGG - chr3_3:51997360-51997379 None:intergenic 40.0%
!! ATCTGTGGTGATGGGATTAA+GGG - chr3_3:51997377-51997396 None:intergenic 40.0%
!! AATCTGTGGTGATGGGATTA+AGG - chr3_3:51997378-51997397 None:intergenic 40.0%
TAATCCCATCACCACAGATT+TGG + chr3_3:51997378-51997397 Msa0457290:CDS 40.0%
CAAAACCAAATCTGTGGTGA+TGG - chr3_3:51997386-51997405 None:intergenic 40.0%
!! CATCACCACAGATTTGGTTT+TGG + chr3_3:51997384-51997403 Msa0457290:CDS 40.0%
TTTGGGAACGACATATACAC+CGG + chr3_3:51997402-51997421 Msa0457290:CDS 40.0%
AGGAAGAGGATCTAGCAATT+TGG - chr3_3:51997537-51997556 None:intergenic 40.0%
ATTATGACCTGAGTAGGAAG+AGG - chr3_3:51997551-51997570 None:intergenic 40.0%
TACTCAGGTCATAATTCCGA+CGG + chr3_3:51997556-51997575 Msa0457290:CDS 40.0%
! AAAAGTTTGGTGGCAAGATG+AGG + chr3_3:51997627-51997646 Msa0457290:CDS 40.0%
! CTCAGTGGATTTAAGCTCTA+AGG + chr3_3:51997825-51997844 Msa0457290:CDS 40.0%
! ACAGTCGTGGATTATATTGC+TGG + chr3_3:51997904-51997923 Msa0457290:CDS 40.0%
GTTGAGTAAAAAGCCACGTT+CGG + chr3_3:51997930-51997949 Msa0457290:CDS 40.0%
ATTTCCCTACCATGTGAGTA+TGG - chr3_3:51998036-51998055 None:intergenic 40.0%
ACCTCTTCTGTGTTCAAAGT+TGG + chr3_3:51998084-51998103 Msa0457290:CDS 40.0%
TCTTCTGTGTTCAAAGTTGG+CGG + chr3_3:51998087-51998106 Msa0457290:CDS 40.0%
!!! AGTTGGCGGCTTTTTTGATA+TGG + chr3_3:51998101-51998120 Msa0457290:CDS 40.0%
CTTTCCTCGGGAAATATCTT+TGG - chr3_3:51998135-51998154 None:intergenic 40.0%
AGCTTCAAGGATTCTTTCCT+CGG - chr3_3:51998148-51998167 None:intergenic 40.0%
AAGCAGTAGCAAAAACGTGA+GGG + chr3_3:51998221-51998240 Msa0457290:CDS 40.0%
GTGAGGGTTTCAAAGAGAAA+TGG + chr3_3:51998237-51998256 Msa0457290:CDS 40.0%
!! AACATAACAAAGAGGCGTCA+CGG + chr3_3:51998337-51998356 Msa0457290:CDS 40.0%
TGTGCTGGAAATTGATTACG+AGG + chr3_3:51998575-51998594 Msa0457290:CDS 40.0%
! TCACGTTAATTCTAGCTGGA+AGG - chr3_3:51998788-51998807 None:intergenic 40.0%
GAGAGGAAGAGAAAGTGAGA+AGG - chr3_3:51993002-51993021 None:intergenic 45.0%
CAAGTGAGTGTGTTTGGGTA+TGG - chr3_3:51993038-51993057 None:intergenic 45.0%
AAAGTAAAGCGGAGATAGCG+TGG - chr3_3:51993344-51993363 None:intergenic 45.0%
! AGTAGGGTTTTTGCAGAAGC+TGG + chr3_3:51993720-51993739 Msa0457290:CDS 45.0%
!! AATCTAGAAGATGGTGGTGG+TGG - chr3_3:51993792-51993811 None:intergenic 45.0%
AAAAAACCGGAGGAGGAGAA+CGG - chr3_3:51993821-51993840 None:intergenic 45.0%
!! TGAACCTGACCGGTTTGAAA+CGG + chr3_3:51993851-51993870 Msa0457290:CDS 45.0%
AAATGGGAGTGAGGAGAAGA+TGG + chr3_3:51994088-51994107 Msa0457290:CDS 45.0%
AATGGGAGTGAGGAGAAGAT+GGG + chr3_3:51994089-51994108 Msa0457290:CDS 45.0%
GGGGTTGAGATTTGATGAAG+TGG + chr3_3:51994109-51994128 Msa0457290:CDS 45.0%
AGGTTGTTGGAGGTTTATGG+TGG + chr3_3:51994263-51994282 Msa0457290:CDS 45.0%
GGTTGTTGGAGGTTTATGGT+GGG + chr3_3:51994264-51994283 Msa0457290:CDS 45.0%
GACATCTGCTACTCCTTCTA+TGG + chr3_3:51994391-51994410 Msa0457290:CDS 45.0%
TCTGCTACTCCTTCTATGGA+AGG + chr3_3:51994395-51994414 Msa0457290:CDS 45.0%
AAAAAGAAGAGGTGGGTCAG+GGG - chr3_3:51995221-51995240 None:intergenic 45.0%
CAAAAAAGAAGAGGTGGGTC+AGG - chr3_3:51995223-51995242 None:intergenic 45.0%
!!! CTGACCCACCTCTTCTTTTT+TGG + chr3_3:51995221-51995240 Msa0457290:intron 45.0%
CACCTTAGCTTCTGACAGTT+TGG + chr3_3:51995576-51995595 Msa0457290:intron 45.0%
CACCAAACTGTCAGAAGCTA+AGG - chr3_3:51995581-51995600 None:intergenic 45.0%
! GGGTCTTTTGTTCCATTTGG+TGG + chr3_3:51995651-51995670 Msa0457290:CDS 45.0%
GTGGAAAAGAAGCCACCAAA+TGG - chr3_3:51995666-51995685 None:intergenic 45.0%
ATAATGCAATCAGTGGACCC+AGG + chr3_3:51996231-51996250 Msa0457290:intron 45.0%
! AGTCATGTGATTTGGACCGT+TGG + chr3_3:51996696-51996715 Msa0457290:intron 45.0%
TTGGACCGTTGGATGAAGAT+CGG + chr3_3:51996707-51996726 Msa0457290:intron 45.0%
AGTGTCCGATCTTCATCCAA+CGG - chr3_3:51996715-51996734 None:intergenic 45.0%
CAATCAAGCATTCACCAGTC+TGG - chr3_3:51996814-51996833 None:intergenic 45.0%
CTAAGATCTTCGGATTGCAG+AGG + chr3_3:51997026-51997045 Msa0457290:CDS 45.0%
TCTTCGGATTGCAGAGGAAA+TGG + chr3_3:51997032-51997051 Msa0457290:CDS 45.0%
CGTTCCCAAAACCAAATCTG+TGG - chr3_3:51997392-51997411 None:intergenic 45.0%
! GTATCTGGCTCATGAGTAAC+CGG - chr3_3:51997424-51997443 None:intergenic 45.0%
! TCACTTAGTTTCGGGGTATC+TGG - chr3_3:51997439-51997458 None:intergenic 45.0%
! GAAGCATCTTCAGCACTTGT+CGG + chr3_3:51997465-51997484 Msa0457290:CDS 45.0%
GTCGGAATTATGACCTGAGT+AGG - chr3_3:51997557-51997576 None:intergenic 45.0%
ACACTTTGTAGATCAGGCGA+CGG + chr3_3:51997676-51997695 Msa0457290:CDS 45.0%
CAAATGTTAGAGCCGACACA+TGG + chr3_3:51997713-51997732 Msa0457290:CDS 45.0%
TTTCTTGGGCCAGATAGAGT+CGG + chr3_3:51997742-51997761 Msa0457290:CDS 45.0%
TCGAATGTCACGATGTGCTT+AGG + chr3_3:51997875-51997894 Msa0457290:CDS 45.0%
AATGTCACGATGTGCTTAGG+AGG + chr3_3:51997878-51997897 Msa0457290:CDS 45.0%
TCAAGAAACACAACCGAACG+TGG - chr3_3:51997946-51997965 None:intergenic 45.0%
GCCAACTTTGAACACAGAAG+AGG - chr3_3:51998088-51998107 None:intergenic 45.0%
GGAACCAAAGATATTTCCCG+AGG + chr3_3:51998128-51998147 Msa0457290:CDS 45.0%
GCTTCAAGGATTCTTTCCTC+GGG - chr3_3:51998147-51998166 None:intergenic 45.0%
ATCACTTGGACATGCTTCTG+AGG + chr3_3:51998188-51998207 Msa0457290:CDS 45.0%
GAAGCAGTAGCAAAAACGTG+AGG + chr3_3:51998220-51998239 Msa0457290:CDS 45.0%
! TATGCCTCTAGAAGAGGAAG+CGG + chr3_3:51998377-51998396 Msa0457290:CDS 45.0%
TTTGTGGAAGAGCAAGCTAC+AGG + chr3_3:51998756-51998775 Msa0457290:CDS 45.0%
CGTGGAGAGAGGTTGTTTGA+GGG - chr3_3:51993326-51993345 None:intergenic 50.0%
GGAGGGGAGAGAAAGTAAAG+CGG - chr3_3:51993355-51993374 None:intergenic 50.0%
GACTCCGACAGAGAGTTCTA+GGG - chr3_3:51993451-51993470 None:intergenic 50.0%
AGACTCCGACAGAGAGTTCT+AGG - chr3_3:51993452-51993471 None:intergenic 50.0%
TGAGAGAGTTGGAAACCGGT+GGG - chr3_3:51993536-51993555 None:intergenic 50.0%
ATGAGAGAGTTGGAAACCGG+TGG - chr3_3:51993537-51993556 None:intergenic 50.0%
! ACCGGTTTCCAACTCTCTCA+TGG + chr3_3:51993536-51993555 Msa0457290:CDS 50.0%
GCCATGAGAGAGTTGGAAAC+CGG - chr3_3:51993540-51993559 None:intergenic 50.0%
AATGGCTGCCATGAGAGAGT+TGG - chr3_3:51993547-51993566 None:intergenic 50.0%
AGCTATCTGGATGACGACGT+TGG - chr3_3:51993587-51993606 None:intergenic 50.0%
!! CTGACCGGTTTGAAACGGTT+CGG + chr3_3:51993856-51993875 Msa0457290:CDS 50.0%
CGAACCGAACCGTTTCAAAC+CGG - chr3_3:51993863-51993882 None:intergenic 50.0%
ATGGGAGTGAGGAGAAGATG+GGG + chr3_3:51994090-51994109 Msa0457290:CDS 50.0%
! TGGTGGGAAGATTTGGTTGG+TGG + chr3_3:51994280-51994299 Msa0457290:CDS 50.0%
! GGTGGGAAGATTTGGTTGGT+GGG + chr3_3:51994281-51994300 Msa0457290:CDS 50.0%
!! ATTTGGTTGGTGGGTGTAGC+AGG + chr3_3:51994290-51994309 Msa0457290:CDS 50.0%
GAAGGAGTAGCAGATGTCAC+AGG - chr3_3:51994389-51994408 None:intergenic 50.0%
CACTGCCTAGAGGTAAACCT+GGG - chr3_3:51996251-51996270 None:intergenic 50.0%
TTCCAAGCTCCATTCCACGA+GGG + chr3_3:51997127-51997146 Msa0457290:CDS 50.0%
AATCGAAACCCCTCGTGGAA+TGG - chr3_3:51997139-51997158 None:intergenic 50.0%
TTCCACGAGGGGTTTCGATT+CGG + chr3_3:51997139-51997158 Msa0457290:CDS 50.0%
GCTAGATCCTCTTCCTACTC+AGG + chr3_3:51997541-51997560 Msa0457290:CDS 50.0%
CAGAGATACTTGCAGCTGCT+TGG + chr3_3:51998604-51998623 Msa0457290:CDS 50.0%
! TCTCGGAAACAGCTTTGTCG+AGG + chr3_3:51998671-51998690 Msa0457290:CDS 50.0%
GGAGAGAGGTTGTTTGAGGG+TGG - chr3_3:51993323-51993342 None:intergenic 55.0%
GCGTGGAGAGAGGTTGTTTG+AGG - chr3_3:51993327-51993346 None:intergenic 55.0%
AGTGGAGACGAGGGGAGTAA+GGG - chr3_3:51993422-51993441 None:intergenic 55.0%
AAGTGGAGACGAGGGGAGTA+AGG - chr3_3:51993423-51993442 None:intergenic 55.0%
!! AGAGTTCTAGGGCACGGAAG+TGG - chr3_3:51993440-51993459 None:intergenic 55.0%
!! CGACAGAGAGTTCTAGGGCA+CGG - chr3_3:51993446-51993465 None:intergenic 55.0%
CGTGCCCTAGAACTCTCTGT+CGG + chr3_3:51993444-51993463 Msa0457290:CDS 55.0%
!!! TGGTTTTGGTGGTGGGGAGA+CGG - chr3_3:51993482-51993501 None:intergenic 55.0%
!! CTAGAAGATGGTGGTGGTGG+CGG - chr3_3:51993789-51993808 None:intergenic 55.0%
CTTTCACCGTTCTCCTCCTC+CGG + chr3_3:51993812-51993831 Msa0457290:CDS 55.0%
CGAACCGTTTCAAACCGGTC+AGG - chr3_3:51993858-51993877 None:intergenic 55.0%
GTGGACCCAGGTTTACCTCT+AGG + chr3_3:51996243-51996262 Msa0457290:intron 55.0%
CCACTGCCTAGAGGTAAACC+TGG - chr3_3:51996252-51996271 None:intergenic 55.0%
CCAGGTTTACCTCTAGGCAG+TGG + chr3_3:51996249-51996268 Msa0457290:intron 55.0%
!! ATGGAAGTGCCACTGCCTAG+AGG - chr3_3:51996261-51996280 None:intergenic 55.0%
CGGACACTGTGTTCCGACTT+TGG + chr3_3:51996727-51996746 Msa0457290:intron 55.0%
GTTCCAAGCTCCATTCCACG+AGG + chr3_3:51997126-51997145 Msa0457290:CDS 55.0%
TCCAAGCTCCATTCCACGAG+GGG + chr3_3:51997128-51997147 Msa0457290:CDS 55.0%
TACCGAATCGAAACCCCTCG+TGG - chr3_3:51997144-51997163 None:intergenic 55.0%
!! GAGGGGTTTCGATTCGGTAG+AGG + chr3_3:51997145-51997164 Msa0457290:CDS 55.0%
GCTTAGGAGGAAGACAGTCG+TGG + chr3_3:51997891-51997910 Msa0457290:CDS 55.0%
TCCTCCGCTTCCTCTTCTAG+AGG - chr3_3:51998384-51998403 None:intergenic 55.0%
CTAGAAGAGGAAGCGGAGGA+TGG + chr3_3:51998384-51998403 Msa0457290:CDS 55.0%
CATTGGCGCGCTGTGCTAAC+CGG - chr3_3:51993240-51993259 None:intergenic 60.0%
GTGGCTACGTCTACGCGCTA+TGG - chr3_3:51993304-51993323 None:intergenic 60.0%
AGCGGAGATAGCGTGGAGAG+AGG - chr3_3:51993337-51993356 None:intergenic 60.0%
!! CGGCGCGTAGAGTATTGGAG+GGG - chr3_3:51993371-51993390 None:intergenic 60.0%
!! GCGGCGCGTAGAGTATTGGA+GGG - chr3_3:51993372-51993391 None:intergenic 60.0%
AGGGGAGTAAGGGAAGGTGG+TGG - chr3_3:51993412-51993431 None:intergenic 60.0%
ACGAGGGGAGTAAGGGAAGG+TGG - chr3_3:51993415-51993434 None:intergenic 60.0%
GAGACGAGGGGAGTAAGGGA+AGG - chr3_3:51993418-51993437 None:intergenic 60.0%
ACCGTCATCTCCGGAGGAGA+CGG - chr3_3:51993511-51993530 None:intergenic 60.0%
ACCCCTCGTGGAATGGAGCT+TGG - chr3_3:51997132-51997151 None:intergenic 60.0%
!! AGAGGCGTCACGGTCGTATC+TGG + chr3_3:51998347-51998366 Msa0457290:CDS 60.0%
! GCCTCTAGAAGAGGAAGCGG+AGG + chr3_3:51998380-51998399 Msa0457290:CDS 60.0%
!! CTAACCGGCGTCGGCATCAC+CGG - chr3_3:51993225-51993244 None:intergenic 65.0%
!! GGCGGCGCGTAGAGTATTGG+AGG - chr3_3:51993373-51993392 None:intergenic 65.0%
GCAGGCGGCGCGTAGAGTAT+TGG - chr3_3:51993376-51993395 None:intergenic 65.0%
GGCGCGTGAACATGAGCAGG+CGG - chr3_3:51993391-51993410 None:intergenic 65.0%
GGTGGCGCGTGAACATGAGC+AGG - chr3_3:51993394-51993413 None:intergenic 65.0%
GGCACGGAAGTGGAGACGAG+GGG - chr3_3:51993430-51993449 None:intergenic 65.0%
GGGCACGGAAGTGGAGACGA+GGG - chr3_3:51993431-51993450 None:intergenic 65.0%
AGGGCACGGAAGTGGAGACG+AGG - chr3_3:51993432-51993451 None:intergenic 65.0%
!! GGTGGTGGGGAGACGGTCTA+GGG - chr3_3:51993475-51993494 None:intergenic 65.0%
!! TGGTGGTGGGGAGACGGTCT+AGG - chr3_3:51993476-51993495 None:intergenic 65.0%
!!! CGGCGGTGGTTTTGGTGGTG+GGG - chr3_3:51993488-51993507 None:intergenic 65.0%
!!! GCGGCGGTGGTTTTGGTGGT+GGG - chr3_3:51993489-51993508 None:intergenic 65.0%
GTCATCTCCGGAGGAGACGG+CGG - chr3_3:51993508-51993527 None:intergenic 65.0%
GCCGTCTCCTCCGGAGATGA+CGG + chr3_3:51993507-51993526 Msa0457290:CDS 65.0%
! GTCTCCTCCGGAGATGACGG+TGG + chr3_3:51993510-51993529 Msa0457290:CDS 65.0%
!! GAAGATGGTGGTGGTGGCGG+TGG - chr3_3:51993786-51993805 None:intergenic 65.0%
! TCAGGCGACGGAAAGCGCAG+TGG + chr3_3:51997688-51997707 Msa0457290:CDS 65.0%
CTTGCCGGTGATGCCGACGC+CGG + chr3_3:51993218-51993237 Msa0457290:exon 70.0%
CGCGCTGTGCTAACCGGCGT+CGG - chr3_3:51993234-51993253 None:intergenic 70.0%
!!! GGCGGCGGTGGTTTTGGTGG+TGG - chr3_3:51993490-51993509 None:intergenic 70.0%
!!! GACGGCGGCGGTGGTTTTGG+TGG - chr3_3:51993493-51993512 None:intergenic 70.0%
! GGAGACGGCGGCGGTGGTTT+TGG - chr3_3:51993496-51993515 None:intergenic 70.0%
ATCTCCGGAGGAGACGGCGG+CGG - chr3_3:51993505-51993524 None:intergenic 70.0%
TGGGCCACCGTCATCTCCGG+AGG - chr3_3:51993517-51993536 None:intergenic 70.0%
CGGTGGGCCACCGTCATCTC+CGG - chr3_3:51993520-51993539 None:intergenic 70.0%
! CGGAGATGACGGTGGCCCAC+CGG + chr3_3:51993518-51993537 Msa0457290:CDS 70.0%
!! GATGGTGGTGGTGGCGGTGG+TGG - chr3_3:51993783-51993802 None:intergenic 70.0%
ACCACCGCCGCCGTCTCCTC+CGG + chr3_3:51993498-51993517 Msa0457290:CDS 75.0%
! TCCGGAGGAGACGGCGGCGG+TGG - chr3_3:51993502-51993521 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 51992971 51999099 51992971 ID=Msa0457290;Name=Msa0457290
chr3_3 mRNA 51992971 51999099 51992971 ID=Msa0457290-mRNA-1;Parent=Msa0457290;Name=Msa0457290-mRNA-1;_AED=0.11;_eAED=0.11;_QI=257|1|1|1|1|1|3|287|1082
chr3_3 exon 51992971 51994435 51992971 ID=Msa0457290-mRNA-1:exon:9986;Parent=Msa0457290-mRNA-1
chr3_3 exon 51995644 51995869 51995644 ID=Msa0457290-mRNA-1:exon:9987;Parent=Msa0457290-mRNA-1
chr3_3 exon 51996998 51999099 51996998 ID=Msa0457290-mRNA-1:exon:9988;Parent=Msa0457290-mRNA-1
chr3_3 five_prime_UTR 51992971 51993227 51992971 ID=Msa0457290-mRNA-1:five_prime_utr;Parent=Msa0457290-mRNA-1
chr3_3 CDS 51993228 51994435 51993228 ID=Msa0457290-mRNA-1:cds;Parent=Msa0457290-mRNA-1
chr3_3 CDS 51995644 51995869 51995644 ID=Msa0457290-mRNA-1:cds;Parent=Msa0457290-mRNA-1
chr3_3 CDS 51996998 51998812 51996998 ID=Msa0457290-mRNA-1:cds;Parent=Msa0457290-mRNA-1
chr3_3 three_prime_UTR 51998813 51999099 51998813 ID=Msa0457290-mRNA-1:three_prime_utr;Parent=Msa0457290-mRNA-1
Gene Sequence

>Msa0457290

ATGCCGACGCCGGTTAGCACAGCGCGCCAATGTTTAACTGACGAAGCAGCGCGTGCTCTCGACGAAGCAGTCTCCATAGCGCGTAGACGTAGCCACCCTCAAACAACCTCTCTCCACGCTATCTCCGCTTTACTTTCTCTCCCCTCCAATACTCTACGCGCCGCCTGCTCATGTTCACGCGCCACCACCTTCCCTTACTCCCCTCGTCTCCACTTCCGTGCCCTAGAACTCTCTGTCGGAGTCTCCCTAGACCGTCTCCCCACCACCAAAACCACCGCCGCCGTCTCCTCCGGAGATGACGGTGGCCCACCGGTTTCCAACTCTCTCATGGCAGCCATTAAACGCTCTCAAGCAAACCAACGTCGTCATCCAGATAGCTTCCATTTACTACAGATAATGCAGCAACAGCAACAAAACCAGAATCAAACTGCGTCGTTTTTGAAAGTTGAGTTGAAGCATTTCATTCTCTCTATTCTTGATGATCCTATAGTGAGTAGGGTTTTTGCAGAAGCTGGTTTTCGTAGCTATGATGTTAAGTTTGCTTTACTTCAACCACCACCGCCACCACCACCATCTTCTAGATTCTTTCACCGTTCTCCTCCTCCGGTTTTTTTATGTAATATTGAACCTGACCGGTTTGAAACGGTTCGGTTCGATGAGAATTCAAGAAGGGTTGTTGATGTTTTATCTGGGAAGAGTGGGAGTAAGAGAAATCCTCTTTTGATGGGTGTTTATGCAAAAACCGCTTTAAAAAGGTTTATAGAGTTAGCTCAAAGTGGAAAAGTTGGTTTTTTACCTACTGAGCTTGATGGGTTAAAAGTAGTTTCTATTGAGAATGAAATTTTTGAGTTTGTTATTGGAAATGGGAGTGAGGAGAAGATGGGGTTGAGATTTGATGAAGTGGGTCATTTAGTTGAACAAAGTTTATGTACTGGTGTTGTTCTAAGTTTTGGGGAGATTGAGGTTTTTGTGAAGAACAATAACGATGATGATGTTATTGATGATGGTGTTGTGTTTGTTGTTTCAAGGTTAACAAGGTTGTTGGAGGTTTATGGTGGGAAGATTTGGTTGGTGGGTGTAGCAGGAAATTGTGATGTTTATACTAAGTTTTTGAGGTTGTTCCCTAATGTTGAAAAAGATTTGGATTTGCATGTTTTACCTGTGACATCTGCTACTCCTTCTATGGAAGGACTATACTCTAAATCCAGCTTAATGGGGTCTTTTGTTCCATTTGGTGGCTTCTTTTCCACACCTTCTGATTTCAGAAATCCAAATCCATCATCTTTAACTCTTTGTGACACATGCAATAAAAAGTATGAACAAGAAGTTGCTGATAATTATGTGAATGTAGGACCTTCTTCTTCATCATCAACAAGTTTACCTTGGTTACAAAAGGTTAATGTGGATTCAGATAGAGGATTAGGTTTGGCAAAGACCAATGAAGATAACACAAGTTTGAATGCTAAGATCTTCGGATTGCAGAGGAAATGGAGTGATATCTGTCAACATCTTCATCAAAACAAACCATTACCTGAAATCAATATTTCCCAAACATTAACAGGGTTCCAAGCTCCATTCCACGAGGGGTTTCGATTCGGTAGAGGAACTAGCAGCCTTAATGAAATCCACTGTTCTAATCCAATTCCCTACATGTCTAAAGAGTTACAAACTCCATTTCCATCCAAACAGATGTTACCATTTTCACAACCTTTTGATACTACTCTTAGTGCCAAAGATAAAGCTGAACATGTACCGAAAGTTTCAAAATTCGATGTACAAAATCCTTTCCTTAACCACAAGTCATCTATGTCCCTTAATCCCATCACCACAGATTTGGTTTTGGGAACGACATATACACCGGTTACTCATGAGCCAGATACCCCGAAACTAAGTGATCATAAGAAGCATCTTCAGCACTTGTCGGATTCTCTTTCGACTGATTTTGATGCTATGAATGAGAGTACTTCAAACCAAATTGCTAGATCCTCTTCCTACTCAGGTCATAATTCCGACGGAAAATTTGAAATGGTTGATTTCAAGTCACTTTACAAACTTCTTATCGAAAAAGTTTGGTGGCAAGATGAGGCAATATATTCTATCATCAATATTATGACACTTTGTAGATCAGGCGACGGAAAGCGCAGTGGATCAAATGTTAGAGCCGACACATGGTTTTCTTTTCTTGGGCCAGATAGAGTCGGAAAAAGAAAAATTGCTTCAGTACTTGCAGAAACTCTATTTGGAAGCAAACAATGCTTAATCTCAGTGGATTTAAGCTCTAAGGACACGTTTCAACCATTGAACTCGATTTTCGAATGTCACGATGTGCTTAGGAGGAAGACAGTCGTGGATTATATTGCTGGCGAGTTGAGTAAAAAGCCACGTTCGGTTGTGTTTCTTGAAAATATCGATAAAGCTGATTTAATTGTGCAGAATAGTTTGTTACAAGCAATAAGAACAGGTAAATTTCCATACTCACATGGTAGGGAAATCAGCATCAACAATTCAATATTTGTTGTGACCTCTTCTGTGTTCAAAGTTGGCGGCTTTTTTGATATGGAAAAGGAACCAAAGATATTTCCCGAGGAAAGAATCCTTGAAGCTAAAAGATGTCAAATTGAACTATCACTTGGACATGCTTCTGAGGATGTCTTTAGAAGCAGTAGCAAAAACGTGAGGGTTTCAAAGAGAAATGGAGCATTTCTGAATAAAAGAAAGCTCTGTGAAACTGAAAGCAGTGATTCCAATGAAAAAGTAACTAGCAAGACAATGAAACATAACAAAGAGGCGTCACGGTCGTATCTGGATTTGAATATGCCTCTAGAAGAGGAAGCGGAGGATGGTGATTGTGAAAATGAATCTGTAGTTCAAAATCATGAAACATGGTTAAATGATTTCCTTGCACAAATTGATGGAAAAGTGGTTTTTAAGCCATTCAATTTTGATTTACTTGCTGAGCAAGTAATCGAACACATTGACAAACAATTTCAAACACCATTTGGATCAAATTTTGTGCTGGAAATTGATTACGAGGTCATGTCAGAGATACTTGCAGCTGCTTGGCTATCAGACAAGAAAAAAGCAGTGGAAGATTGGATTGAACATGTTCTCGGAAACAGCTTTGTCGAGGCACAAAAAAAGTATCGCAATGTAGCTGAATATGTAATGAAATTGGTTAAATGTGAAAGCATTTTTGTGGAAGAGCAAGCTACAGGAGTATGCCTTCCAGCTAGAATTAACGTGAACTAA
Protein sequence

>Msa0457290

MPTPVSTARQCLTDEAARALDEAVSIARRRSHPQTTSLHAISALLSLPSNTLRAACSCSRATTFPYSPRLHFRALELSVGVSLDRLPTTKTTAAVSSGDDGGPPVSNSLMAAIKRSQANQRRHPDSFHLLQIMQQQQQNQNQTASFLKVELKHFILSILDDPIVSRVFAEAGFRSYDVKFALLQPPPPPPPSSRFFHRSPPPVFLCNIEPDRFETVRFDENSRRVVDVLSGKSGSKRNPLLMGVYAKTALKRFIELAQSGKVGFLPTELDGLKVVSIENEIFEFVIGNGSEEKMGLRFDEVGHLVEQSLCTGVVLSFGEIEVFVKNNNDDDVIDDGVVFVVSRLTRLLEVYGGKIWLVGVAGNCDVYTKFLRLFPNVEKDLDLHVLPVTSATPSMEGLYSKSSLMGSFVPFGGFFSTPSDFRNPNPSSLTLCDTCNKKYEQEVADNYVNVGPSSSSSTSLPWLQKVNVDSDRGLGLAKTNEDNTSLNAKIFGLQRKWSDICQHLHQNKPLPEINISQTLTGFQAPFHEGFRFGRGTSSLNEIHCSNPIPYMSKELQTPFPSKQMLPFSQPFDTTLSAKDKAEHVPKVSKFDVQNPFLNHKSSMSLNPITTDLVLGTTYTPVTHEPDTPKLSDHKKHLQHLSDSLSTDFDAMNESTSNQIARSSSYSGHNSDGKFEMVDFKSLYKLLIEKVWWQDEAIYSIINIMTLCRSGDGKRSGSNVRADTWFSFLGPDRVGKRKIASVLAETLFGSKQCLISVDLSSKDTFQPLNSIFECHDVLRRKTVVDYIAGELSKKPRSVVFLENIDKADLIVQNSLLQAIRTGKFPYSHGREISINNSIFVVTSSVFKVGGFFDMEKEPKIFPEERILEAKRCQIELSLGHASEDVFRSSSKNVRVSKRNGAFLNKRKLCETESSDSNEKVTSKTMKHNKEASRSYLDLNMPLEEEAEDGDCENESVVQNHETWLNDFLAQIDGKVVFKPFNFDLLAEQVIEHIDKQFQTPFGSNFVLEIDYEVMSEILAAAWLSDKKKAVEDWIEHVLGNSFVEAQKKYRNVAEYVMKLVKCESIFVEEQATGVCLPARINVN*