AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0367780

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0367780 MtrunA17_Chr3g0109791 92.334 287 21 1 1 286 2 288 0.0 513
Msa0367780 MtrunA17_Chr5g0433851 59.298 285 106 5 18 293 4 287 4.41e-95 287
Msa0367780 MtrunA17_Chr6g0481061 45.263 285 133 9 1 269 1 278 1.91e-49 171
Msa0367780 MtrunA17_Chr1g0181771 56.122 98 35 1 45 142 36 125 4.45e-34 126
Msa0367780 MtrunA17_Chr8g0348391 40.437 183 88 3 16 196 24 187 1.35e-31 120
Msa0367780 MtrunA17_Chr6g0469431 52.941 102 40 1 36 137 30 123 4.18e-31 116
Msa0367780 MtrunA17_Chr7g0276421 65.049 103 34 1 37 137 7 109 6.77e-31 122
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0367780 AT5G17300.1 49.813 267 97 5 15 271 4 243 5.12e-57 189
Msa0367780 AT5G37260.1 46.215 251 60 6 33 272 12 198 2.40e-51 171
Msa0367780 AT1G18330.1 51.799 139 56 1 43 181 37 164 2.79e-33 125
Msa0367780 AT3G10113.1 51.799 139 56 1 43 181 52 179 2.99e-33 125
Msa0367780 AT1G18330.2 51.799 139 56 1 43 181 63 190 6.38e-33 125
Msa0367780 AT3G09600.1 54.455 101 38 1 37 137 24 116 2.27e-32 122
Msa0367780 AT3G09600.7 54.455 101 38 1 37 137 24 116 2.27e-32 122
Msa0367780 AT3G09600.4 54.455 101 38 1 37 137 24 116 2.43e-32 121
Msa0367780 AT3G09600.2 54.455 101 38 1 37 137 24 116 2.49e-32 121
Msa0367780 AT3G09600.6 54.455 101 38 1 37 137 24 116 2.49e-32 121
Msa0367780 AT1G01520.2 41.477 176 83 5 20 195 26 181 1.10e-31 119
Msa0367780 AT1G01520.4 41.477 176 83 5 20 195 26 181 1.10e-31 119
Msa0367780 AT1G01520.3 41.477 176 83 5 20 195 26 181 1.57e-31 119
Msa0367780 AT1G01520.1 41.477 176 83 5 20 195 26 181 1.67e-31 119
Msa0367780 AT4G01280.1 53.043 115 44 2 23 137 28 132 1.15e-30 117
Msa0367780 AT4G01280.2 53.043 115 44 2 23 137 28 132 1.17e-30 117
Msa0367780 AT2G46830.1 57.851 121 45 2 37 155 5 121 1.58e-30 121
Msa0367780 AT5G02840.3 55.914 93 33 1 45 137 37 121 2.11e-30 116
Msa0367780 AT5G02840.1 55.914 93 33 1 45 137 37 121 2.25e-30 116
Msa0367780 AT5G02840.2 55.914 93 33 1 45 137 37 121 2.25e-30 116
Msa0367780 AT5G02840.4 55.914 93 33 1 45 137 37 121 2.28e-30 116
Msa0367780 AT5G02840.5 55.914 93 33 1 45 137 37 121 3.52e-30 116
Msa0367780 AT5G52660.1 53.465 101 39 1 37 137 53 145 3.59e-30 117
Msa0367780 AT5G52660.2 53.465 101 39 1 37 137 53 145 3.81e-30 117
Msa0367780 AT1G01060.8 57.143 126 51 2 45 167 13 138 1.02e-29 119
Msa0367780 AT1G01060.2 57.143 126 51 2 45 167 13 138 1.02e-29 119
Msa0367780 AT1G01060.3 57.143 126 51 2 45 167 13 138 1.02e-29 119
Msa0367780 AT1G01060.1 57.143 126 51 2 45 167 13 138 1.02e-29 119
Msa0367780 AT1G01060.7 57.143 126 51 2 45 167 13 138 1.02e-29 119
Msa0367780 AT1G01060.4 57.143 126 51 2 45 167 13 138 1.05e-29 119
Msa0367780 AT5G17300.2 45.026 191 78 4 81 271 5 168 3.17e-22 95.1
Msa0367780 AT3G09600.5 50.000 64 24 1 74 137 5 60 2.09e-15 74.7
Msa0367780 AT3G09600.9 50.000 64 24 1 74 137 5 60 2.09e-15 74.7
Msa0367780 AT3G09600.3 50.000 64 24 1 74 137 5 60 2.10e-15 74.7
Msa0367780 AT3G09600.8 50.000 64 24 1 74 137 5 60 2.10e-15 74.7

Find 127 sgRNAs with CRISPR-Local

Find 278 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCCCGGCCATACAGCTTTA+AGG 0.174526 3_1:-63676992 None:intergenic
GTGGATCTTATATAAAATTT+AGG 0.186945 3_1:+63679077 Msa0367780:three_prime_UTR
TAACATGGTAATGTAGAAAT+TGG 0.201383 3_1:-63678736 None:intergenic
GACAACTAGTCTATCTAAAA+AGG 0.206857 3_1:-63678263 None:intergenic
CTTACATGGTTTCTCATTAG+AGG 0.261251 3_1:+63674676 Msa0367780:five_prime_UTR
CGCGAATGATTATGCTCTTA+AGG 0.273107 3_1:+63676790 Msa0367780:CDS
CTCTGTTTCGATATAGTATA+TGG 0.282091 3_1:-63676928 None:intergenic
TGAAATGTGTTAAATGAGTT+TGG 0.299858 3_1:+63678578 Msa0367780:three_prime_UTR
AACTTTGCCTTTGGTTTCTC+AGG 0.300050 3_1:-63674779 None:intergenic
AGAAATTTCAATCCCGAAAA+AGG 0.302937 3_1:+63677517 Msa0367780:CDS
GCCTCAATTGTTGGAAAAGA+TGG 0.309622 3_1:-63678001 None:intergenic
GTCTCCTTCAACTTTGCCTT+TGG 0.311115 3_1:-63674788 None:intergenic
GGAGGAAAATTGGAACTTCT+TGG 0.327774 3_1:+63678060 Msa0367780:CDS
TAGAAAGGGAGGAGGAAAAT+TGG 0.340113 3_1:+63678050 Msa0367780:CDS
AGGAATTTCAATTGATTCCT+TGG 0.346980 3_1:-63677426 None:intergenic
AAGTGTAGATAAAACTGATT+TGG 0.347735 3_1:-63677594 None:intergenic
ATGAGCTGGTAACATGAAAA+AGG 0.349426 3_1:+63678358 Msa0367780:three_prime_UTR
TCTTACTCTTAATTGAGATA+TGG 0.349705 3_1:-63678109 None:intergenic
TCTGAGCATGACTTCGAATC+TGG 0.349813 3_1:-63677175 None:intergenic
CACAACCTTTGAGTTAGCTT+TGG 0.359495 3_1:-63678609 None:intergenic
ATAAAACTGATTTGGGAGAT+TGG 0.361687 3_1:-63677586 None:intergenic
AAGGGTTTGTGCCATATAAA+AGG 0.376865 3_1:+63678154 Msa0367780:three_prime_UTR
TCTAACATGTATGTCATGAT+TGG 0.376918 3_1:-63678031 None:intergenic
CTGAGTTGAATATGAGTAAC+AGG 0.381118 3_1:-63676752 None:intergenic
CAGCTGTTGCAGATGAAGAT+TGG 0.383510 3_1:-63678197 None:intergenic
TCAACTAGCTTGCGAGGATA+AGG 0.387638 3_1:-63677479 None:intergenic
TCATGATGAGAAACCTCTTC+TGG 0.400783 3_1:+63677766 Msa0367780:CDS
ACAACCTTTGAGTTAGCTTT+GGG 0.402792 3_1:-63678608 None:intergenic
GGTTTACATGCCTCAATTGT+TGG 0.414004 3_1:-63678010 None:intergenic
ATCGGATGAACCAAGGCTTT+CGG 0.424992 3_1:-63677621 None:intergenic
CGGGCCTGGCGACGCATTGA+AGG 0.426529 3_1:+63677009 Msa0367780:CDS
GGGTGCATAGGCTTACGTTT+TGG 0.427838 3_1:-63677458 None:intergenic
AGTGTAGATAAAACTGATTT+GGG 0.427868 3_1:-63677593 None:intergenic
CTTGAAGCCTTAAAGCTGTA+TGG 0.441266 3_1:+63676985 Msa0367780:CDS
TATTCTCACATTTACCATGA+TGG 0.443229 3_1:+63679030 Msa0367780:three_prime_UTR
TCCGTTTGGTGTATCTGAAT+CGG 0.446379 3_1:-63677639 None:intergenic
TACTTAGATTAACAGACTGT+TGG 0.447326 3_1:-63678825 None:intergenic
GGCACGAAACTTGTGGGAAA+GGG 0.447526 3_1:+63678136 Msa0367780:three_prime_UTR
TGGTCCTTGATATATTTAAA+CGG 0.449429 3_1:-63679118 None:intergenic
CAGGTCTGAAAACACTTGCT+TGG 0.457820 3_1:-63677691 None:intergenic
GTCACGTCTAGTGTGAGTCT+TGG 0.459602 3_1:+63678711 Msa0367780:three_prime_UTR
TCACGTCTAGTGTGAGTCTT+GGG 0.461030 3_1:+63678712 Msa0367780:three_prime_UTR
CAACTAGCTTGCGAGGATAA+GGG 0.462388 3_1:-63677478 None:intergenic
TTACAAACTATCTCATAGTC+TGG 0.462952 3_1:+63674557 Msa0367780:five_prime_UTR
CAAAGCTAACTCAAAGGTTG+TGG 0.464336 3_1:+63678610 Msa0367780:three_prime_UTR
ATCGGAGATAAACTTCCGTT+TGG 0.465599 3_1:-63677653 None:intergenic
TTCAAAATGTAGGATCAAGA+TGG 0.466323 3_1:+63676677 Msa0367780:intron
TAAAGCTGTATGGCCGGGCC+TGG 0.467187 3_1:+63676995 Msa0367780:CDS
ATGAGAAACCATGTAAGAAA+AGG 0.468558 3_1:-63674670 None:intergenic
TGGACACAACTAATCAATAT+CGG 0.468987 3_1:-63677671 None:intergenic
CATACAGCTTTAAGGCTTCA+AGG 0.472400 3_1:-63676984 None:intergenic
CACAGCTGTAGCTTATGTAT+AGG 0.476680 3_1:-63678331 None:intergenic
CCAGCTACATTTCCTACTGC+AGG 0.478856 3_1:-63676722 None:intergenic
ATCAGTGATTTCTGCAGCTA+TGG 0.483934 3_1:+63674815 Msa0367780:exon
CTTCAATGCGTCGCCAGGCC+CGG 0.484298 3_1:-63677008 None:intergenic
TCATGACATACATGTTAGAA+AGG 0.487347 3_1:+63678035 Msa0367780:CDS
CATACCTTCAATGCGTCGCC+AGG 0.491595 3_1:-63677013 None:intergenic
GATCCACAATAAGACCTTGT+TGG 0.491612 3_1:-63679061 None:intergenic
AAGCCTTAAAGCTGTATGGC+CGG 0.499730 3_1:+63676989 Msa0367780:CDS
GTCGGATGTATATATGCGGT+TGG 0.502041 3_1:-63678637 None:intergenic
TACAGCTGTGGTGGATGAGC+TGG 0.504935 3_1:+63678344 Msa0367780:three_prime_UTR
GAAACCAAAGGCAAAGTTGA+AGG 0.514597 3_1:+63674784 Msa0367780:five_prime_UTR
GCTGCAGAAATCACTGATCA+AGG 0.525636 3_1:-63674810 None:intergenic
AGGAAGTTAGTTACCAGAAG+AGG 0.529786 3_1:-63677779 None:intergenic
GACAATTCACAGCTGAAAGT+GGG 0.533332 3_1:-63678476 None:intergenic
GAGTGAGGCACGAAACTTGT+GGG 0.534531 3_1:+63678130 Msa0367780:three_prime_UTR
ACACTTGGTTCCGAAAGCCT+TGG 0.534605 3_1:+63677611 Msa0367780:CDS
AGCCTAGCTTCTTCCTCTGA+TGG 0.534831 3_1:-63677728 None:intergenic
TAGTCCGTTTAAATATATCA+AGG 0.535923 3_1:+63679114 Msa0367780:three_prime_UTR
AGGCACGAAACTTGTGGGAA+AGG 0.537353 3_1:+63678135 Msa0367780:three_prime_UTR
AAAGCTAACTCAAAGGTTGT+GGG 0.537413 3_1:+63678611 Msa0367780:three_prime_UTR
AATCTTGTGGCTCACGTCCA+AGG 0.538281 3_1:-63674397 None:intergenic
TGTTGGTAGTAATTCCATCA+TGG 0.545383 3_1:-63679044 None:intergenic
TCGGATGTATATATGCGGTT+GGG 0.548278 3_1:-63678636 None:intergenic
TTACGCCTAGTGCCTATCGT+GGG 0.551227 3_1:+63678882 Msa0367780:three_prime_UTR
TATCGAAACAGAGAGAAAGA+TGG 0.552512 3_1:+63676938 Msa0367780:CDS
GTCTGTTAATCTAAGTAATG+TGG 0.552661 3_1:+63678831 Msa0367780:three_prime_UTR
TCCTACTGCAGGGCTAACAC+TGG 0.552965 3_1:-63676711 None:intergenic
AGACAATTCACAGCTGAAAG+TGG 0.553041 3_1:-63678477 None:intergenic
AGCCTTAAAGCTGTATGGCC+GGG 0.555613 3_1:+63676990 Msa0367780:CDS
ACACATGTTCATGACAACCT+TGG 0.558267 3_1:+63674380 Msa0367780:five_prime_UTR
CATGACATACATGTTAGAAA+GGG 0.558691 3_1:+63678036 Msa0367780:CDS
CGCCATCAGAGGAAGAAGCT+AGG 0.562418 3_1:+63677726 Msa0367780:CDS
TACATAAGCTACAGCTGTGG+TGG 0.568248 3_1:+63678335 Msa0367780:three_prime_UTR
TCCTCGCAAGCTAGTTGAGA+TGG 0.569053 3_1:+63677484 Msa0367780:CDS
TCCGATTCAGATACACCAAA+CGG 0.581293 3_1:+63677638 Msa0367780:CDS
TTTCGTAACTCTTGATATCA+CGG 0.581340 3_1:+63678288 Msa0367780:three_prime_UTR
GTTGGATGTATATATGTGGT+TGG 0.587633 3_1:-63678807 None:intergenic
CTTACGCCTAGTGCCTATCG+TGG 0.588190 3_1:+63678881 Msa0367780:three_prime_UTR
CAACAACGTTGACAATTCAT+CGG 0.589091 3_1:+63674718 Msa0367780:five_prime_UTR
TCATCCCAAAGCTAACTCAA+AGG 0.591132 3_1:+63678604 Msa0367780:three_prime_UTR
TTGCGAGGATAAGGGTGCAT+AGG 0.596615 3_1:-63677470 None:intergenic
GACATACATGTTAGAAAGGG+AGG 0.598447 3_1:+63678039 Msa0367780:CDS
TGGGAATTGAACCCCACGAT+AGG 0.607335 3_1:-63678894 None:intergenic
CCTGCAGTAGGAAATGTAGC+TGG 0.607570 3_1:+63676722 Msa0367780:CDS
CTCAATTAAGAGTAAGAGTG+AGG 0.608517 3_1:+63678115 Msa0367780:exon
CTACCAACAAGGTCTTATTG+TGG 0.609966 3_1:+63679058 Msa0367780:three_prime_UTR
ACAATTCACAGCTGAAAGTG+GGG 0.612141 3_1:-63678475 None:intergenic
TGAACCCCACGATAGGCACT+AGG 0.612545 3_1:-63678887 None:intergenic
TTATCTCCGACGTGGAAATG+TGG 0.618138 3_1:-63674432 None:intergenic
TGAATTCAAAACGCCATCAG+AGG 0.625902 3_1:+63677715 Msa0367780:CDS
CGCAAGCTAGTTGAGATGGT+CGG 0.633361 3_1:+63677488 Msa0367780:CDS
ATACATGTTAGAAAGGGAGG+AGG 0.634259 3_1:+63678042 Msa0367780:CDS
ATTACCATGTTAAATGTGTG+TGG 0.634800 3_1:+63678747 Msa0367780:three_prime_UTR
ACCATCTCAACTAGCTTGCG+AGG 0.635742 3_1:-63677485 None:intergenic
CAGCTACATTTCCTACTGCA+GGG 0.637750 3_1:-63676721 None:intergenic
CAATTCACAGCTGAAAGTGG+GGG 0.645805 3_1:-63678474 None:intergenic
GACTGTTGGATGTATATATG+TGG 0.646552 3_1:-63678811 None:intergenic
AAAAGTTAGTTCAAGTAACG+AGG 0.653192 3_1:+63678780 Msa0367780:three_prime_UTR
TACGCCTAGTGCCTATCGTG+GGG 0.657217 3_1:+63678883 Msa0367780:three_prime_UTR
AATTCACAGCTGAAAGTGGG+GGG 0.659935 3_1:-63678473 None:intergenic
TAGGCACTAGGCGTAAGAGT+AGG 0.663904 3_1:-63678875 None:intergenic
AAAGTTAGTTCAAGTAACGA+GGG 0.664614 3_1:+63678781 Msa0367780:three_prime_UTR
TATCTGAATCGGATGAACCA+AGG 0.665190 3_1:-63677628 None:intergenic
AGATCCACACACATTTAACA+TGG 0.676563 3_1:-63678751 None:intergenic
TCCAGTGTTAGCCCTGCAGT+AGG 0.679374 3_1:+63676710 Msa0367780:CDS
ACTTCTCCACATTTCCACGT+CGG 0.681365 3_1:+63674426 Msa0367780:five_prime_UTR
ACTCACACTAGACGTGACAG+TGG 0.682348 3_1:-63678706 None:intergenic
AGAGTGAGGCACGAAACTTG+TGG 0.683163 3_1:+63678129 Msa0367780:three_prime_UTR
CTCACACTAGACGTGACAGT+GGG 0.693324 3_1:-63678705 None:intergenic
GAGAAGTTGAATGAATCTTG+TGG 0.697703 3_1:-63674410 None:intergenic
TGCAAGCATTACAAACACCA+AGG 0.703682 3_1:+63677409 Msa0367780:CDS
TGATGGAATTACTACCAACA+AGG 0.705107 3_1:+63679047 Msa0367780:three_prime_UTR
TGAGATAGTTTGTAACAGTG+AGG 0.706150 3_1:-63674549 None:intergenic
CTATACATAAGCTACAGCTG+TGG 0.706440 3_1:+63678332 Msa0367780:three_prime_UTR
GAATGTCGGATGTATATATG+CGG 0.710458 3_1:-63678641 None:intergenic
ATATGTCAGTTCAAAGACTG+CGG 0.716047 3_1:+63677151 Msa0367780:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTTATTAAAAAATATAA+AGG - chr3_1:63675251-63675270 None:intergenic 0.0%
!! AAAATTTAGATAAGTAAAAT+TGG + chr3_1:63675092-63675111 Msa0367780:intron 10.0%
!!! AAAAACTTAATGAATATTTT+AGG - chr3_1:63675172-63675191 None:intergenic 10.0%
!!! TTAATAAATTTTTCTAGAAA+TGG + chr3_1:63675260-63675279 Msa0367780:intron 10.0%
!!! ACAAATTTTCTATTTTTTTT+AGG - chr3_1:63675760-63675779 None:intergenic 10.0%
!! TTAAAAATAAAAATCATGTT+TGG - chr3_1:63675900-63675919 None:intergenic 10.0%
!!! CCTGAATTTTTATTTTTAAT+CGG - chr3_1:63674345-63674364 None:intergenic 15.0%
!!! AAAAAGTAAGTATTTTTTGA+CGG - chr3_1:63675027-63675046 None:intergenic 15.0%
!!! ATATTGTCATAATTTTTTAG+AGG + chr3_1:63675414-63675433 Msa0367780:intron 15.0%
!! TCAAATAATGGTATAATTAT+AGG + chr3_1:63675474-63675493 Msa0367780:intron 15.0%
!! CAAATAATGGTATAATTATA+GGG + chr3_1:63675475-63675494 Msa0367780:intron 15.0%
!!! TTTTTCATAAAATAAGTTAG+CGG - chr3_1:63675533-63675552 None:intergenic 15.0%
!!! AATAATATTGAGATTTTTGT+GGG - chr3_1:63676092-63676111 None:intergenic 15.0%
!!! TAATAATATTGAGATTTTTG+TGG - chr3_1:63676093-63676112 None:intergenic 15.0%
!!! ATTTTTCTATTTCAAAATGT+AGG + chr3_1:63676667-63676686 Msa0367780:intron 15.0%
!!! GAATTTTTATTTTTAATCGG+TGG - chr3_1:63674342-63674361 None:intergenic 20.0%
!! CCGATTAAAAATAAAAATTC+AGG + chr3_1:63674342-63674361 Msa0367780:five_prime_UTR 20.0%
!!! AAAAGTATGGATTAATTTCA+TGG - chr3_1:63675216-63675235 None:intergenic 20.0%
!!! TGATTTGGTATAATTGATTT+TGG + chr3_1:63675815-63675834 Msa0367780:intron 20.0%
!!! AGAACTTGATTCTAAAAATA+TGG + chr3_1:63675858-63675877 Msa0367780:intron 20.0%
!! TAGAAATGTTGAATTGAAAA+GGG - chr3_1:63676050-63676069 None:intergenic 20.0%
!! TTAGAAATGTTGAATTGAAA+AGG - chr3_1:63676051-63676070 None:intergenic 20.0%
!!! AAATACTTCTTTGAAAACAA+AGG - chr3_1:63676414-63676433 None:intergenic 20.0%
!! AGCAAAAATTATACAATGAA+AGG - chr3_1:63676477-63676496 None:intergenic 20.0%
!!! AATTTTCTTTGTACTTCAAT+AGG + chr3_1:63676897-63676916 Msa0367780:intron 20.0%
!! ATTCGAAATTTCCATTTATT+AGG + chr3_1:63677040-63677059 Msa0367780:intron 20.0%
!! ACAAGGAAATTAATTAATGA+AGG + chr3_1:63677075-63677094 Msa0367780:intron 20.0%
!!! ATTGTTTTGTTTATGGTTTA+TGG - chr3_1:63677241-63677260 None:intergenic 20.0%
!! TAATTGTGAATAAGATGAAA+TGG - chr3_1:63677808-63677827 None:intergenic 20.0%
!! AATACAAAAAGAAAACTTCT+GGG - chr3_1:63678452-63678471 None:intergenic 20.0%
!! AAATACAAAAAGAAAACTTC+TGG - chr3_1:63678453-63678472 None:intergenic 20.0%
!!! AATTTTATCTTTTGCAACAT+GGG - chr3_1:63678916-63678935 None:intergenic 20.0%
!!! AAATTTTATCTTTTGCAACA+TGG - chr3_1:63678917-63678936 None:intergenic 20.0%
!! GCGTAAAAAAAACAAAAAAA+CGG - chr3_1:63678951-63678970 None:intergenic 20.0%
!! GTGGATCTTATATAAAATTT+AGG + chr3_1:63679077-63679096 Msa0367780:three_prime_UTR 20.0%
!!! TTTTTATTTTTAATCGGTGG+AGG - chr3_1:63674339-63674358 None:intergenic 25.0%
!!! TTTTTTTCAATCAATGAACG+AGG + chr3_1:63674494-63674513 Msa0367780:five_prime_UTR 25.0%
! TTCTCAGGAAAAACAATTAA+GGG - chr3_1:63674767-63674786 None:intergenic 25.0%
! TTTCTCAGGAAAAACAATTA+AGG - chr3_1:63674768-63674787 None:intergenic 25.0%
! TTTATAGAACACTTAGATTG+TGG + chr3_1:63674916-63674935 Msa0367780:intron 25.0%
! TTGGTCCTTAAAAAAGTAAA+TGG + chr3_1:63675111-63675130 Msa0367780:intron 25.0%
!!! AGGAACCATTTACTTTTTTA+AGG - chr3_1:63675119-63675138 None:intergenic 25.0%
! TCAAATGTTGGGTATATTTA+AGG - chr3_1:63675139-63675158 None:intergenic 25.0%
! GATGACTAAAATCAAATGTT+GGG - chr3_1:63675150-63675169 None:intergenic 25.0%
! ATTTCATGGATGAAAAATGT+TGG - chr3_1:63675202-63675221 None:intergenic 25.0%
! GGAGAACTAAAATCAAATAA+TGG + chr3_1:63675462-63675481 Msa0367780:intron 25.0%
!!! TCTCATATGTCTTTTTTTGT+TGG - chr3_1:63675675-63675694 None:intergenic 25.0%
!! TCAATTTTGCAATTTCCAAA+AGG - chr3_1:63675798-63675817 None:intergenic 25.0%
! TGGAAATTGCAAAATTGATT+TGG + chr3_1:63675800-63675819 Msa0367780:intron 25.0%
!! TAAAAAATAATCCCTGCTTT+TGG + chr3_1:63675947-63675966 Msa0367780:intron 25.0%
! TTCACTTAGAAAAAGTTTGA+AGG + chr3_1:63676377-63676396 Msa0367780:intron 25.0%
! TCACTTAGAAAAAGTTTGAA+GGG + chr3_1:63676378-63676397 Msa0367780:intron 25.0%
! TAAATGATTTCTGTTCTAGT+AGG + chr3_1:63676577-63676596 Msa0367780:intron 25.0%
! AGCTATACTTTCCTAATAAA+TGG - chr3_1:63677054-63677073 None:intergenic 25.0%
!!! TCTTAGCATTGTTTTGTTTA+TGG - chr3_1:63677248-63677267 None:intergenic 25.0%
!! AAACAATGCTAAGATTTTGA+TGG + chr3_1:63677254-63677273 Msa0367780:intron 25.0%
! CTTAACTTAGATATCCTATA+GGG - chr3_1:63677280-63677299 None:intergenic 25.0%
! ACTTAACTTAGATATCCTAT+AGG - chr3_1:63677281-63677300 None:intergenic 25.0%
!! AGTGTAGATAAAACTGATTT+GGG - chr3_1:63677596-63677615 None:intergenic 25.0%
! AAGTGTAGATAAAACTGATT+TGG - chr3_1:63677597-63677616 None:intergenic 25.0%
!!! AAATCAGTTTTATCTACACT+TGG + chr3_1:63677596-63677615 Msa0367780:CDS 25.0%
!! TGAATAAGATGAAATGGATT+AGG - chr3_1:63677802-63677821 None:intergenic 25.0%
!! GTCAAACTCTTAAACTTTTT+GGG + chr3_1:63677948-63677967 Msa0367780:CDS 25.0%
! TCTTACTCTTAATTGAGATA+TGG - chr3_1:63678112-63678131 None:intergenic 25.0%
! AAAGGGAAAAATATAGTGAA+AGG - chr3_1:63678248-63678267 None:intergenic 25.0%
!! ACAACTAGTCTATCTAAAAA+GGG - chr3_1:63678265-63678284 None:intergenic 25.0%
! ATACAAAAAGAAAACTTCTG+GGG - chr3_1:63678451-63678470 None:intergenic 25.0%
!!! TTTTTGTTTCACAACTCTTT+AGG + chr3_1:63678504-63678523 Msa0367780:three_prime_UTR 25.0%
! TGAAATGTGTTAAATGAGTT+TGG + chr3_1:63678578-63678597 Msa0367780:three_prime_UTR 25.0%
!! TAACATGGTAATGTAGAAAT+TGG - chr3_1:63678739-63678758 None:intergenic 25.0%
TTACAAACTATCTCATAGTC+TGG + chr3_1:63674557-63674576 Msa0367780:five_prime_UTR 30.0%
! TTCTATCTCCTTTTCTTACA+TGG + chr3_1:63674662-63674681 Msa0367780:five_prime_UTR 30.0%
ATGAGAAACCATGTAAGAAA+AGG - chr3_1:63674673-63674692 None:intergenic 30.0%
GGATGACTAAAATCAAATGT+TGG - chr3_1:63675151-63675170 None:intergenic 30.0%
GTTAGACTGACTAAAAAGTA+TGG - chr3_1:63675229-63675248 None:intergenic 30.0%
! AAAAGCCTGAGGAATATTTT+AGG + chr3_1:63675441-63675460 Msa0367780:intron 30.0%
!! TATAGGTGTAGTTTTTAGGA+TGG - chr3_1:63675561-63675580 None:intergenic 30.0%
! TGTCTATAGGTGTAGTTTTT+AGG - chr3_1:63675565-63675584 None:intergenic 30.0%
!!! GTATTTTTTGTTCCACCTTT+TGG + chr3_1:63675780-63675799 Msa0367780:intron 30.0%
! ATTTTGCAATTTCCAAAAGG+TGG - chr3_1:63675795-63675814 None:intergenic 30.0%
!! TTTTGGTACTGAAATGGATA+TGG + chr3_1:63675964-63675983 Msa0367780:intron 30.0%
ATTAAACACACTTTCTATGC+GGG - chr3_1:63676143-63676162 None:intergenic 30.0%
CATTAAACACACTTTCTATG+CGG - chr3_1:63676144-63676163 None:intergenic 30.0%
! TAGAAGCTTTGGTACATAAT+AGG - chr3_1:63676206-63676225 None:intergenic 30.0%
TATAGCTAAACTCTCATCAT+TGG + chr3_1:63676224-63676243 Msa0367780:intron 30.0%
ATAGCTAAACTCTCATCATT+GGG + chr3_1:63676225-63676244 Msa0367780:intron 30.0%
ACTTAACATAGGCTTAGAAA+TGG + chr3_1:63676302-63676321 Msa0367780:intron 30.0%
! AAGTACTGCATATTGTTTGA+GGG - chr3_1:63676448-63676467 None:intergenic 30.0%
! TAAGTACTGCATATTGTTTG+AGG - chr3_1:63676449-63676468 None:intergenic 30.0%
TCAAACAATATGCAGTACTT+AGG + chr3_1:63676448-63676467 Msa0367780:intron 30.0%
CAAACAATATGCAGTACTTA+GGG + chr3_1:63676449-63676468 Msa0367780:intron 30.0%
ACATCATACATGTATTCATG+TGG + chr3_1:63676513-63676532 Msa0367780:intron 30.0%
TTCAAAATGTAGGATCAAGA+TGG + chr3_1:63676677-63676696 Msa0367780:intron 30.0%
CTCTGTTTCGATATAGTATA+TGG - chr3_1:63676931-63676950 None:intergenic 30.0%
! TTAGGAAAGTATAGCTAACA+AGG + chr3_1:63677058-63677077 Msa0367780:intron 30.0%
!!! TGCTCAGAAGTTTTTTTCTA+AGG + chr3_1:63677190-63677209 Msa0367780:CDS 30.0%
! TGCAACTTATTTGAGATAGA+AGG + chr3_1:63677308-63677327 Msa0367780:intron 30.0%
! GCAACTTATTTGAGATAGAA+GGG + chr3_1:63677309-63677328 Msa0367780:intron 30.0%
! AGGAATTTCAATTGATTCCT+TGG - chr3_1:63677429-63677448 None:intergenic 30.0%
AGAAATTTCAATCCCGAAAA+AGG + chr3_1:63677517-63677536 Msa0367780:CDS 30.0%
! TTAGAGTTCATTGCCTTTTT+CGG - chr3_1:63677533-63677552 None:intergenic 30.0%
!! ATAAAACTGATTTGGGAGAT+TGG - chr3_1:63677589-63677608 None:intergenic 30.0%
TGGACACAACTAATCAATAT+CGG - chr3_1:63677674-63677693 None:intergenic 30.0%
! CGTCAAACTCTTAAACTTTT+TGG + chr3_1:63677947-63677966 Msa0367780:CDS 30.0%
TCTAACATGTATGTCATGAT+TGG - chr3_1:63678034-63678053 None:intergenic 30.0%
TCATGACATACATGTTAGAA+AGG + chr3_1:63678035-63678054 Msa0367780:CDS 30.0%
CATGACATACATGTTAGAAA+GGG + chr3_1:63678036-63678055 Msa0367780:CDS 30.0%
! TTTGACATGCACCTTTTATA+TGG - chr3_1:63678168-63678187 None:intergenic 30.0%
! GACAACTAGTCTATCTAAAA+AGG - chr3_1:63678266-63678285 None:intergenic 30.0%
TTTCGTAACTCTTGATATCA+CGG + chr3_1:63678288-63678307 Msa0367780:three_prime_UTR 30.0%
!!! TACTCATGTTTTTGGAATGT+CGG - chr3_1:63678658-63678677 None:intergenic 30.0%
! TCTCATGTTACTCATGTTTT+TGG - chr3_1:63678666-63678685 None:intergenic 30.0%
ATTACCATGTTAAATGTGTG+TGG + chr3_1:63678747-63678766 Msa0367780:three_prime_UTR 30.0%
! CGTTACTTGAACTAACTTTT+AGG - chr3_1:63678780-63678799 None:intergenic 30.0%
AAAAGTTAGTTCAAGTAACG+AGG + chr3_1:63678780-63678799 Msa0367780:three_prime_UTR 30.0%
AAAGTTAGTTCAAGTAACGA+GGG + chr3_1:63678781-63678800 Msa0367780:three_prime_UTR 30.0%
TACTTAGATTAACAGACTGT+TGG - chr3_1:63678828-63678847 None:intergenic 30.0%
GTCTGTTAATCTAAGTAATG+TGG + chr3_1:63678831-63678850 Msa0367780:three_prime_UTR 30.0%
TATTCTCACATTTACCATGA+TGG + chr3_1:63679030-63679049 Msa0367780:three_prime_UTR 30.0%
GAGAAGTTGAATGAATCTTG+TGG - chr3_1:63674413-63674432 None:intergenic 35.0%
!!! TGTTATTTTTATCTCCGACG+TGG - chr3_1:63674443-63674462 None:intergenic 35.0%
! TGAGATAGTTTGTAACAGTG+AGG - chr3_1:63674552-63674571 None:intergenic 35.0%
CTTACATGGTTTCTCATTAG+AGG + chr3_1:63674676-63674695 Msa0367780:five_prime_UTR 35.0%
CAACAACGTTGACAATTCAT+CGG + chr3_1:63674718-63674737 Msa0367780:five_prime_UTR 35.0%
! TGTTTTTCCTGAGAAACCAA+AGG + chr3_1:63674772-63674791 Msa0367780:five_prime_UTR 35.0%
GTTCTCCTAAAATATTCCTC+AGG - chr3_1:63675449-63675468 None:intergenic 35.0%
TTAGCGGCACAATTTCTTTA+GGG - chr3_1:63675517-63675536 None:intergenic 35.0%
ACACCTATAGACATAGACAT+AGG + chr3_1:63675572-63675591 Msa0367780:intron 35.0%
TCTCCTATGTCTATGTCTAT+AGG - chr3_1:63675578-63675597 None:intergenic 35.0%
ATAGGAGATCTTGTCTTTGT+GGG + chr3_1:63675590-63675609 Msa0367780:intron 35.0%
GACAGTGCATAATATATGCA+AGG + chr3_1:63675630-63675649 Msa0367780:intron 35.0%
CATAATATATGCAAGGTTCG+AGG + chr3_1:63675637-63675656 Msa0367780:intron 35.0%
GAGTTTAGCTATAGAAGCTT+TGG - chr3_1:63676217-63676236 None:intergenic 35.0%
TAGCTAAACTCTCATCATTG+GGG + chr3_1:63676226-63676245 Msa0367780:intron 35.0%
AGTACTGCATATTGTTTGAG+GGG - chr3_1:63676447-63676466 None:intergenic 35.0%
TCATACATGTATTCATGTGG+AGG + chr3_1:63676516-63676535 Msa0367780:intron 35.0%
CATACATGTATTCATGTGGA+GGG + chr3_1:63676517-63676536 Msa0367780:intron 35.0%
TACAGAGATGAATGATTCCT+TGG + chr3_1:63676550-63676569 Msa0367780:intron 35.0%
CAGAAATCATTTATCCACCA+AGG - chr3_1:63676570-63676589 None:intergenic 35.0%
! CTGAGTTGAATATGAGTAAC+AGG - chr3_1:63676755-63676774 None:intergenic 35.0%
TATGCTCTTAAGGTTCTCTA+TGG + chr3_1:63676800-63676819 Msa0367780:intron 35.0%
TCTTTGTACTTCAATAGGCA+AGG + chr3_1:63676902-63676921 Msa0367780:intron 35.0%
TATCGAAACAGAGAGAAAGA+TGG + chr3_1:63676938-63676957 Msa0367780:CDS 35.0%
ATATGTCAGTTCAAAGACTG+CGG + chr3_1:63677151-63677170 Msa0367780:CDS 35.0%
!! TAAGATTTTGATGGCCCTAT+AGG + chr3_1:63677263-63677282 Msa0367780:intron 35.0%
CCTGATATGGAATCAAACAA+AGG - chr3_1:63677373-63677392 None:intergenic 35.0%
! CCTTTGTTTGATTCCATATC+AGG + chr3_1:63677370-63677389 Msa0367780:intron 35.0%
! TAGAGTTCATTGCCTTTTTC+GGG - chr3_1:63677532-63677551 None:intergenic 35.0%
! ACCATCTTTTCCAACAATTG+AGG + chr3_1:63678000-63678019 Msa0367780:CDS 35.0%
CTCAATTAAGAGTAAGAGTG+AGG + chr3_1:63678115-63678134 Msa0367780:exon 35.0%
AAGGGTTTGTGCCATATAAA+AGG + chr3_1:63678154-63678173 Msa0367780:three_prime_UTR 35.0%
ATGAGCTGGTAACATGAAAA+AGG + chr3_1:63678358-63678377 Msa0367780:three_prime_UTR 35.0%
TGAGCTGGTAACATGAAAAA+GGG + chr3_1:63678359-63678378 Msa0367780:three_prime_UTR 35.0%
!! ACAACCTTTGAGTTAGCTTT+GGG - chr3_1:63678611-63678630 None:intergenic 35.0%
AAAGCTAACTCAAAGGTTGT+GGG + chr3_1:63678611-63678630 Msa0367780:three_prime_UTR 35.0%
GAATGTCGGATGTATATATG+CGG - chr3_1:63678644-63678663 None:intergenic 35.0%
AGATCCACACACATTTAACA+TGG - chr3_1:63678754-63678773 None:intergenic 35.0%
GTTGGATGTATATATGTGGT+TGG - chr3_1:63678810-63678829 None:intergenic 35.0%
GACTGTTGGATGTATATATG+TGG - chr3_1:63678814-63678833 None:intergenic 35.0%
!! TGTTGGTAGTAATTCCATCA+TGG - chr3_1:63679047-63679066 None:intergenic 35.0%
TGATGGAATTACTACCAACA+AGG + chr3_1:63679047-63679066 Msa0367780:three_prime_UTR 35.0%
ACACATGTTCATGACAACCT+TGG + chr3_1:63674380-63674399 Msa0367780:five_prime_UTR 40.0%
! AACTTTGCCTTTGGTTTCTC+AGG - chr3_1:63674782-63674801 None:intergenic 40.0%
GAAACCAAAGGCAAAGTTGA+AGG + chr3_1:63674784-63674803 Msa0367780:five_prime_UTR 40.0%
ATCAGTGATTTCTGCAGCTA+TGG + chr3_1:63674815-63674834 Msa0367780:exon 40.0%
TTAGAGGAATCAAAAGCCTG+AGG + chr3_1:63675430-63675449 Msa0367780:intron 40.0%
GTTAGCGGCACAATTTCTTT+AGG - chr3_1:63675518-63675537 None:intergenic 40.0%
CATAGGAGATCTTGTCTTTG+TGG + chr3_1:63675589-63675608 Msa0367780:intron 40.0%
!!! ATGTCTTTTTTTGTTGGCCG+AGG - chr3_1:63675669-63675688 None:intergenic 40.0%
AAGCTTGTACAACTTGTAGC+TGG + chr3_1:63675723-63675742 Msa0367780:intron 40.0%
CCATTTCAGTACCAAAAGCA+GGG - chr3_1:63675961-63675980 None:intergenic 40.0%
TCCATTTCAGTACCAAAAGC+AGG - chr3_1:63675962-63675981 None:intergenic 40.0%
GTGAATAGTACTTGTGGAGT+AGG - chr3_1:63676174-63676193 None:intergenic 40.0%
CTCCACAAGTACTATTCACT+TGG + chr3_1:63676175-63676194 Msa0367780:intron 40.0%
CTCCAAGTGAATAGTACTTG+TGG - chr3_1:63676180-63676199 None:intergenic 40.0%
CACAAGTACTATTCACTTGG+AGG + chr3_1:63676178-63676197 Msa0367780:intron 40.0%
AGCTAAACTCTCATCATTGG+GGG + chr3_1:63676227-63676246 Msa0367780:intron 40.0%
AGAGATGAATGATTCCTTGG+TGG + chr3_1:63676553-63676572 Msa0367780:intron 40.0%
TCTGTTCTAGTAGGCTCTTA+AGG + chr3_1:63676586-63676605 Msa0367780:intron 40.0%
CGCGAATGATTATGCTCTTA+AGG + chr3_1:63676790-63676809 Msa0367780:CDS 40.0%
!! CATACAGCTTTAAGGCTTCA+AGG - chr3_1:63676987-63677006 None:intergenic 40.0%
CTTGAAGCCTTAAAGCTGTA+TGG + chr3_1:63676985-63677004 Msa0367780:CDS 40.0%
! TGAAGGAGTATGATTGTGCT+TGG + chr3_1:63677092-63677111 Msa0367780:intron 40.0%
TGCAAGCATTACAAACACCA+AGG + chr3_1:63677409-63677428 Msa0367780:CDS 40.0%
!! ATAGGCTTACGTTTTGGTCT+AGG - chr3_1:63677455-63677474 None:intergenic 40.0%
TATCTGAATCGGATGAACCA+AGG - chr3_1:63677631-63677650 None:intergenic 40.0%
TCCGATTCAGATACACCAAA+CGG + chr3_1:63677638-63677657 Msa0367780:CDS 40.0%
!! TCCGTTTGGTGTATCTGAAT+CGG - chr3_1:63677642-63677661 None:intergenic 40.0%
ATCGGAGATAAACTTCCGTT+TGG - chr3_1:63677656-63677675 None:intergenic 40.0%
TGAATTCAAAACGCCATCAG+AGG + chr3_1:63677715-63677734 Msa0367780:CDS 40.0%
TCATGATGAGAAACCTCTTC+TGG + chr3_1:63677766-63677785 Msa0367780:CDS 40.0%
AGGAAGTTAGTTACCAGAAG+AGG - chr3_1:63677782-63677801 None:intergenic 40.0%
CTAGCGATAATATCAAGTGC+AGG - chr3_1:63677864-63677883 None:intergenic 40.0%
GCCTCAATTGTTGGAAAAGA+TGG - chr3_1:63678004-63678023 None:intergenic 40.0%
GGTTTACATGCCTCAATTGT+TGG - chr3_1:63678013-63678032 None:intergenic 40.0%
GACATACATGTTAGAAAGGG+AGG + chr3_1:63678039-63678058 Msa0367780:CDS 40.0%
ATACATGTTAGAAAGGGAGG+AGG + chr3_1:63678042-63678061 Msa0367780:CDS 40.0%
TAGAAAGGGAGGAGGAAAAT+TGG + chr3_1:63678050-63678069 Msa0367780:CDS 40.0%
GGAGGAAAATTGGAACTTCT+TGG + chr3_1:63678060-63678079 Msa0367780:CDS 40.0%
CACAGCTGTAGCTTATGTAT+AGG - chr3_1:63678334-63678353 None:intergenic 40.0%
CTATACATAAGCTACAGCTG+TGG + chr3_1:63678332-63678351 Msa0367780:three_prime_UTR 40.0%
AAAAAGGGAGGCAGAAGAAT+GGG + chr3_1:63678374-63678393 Msa0367780:three_prime_UTR 40.0%
ACAATTCACAGCTGAAAGTG+GGG - chr3_1:63678478-63678497 None:intergenic 40.0%
GACAATTCACAGCTGAAAGT+GGG - chr3_1:63678479-63678498 None:intergenic 40.0%
AGACAATTCACAGCTGAAAG+TGG - chr3_1:63678480-63678499 None:intergenic 40.0%
TCATCCCAAAGCTAACTCAA+AGG + chr3_1:63678604-63678623 Msa0367780:three_prime_UTR 40.0%
! CACAACCTTTGAGTTAGCTT+TGG - chr3_1:63678612-63678631 None:intergenic 40.0%
CAAAGCTAACTCAAAGGTTG+TGG + chr3_1:63678610-63678629 Msa0367780:three_prime_UTR 40.0%
TCGGATGTATATATGCGGTT+GGG - chr3_1:63678639-63678658 None:intergenic 40.0%
!! CTACCAACAAGGTCTTATTG+TGG + chr3_1:63679058-63679077 Msa0367780:three_prime_UTR 40.0%
GATCCACAATAAGACCTTGT+TGG - chr3_1:63679064-63679083 None:intergenic 40.0%
ACTTCTCCACATTTCCACGT+CGG + chr3_1:63674426-63674445 Msa0367780:five_prime_UTR 45.0%
TTATCTCCGACGTGGAAATG+TGG - chr3_1:63674435-63674454 None:intergenic 45.0%
! CATCGGTAGCTTTTGTGTTG+TGG + chr3_1:63674735-63674754 Msa0367780:five_prime_UTR 45.0%
GTCTCCTTCAACTTTGCCTT+TGG - chr3_1:63674791-63674810 None:intergenic 45.0%
GCTGCAGAAATCACTGATCA+AGG - chr3_1:63674813-63674832 None:intergenic 45.0%
! CTTTGTGGGTTTAGCTCAGT+TGG + chr3_1:63675604-63675623 Msa0367780:intron 45.0%
AAGGTTCGAGGTTGAAACCT+CGG + chr3_1:63675649-63675668 Msa0367780:intron 45.0%
!! CCCTGCTTTTGGTACTGAAA+TGG + chr3_1:63675958-63675977 Msa0367780:intron 45.0%
! TAAGTGCGTGTTGGGTTTTG+CGG - chr3_1:63676287-63676306 None:intergenic 45.0%
ACCCAACACGCACTTAACAT+AGG + chr3_1:63676291-63676310 Msa0367780:intron 45.0%
GCCTATGTTAAGTGCGTGTT+GGG - chr3_1:63676295-63676314 None:intergenic 45.0%
AGCCTATGTTAAGTGCGTGT+TGG - chr3_1:63676296-63676315 None:intergenic 45.0%
CAGCTACATTTCCTACTGCA+GGG - chr3_1:63676724-63676743 None:intergenic 45.0%
AAGCCTTAAAGCTGTATGGC+CGG + chr3_1:63676989-63677008 Msa0367780:CDS 45.0%
TCTGAGCATGACTTCGAATC+TGG - chr3_1:63677178-63677197 None:intergenic 45.0%
!! TTACGTTTTGGTCTAGGAGG+AGG - chr3_1:63677449-63677468 None:intergenic 45.0%
! CAACTAGCTTGCGAGGATAA+GGG - chr3_1:63677481-63677500 None:intergenic 45.0%
! TCAACTAGCTTGCGAGGATA+AGG - chr3_1:63677482-63677501 None:intergenic 45.0%
ATCGGATGAACCAAGGCTTT+CGG - chr3_1:63677624-63677643 None:intergenic 45.0%
CAGGTCTGAAAACACTTGCT+TGG - chr3_1:63677694-63677713 None:intergenic 45.0%
!! GATGGCGTTTTGAATTCAGC+AGG - chr3_1:63677713-63677732 None:intergenic 45.0%
CAGCTGTTGCAGATGAAGAT+TGG - chr3_1:63678200-63678219 None:intergenic 45.0%
TACATAAGCTACAGCTGTGG+TGG + chr3_1:63678335-63678354 Msa0367780:three_prime_UTR 45.0%
GCTGGTAACATGAAAAAGGG+AGG + chr3_1:63678362-63678381 Msa0367780:three_prime_UTR 45.0%
GAAAAAGGGAGGCAGAAGAA+TGG + chr3_1:63678373-63678392 Msa0367780:three_prime_UTR 45.0%
AATTCACAGCTGAAAGTGGG+GGG - chr3_1:63678476-63678495 None:intergenic 45.0%
CAATTCACAGCTGAAAGTGG+GGG - chr3_1:63678477-63678496 None:intergenic 45.0%
GTCGGATGTATATATGCGGT+TGG - chr3_1:63678640-63678659 None:intergenic 45.0%
TCACGTCTAGTGTGAGTCTT+GGG + chr3_1:63678712-63678731 Msa0367780:three_prime_UTR 45.0%
!!! TTGTTAAAAATTATAATTTT+TGG + chr3_1:63675388-63675407 Msa0367780:intron 5.0%
AATCTTGTGGCTCACGTCCA+AGG - chr3_1:63674400-63674419 None:intergenic 50.0%
! GTGGGTTTAGCTCAGTTGGT+AGG + chr3_1:63675608-63675627 Msa0367780:intron 50.0%
CCAGCTACATTTCCTACTGC+AGG - chr3_1:63676725-63676744 None:intergenic 50.0%
CCTGCAGTAGGAAATGTAGC+TGG + chr3_1:63676722-63676741 Msa0367780:CDS 50.0%
AGCCTTAAAGCTGTATGGCC+GGG + chr3_1:63676990-63677009 Msa0367780:CDS 50.0%
GTGTCGCGAAGAACCTGATA+TGG - chr3_1:63677386-63677405 None:intergenic 50.0%
!! GGCTTACGTTTTGGTCTAGG+AGG - chr3_1:63677452-63677471 None:intergenic 50.0%
! GGGTGCATAGGCTTACGTTT+TGG - chr3_1:63677461-63677480 None:intergenic 50.0%
! TTGCGAGGATAAGGGTGCAT+AGG - chr3_1:63677473-63677492 None:intergenic 50.0%
TCCTCGCAAGCTAGTTGAGA+TGG + chr3_1:63677484-63677503 Msa0367780:CDS 50.0%
! ACCATCTCAACTAGCTTGCG+AGG - chr3_1:63677488-63677507 None:intergenic 50.0%
CGCAAGCTAGTTGAGATGGT+CGG + chr3_1:63677488-63677507 Msa0367780:CDS 50.0%
ACACTTGGTTCCGAAAGCCT+TGG + chr3_1:63677611-63677630 Msa0367780:CDS 50.0%
AGCCTAGCTTCTTCCTCTGA+TGG - chr3_1:63677731-63677750 None:intergenic 50.0%
AGAGTGAGGCACGAAACTTG+TGG + chr3_1:63678129-63678148 Msa0367780:three_prime_UTR 50.0%
GAGTGAGGCACGAAACTTGT+GGG + chr3_1:63678130-63678149 Msa0367780:three_prime_UTR 50.0%
AGGCACGAAACTTGTGGGAA+AGG + chr3_1:63678135-63678154 Msa0367780:three_prime_UTR 50.0%
GGCACGAAACTTGTGGGAAA+GGG + chr3_1:63678136-63678155 Msa0367780:three_prime_UTR 50.0%
CTCACACTAGACGTGACAGT+GGG - chr3_1:63678708-63678727 None:intergenic 50.0%
ACTCACACTAGACGTGACAG+TGG - chr3_1:63678709-63678728 None:intergenic 50.0%
GTCACGTCTAGTGTGAGTCT+TGG + chr3_1:63678711-63678730 Msa0367780:three_prime_UTR 50.0%
TAGGCACTAGGCGTAAGAGT+AGG - chr3_1:63678878-63678897 None:intergenic 50.0%
TTACGCCTAGTGCCTATCGT+GGG + chr3_1:63678882-63678901 Msa0367780:three_prime_UTR 50.0%
TGGGAATTGAACCCCACGAT+AGG - chr3_1:63678897-63678916 None:intergenic 50.0%
TCCAGTGTTAGCCCTGCAGT+AGG + chr3_1:63676710-63676729 Msa0367780:CDS 55.0%
TCCTACTGCAGGGCTAACAC+TGG - chr3_1:63676714-63676733 None:intergenic 55.0%
CATACCTTCAATGCGTCGCC+AGG - chr3_1:63677016-63677035 None:intergenic 55.0%
CTGGCGACGCATTGAAGGTA+TGG + chr3_1:63677014-63677033 Msa0367780:intron 55.0%
CGCCATCAGAGGAAGAAGCT+AGG + chr3_1:63677726-63677745 Msa0367780:CDS 55.0%
!! TACAGCTGTGGTGGATGAGC+TGG + chr3_1:63678344-63678363 Msa0367780:three_prime_UTR 55.0%
CTTACGCCTAGTGCCTATCG+TGG + chr3_1:63678881-63678900 Msa0367780:three_prime_UTR 55.0%
TACGCCTAGTGCCTATCGTG+GGG + chr3_1:63678883-63678902 Msa0367780:three_prime_UTR 55.0%
TGAACCCCACGATAGGCACT+AGG - chr3_1:63678890-63678909 None:intergenic 55.0%
GGCCCGGCCATACAGCTTTA+AGG - chr3_1:63676995-63677014 None:intergenic 60.0%
TAAAGCTGTATGGCCGGGCC+TGG + chr3_1:63676995-63677014 Msa0367780:CDS 60.0%
CTTCAATGCGTCGCCAGGCC+CGG - chr3_1:63677011-63677030 None:intergenic 65.0%
CGGGCCTGGCGACGCATTGA+AGG + chr3_1:63677009-63677028 Msa0367780:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 63674323 63679136 63674323 ID=Msa0367780;Name=Msa0367780
chr3_1 mRNA 63674323 63679136 63674323 ID=Msa0367780-mRNA-1;Parent=Msa0367780;Name=Msa0367780-mRNA-1;_AED=0.19;_eAED=0.19;_QI=511|1|1|1|1|1|6|1013|314
chr3_1 exon 63674323 63674845 63674323 ID=Msa0367780-mRNA-1:exon:12562;Parent=Msa0367780-mRNA-1
chr3_1 exon 63676689 63676811 63676689 ID=Msa0367780-mRNA-1:exon:12563;Parent=Msa0367780-mRNA-1
chr3_1 exon 63676919 63677030 63676919 ID=Msa0367780-mRNA-1:exon:12564;Parent=Msa0367780-mRNA-1
chr3_1 exon 63677150 63677211 63677150 ID=Msa0367780-mRNA-1:exon:12565;Parent=Msa0367780-mRNA-1
chr3_1 exon 63677392 63677787 63677392 ID=Msa0367780-mRNA-1:exon:12566;Parent=Msa0367780-mRNA-1
chr3_1 exon 63677884 63679136 63677884 ID=Msa0367780-mRNA-1:exon:12567;Parent=Msa0367780-mRNA-1
chr3_1 five_prime_UTR 63674323 63674833 63674323 ID=Msa0367780-mRNA-1:five_prime_utr;Parent=Msa0367780-mRNA-1
chr3_1 CDS 63674834 63674845 63674834 ID=Msa0367780-mRNA-1:cds;Parent=Msa0367780-mRNA-1
chr3_1 CDS 63676689 63676811 63676689 ID=Msa0367780-mRNA-1:cds;Parent=Msa0367780-mRNA-1
chr3_1 CDS 63676919 63677030 63676919 ID=Msa0367780-mRNA-1:cds;Parent=Msa0367780-mRNA-1
chr3_1 CDS 63677150 63677211 63677150 ID=Msa0367780-mRNA-1:cds;Parent=Msa0367780-mRNA-1
chr3_1 CDS 63677392 63677787 63677392 ID=Msa0367780-mRNA-1:cds;Parent=Msa0367780-mRNA-1
chr3_1 CDS 63677884 63678123 63677884 ID=Msa0367780-mRNA-1:cds;Parent=Msa0367780-mRNA-1
chr3_1 three_prime_UTR 63678124 63679136 63678124 ID=Msa0367780-mRNA-1:three_prime_utr;Parent=Msa0367780-mRNA-1
Gene Sequence

>Msa0367780

ATGGCGAATCAAGATCAAGATGGATTAACTTGCTCCAGTGTTAGCCCTGCAGTAGGAAATGTAGCTGGATCGCATCCTGTTACTCATATTCAACTCAGCGATCAGTTATCTTGCGCGAATGATTATGCTCTTAAGGCAAGGAAACCATATACTATATCGAAACAGAGAGAAAGATGGACAGATGAAGAACATAAGAAGTTCCTTGAAGCCTTAAAGCTGTATGGCCGGGCCTGGCGACGCATTGAAGAATATGTCAGTTCAAAGACTGCGGTCCAGATTCGAAGTCATGCTCAGAAGTTTTTTTCTAAGGTTCTTCGCGACACGAGTGCAAGCATTACAAACACCAAGGAATCAATTGAAATTCCTCCTCCTAGACCAAAACGTAAGCCTATGCACCCTTATCCTCGCAAGCTAGTTGAGATGGTCGGTAGTAAAGAAATTTCAATCCCGAAAAAGGCAATGAACTCTAATTCTCTGAAGACATCAGATTTTGATCAAGCAAACCAATCTCCCAAATCAGTTTTATCTACACTTGGTTCCGAAAGCCTTGGTTCATCCGATTCAGATACACCAAACGGAAGTTTATCTCCGATATTGATTAGTTGTGTCCAAGCAAGTGTTTTCAGACCTGCTGAATTCAAAACGCCATCAGAGGAAGAAGCTAGGCTAGATGCTGACTCAGCTCATGATGAGAAACCTCTTCTGAAACTCGAGATTCTCTCTGATGAAAGTGTTTCTGCAAAAGAAAGCATAGCAGAAGAATCGTCTCGTCAAACTCTTAAACTTTTTGGGACGACTCTATTTATAAAAGATTTCTGCAAACCATCTTTTCCAACAATTGAGGCATGTAAACCAATCATGACATACATGTTAGAAAGGGAGGAGGAAAATTGGAACTTCTTGGAAAAAGTACACTATGCAAAACATCAGCCATATCTCAATTAA
Protein sequence

>Msa0367780

MANQDQDGLTCSSVSPAVGNVAGSHPVTHIQLSDQLSCANDYALKARKPYTISKQRERWTDEEHKKFLEALKLYGRAWRRIEEYVSSKTAVQIRSHAQKFFSKVLRDTSASITNTKESIEIPPPRPKRKPMHPYPRKLVEMVGSKEISIPKKAMNSNSLKTSDFDQANQSPKSVLSTLGSESLGSSDSDTPNGSLSPILISCVQASVFRPAEFKTPSEEEARLDADSAHDEKPLLKLEILSDESVSAKESIAEESSRQTLKLFGTTLFIKDFCKPSFPTIEACKPIMTYMLEREEENWNFLEKVHYAKHQPYLN*