Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0460680 | XP_039687304.1 | 93.728 | 287 | 17 | 1 | 1 | 286 | 1 | 287 | 0.0 | 522 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0460680 | sp|F4KGY6|RVE1_ARATH | 50.562 | 267 | 95 | 5 | 15 | 271 | 4 | 243 | 3.21e-57 | 192 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0460680 | G7J7Y9 | 92.683 | 287 | 20 | 1 | 1 | 286 | 2 | 288 | 0.0 | 515 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0460680 | TF | MYB-related |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0025090 | Msa0460680 | 0.805871 | 1.082843e-49 | -8.615850e-47 |
| Msa0049670 | Msa0460680 | 0.800983 | 1.115588e-48 | -8.615850e-47 |
| Msa0072590 | Msa0460680 | 0.805927 | 1.053837e-49 | -8.615850e-47 |
| Msa0198140 | Msa0460680 | 0.810134 | 1.340774e-50 | -8.615850e-47 |
| Msa0198220 | Msa0460680 | 0.804927 | 1.707978e-49 | -8.615850e-47 |
| Msa0223500 | Msa0460680 | 0.820702 | 5.964037e-53 | -8.615850e-47 |
| Msa0367780 | Msa0460680 | 0.824594 | 7.416449e-54 | -8.615850e-47 |
| Msa0378620 | Msa0460680 | 0.802293 | 6.009547e-49 | -8.615850e-47 |
| Msa0382670 | Msa0460680 | -0.803182 | 3.938306e-49 | -8.615850e-47 |
| Msa0404210 | Msa0460680 | 0.811881 | 5.607870e-51 | -8.615850e-47 |
| Msa0460680 | Msa0475390 | 0.808330 | 3.265581e-50 | -8.615850e-47 |
| Msa0460680 | Msa0483160 | 0.831692 | 1.445083e-55 | -8.615850e-47 |
| Msa0460680 | Msa0502900 | 0.823398 | 1.415367e-53 | -8.615850e-47 |
| Msa0460680 | Msa0578890 | 0.809047 | 2.294496e-50 | -8.615850e-47 |
| Msa0460680 | Msa0604890 | 0.833676 | 4.652066e-56 | -8.615850e-47 |
| Msa0460680 | Msa0617470 | 0.800340 | 1.509302e-48 | -8.615850e-47 |
| Msa0460680 | Msa0635070 | 0.805735 | 1.156581e-49 | -8.615850e-47 |
| Msa0460680 | Msa0646180 | 0.836487 | 9.090751e-57 | -8.615850e-47 |
| Msa0460680 | Msa0651340 | 0.808699 | 2.724669e-50 | -8.615850e-47 |
| Msa0460680 | Msa0700250 | 0.802966 | 4.366255e-49 | -8.615850e-47 |
| Msa0460680 | Msa0722660 | 0.832215 | 1.073376e-55 | -8.615850e-47 |
| Msa0460680 | Msa0870220 | 0.821185 | 4.617285e-53 | -8.615850e-47 |
| Msa0460680 | Msa0903460 | 0.807513 | 4.873893e-50 | -8.615850e-47 |
| Msa0460680 | Msa0935930 | 0.817872 | 2.632396e-52 | -8.615850e-47 |
| Msa0460680 | Msa0972930 | 0.823229 | 1.550030e-53 | -8.615850e-47 |
| Msa0460680 | Msa1029190 | 0.807447 | 5.032302e-50 | -8.615850e-47 |
| Msa0460680 | Msa1038570 | 0.811268 | 7.621541e-51 | -8.615850e-47 |
| Msa0460680 | Msa1065620 | 0.804836 | 1.784043e-49 | -8.615850e-47 |
| Msa0460680 | Msa1134430 | 0.813361 | 2.660927e-51 | -8.615850e-47 |
| Msa0460680 | Msa1213470 | 0.819194 | 1.320260e-52 | -8.615850e-47 |
| Msa0460680 | Msa1300370 | 0.818542 | 1.856107e-52 | -8.615850e-47 |
| Msa0460680 | Msa1333220 | 0.800963 | 1.126215e-48 | -8.615850e-47 |
| Msa0460680 | Msa1359880 | 0.837233 | 5.865922e-57 | -8.615850e-47 |
| Msa0460680 | Msa1395360 | 0.801635 | 8.202884e-49 | -8.615850e-47 |
| Msa0460680 | Msa1454330 | 0.804845 | 1.776751e-49 | -8.615850e-47 |
| Msa0264580 | Msa0460680 | 0.818556 | 1.842729e-52 | -8.615850e-47 |
| Msa0278340 | Msa0460680 | 0.811379 | 7.210091e-51 | -8.615850e-47 |
| Msa0295030 | Msa0460680 | 0.818480 | 1.918136e-52 | -8.615850e-47 |
| Msa0339970 | Msa0460680 | 0.818901 | 1.538585e-52 | -8.615850e-47 |
| Msa0362440 | Msa0460680 | 0.817905 | 2.587193e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0460680 | MtrunA17_Chr3g0109791 | 92.683 | 287 | 20 | 1 | 1 | 286 | 2 | 288 | 0.0 | 515 |
| Msa0460680 | MtrunA17_Chr5g0433851 | 60.000 | 285 | 104 | 5 | 18 | 293 | 4 | 287 | 7.49e-97 | 292 |
| Msa0460680 | MtrunA17_Chr6g0481061 | 45.583 | 283 | 135 | 8 | 1 | 269 | 1 | 278 | 7.42e-51 | 174 |
| Msa0460680 | MtrunA17_Chr1g0181771 | 57.143 | 98 | 34 | 1 | 45 | 142 | 36 | 125 | 6.10e-35 | 128 |
| Msa0460680 | MtrunA17_Chr8g0348391 | 40.984 | 183 | 87 | 3 | 16 | 196 | 24 | 187 | 2.15e-33 | 125 |
| Msa0460680 | MtrunA17_Chr6g0469431 | 53.922 | 102 | 39 | 1 | 36 | 137 | 30 | 123 | 4.70e-32 | 119 |
| Msa0460680 | MtrunA17_Chr7g0276421 | 66.019 | 103 | 33 | 1 | 37 | 137 | 7 | 109 | 1.07e-31 | 125 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0460680 | AT5G17300.1 | 50.562 | 267 | 95 | 5 | 15 | 271 | 4 | 243 | 3.26e-58 | 192 |
| Msa0460680 | AT5G37260.1 | 46.614 | 251 | 59 | 6 | 33 | 272 | 12 | 198 | 6.21e-52 | 173 |
| Msa0460680 | AT1G18330.1 | 52.899 | 138 | 54 | 1 | 44 | 181 | 38 | 164 | 2.94e-34 | 128 |
| Msa0460680 | AT3G10113.1 | 52.518 | 139 | 55 | 1 | 43 | 181 | 52 | 179 | 3.52e-34 | 127 |
| Msa0460680 | AT1G18330.2 | 52.518 | 139 | 55 | 1 | 43 | 181 | 63 | 190 | 6.35e-34 | 128 |
| Msa0460680 | AT3G09600.2 | 55.446 | 101 | 37 | 1 | 37 | 137 | 24 | 116 | 2.50e-33 | 124 |
| Msa0460680 | AT3G09600.6 | 55.446 | 101 | 37 | 1 | 37 | 137 | 24 | 116 | 2.50e-33 | 124 |
| Msa0460680 | AT3G09600.1 | 55.446 | 101 | 37 | 1 | 37 | 137 | 24 | 116 | 2.52e-33 | 124 |
| Msa0460680 | AT3G09600.7 | 55.446 | 101 | 37 | 1 | 37 | 137 | 24 | 116 | 2.52e-33 | 124 |
| Msa0460680 | AT3G09600.4 | 55.446 | 101 | 37 | 1 | 37 | 137 | 24 | 116 | 2.59e-33 | 124 |
| Msa0460680 | AT1G01520.2 | 42.045 | 176 | 82 | 5 | 20 | 195 | 26 | 181 | 3.04e-32 | 120 |
| Msa0460680 | AT1G01520.4 | 42.045 | 176 | 82 | 5 | 20 | 195 | 26 | 181 | 3.04e-32 | 120 |
| Msa0460680 | AT1G01520.3 | 42.045 | 176 | 82 | 5 | 20 | 195 | 26 | 181 | 4.36e-32 | 121 |
| Msa0460680 | AT1G01520.1 | 42.045 | 176 | 82 | 5 | 20 | 195 | 26 | 181 | 4.64e-32 | 121 |
| Msa0460680 | AT4G01280.1 | 53.913 | 115 | 43 | 2 | 23 | 137 | 28 | 132 | 1.13e-31 | 120 |
| Msa0460680 | AT4G01280.2 | 53.913 | 115 | 43 | 2 | 23 | 137 | 28 | 132 | 1.18e-31 | 120 |
| Msa0460680 | AT5G02840.3 | 56.989 | 93 | 32 | 1 | 45 | 137 | 37 | 121 | 2.64e-31 | 119 |
| Msa0460680 | AT5G02840.1 | 56.989 | 93 | 32 | 1 | 45 | 137 | 37 | 121 | 2.65e-31 | 119 |
| Msa0460680 | AT5G02840.2 | 56.989 | 93 | 32 | 1 | 45 | 137 | 37 | 121 | 2.65e-31 | 119 |
| Msa0460680 | AT5G02840.4 | 56.989 | 93 | 32 | 1 | 45 | 137 | 37 | 121 | 2.95e-31 | 118 |
| Msa0460680 | AT5G02840.5 | 56.989 | 93 | 32 | 1 | 45 | 137 | 37 | 121 | 3.97e-31 | 118 |
| Msa0460680 | AT5G52660.1 | 54.455 | 101 | 38 | 1 | 37 | 137 | 53 | 145 | 4.12e-31 | 119 |
| Msa0460680 | AT5G52660.2 | 54.455 | 101 | 38 | 1 | 37 | 137 | 53 | 145 | 4.37e-31 | 119 |
| Msa0460680 | AT1G01060.4 | 57.937 | 126 | 50 | 2 | 45 | 167 | 13 | 138 | 1.36e-30 | 122 |
| Msa0460680 | AT1G01060.8 | 57.937 | 126 | 50 | 2 | 45 | 167 | 13 | 138 | 1.40e-30 | 122 |
| Msa0460680 | AT1G01060.2 | 57.937 | 126 | 50 | 2 | 45 | 167 | 13 | 138 | 1.40e-30 | 122 |
| Msa0460680 | AT1G01060.3 | 57.937 | 126 | 50 | 2 | 45 | 167 | 13 | 138 | 1.40e-30 | 122 |
| Msa0460680 | AT1G01060.1 | 57.937 | 126 | 50 | 2 | 45 | 167 | 13 | 138 | 1.40e-30 | 122 |
| Msa0460680 | AT1G01060.7 | 57.937 | 126 | 50 | 2 | 45 | 167 | 13 | 138 | 1.40e-30 | 122 |
| Msa0460680 | AT2G46830.1 | 57.851 | 121 | 45 | 2 | 37 | 155 | 5 | 121 | 2.45e-30 | 120 |
| Msa0460680 | AT5G17300.2 | 46.073 | 191 | 76 | 4 | 81 | 271 | 5 | 168 | 2.30e-23 | 98.2 |
| Msa0460680 | AT3G09600.3 | 51.562 | 64 | 23 | 1 | 74 | 137 | 5 | 60 | 2.67e-16 | 77.4 |
| Msa0460680 | AT3G09600.8 | 51.562 | 64 | 23 | 1 | 74 | 137 | 5 | 60 | 2.67e-16 | 77.4 |
| Msa0460680 | AT3G09600.5 | 51.562 | 64 | 23 | 1 | 74 | 137 | 5 | 60 | 2.93e-16 | 77.0 |
| Msa0460680 | AT3G09600.9 | 51.562 | 64 | 23 | 1 | 74 | 137 | 5 | 60 | 2.93e-16 | 77.0 |
Find 126 sgRNAs with CRISPR-Local
Find 279 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCCCGGCCATACAGCTTTA+AGG | 0.174526 | 3_3:+58192895 | None:intergenic |
| GTGGATCTTATATAAAATTT+AGG | 0.186945 | 3_3:-58190811 | Msa0460680:three_prime_UTR |
| TAACATGGTAATGTAGAAAT+TGG | 0.201383 | 3_3:+58191151 | None:intergenic |
| GACAACTAGTCTATCTAAAA+AGG | 0.206857 | 3_3:+58191624 | None:intergenic |
| CTTACATGGTTTCTCATTAG+AGG | 0.261251 | 3_3:-58195173 | Msa0460680:five_prime_UTR |
| CGCGAATGATTATGCTCTTA+AGG | 0.273107 | 3_3:-58193097 | Msa0460680:intron |
| CTCTGTTTCGATATAGTATA+TGG | 0.282091 | 3_3:+58192959 | None:intergenic |
| TGAAATGTGTTAAATGAGTT+TGG | 0.299858 | 3_3:-58191309 | Msa0460680:three_prime_UTR |
| AGAAATTTCAATCCCGAAAA+AGG | 0.302937 | 3_3:-58192370 | Msa0460680:CDS |
| ATGAGCTGGTAATATGAAAA+AGG | 0.307935 | 3_3:-58191529 | Msa0460680:three_prime_UTR |
| GTCTCCTTCAACTTTGCCTT+TGG | 0.311115 | 3_3:+58195062 | None:intergenic |
| GGAGGAAAATTGGAACTTCT+TGG | 0.327774 | 3_3:-58191827 | Msa0460680:CDS |
| TAGAAAGGGAGGAGGAAAAT+TGG | 0.340113 | 3_3:-58191837 | Msa0460680:CDS |
| AGGAATTTCAATTGATTCCT+TGG | 0.346980 | 3_3:+58192461 | None:intergenic |
| AAGTGTAGATAAAACTGATT+TGG | 0.347735 | 3_3:+58192293 | None:intergenic |
| GCCTCAATTGTTGGAAAAGA+TGG | 0.348970 | 3_3:+58191886 | None:intergenic |
| TCTTACTCTTAATTGAGATA+TGG | 0.349705 | 3_3:+58191778 | None:intergenic |
| TCTGAGCATGACTTCGAATC+TGG | 0.349813 | 3_3:+58192712 | None:intergenic |
| CACATCCTTTGAGTTAGCTT+TGG | 0.349871 | 3_3:+58191278 | None:intergenic |
| ATAAAACTGATTTGGGAGAT+TGG | 0.361687 | 3_3:+58192301 | None:intergenic |
| TACTTAGATTAACAGATTGT+TGG | 0.365105 | 3_3:+58191062 | None:intergenic |
| ACATCCTTTGAGTTAGCTTT+GGG | 0.372456 | 3_3:+58191279 | None:intergenic |
| AAGGGTTTGTGCCATATAAA+AGG | 0.376865 | 3_3:-58191733 | Msa0460680:three_prime_UTR |
| TCTAACATGTATGTCATGAT+TGG | 0.376918 | 3_3:+58191856 | None:intergenic |
| CTGAGTTGAATATGAGTAAC+AGG | 0.381118 | 3_3:+58193135 | None:intergenic |
| TCAACTAGCTTGCGAGGATA+AGG | 0.387638 | 3_3:+58192408 | None:intergenic |
| ATCGGATGAACCAAGGATTT+CGG | 0.400444 | 3_3:+58192266 | None:intergenic |
| TCATGATGAGAAACCTCTTC+TGG | 0.400783 | 3_3:-58192121 | Msa0460680:intron |
| CAACAACGTTGACAATTCAT+TGG | 0.405018 | 3_3:-58195131 | Msa0460680:five_prime_UTR |
| CGGGCCTGGCGACGCATTGA+AGG | 0.426529 | 3_3:-58192878 | Msa0460680:intron |
| GGGTGCATAGGCTTACGTTT+TGG | 0.427838 | 3_3:+58192429 | None:intergenic |
| AGTGTAGATAAAACTGATTT+GGG | 0.427868 | 3_3:+58192294 | None:intergenic |
| TTACGCCTAGTGCCTATTGT+GGG | 0.436170 | 3_3:-58191005 | Msa0460680:three_prime_UTR |
| CTTGAAGCCTTAAAGCTGTA+TGG | 0.441266 | 3_3:-58192902 | Msa0460680:CDS |
| TATTCTCACATTTACCATGA+TGG | 0.443229 | 3_3:-58190858 | Msa0460680:three_prime_UTR |
| TCCGTTTGGTGTATCTGAAT+CGG | 0.446379 | 3_3:+58192248 | None:intergenic |
| GGCACGAAACTTGTGGGAAA+GGG | 0.447526 | 3_3:-58191751 | Msa0460680:three_prime_UTR |
| TGGGAATTGAACCCCACAAT+AGG | 0.448137 | 3_3:+58190993 | None:intergenic |
| TGGTCCTTGATATATTTAAA+CGG | 0.449429 | 3_3:+58190770 | None:intergenic |
| GGTTTGCATGCCTCAATTGT+TGG | 0.453490 | 3_3:+58191877 | None:intergenic |
| CAGGTCTGAAAACACTTGCT+TGG | 0.457820 | 3_3:+58192196 | None:intergenic |
| GTCACGTCTAGTGTGAGTCT+TGG | 0.459602 | 3_3:-58191176 | Msa0460680:three_prime_UTR |
| TCACGTCTAGTGTGAGTCTT+GGG | 0.461030 | 3_3:-58191175 | Msa0460680:three_prime_UTR |
| CAACTAGCTTGCGAGGATAA+GGG | 0.462388 | 3_3:+58192409 | None:intergenic |
| TTACAAACTATCTCATAGTC+TGG | 0.462952 | 3_3:-58195289 | Msa0460680:five_prime_UTR |
| TTCAAAATGTAGGATCAAGA+TGG | 0.466323 | 3_3:-58193210 | Msa0460680:intron |
| TAAAGCTGTATGGCCGGGCC+TGG | 0.467187 | 3_3:-58192892 | Msa0460680:CDS |
| ATGAGAAACCATGTAAGAAA+AGG | 0.468558 | 3_3:+58195179 | None:intergenic |
| CATACAGCTTTAAGGCTTCA+AGG | 0.472400 | 3_3:+58192903 | None:intergenic |
| TGGACACAACTAATCGATAT+CGG | 0.474217 | 3_3:+58192216 | None:intergenic |
| ATCGGAGATAAACTTCCGTT+TGG | 0.476291 | 3_3:+58192234 | None:intergenic |
| CACAGCTGTAGCTTATGTAT+AGG | 0.476680 | 3_3:+58191556 | None:intergenic |
| CCAGCTACATTTCCTACTGC+AGG | 0.478856 | 3_3:+58193165 | None:intergenic |
| ATCAGTGATTTCTGCAGCTA+TGG | 0.483934 | 3_3:-58195035 | Msa0460680:exon |
| CTTCAATGCGTCGCCAGGCC+CGG | 0.484298 | 3_3:+58192879 | None:intergenic |
| TCATGACATACATGTTAGAA+AGG | 0.487347 | 3_3:-58191852 | Msa0460680:CDS |
| CAGCTGTTGCAGATGAAGAC+TGG | 0.488878 | 3_3:+58191690 | None:intergenic |
| CATACCTTCAATGCGTCGCC+AGG | 0.491595 | 3_3:+58192874 | None:intergenic |
| GATCCACAATAAGACCTTGT+TGG | 0.491612 | 3_3:+58190827 | None:intergenic |
| CAAAGCTAACTCAAAGGATG+TGG | 0.499321 | 3_3:-58191277 | Msa0460680:three_prime_UTR |
| AAGCCTTAAAGCTGTATGGC+CGG | 0.499730 | 3_3:-58192898 | Msa0460680:CDS |
| GTCGGATGTATATATGCGGT+TGG | 0.502041 | 3_3:+58191250 | None:intergenic |
| TACAGCTGTGGTGGATGAGC+TGG | 0.504935 | 3_3:-58191543 | Msa0460680:three_prime_UTR |
| CTTACGCCTAGTGCCTATTG+TGG | 0.505842 | 3_3:-58191006 | Msa0460680:three_prime_UTR |
| ACACTTGGTTCCGAAATCCT+TGG | 0.507598 | 3_3:-58192276 | Msa0460680:CDS |
| GAAACCAAAGGCAAAGTTGA+AGG | 0.514597 | 3_3:-58195066 | Msa0460680:five_prime_UTR |
| GCTGCAGAAATCACTGATCA+AGG | 0.525636 | 3_3:+58195040 | None:intergenic |
| AGGAAGTTAGTTACCAGAAG+AGG | 0.529786 | 3_3:+58192108 | None:intergenic |
| GACAATTCACAGCTGAAAGT+GGG | 0.533332 | 3_3:+58191411 | None:intergenic |
| GAGTGAGGCACGAAACTTGT+GGG | 0.534531 | 3_3:-58191757 | Msa0460680:three_prime_UTR |
| AGCCTAGCTTCTTCCTCTGA+TGG | 0.534831 | 3_3:+58192159 | None:intergenic |
| ATCTGTTAATCTAAGTAATG+TGG | 0.535723 | 3_3:-58191056 | Msa0460680:three_prime_UTR |
| TAGTCCGTTTAAATATATCA+AGG | 0.535923 | 3_3:-58190774 | Msa0460680:three_prime_UTR |
| AGGCACGAAACTTGTGGGAA+AGG | 0.537353 | 3_3:-58191752 | Msa0460680:three_prime_UTR |
| AATCTTGTGGCTCACGTCCA+AGG | 0.538281 | 3_3:+58195449 | None:intergenic |
| TGTTGGTAGTAATTCCATCA+TGG | 0.545383 | 3_3:+58190844 | None:intergenic |
| TCGGATGTATATATGCGGTT+GGG | 0.548278 | 3_3:+58191251 | None:intergenic |
| TATCGAAACAGAGAGAAAGA+TGG | 0.552512 | 3_3:-58192949 | Msa0460680:CDS |
| TCCTACTGCAGGGCTAACAC+TGG | 0.552965 | 3_3:+58193176 | None:intergenic |
| AGACAATTCACAGCTGAAAG+TGG | 0.553041 | 3_3:+58191410 | None:intergenic |
| AGCCTTAAAGCTGTATGGCC+GGG | 0.555613 | 3_3:-58192897 | Msa0460680:CDS |
| GTTGGATGTATATATGTGGT+TGG | 0.556005 | 3_3:+58191080 | None:intergenic |
| ACACATGTTCATGACAACCT+TGG | 0.558267 | 3_3:-58195466 | Msa0460680:five_prime_UTR |
| CATGACATACATGTTAGAAA+GGG | 0.558691 | 3_3:-58191851 | Msa0460680:CDS |
| CGCCATCAGAGGAAGAAGCT+AGG | 0.562418 | 3_3:-58192161 | Msa0460680:CDS |
| TACATAAGCTACAGCTGTGG+TGG | 0.568248 | 3_3:-58191552 | Msa0460680:three_prime_UTR |
| TCCTCGCAAGCTAGTTGAGA+TGG | 0.569053 | 3_3:-58192403 | Msa0460680:CDS |
| TCCGATTCAGATACACCAAA+CGG | 0.581293 | 3_3:-58192249 | Msa0460680:CDS |
| TTTCGTAACTCTTGATATCA+CGG | 0.581340 | 3_3:-58191599 | Msa0460680:three_prime_UTR |
| TTGCGAGGATAAGGGTGCAT+AGG | 0.596615 | 3_3:+58192417 | None:intergenic |
| GACATACATGTTAGAAAGGG+AGG | 0.598447 | 3_3:-58191848 | Msa0460680:CDS |
| TTTCTCGACACAGAATATGT+CGG | 0.599822 | 3_3:-58192750 | Msa0460680:intron |
| TCATCCCAAAGCTAACTCAA+AGG | 0.604575 | 3_3:-58191283 | Msa0460680:three_prime_UTR |
| GATTGTTGGATGTATATATG+TGG | 0.607064 | 3_3:+58191076 | None:intergenic |
| CCTGCAGTAGGAAATGTAGC+TGG | 0.607570 | 3_3:-58193165 | Msa0460680:CDS |
| CTCAATTAAGAGTAAGAGTG+AGG | 0.608517 | 3_3:-58191772 | Msa0460680:exon |
| CTACCAACAAGGTCTTATTG+TGG | 0.609966 | 3_3:-58190830 | Msa0460680:three_prime_UTR |
| ACAATTCACAGCTGAAAGTG+GGG | 0.612141 | 3_3:+58191412 | None:intergenic |
| TTATCTCCGACGTGGAAATG+TGG | 0.618138 | 3_3:+58195414 | None:intergenic |
| TACGCCTAGTGCCTATTGTG+GGG | 0.619569 | 3_3:-58191004 | Msa0460680:three_prime_UTR |
| TGAATTCAAAACGCCATCAG+AGG | 0.625902 | 3_3:-58192172 | Msa0460680:CDS |
| CGCAAGCTAGTTGAGATGGT+CGG | 0.633361 | 3_3:-58192399 | Msa0460680:CDS |
| ATACATGTTAGAAAGGGAGG+AGG | 0.634259 | 3_3:-58191845 | Msa0460680:CDS |
| ATTACCATGTTAAATGTGTG+TGG | 0.634800 | 3_3:-58191140 | Msa0460680:three_prime_UTR |
| ACCATCTCAACTAGCTTGCG+AGG | 0.635742 | 3_3:+58192402 | None:intergenic |
| TGAACCCCACAATAGGCACT+AGG | 0.637522 | 3_3:+58191000 | None:intergenic |
| CAGCTACATTTCCTACTGCA+GGG | 0.637750 | 3_3:+58193166 | None:intergenic |
| AAAGCTAACTCAAAGGATGT+GGG | 0.643013 | 3_3:-58191276 | Msa0460680:three_prime_UTR |
| AAAATTAGTTCAAGTAACGA+GGG | 0.644126 | 3_3:-58191106 | Msa0460680:three_prime_UTR |
| CAATTCACAGCTGAAAGTGG+GGG | 0.645805 | 3_3:+58191413 | None:intergenic |
| AATTCACAGCTGAAAGTGGG+GGG | 0.659935 | 3_3:+58191414 | None:intergenic |
| TAGGCACTAGGCGTAAGAGT+AGG | 0.663904 | 3_3:+58191012 | None:intergenic |
| TATCTGAATCGGATGAACCA+AGG | 0.663936 | 3_3:+58192259 | None:intergenic |
| AGATCCACACACATTTAACA+TGG | 0.676563 | 3_3:+58191136 | None:intergenic |
| TCCAGTGTTAGCCCTGCAGT+AGG | 0.679374 | 3_3:-58193177 | Msa0460680:CDS |
| ACTTCTCCACATTTCCACGT+CGG | 0.681365 | 3_3:-58195420 | Msa0460680:five_prime_UTR |
| ACTCACACTAGACGTGACAG+TGG | 0.682348 | 3_3:+58191181 | None:intergenic |
| AGAGTGAGGCACGAAACTTG+TGG | 0.683163 | 3_3:-58191758 | Msa0460680:three_prime_UTR |
| CTCACACTAGACGTGACAGT+GGG | 0.693324 | 3_3:+58191182 | None:intergenic |
| GAGAAGTTGAATGAATCTTG+TGG | 0.697703 | 3_3:+58195436 | None:intergenic |
| TGCAAGCATTACAAACACCA+AGG | 0.703682 | 3_3:-58192478 | Msa0460680:CDS |
| TGATGGAATTACTACCAACA+AGG | 0.705107 | 3_3:-58190841 | Msa0460680:three_prime_UTR |
| TGAGATAGTTTGTAACAGTG+AGG | 0.706150 | 3_3:+58195297 | None:intergenic |
| CTATACATAAGCTACAGCTG+TGG | 0.706440 | 3_3:-58191555 | Msa0460680:three_prime_UTR |
| GAATGTCGGATGTATATATG+CGG | 0.710458 | 3_3:+58191246 | None:intergenic |
| ATATGTCGGTTCAAAGACTG+CGG | 0.730672 | 3_3:-58192736 | Msa0460680:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAGTTTAAATAAGTAAAA+TGG | - | chr3_3:58191511-58191530 | Msa0460680:three_prime_UTR | 10.0% |
| !! | AAAAACTTAATAAATATTGT+AGG | + | chr3_3:58191591-58191610 | None:intergenic | 10.0% |
| !!! | TAATAATTTTTTTGTAGAAA+TGG | - | chr3_3:58191680-58191699 | Msa0460680:three_prime_UTR | 10.0% |
| !!! | CAAATTTTCTATTTTTTTTT+AGG | + | chr3_3:58192182-58192201 | None:intergenic | 10.0% |
| !! | TTAAAAATAAAAATCATGTT+TGG | + | chr3_3:58192323-58192342 | None:intergenic | 10.0% |
| !!! | CCTGAATTTTTATTTTTAAT+CGG | + | chr3_3:58190796-58190815 | None:intergenic | 15.0% |
| !!! | AAAAGTATGGATTAATTTTA+TGG | + | chr3_3:58191635-58191654 | None:intergenic | 15.0% |
| !!! | ATATTGTCATAATTTTTTAG+AGG | - | chr3_3:58191836-58191855 | Msa0460680:CDS | 15.0% |
| !! | TCAAATAATGGTATAATTAT+AGG | - | chr3_3:58191896-58191915 | Msa0460680:CDS | 15.0% |
| !! | CAAATAATGGTATAATTATA+GGG | - | chr3_3:58191897-58191916 | Msa0460680:CDS | 15.0% |
| !!! | TTTTTCATAAAATAAGTTAG+CGG | + | chr3_3:58191955-58191974 | None:intergenic | 15.0% |
| !!! | AATAATATTGAGATTTTTGT+GGG | + | chr3_3:58192513-58192532 | None:intergenic | 15.0% |
| !!! | TAATAATATTGAGATTTTTG+TGG | + | chr3_3:58192514-58192533 | None:intergenic | 15.0% |
| !!! | ATTTTTCTATTTCAAAATGT+AGG | - | chr3_3:58193077-58193096 | Msa0460680:intron | 15.0% |
| !!! | GAATTTTTATTTTTAATCGG+TGG | + | chr3_3:58190793-58190812 | None:intergenic | 20.0% |
| !! | CCGATTAAAAATAAAAATTC+AGG | - | chr3_3:58190793-58190812 | Msa0460680:three_prime_UTR | 20.0% |
| !! | TTTCTCAGAAAAACAATTAA+GGG | + | chr3_3:58191215-58191234 | None:intergenic | 20.0% |
| !! | TCAAATGTTGGTATATTTAA+TGG | + | chr3_3:58191558-58191577 | None:intergenic | 20.0% |
| !!! | TGATTTGGTATAATTGATTT+TGG | - | chr3_3:58192238-58192257 | Msa0460680:CDS | 20.0% |
| !!! | AGAACTTGATTCTAAAAATA+TGG | - | chr3_3:58192281-58192300 | Msa0460680:CDS | 20.0% |
| !!! | TAAAAAATAATCCCTACTTT+TGG | - | chr3_3:58192370-58192389 | Msa0460680:CDS | 20.0% |
| !! | TAGAAATGTTGAATTGAAAA+GGG | + | chr3_3:58192471-58192490 | None:intergenic | 20.0% |
| !! | TTAGAAATGTTGAATTGAAA+AGG | + | chr3_3:58192472-58192491 | None:intergenic | 20.0% |
| !! | AGCAAAAATTATACAATGAA+AGG | + | chr3_3:58192887-58192906 | None:intergenic | 20.0% |
| !!! | AATTTTCTTTGTACTTCAAT+AGG | - | chr3_3:58193307-58193326 | Msa0460680:intron | 20.0% |
| !! | ACAAGGAAATTAATTAATGA+AGG | - | chr3_3:58193485-58193504 | Msa0460680:intron | 20.0% |
| !!! | ATTGTTTTGTTTATGGTTTA+TGG | + | chr3_3:58193651-58193670 | None:intergenic | 20.0% |
| !! | TAATTGTGAATAAGATGAAA+TGG | + | chr3_3:58194218-58194237 | None:intergenic | 20.0% |
| !! | AATACAAAAAGAAAACTTCT+GGG | + | chr3_3:58194862-58194881 | None:intergenic | 20.0% |
| !! | AAATACAAAAAGAAAACTTC+TGG | + | chr3_3:58194863-58194882 | None:intergenic | 20.0% |
| !!! | AATTTTATCTTTTGCAACAT+GGG | + | chr3_3:58195326-58195345 | None:intergenic | 20.0% |
| !!! | AAATTTTATCTTTTGCAACA+TGG | + | chr3_3:58195327-58195346 | None:intergenic | 20.0% |
| !! | GTGGATCTTATATAAAATTT+AGG | - | chr3_3:58195486-58195505 | Msa0460680:five_prime_UTR | 20.0% |
| !!! | TTTTTATTTTTAATCGGTGG+AGG | + | chr3_3:58190790-58190809 | None:intergenic | 25.0% |
| !!! | TTTTTTTCAATCAATGAACG+AGG | - | chr3_3:58190945-58190964 | Msa0460680:three_prime_UTR | 25.0% |
| ! | GTTTCTCAGAAAAACAATTA+AGG | + | chr3_3:58191216-58191235 | None:intergenic | 25.0% |
| ! | TTTATAGAACACTTAGATTG+TGG | - | chr3_3:58191363-58191382 | Msa0460680:three_prime_UTR | 25.0% |
| !! | ATTTTATGGATGGAAAATGT+TGG | + | chr3_3:58191621-58191640 | None:intergenic | 25.0% |
| !!! | GTATGGATTAATTTTATGGA+TGG | + | chr3_3:58191631-58191650 | None:intergenic | 25.0% |
| ! | GGAGAACTAAAATCAAATAA+TGG | - | chr3_3:58191884-58191903 | Msa0460680:CDS | 25.0% |
| !!! | TCTCATATGTCTTTTTTTGT+TGG | + | chr3_3:58192097-58192116 | None:intergenic | 25.0% |
| !! | TCAATTTTGCAATTTCCAAA+AGG | + | chr3_3:58192221-58192240 | None:intergenic | 25.0% |
| ! | TGGAAATTGCAAAATTGATT+TGG | - | chr3_3:58192223-58192242 | Msa0460680:CDS | 25.0% |
| ! | TTCACTTAGAAAAAGTTTGA+AGG | - | chr3_3:58192797-58192816 | Msa0460680:intron | 25.0% |
| ! | TCACTTAGAAAAAGTTTGAA+GGG | - | chr3_3:58192798-58192817 | Msa0460680:intron | 25.0% |
| ! | TAAATGATTTCTGTTCTAGT+AGG | - | chr3_3:58192987-58193006 | Msa0460680:intron | 25.0% |
| ! | GTTCGAAATTTCCATTTATT+AGG | - | chr3_3:58193450-58193469 | Msa0460680:intron | 25.0% |
| ! | AGCTATACTTTCCTAATAAA+TGG | + | chr3_3:58193464-58193483 | None:intergenic | 25.0% |
| !!! | TCTTAGCATTGTTTTGTTTA+TGG | + | chr3_3:58193658-58193677 | None:intergenic | 25.0% |
| !! | AAACAATGCTAAGATTTTGA+TGG | - | chr3_3:58193664-58193683 | Msa0460680:intron | 25.0% |
| !! | AGTGTAGATAAAACTGATTT+GGG | + | chr3_3:58194006-58194025 | None:intergenic | 25.0% |
| ! | AAGTGTAGATAAAACTGATT+TGG | + | chr3_3:58194007-58194026 | None:intergenic | 25.0% |
| !!! | AAATCAGTTTTATCTACACT+TGG | - | chr3_3:58194006-58194025 | Msa0460680:intron | 25.0% |
| !! | TGAATAAGATGAAATGGATT+AGG | + | chr3_3:58194212-58194231 | None:intergenic | 25.0% |
| !! | GTCAAACTCTTAAACTTTTT+GGG | - | chr3_3:58194358-58194377 | Msa0460680:intron | 25.0% |
| ! | TCTTACTCTTAATTGAGATA+TGG | + | chr3_3:58194522-58194541 | None:intergenic | 25.0% |
| ! | AAAGGGAAAAATATAGTGAA+AGG | + | chr3_3:58194658-58194677 | None:intergenic | 25.0% |
| !! | ACAACTAGTCTATCTAAAAA+GGG | + | chr3_3:58194675-58194694 | None:intergenic | 25.0% |
| ! | ATACAAAAAGAAAACTTCTG+GGG | + | chr3_3:58194861-58194880 | None:intergenic | 25.0% |
| !!! | TTTTTGTTTCACAACTCTTT+AGG | - | chr3_3:58194914-58194933 | Msa0460680:intron | 25.0% |
| ! | TGAAATGTGTTAAATGAGTT+TGG | - | chr3_3:58194988-58195007 | Msa0460680:intron | 25.0% |
| !! | TAACATGGTAATGTAGAAAT+TGG | + | chr3_3:58195149-58195168 | None:intergenic | 25.0% |
| !! | CGTTACTTGAACTAATTTTT+GGG | + | chr3_3:58195190-58195209 | None:intergenic | 25.0% |
| !! | TCGTTACTTGAACTAATTTT+TGG | + | chr3_3:58195191-58195210 | None:intergenic | 25.0% |
| ! | AAAAATTAGTTCAAGTAACG+AGG | - | chr3_3:58195190-58195209 | Msa0460680:five_prime_UTR | 25.0% |
| ! | AAAATTAGTTCAAGTAACGA+GGG | - | chr3_3:58195191-58195210 | Msa0460680:five_prime_UTR | 25.0% |
| ! | TACTTAGATTAACAGATTGT+TGG | + | chr3_3:58195238-58195257 | None:intergenic | 25.0% |
| ! | ATCTGTTAATCTAAGTAATG+TGG | - | chr3_3:58195241-58195260 | Msa0460680:five_prime_UTR | 25.0% |
| TTACAAACTATCTCATAGTC+TGG | - | chr3_3:58191008-58191027 | Msa0460680:three_prime_UTR | 30.0% | |
| ! | TTCTATCTCCTTTTCTTACA+TGG | - | chr3_3:58191110-58191129 | Msa0460680:three_prime_UTR | 30.0% |
| ATGAGAAACCATGTAAGAAA+AGG | + | chr3_3:58191121-58191140 | None:intergenic | 30.0% | |
| !! | TTGTTTTTCTGAGAAACCAA+AGG | - | chr3_3:58191219-58191238 | Msa0460680:three_prime_UTR | 30.0% |
| !!! | TGGACCATATACTTTTTCAA+GGG | + | chr3_3:58191538-58191557 | None:intergenic | 30.0% |
| !!! | ATGGACCATATACTTTTTCA+AGG | + | chr3_3:58191539-58191558 | None:intergenic | 30.0% |
| GGATGACTAAAATCAAATGT+TGG | + | chr3_3:58191570-58191589 | None:intergenic | 30.0% | |
| GTTAGACTGACTAAAAAGTA+TGG | + | chr3_3:58191648-58191667 | None:intergenic | 30.0% | |
| ! | AAAAGCCTGAGGAATATTTT+AGG | - | chr3_3:58191863-58191882 | Msa0460680:CDS | 30.0% |
| !! | TATAGGTGTAGTTTTTAGGA+TGG | + | chr3_3:58191983-58192002 | None:intergenic | 30.0% |
| ! | TGTCTATAGGTGTAGTTTTT+AGG | + | chr3_3:58191987-58192006 | None:intergenic | 30.0% |
| !!! | GTATTTTTTGTTCCACCTTT+TGG | - | chr3_3:58192203-58192222 | Msa0460680:CDS | 30.0% |
| ! | ATTTTGCAATTTCCAAAAGG+TGG | + | chr3_3:58192218-58192237 | None:intergenic | 30.0% |
| !! | TTTTGGTACTGAAATGGATA+TGG | - | chr3_3:58192387-58192406 | Msa0460680:CDS | 30.0% |
| ! | AAGTACTGCATATTGTTTGA+GGG | + | chr3_3:58192858-58192877 | None:intergenic | 30.0% |
| ! | TAAGTACTGCATATTGTTTG+AGG | + | chr3_3:58192859-58192878 | None:intergenic | 30.0% |
| TCAAACAATATGCAGTACTT+AGG | - | chr3_3:58192858-58192877 | Msa0460680:intron | 30.0% | |
| CAAACAATATGCAGTACTTA+GGG | - | chr3_3:58192859-58192878 | Msa0460680:intron | 30.0% | |
| ACATCATACATGTATTCATG+TGG | - | chr3_3:58192923-58192942 | Msa0460680:CDS | 30.0% | |
| TTCAAAATGTAGGATCAAGA+TGG | - | chr3_3:58193087-58193106 | Msa0460680:intron | 30.0% | |
| CTCTGTTTCGATATAGTATA+TGG | + | chr3_3:58193341-58193360 | None:intergenic | 30.0% | |
| ! | TTAGGAAAGTATAGCTAACA+AGG | - | chr3_3:58193468-58193487 | Msa0460680:intron | 30.0% |
| !!! | TGCTCAGAAGTTTTTTTCTA+AGG | - | chr3_3:58193600-58193619 | Msa0460680:intron | 30.0% |
| !! | TAAGATTTTGATGGCACTAT+AGG | - | chr3_3:58193673-58193692 | Msa0460680:intron | 30.0% |
| ! | TGCAACTTATTTGAGATAGA+AGG | - | chr3_3:58193718-58193737 | Msa0460680:intron | 30.0% |
| ! | GCAACTTATTTGAGATAGAA+GGG | - | chr3_3:58193719-58193738 | Msa0460680:intron | 30.0% |
| ! | AGGAATTTCAATTGATTCCT+TGG | + | chr3_3:58193839-58193858 | None:intergenic | 30.0% |
| AGAAATTTCAATCCCGAAAA+AGG | - | chr3_3:58193927-58193946 | Msa0460680:intron | 30.0% | |
| ! | TTAGAGTTCATTGCCTTTTT+CGG | + | chr3_3:58193943-58193962 | None:intergenic | 30.0% |
| !! | ATAAAACTGATTTGGGAGAT+TGG | + | chr3_3:58193999-58194018 | None:intergenic | 30.0% |
| ! | CGTCAAACTCTTAAACTTTT+TGG | - | chr3_3:58194357-58194376 | Msa0460680:intron | 30.0% |
| TCTAACATGTATGTCATGAT+TGG | + | chr3_3:58194444-58194463 | None:intergenic | 30.0% | |
| TCATGACATACATGTTAGAA+AGG | - | chr3_3:58194445-58194464 | Msa0460680:intron | 30.0% | |
| CATGACATACATGTTAGAAA+GGG | - | chr3_3:58194446-58194465 | Msa0460680:intron | 30.0% | |
| ! | TTTGACATGCACCTTTTATA+TGG | + | chr3_3:58194578-58194597 | None:intergenic | 30.0% |
| ! | GACAACTAGTCTATCTAAAA+AGG | + | chr3_3:58194676-58194695 | None:intergenic | 30.0% |
| TTTCGTAACTCTTGATATCA+CGG | - | chr3_3:58194698-58194717 | Msa0460680:intron | 30.0% | |
| ATGAGCTGGTAATATGAAAA+AGG | - | chr3_3:58194768-58194787 | Msa0460680:intron | 30.0% | |
| TGAGCTGGTAATATGAAAAA+GGG | - | chr3_3:58194769-58194788 | Msa0460680:intron | 30.0% | |
| !!! | TACTCATGTTTTTGGAATGT+CGG | + | chr3_3:58195068-58195087 | None:intergenic | 30.0% |
| ! | TCTCATGTTACTCATGTTTT+TGG | + | chr3_3:58195076-58195095 | None:intergenic | 30.0% |
| ATTACCATGTTAAATGTGTG+TGG | - | chr3_3:58195157-58195176 | Msa0460680:five_prime_UTR | 30.0% | |
| GATTGTTGGATGTATATATG+TGG | + | chr3_3:58195224-58195243 | None:intergenic | 30.0% | |
| TATTCTCACATTTACCATGA+TGG | - | chr3_3:58195439-58195458 | Msa0460680:five_prime_UTR | 30.0% | |
| GAGAAGTTGAATGAATCTTG+TGG | + | chr3_3:58190864-58190883 | None:intergenic | 35.0% | |
| !!! | TGTTATTTTTATCTCCGACG+TGG | + | chr3_3:58190894-58190913 | None:intergenic | 35.0% |
| ! | TGAGATAGTTTGTAACAGTG+AGG | + | chr3_3:58191003-58191022 | None:intergenic | 35.0% |
| CTTACATGGTTTCTCATTAG+AGG | - | chr3_3:58191124-58191143 | Msa0460680:three_prime_UTR | 35.0% | |
| CAACAACGTTGACAATTCAT+TGG | - | chr3_3:58191166-58191185 | Msa0460680:three_prime_UTR | 35.0% | |
| ! | TGGTCCCTTGAAAAAGTATA+TGG | - | chr3_3:58191531-58191550 | Msa0460680:three_prime_UTR | 35.0% |
| TATGGATGGAAAATGTTGGA+GGG | + | chr3_3:58191617-58191636 | None:intergenic | 35.0% | |
| TTATGGATGGAAAATGTTGG+AGG | + | chr3_3:58191618-58191637 | None:intergenic | 35.0% | |
| GTTCTCCTAAAATATTCCTC+AGG | + | chr3_3:58191871-58191890 | None:intergenic | 35.0% | |
| TTAGCGGCACAATTTCTTTA+GGG | + | chr3_3:58191939-58191958 | None:intergenic | 35.0% | |
| ACACCTATAGACATAGACAT+AGG | - | chr3_3:58191994-58192013 | Msa0460680:CDS | 35.0% | |
| TCTCCTATGTCTATGTCTAT+AGG | + | chr3_3:58192000-58192019 | None:intergenic | 35.0% | |
| ATAGGAGATCTTGTCTTTGT+GGG | - | chr3_3:58192012-58192031 | Msa0460680:intron | 35.0% | |
| GACAGTGCATAATATATGCA+AGG | - | chr3_3:58192052-58192071 | Msa0460680:intron | 35.0% | |
| CATAATATATGCAAGGTTCG+AGG | - | chr3_3:58192059-58192078 | Msa0460680:intron | 35.0% | |
| CCATTTCAGTACCAAAAGTA+GGG | + | chr3_3:58192384-58192403 | None:intergenic | 35.0% | |
| TCCATTTCAGTACCAAAAGT+AGG | + | chr3_3:58192385-58192404 | None:intergenic | 35.0% | |
| ATTAAACACACTTTCTCTGC+GGG | + | chr3_3:58192564-58192583 | None:intergenic | 35.0% | |
| CATTAAACACACTTTCTCTG+CGG | + | chr3_3:58192565-58192584 | None:intergenic | 35.0% | |
| ! | CAGAAGCTTTGGTACATAAT+AGG | + | chr3_3:58192627-58192646 | None:intergenic | 35.0% |
| TGTAGCTAAACTCTCATCAT+TGG | - | chr3_3:58192645-58192664 | Msa0460680:intron | 35.0% | |
| GTAGCTAAACTCTCATCATT+GGG | - | chr3_3:58192646-58192665 | Msa0460680:intron | 35.0% | |
| TAGCTAAACTCTCATCATTG+GGG | - | chr3_3:58192647-58192666 | Msa0460680:intron | 35.0% | |
| CCATTTCTAAGCCTATGTTA+AGG | + | chr3_3:58192725-58192744 | None:intergenic | 35.0% | |
| CCTTAACATAGGCTTAGAAA+TGG | - | chr3_3:58192722-58192741 | Msa0460680:CDS | 35.0% | |
| AGTACTGCATATTGTTTGAG+GGG | + | chr3_3:58192857-58192876 | None:intergenic | 35.0% | |
| TCATACATGTATTCATGTGG+AGG | - | chr3_3:58192926-58192945 | Msa0460680:CDS | 35.0% | |
| CATACATGTATTCATGTGGA+GGG | - | chr3_3:58192927-58192946 | Msa0460680:CDS | 35.0% | |
| TACAGAGATGAATGATTCCT+TGG | - | chr3_3:58192960-58192979 | Msa0460680:CDS | 35.0% | |
| CAGAAATCATTTATCCACCA+AGG | + | chr3_3:58192980-58192999 | None:intergenic | 35.0% | |
| ! | CTGAGTTGAATATGAGTAAC+AGG | + | chr3_3:58193165-58193184 | None:intergenic | 35.0% |
| TATGCTCTTAAGGTTCTCTA+TGG | - | chr3_3:58193210-58193229 | Msa0460680:intron | 35.0% | |
| TCTTTGTACTTCAATAGGCA+AGG | - | chr3_3:58193312-58193331 | Msa0460680:intron | 35.0% | |
| TATCGAAACAGAGAGAAAGA+TGG | - | chr3_3:58193348-58193367 | Msa0460680:intron | 35.0% | |
| TTTCTCGACACAGAATATGT+CGG | - | chr3_3:58193547-58193566 | Msa0460680:intron | 35.0% | |
| CCTGATATGGAATCAAACAA+AGG | + | chr3_3:58193783-58193802 | None:intergenic | 35.0% | |
| ! | CCTTTGTTTGATTCCATATC+AGG | - | chr3_3:58193780-58193799 | Msa0460680:intron | 35.0% |
| ! | TAGAGTTCATTGCCTTTTTC+GGG | + | chr3_3:58193942-58193961 | None:intergenic | 35.0% |
| TGGACACAACTAATCGATAT+CGG | + | chr3_3:58194084-58194103 | None:intergenic | 35.0% | |
| ! | ACCATCTTTTCCAACAATTG+AGG | - | chr3_3:58194410-58194429 | Msa0460680:intron | 35.0% |
| CTCAATTAAGAGTAAGAGTG+AGG | - | chr3_3:58194525-58194544 | Msa0460680:intron | 35.0% | |
| AAGGGTTTGTGCCATATAAA+AGG | - | chr3_3:58194564-58194583 | Msa0460680:intron | 35.0% | |
| !! | ACATCCTTTGAGTTAGCTTT+GGG | + | chr3_3:58195021-58195040 | None:intergenic | 35.0% |
| AAAGCTAACTCAAAGGATGT+GGG | - | chr3_3:58195021-58195040 | Msa0460680:intron | 35.0% | |
| GAATGTCGGATGTATATATG+CGG | + | chr3_3:58195054-58195073 | None:intergenic | 35.0% | |
| AGATCCACACACATTTAACA+TGG | + | chr3_3:58195164-58195183 | None:intergenic | 35.0% | |
| GTTGGATGTATATATGTGGT+TGG | + | chr3_3:58195220-58195239 | None:intergenic | 35.0% | |
| !! | TGTTGGTAGTAATTCCATCA+TGG | + | chr3_3:58195456-58195475 | None:intergenic | 35.0% |
| TGATGGAATTACTACCAACA+AGG | - | chr3_3:58195456-58195475 | Msa0460680:five_prime_UTR | 35.0% | |
| ACACATGTTCATGACAACCT+TGG | - | chr3_3:58190831-58190850 | Msa0460680:three_prime_UTR | 40.0% | |
| !! | CATTGGTAGCTTTTGTGTTG+TGG | - | chr3_3:58191183-58191202 | Msa0460680:three_prime_UTR | 40.0% |
| GAAACCAAAGGCAAAGTTGA+AGG | - | chr3_3:58191231-58191250 | Msa0460680:three_prime_UTR | 40.0% | |
| ATCAGTGATTTCTGCAGCTA+TGG | - | chr3_3:58191262-58191281 | Msa0460680:three_prime_UTR | 40.0% | |
| TTAGAGGAATCAAAAGCCTG+AGG | - | chr3_3:58191852-58191871 | Msa0460680:CDS | 40.0% | |
| GTTAGCGGCACAATTTCTTT+AGG | + | chr3_3:58191940-58191959 | None:intergenic | 40.0% | |
| CATAGGAGATCTTGTCTTTG+TGG | - | chr3_3:58192011-58192030 | Msa0460680:intron | 40.0% | |
| !!! | ATGTCTTTTTTTGTTGGCCG+AGG | + | chr3_3:58192091-58192110 | None:intergenic | 40.0% |
| AAGCTTGTACAACTTGTAGC+TGG | - | chr3_3:58192145-58192164 | Msa0460680:CDS | 40.0% | |
| !! | CCCTACTTTTGGTACTGAAA+TGG | - | chr3_3:58192381-58192400 | Msa0460680:CDS | 40.0% |
| GTGAATAGTACTTGTGGAGT+AGG | + | chr3_3:58192595-58192614 | None:intergenic | 40.0% | |
| CTCCACAAGTACTATTCACT+TGG | - | chr3_3:58192596-58192615 | Msa0460680:intron | 40.0% | |
| CTCCAAGTGAATAGTACTTG+TGG | + | chr3_3:58192601-58192620 | None:intergenic | 40.0% | |
| CACAAGTACTATTCACTTGG+AGG | - | chr3_3:58192599-58192618 | Msa0460680:intron | 40.0% | |
| GAGTTTAGCTACAGAAGCTT+TGG | + | chr3_3:58192638-58192657 | None:intergenic | 40.0% | |
| AGCTAAACTCTCATCATTGG+GGG | - | chr3_3:58192648-58192667 | Msa0460680:intron | 40.0% | |
| AGAGATGAATGATTCCTTGG+TGG | - | chr3_3:58192963-58192982 | Msa0460680:CDS | 40.0% | |
| TCTGTTCTAGTAGGCTCTTA+AGG | - | chr3_3:58192996-58193015 | Msa0460680:intron | 40.0% | |
| CGCGAATGATTATGCTCTTA+AGG | - | chr3_3:58193200-58193219 | Msa0460680:CDS | 40.0% | |
| !! | CATACAGCTTTAAGGCTTCA+AGG | + | chr3_3:58193397-58193416 | None:intergenic | 40.0% |
| CTTGAAGCCTTAAAGCTGTA+TGG | - | chr3_3:58193395-58193414 | Msa0460680:intron | 40.0% | |
| ! | TGAAGGAGTATGATTGTGCT+TGG | - | chr3_3:58193502-58193521 | Msa0460680:intron | 40.0% |
| !! | ATATGTCGGTTCAAAGACTG+CGG | - | chr3_3:58193561-58193580 | Msa0460680:intron | 40.0% |
| TGCAAGCATTACAAACACCA+AGG | - | chr3_3:58193819-58193838 | Msa0460680:intron | 40.0% | |
| !! | ATAGGCTTACGTTTTGGTCT+AGG | + | chr3_3:58193865-58193884 | None:intergenic | 40.0% |
| ATCGGATGAACCAAGGATTT+CGG | + | chr3_3:58194034-58194053 | None:intergenic | 40.0% | |
| TATCTGAATCGGATGAACCA+AGG | + | chr3_3:58194041-58194060 | None:intergenic | 40.0% | |
| TCCGATTCAGATACACCAAA+CGG | - | chr3_3:58194048-58194067 | Msa0460680:intron | 40.0% | |
| !! | TCCGTTTGGTGTATCTGAAT+CGG | + | chr3_3:58194052-58194071 | None:intergenic | 40.0% |
| ATCGGAGATAAACTTCCGTT+TGG | + | chr3_3:58194066-58194085 | None:intergenic | 40.0% | |
| TGAATTCAAAACGCCATCAG+AGG | - | chr3_3:58194125-58194144 | Msa0460680:intron | 40.0% | |
| TCATGATGAGAAACCTCTTC+TGG | - | chr3_3:58194176-58194195 | Msa0460680:intron | 40.0% | |
| AGGAAGTTAGTTACCAGAAG+AGG | + | chr3_3:58194192-58194211 | None:intergenic | 40.0% | |
| GCCTCAATTGTTGGAAAAGA+TGG | + | chr3_3:58194414-58194433 | None:intergenic | 40.0% | |
| GACATACATGTTAGAAAGGG+AGG | - | chr3_3:58194449-58194468 | Msa0460680:intron | 40.0% | |
| ATACATGTTAGAAAGGGAGG+AGG | - | chr3_3:58194452-58194471 | Msa0460680:intron | 40.0% | |
| TAGAAAGGGAGGAGGAAAAT+TGG | - | chr3_3:58194460-58194479 | Msa0460680:intron | 40.0% | |
| GGAGGAAAATTGGAACTTCT+TGG | - | chr3_3:58194470-58194489 | Msa0460680:intron | 40.0% | |
| CACAGCTGTAGCTTATGTAT+AGG | + | chr3_3:58194744-58194763 | None:intergenic | 40.0% | |
| CTATACATAAGCTACAGCTG+TGG | - | chr3_3:58194742-58194761 | Msa0460680:intron | 40.0% | |
| GCTGGTAATATGAAAAAGGG+AGG | - | chr3_3:58194772-58194791 | Msa0460680:intron | 40.0% | |
| AAAAAGGGAGGCAGAAGAAT+GGG | - | chr3_3:58194784-58194803 | Msa0460680:intron | 40.0% | |
| ACAATTCACAGCTGAAAGTG+GGG | + | chr3_3:58194888-58194907 | None:intergenic | 40.0% | |
| GACAATTCACAGCTGAAAGT+GGG | + | chr3_3:58194889-58194908 | None:intergenic | 40.0% | |
| AGACAATTCACAGCTGAAAG+TGG | + | chr3_3:58194890-58194909 | None:intergenic | 40.0% | |
| TCATCCCAAAGCTAACTCAA+AGG | - | chr3_3:58195014-58195033 | Msa0460680:intron | 40.0% | |
| ! | CACATCCTTTGAGTTAGCTT+TGG | + | chr3_3:58195022-58195041 | None:intergenic | 40.0% |
| CAAAGCTAACTCAAAGGATG+TGG | - | chr3_3:58195020-58195039 | Msa0460680:intron | 40.0% | |
| TCGGATGTATATATGCGGTT+GGG | + | chr3_3:58195049-58195068 | None:intergenic | 40.0% | |
| !! | CTACCAACAAGGTCTTATTG+TGG | - | chr3_3:58195467-58195486 | Msa0460680:five_prime_UTR | 40.0% |
| GATCCACAATAAGACCTTGT+TGG | + | chr3_3:58195473-58195492 | None:intergenic | 40.0% | |
| ACTTCTCCACATTTCCACGT+CGG | - | chr3_3:58190877-58190896 | Msa0460680:three_prime_UTR | 45.0% | |
| TTATCTCCGACGTGGAAATG+TGG | + | chr3_3:58190886-58190905 | None:intergenic | 45.0% | |
| GTCTCCTTCAACTTTGCCTT+TGG | + | chr3_3:58191238-58191257 | None:intergenic | 45.0% | |
| GCTGCAGAAATCACTGATCA+AGG | + | chr3_3:58191260-58191279 | None:intergenic | 45.0% | |
| AAGGTTCGAGGTTGAAACCT+CGG | - | chr3_3:58192071-58192090 | Msa0460680:intron | 45.0% | |
| ! | TTAAGGCGTGTTGGGTTTTG+CGG | + | chr3_3:58192708-58192727 | None:intergenic | 45.0% |
| AACCCAACACGCCTTAACAT+AGG | - | chr3_3:58192711-58192730 | Msa0460680:CDS | 45.0% | |
| AGCCTATGTTAAGGCGTGTT+GGG | + | chr3_3:58192716-58192735 | None:intergenic | 45.0% | |
| AAGCCTATGTTAAGGCGTGT+TGG | + | chr3_3:58192717-58192736 | None:intergenic | 45.0% | |
| CAGCTACATTTCCTACTGCA+GGG | + | chr3_3:58193134-58193153 | None:intergenic | 45.0% | |
| AAGCCTTAAAGCTGTATGGC+CGG | - | chr3_3:58193399-58193418 | Msa0460680:intron | 45.0% | |
| TCTGAGCATGACTTCGAATC+TGG | + | chr3_3:58193588-58193607 | None:intergenic | 45.0% | |
| !! | TTACGTTTTGGTCTAGGAGG+AGG | + | chr3_3:58193859-58193878 | None:intergenic | 45.0% |
| ! | CAACTAGCTTGCGAGGATAA+GGG | + | chr3_3:58193891-58193910 | None:intergenic | 45.0% |
| ! | TCAACTAGCTTGCGAGGATA+AGG | + | chr3_3:58193892-58193911 | None:intergenic | 45.0% |
| ACACTTGGTTCCGAAATCCT+TGG | - | chr3_3:58194021-58194040 | Msa0460680:intron | 45.0% | |
| CAGGTCTGAAAACACTTGCT+TGG | + | chr3_3:58194104-58194123 | None:intergenic | 45.0% | |
| !! | GATGGCGTTTTGAATTCAGC+AGG | + | chr3_3:58194123-58194142 | None:intergenic | 45.0% |
| CTAGCGATAAGATCAAGTGC+AGG | + | chr3_3:58194274-58194293 | None:intergenic | 45.0% | |
| GGTTTGCATGCCTCAATTGT+TGG | + | chr3_3:58194423-58194442 | None:intergenic | 45.0% | |
| TACATAAGCTACAGCTGTGG+TGG | - | chr3_3:58194745-58194764 | Msa0460680:intron | 45.0% | |
| GAAAAAGGGAGGCAGAAGAA+TGG | - | chr3_3:58194783-58194802 | Msa0460680:intron | 45.0% | |
| AATTCACAGCTGAAAGTGGG+GGG | + | chr3_3:58194886-58194905 | None:intergenic | 45.0% | |
| CAATTCACAGCTGAAAGTGG+GGG | + | chr3_3:58194887-58194906 | None:intergenic | 45.0% | |
| GTCGGATGTATATATGCGGT+TGG | + | chr3_3:58195050-58195069 | None:intergenic | 45.0% | |
| TCACGTCTAGTGTGAGTCTT+GGG | - | chr3_3:58195122-58195141 | Msa0460680:five_prime_UTR | 45.0% | |
| TTACGCCTAGTGCCTATTGT+GGG | - | chr3_3:58195292-58195311 | Msa0460680:five_prime_UTR | 45.0% | |
| TGGGAATTGAACCCCACAAT+AGG | + | chr3_3:58195307-58195326 | None:intergenic | 45.0% | |
| !! | AAAATTATTAAAAAATATGA+AGG | + | chr3_3:58191670-58191689 | None:intergenic | 5.0% |
| !!! | GTTAAAAAAATTATAATTTT+TGG | - | chr3_3:58191810-58191829 | Msa0460680:CDS | 5.0% |
| AATCTTGTGGCTCACGTCCA+AGG | + | chr3_3:58190851-58190870 | None:intergenic | 50.0% | |
| CTTTGTGGGCTTAGCTCAGT+TGG | - | chr3_3:58192026-58192045 | Msa0460680:intron | 50.0% | |
| CCAGCTACATTTCCTACTGC+AGG | + | chr3_3:58193135-58193154 | None:intergenic | 50.0% | |
| CCTGCAGTAGGAAATGTAGC+TGG | - | chr3_3:58193132-58193151 | Msa0460680:CDS | 50.0% | |
| AGCCTTAAAGCTGTATGGCC+GGG | - | chr3_3:58193400-58193419 | Msa0460680:intron | 50.0% | |
| GTGTCGCGAAGAACCTGATA+TGG | + | chr3_3:58193796-58193815 | None:intergenic | 50.0% | |
| !! | GGCTTACGTTTTGGTCTAGG+AGG | + | chr3_3:58193862-58193881 | None:intergenic | 50.0% |
| ! | GGGTGCATAGGCTTACGTTT+TGG | + | chr3_3:58193871-58193890 | None:intergenic | 50.0% |
| ! | TTGCGAGGATAAGGGTGCAT+AGG | + | chr3_3:58193883-58193902 | None:intergenic | 50.0% |
| TCCTCGCAAGCTAGTTGAGA+TGG | - | chr3_3:58193894-58193913 | Msa0460680:intron | 50.0% | |
| ! | ACCATCTCAACTAGCTTGCG+AGG | + | chr3_3:58193898-58193917 | None:intergenic | 50.0% |
| CGCAAGCTAGTTGAGATGGT+CGG | - | chr3_3:58193898-58193917 | Msa0460680:intron | 50.0% | |
| AGCCTAGCTTCTTCCTCTGA+TGG | + | chr3_3:58194141-58194160 | None:intergenic | 50.0% | |
| AGAGTGAGGCACGAAACTTG+TGG | - | chr3_3:58194539-58194558 | Msa0460680:intron | 50.0% | |
| GAGTGAGGCACGAAACTTGT+GGG | - | chr3_3:58194540-58194559 | Msa0460680:intron | 50.0% | |
| AGGCACGAAACTTGTGGGAA+AGG | - | chr3_3:58194545-58194564 | Msa0460680:intron | 50.0% | |
| GGCACGAAACTTGTGGGAAA+GGG | - | chr3_3:58194546-58194565 | Msa0460680:intron | 50.0% | |
| CAGCTGTTGCAGATGAAGAC+TGG | + | chr3_3:58194610-58194629 | None:intergenic | 50.0% | |
| CTCACACTAGACGTGACAGT+GGG | + | chr3_3:58195118-58195137 | None:intergenic | 50.0% | |
| ACTCACACTAGACGTGACAG+TGG | + | chr3_3:58195119-58195138 | None:intergenic | 50.0% | |
| GTCACGTCTAGTGTGAGTCT+TGG | - | chr3_3:58195121-58195140 | Msa0460680:five_prime_UTR | 50.0% | |
| TAGGCACTAGGCGTAAGAGT+AGG | + | chr3_3:58195288-58195307 | None:intergenic | 50.0% | |
| CTTACGCCTAGTGCCTATTG+TGG | - | chr3_3:58195291-58195310 | Msa0460680:five_prime_UTR | 50.0% | |
| TACGCCTAGTGCCTATTGTG+GGG | - | chr3_3:58195293-58195312 | Msa0460680:five_prime_UTR | 50.0% | |
| TGAACCCCACAATAGGCACT+AGG | + | chr3_3:58195300-58195319 | None:intergenic | 50.0% | |
| GTGGGCTTAGCTCAGTTGGT+AGG | - | chr3_3:58192030-58192049 | Msa0460680:intron | 55.0% | |
| TCCAGTGTTAGCCCTGCAGT+AGG | - | chr3_3:58193120-58193139 | Msa0460680:CDS | 55.0% | |
| TCCTACTGCAGGGCTAACAC+TGG | + | chr3_3:58193124-58193143 | None:intergenic | 55.0% | |
| CATACCTTCAATGCGTCGCC+AGG | + | chr3_3:58193426-58193445 | None:intergenic | 55.0% | |
| CTGGCGACGCATTGAAGGTA+TGG | - | chr3_3:58193424-58193443 | Msa0460680:intron | 55.0% | |
| ! | CGACGCATTGAAGGTATGGC+TGG | - | chr3_3:58193428-58193447 | Msa0460680:intron | 55.0% |
| CGCCATCAGAGGAAGAAGCT+AGG | - | chr3_3:58194136-58194155 | Msa0460680:intron | 55.0% | |
| !! | TACAGCTGTGGTGGATGAGC+TGG | - | chr3_3:58194754-58194773 | Msa0460680:intron | 55.0% |
| GGCCCGGCCATACAGCTTTA+AGG | + | chr3_3:58193405-58193424 | None:intergenic | 60.0% | |
| TAAAGCTGTATGGCCGGGCC+TGG | - | chr3_3:58193405-58193424 | Msa0460680:intron | 60.0% | |
| CTTCAATGCGTCGCCAGGCC+CGG | + | chr3_3:58193421-58193440 | None:intergenic | 65.0% | |
| CGGGCCTGGCGACGCATTGA+AGG | - | chr3_3:58193419-58193438 | Msa0460680:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 58190774 | 58195545 | 58190774 | ID=Msa0460680;Name=Msa0460680 |
| chr3_3 | mRNA | 58190774 | 58195545 | 58190774 | ID=Msa0460680-mRNA-1;Parent=Msa0460680;Name=Msa0460680-mRNA-1;_AED=0.20;_eAED=0.20;_QI=507|1|1|1|1|1|6|1012|314 |
| chr3_3 | exon | 58190774 | 58192025 | 58190774 | ID=Msa0460680-mRNA-1:exon:12117;Parent=Msa0460680-mRNA-1 |
| chr3_3 | exon | 58192122 | 58192517 | 58192122 | ID=Msa0460680-mRNA-1:exon:12116;Parent=Msa0460680-mRNA-1 |
| chr3_3 | exon | 58192698 | 58192759 | 58192698 | ID=Msa0460680-mRNA-1:exon:12115;Parent=Msa0460680-mRNA-1 |
| chr3_3 | exon | 58192879 | 58192990 | 58192879 | ID=Msa0460680-mRNA-1:exon:12114;Parent=Msa0460680-mRNA-1 |
| chr3_3 | exon | 58193098 | 58193220 | 58193098 | ID=Msa0460680-mRNA-1:exon:12113;Parent=Msa0460680-mRNA-1 |
| chr3_3 | exon | 58195027 | 58195545 | 58195027 | ID=Msa0460680-mRNA-1:exon:12112;Parent=Msa0460680-mRNA-1 |
| chr3_3 | five_prime_UTR | 58195039 | 58195545 | 58195039 | ID=Msa0460680-mRNA-1:five_prime_utr;Parent=Msa0460680-mRNA-1 |
| chr3_3 | CDS | 58195027 | 58195038 | 58195027 | ID=Msa0460680-mRNA-1:cds;Parent=Msa0460680-mRNA-1 |
| chr3_3 | CDS | 58193098 | 58193220 | 58193098 | ID=Msa0460680-mRNA-1:cds;Parent=Msa0460680-mRNA-1 |
| chr3_3 | CDS | 58192879 | 58192990 | 58192879 | ID=Msa0460680-mRNA-1:cds;Parent=Msa0460680-mRNA-1 |
| chr3_3 | CDS | 58192698 | 58192759 | 58192698 | ID=Msa0460680-mRNA-1:cds;Parent=Msa0460680-mRNA-1 |
| chr3_3 | CDS | 58192122 | 58192517 | 58192122 | ID=Msa0460680-mRNA-1:cds;Parent=Msa0460680-mRNA-1 |
| chr3_3 | CDS | 58191786 | 58192025 | 58191786 | ID=Msa0460680-mRNA-1:cds;Parent=Msa0460680-mRNA-1 |
| chr3_3 | three_prime_UTR | 58190774 | 58191785 | 58190774 | ID=Msa0460680-mRNA-1:three_prime_utr;Parent=Msa0460680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
