Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0368100 | XP_003600719.1 | 96.907 | 291 | 3 | 2 | 1 | 285 | 1 | 291 | 0.0 | 543 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0368100 | sp|Q94EH8|THO4C_ARATH | 49.329 | 298 | 130 | 7 | 1 | 283 | 1 | 292 | 1.26e-64 | 207 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0368100 | G7J9D5 | 96.907 | 291 | 3 | 2 | 1 | 285 | 1 | 291 | 0.0 | 543 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0368100 | Msa0507060 | 0.904314 | 1.397391e-79 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0368100 | MtrunA17_Chr3g0110401 | 96.517 | 201 | 2 | 1 | 90 | 285 | 11 | 211 | 9.19e-137 | 384 |
| Msa0368100 | MtrunA17_Chr4g0031081 | 44.918 | 305 | 103 | 13 | 1 | 284 | 1 | 261 | 4.91e-48 | 160 |
| Msa0368100 | MtrunA17_Chr3g0110431 | 96.203 | 79 | 2 | 1 | 1 | 78 | 1 | 79 | 6.81e-41 | 136 |
| Msa0368100 | MtrunA17_Chr5g0438421 | 84.932 | 73 | 11 | 0 | 149 | 221 | 21 | 93 | 3.94e-36 | 125 |
| Msa0368100 | MtrunA17_Chr3g0145881 | 79.730 | 74 | 15 | 0 | 148 | 221 | 10 | 83 | 2.07e-33 | 119 |
| Msa0368100 | MtrunA17_Chr7g0223041 | 44.361 | 133 | 63 | 1 | 82 | 203 | 38 | 170 | 2.22e-29 | 113 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0368100 | AT5G37720.2 | 55.844 | 231 | 93 | 4 | 64 | 285 | 49 | 279 | 2.99e-68 | 213 |
| Msa0368100 | AT1G66260.2 | 49.329 | 298 | 130 | 7 | 1 | 283 | 1 | 292 | 1.28e-65 | 207 |
| Msa0368100 | AT1G66260.1 | 49.329 | 298 | 130 | 7 | 1 | 283 | 1 | 292 | 1.28e-65 | 207 |
| Msa0368100 | AT5G37720.1 | 65.563 | 151 | 48 | 2 | 64 | 210 | 49 | 199 | 1.45e-63 | 202 |
| Msa0368100 | AT5G59950.4 | 47.120 | 191 | 71 | 6 | 1 | 186 | 1 | 166 | 1.46e-42 | 145 |
| Msa0368100 | AT5G59950.1 | 39.310 | 290 | 124 | 7 | 1 | 285 | 1 | 243 | 2.19e-42 | 146 |
| Msa0368100 | AT5G59950.5 | 45.550 | 191 | 74 | 5 | 1 | 186 | 1 | 166 | 4.85e-42 | 145 |
| Msa0368100 | AT5G59950.3 | 40.000 | 290 | 120 | 8 | 1 | 285 | 1 | 241 | 3.20e-41 | 143 |
| Msa0368100 | AT5G02530.2 | 42.523 | 214 | 92 | 5 | 1 | 197 | 1 | 200 | 8.98e-39 | 138 |
| Msa0368100 | AT5G02530.1 | 42.523 | 214 | 92 | 5 | 1 | 197 | 1 | 200 | 9.82e-39 | 137 |
| Msa0368100 | AT5G59950.2 | 45.960 | 198 | 83 | 2 | 89 | 285 | 3 | 177 | 1.63e-38 | 134 |
Find 115 sgRNAs with CRISPR-Local
Find 343 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGACGTGGCAAAGCCCTTTC+TGG | 0.247048 | 3_1:-64243382 | Msa0368100:CDS |
| AAAGTTGTATGTTTCCAATT+TGG | 0.253815 | 3_1:-64242264 | Msa0368100:CDS |
| ATGACGAAGGCACGAAAATA+AGG | 0.279286 | 3_1:+64244416 | None:intergenic |
| GTGGCCGAGGCCGTCCTGGC+AGG | 0.287645 | 3_1:-64240490 | Msa0368100:CDS |
| ACGATATAACAATGTGCTTT+TGG | 0.299918 | 3_1:-64241409 | Msa0368100:CDS |
| AACTGCGTTGGAATCTTGTT+AGG | 0.313832 | 3_1:-64240227 | Msa0368100:three_prime_UTR |
| GATGAGAGAAAATTTAGATT+TGG | 0.320680 | 3_1:+64244470 | None:intergenic |
| GGGGACGTCGTGGTGGTTCA+AGG | 0.325831 | 3_1:-64240538 | Msa0368100:CDS |
| CTCTGCCATGCAAGAGTCTT+GGG | 0.329566 | 3_1:+64242344 | None:intergenic |
| AGGAGGACCGGTGCTGTTAA+TGG | 0.346085 | 3_1:-64243331 | Msa0368100:CDS |
| GGTCACTCCTCGGTCCAAAT+TGG | 0.356780 | 3_1:+64242250 | None:intergenic |
| CAACTTCAATTCATATAAAC+TGG | 0.358573 | 3_1:+64240170 | None:intergenic |
| CGTCGTGGTGGTTCAAGGGG+TGG | 0.364327 | 3_1:-64240533 | Msa0368100:CDS |
| TCCAACAATCTCAATCTTCA+TGG | 0.365558 | 3_1:+64241377 | None:intergenic |
| CTTGAATTCCTGCAGCTCTA+AGG | 0.366232 | 3_1:+64242303 | None:intergenic |
| GTCGTGGTGGTTCAAGGGGT+GGG | 0.367319 | 3_1:-64240532 | Msa0368100:CDS |
| ACATTCACCCGTGCAGTTAC+AGG | 0.376549 | 3_1:+64241339 | None:intergenic |
| TGTCAATTTAAAGTGATGTA+AGG | 0.380251 | 3_1:+64244518 | None:intergenic |
| CCCATGAAGATTGAGATTGT+TGG | 0.383677 | 3_1:-64241378 | Msa0368100:CDS |
| GATTCCAACGCAGTTCAAAA+AGG | 0.385128 | 3_1:+64240235 | None:intergenic |
| TCGTGGTGGTTCAAGGGGTG+GGG | 0.385349 | 3_1:-64240531 | Msa0368100:CDS |
| CTATACCCTTATGTCTTCAT+TGG | 0.385839 | 3_1:+64242229 | None:intergenic |
| CTTAGAGCTGCAGGAATTCA+AGG | 0.388697 | 3_1:-64242302 | Msa0368100:CDS |
| GACGGCAGCTGTACGCGGTT+TGG | 0.390001 | 3_1:-64244565 | Msa0368100:five_prime_UTR |
| GCCCTTTCTGGCCGTGGAAG+TGG | 0.394657 | 3_1:-64243370 | Msa0368100:CDS |
| GGCCGTCCTGGCAGGGGTGG+AGG | 0.402653 | 3_1:-64240482 | Msa0368100:CDS |
| CACCCCTGCCAGGACGGCCT+CGG | 0.413054 | 3_1:+64240486 | None:intergenic |
| GGACGTGGCCGAGGCCGTCC+TGG | 0.415266 | 3_1:-64240494 | Msa0368100:CDS |
| CGTGGTGGTTCAAGGGGTGG+GGG | 0.425160 | 3_1:-64240530 | Msa0368100:CDS |
| GGTGGGAGCGTGCGTGGACG+TGG | 0.428703 | 3_1:-64240509 | Msa0368100:CDS |
| AGTAACAGAGGCAGGGGCAG+AGG | 0.432228 | 3_1:-64243403 | Msa0368100:CDS |
| ACTGCGTTGGAATCTTGTTA+GGG | 0.438947 | 3_1:-64240226 | Msa0368100:three_prime_UTR |
| GCCATGCTGAATCGTGGTGC+CGG | 0.444836 | 3_1:-64240930 | Msa0368100:CDS |
| TGGCCGAGGCCGTCCTGGCA+GGG | 0.445332 | 3_1:-64240489 | Msa0368100:CDS |
| GGCAAAGCCCTTTCTGGCCG+TGG | 0.445737 | 3_1:-64243376 | Msa0368100:CDS |
| AGGGGTGGAGGTCGAGGTCG+TGG | 0.447345 | 3_1:-64240470 | Msa0368100:CDS |
| GCGCGAGTGTTGACATTAAG+TGG | 0.449989 | 3_1:+64243265 | None:intergenic |
| CCTGGCAGGGGTGGAGGTCG+AGG | 0.450413 | 3_1:-64240476 | Msa0368100:CDS |
| TGCTCTTAATTCTATCATCA+AGG | 0.451660 | 3_1:+64243428 | None:intergenic |
| TCCCACTTCCACGGCCAGAA+AGG | 0.454152 | 3_1:+64243368 | None:intergenic |
| GGGACGTCGTGGTGGTTCAA+GGG | 0.454817 | 3_1:-64240537 | Msa0368100:CDS |
| CATTGCACTTGCAATAAAAC+AGG | 0.458982 | 3_1:+64243471 | None:intergenic |
| TAAGGGTTTCTGATTGAAGA+AGG | 0.461295 | 3_1:+64244434 | None:intergenic |
| GAGTGACCAATGAAGACATA+AGG | 0.464791 | 3_1:-64242235 | Msa0368100:CDS |
| GGACGTCGTGGTGGTTCAAG+GGG | 0.465616 | 3_1:-64240536 | Msa0368100:CDS |
| TTGCATAGCCTCGGCATGAT+AGG | 0.466574 | 3_1:+64240394 | None:intergenic |
| AGAGCAGGAGTAACAGAGGC+AGG | 0.466694 | 3_1:-64243411 | Msa0368100:CDS |
| ACTCTGCCATGCAAGAGTCT+TGG | 0.467214 | 3_1:+64242343 | None:intergenic |
| GGCCGAGGCCGTCCTGGCAG+GGG | 0.467258 | 3_1:-64240488 | Msa0368100:CDS |
| ACATTACTAAAATTTCTTGA+AGG | 0.476283 | 3_1:-64243501 | Msa0368100:five_prime_UTR |
| AGAGGCAGGGGCAGAGGACG+TGG | 0.476702 | 3_1:-64243397 | Msa0368100:CDS |
| CCCTTTCTGGCCGTGGAAGT+GGG | 0.477499 | 3_1:-64243369 | Msa0368100:CDS |
| AGCGTGCGTGGACGTGGCCG+AGG | 0.483857 | 3_1:-64240503 | Msa0368100:CDS |
| AAGTGCAATGGCTTCTTCCT+TGG | 0.487333 | 3_1:-64243458 | Msa0368100:exon |
| CCTCGACCTCCACCCCTGCC+AGG | 0.492742 | 3_1:+64240476 | None:intergenic |
| ACAGCGAAGTGAAATATTCA+AGG | 0.494465 | 3_1:+64240273 | None:intergenic |
| CTATGAATGGACAGAGGAAG+AGG | 0.497841 | 3_1:-64241311 | Msa0368100:CDS |
| TGTCTTCATTGGTCACTCCT+CGG | 0.500657 | 3_1:+64242240 | None:intergenic |
| AGCAGGAGTAACAGAGGCAG+GGG | 0.505578 | 3_1:-64243409 | Msa0368100:CDS |
| CCTAGAGGTGGACGAGGTGG+AGG | 0.505753 | 3_1:-64240957 | Msa0368100:CDS |
| CCCACTTCCACGGCCAGAAA+GGG | 0.509644 | 3_1:+64243369 | None:intergenic |
| CGAGGCCGTCCTGGCAGGGG+TGG | 0.510022 | 3_1:-64240485 | Msa0368100:CDS |
| CCTCCACCTCGTCCACCTCT+AGG | 0.512884 | 3_1:+64240957 | None:intergenic |
| GAGGATAGCCTTAGAGCTGC+AGG | 0.514544 | 3_1:-64242311 | Msa0368100:CDS |
| GCACCACGATTCAGCATGGC+AGG | 0.515986 | 3_1:+64240933 | None:intergenic |
| GTCAATTTAAAGTGATGTAA+GGG | 0.516871 | 3_1:+64244519 | None:intergenic |
| ACCGCGTACAGCTGCCGTCA+TGG | 0.519335 | 3_1:+64244569 | None:intergenic |
| CCAACAATCTCAATCTTCAT+GGG | 0.522798 | 3_1:+64241378 | None:intergenic |
| AGGTCGAGGTCGTGGAAGAA+AGG | 0.524779 | 3_1:-64240462 | Msa0368100:CDS |
| TGACGAAGGCACGAAAATAA+GGG | 0.531178 | 3_1:+64244417 | None:intergenic |
| GGCCGTGGAAGTGGGACTCT+AGG | 0.534118 | 3_1:-64243361 | Msa0368100:CDS |
| CACCTAGAGTCCCACTTCCA+CGG | 0.534143 | 3_1:+64243359 | None:intergenic |
| CCATGCTGAATCGTGGTGCC+GGG | 0.534164 | 3_1:-64240929 | Msa0368100:intron |
| GTGAATGTCTCTGCTATGAA+TGG | 0.536430 | 3_1:-64241324 | Msa0368100:CDS |
| GTCAGCTGAGCAGCTTGACA+AGG | 0.536838 | 3_1:-64240426 | Msa0368100:CDS |
| CCGGTGCTGTTAATGGTAGA+AGG | 0.539937 | 3_1:-64243324 | Msa0368100:CDS |
| CGAGGTCGTGGAAGAAAGGA+TGG | 0.540568 | 3_1:-64240458 | Msa0368100:CDS |
| AATGGTAGAAGGACTGGTAA+TGG | 0.546415 | 3_1:-64243313 | Msa0368100:CDS |
| ATGGCAGAGTGATTTGTTTG+AGG | 0.547039 | 3_1:-64242330 | Msa0368100:CDS |
| CTAGGTGGTGGAAGGAGGAC+CGG | 0.547971 | 3_1:-64243343 | Msa0368100:CDS |
| GCTGTTAATGGTAGAAGGAC+TGG | 0.551681 | 3_1:-64243319 | Msa0368100:CDS |
| GTGGGACTCTAGGTGGTGGA+AGG | 0.552674 | 3_1:-64243351 | Msa0368100:CDS |
| TAGGGGCTGAATGATTAAGT+TGG | 0.553146 | 3_1:-64240208 | Msa0368100:three_prime_UTR |
| AGTGACCAATGAAGACATAA+GGG | 0.556774 | 3_1:-64242234 | Msa0368100:intron |
| GGACTCTAGGTGGTGGAAGG+AGG | 0.558453 | 3_1:-64243348 | Msa0368100:CDS |
| GGTAGAAGGACTGGTAATGG+TGG | 0.564423 | 3_1:-64243310 | Msa0368100:CDS |
| AGATCATGTTTGCATAGCCT+CGG | 0.566736 | 3_1:+64240385 | None:intergenic |
| GCTCTTAATTCTATCATCAA+GGG | 0.571802 | 3_1:+64243429 | None:intergenic |
| GGAAGTGGGACTCTAGGTGG+TGG | 0.577089 | 3_1:-64243355 | Msa0368100:CDS |
| GACCTCCACCCCTGCCAGGA+CGG | 0.580790 | 3_1:+64240480 | None:intergenic |
| AGCATTGCCTGTAACTGCAC+GGG | 0.581089 | 3_1:-64241346 | Msa0368100:CDS |
| CGTGGAAGTGGGACTCTAGG+TGG | 0.581306 | 3_1:-64243358 | Msa0368100:CDS |
| GAGCAGGAGTAACAGAGGCA+GGG | 0.585529 | 3_1:-64243410 | Msa0368100:CDS |
| CAGCATTGCCTGTAACTGCA+CGG | 0.587109 | 3_1:-64241347 | Msa0368100:CDS |
| ATCATCAAGGGAAATATCCA+AGG | 0.590712 | 3_1:+64243441 | None:intergenic |
| TACAGTTGGGGACGTCGTGG+TGG | 0.603932 | 3_1:-64240545 | Msa0368100:intron |
| TTGATGATAGAATTAAGAGC+AGG | 0.604101 | 3_1:-64243426 | Msa0368100:CDS |
| ATGGGGTGTTCCAGGCCTAG+AGG | 0.607004 | 3_1:-64240972 | Msa0368100:intron |
| GGGTGTTCCAGGCCTAGAGG+TGG | 0.613278 | 3_1:-64240969 | Msa0368100:intron |
| TCCAGGCCTAGAGGTGGACG+AGG | 0.613446 | 3_1:-64240963 | Msa0368100:intron |
| ATTAAGAGCAGGAGTAACAG+AGG | 0.614326 | 3_1:-64243415 | Msa0368100:CDS |
| GTCATCTTATGCTATTGCCA+AGG | 0.614785 | 3_1:-64243242 | Msa0368100:intron |
| TATGTTTCCAATTTGGACCG+AGG | 0.619441 | 3_1:-64242257 | Msa0368100:CDS |
| CCTTCTACCATTAACAGCAC+CGG | 0.619751 | 3_1:+64243324 | None:intergenic |
| AGGCCTAGAGGTGGACGAGG+TGG | 0.624405 | 3_1:-64240960 | Msa0368100:CDS |
| TCCATGACGGCAGCTGTACG+CGG | 0.625482 | 3_1:-64244570 | Msa0368100:five_prime_UTR |
| CCCGGCACCACGATTCAGCA+TGG | 0.628285 | 3_1:+64240929 | None:intergenic |
| CGCGAGTGTTGACATTAAGT+GGG | 0.629787 | 3_1:+64243266 | None:intergenic |
| CTGCGTTGGAATCTTGTTAG+GGG | 0.635042 | 3_1:-64240225 | Msa0368100:three_prime_UTR |
| GGAAGAACTGCTGTTCGTAG+AGG | 0.640179 | 3_1:-64243289 | Msa0368100:CDS |
| GGTCCTGCCATGCTGAATCG+TGG | 0.653506 | 3_1:-64240936 | Msa0368100:CDS |
| GCAGACCCAAGACTCTTGCA+TGG | 0.659828 | 3_1:-64242349 | Msa0368100:CDS |
| ACTCGAGACCTATCATGCCG+AGG | 0.676986 | 3_1:-64240402 | Msa0368100:CDS |
| TCTCTGCTATGAATGGACAG+AGG | 0.726591 | 3_1:-64241317 | Msa0368100:CDS |
| GAGCTTGATGAAGATGACGA+AGG | 0.727081 | 3_1:+64244403 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTGTAAATTTAACTTATAA+TGG | - | chr3_1:64243874-64243893 | Msa0368100:intron | 10.0% |
| !! | ATAGAAAAAAATCTCAATTT+GGG | + | chr3_1:64240355-64240374 | None:intergenic | 15.0% |
| !!! | AAATTGTGATTTTTTAAAGT+TGG | - | chr3_1:64240766-64240785 | Msa0368100:intron | 15.0% |
| !! | TTTGTTTAATAATACCTAAT+TGG | - | chr3_1:64240908-64240927 | Msa0368100:intron | 15.0% |
| !! | TTGTTTAATAATACCTAATT+GGG | - | chr3_1:64240909-64240928 | Msa0368100:intron | 15.0% |
| !!! | TAATAAAATATAACTTGTCA+CGG | + | chr3_1:64241015-64241034 | None:intergenic | 15.0% |
| !!! | ATTAAATTGTTAATTTTGCA+GGG | - | chr3_1:64241201-64241220 | Msa0368100:intron | 15.0% |
| !! | AAAAATCATATAACTAAAAG+TGG | - | chr3_1:64241890-64241909 | Msa0368100:intron | 15.0% |
| !! | AAAATCATATAACTAAAAGT+GGG | - | chr3_1:64241891-64241910 | Msa0368100:intron | 15.0% |
| !!! | ATATTGTTATTGTTTTAATC+TGG | - | chr3_1:64242244-64242263 | Msa0368100:CDS | 15.0% |
| !!! | TATTGTTATTGTTTTAATCT+GGG | - | chr3_1:64242245-64242264 | Msa0368100:CDS | 15.0% |
| !! | TTAGTTTATAATTTCCAATT+GGG | + | chr3_1:64242794-64242813 | None:intergenic | 15.0% |
| !!! | TTTAGTTTATAATTTCCAAT+TGG | + | chr3_1:64242795-64242814 | None:intergenic | 15.0% |
| !!! | AGTAAATATTATTTTGTGAA+TGG | - | chr3_1:64243607-64243626 | Msa0368100:intron | 15.0% |
| !!! | ACTTATTTACATTTTTGTAT+GGG | - | chr3_1:64243737-64243756 | Msa0368100:intron | 15.0% |
| !!! | CTTTCTTTAAATATTTTGAA+TGG | - | chr3_1:64244072-64244091 | Msa0368100:intron | 15.0% |
| !! | TAGAAAAAAATCTCAATTTG+GGG | + | chr3_1:64240354-64240373 | None:intergenic | 20.0% |
| !! | GATAGAAAAAAATCTCAATT+TGG | + | chr3_1:64240356-64240375 | None:intergenic | 20.0% |
| !! | AGATAAAAAAATTCAATACC+TGG | + | chr3_1:64240386-64240405 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTTTTGCTGTGAT+TGG | - | chr3_1:64240444-64240463 | Msa0368100:CDS | 20.0% |
| !!! | TTTTTTTTTTTGCTGTGATT+GGG | - | chr3_1:64240445-64240464 | Msa0368100:CDS | 20.0% |
| !!! | TGAATCGATGATTTTTTTAT+GGG | - | chr3_1:64240479-64240498 | Msa0368100:CDS | 20.0% |
| !!! | GATTTTTTAAAGTTGGATTA+TGG | - | chr3_1:64240773-64240792 | Msa0368100:intron | 20.0% |
| !!! | TGTTTGAAAAATTGTGATTT+TGG | - | chr3_1:64240829-64240848 | Msa0368100:intron | 20.0% |
| !! | TGTTTAATAATACCTAATTG+GGG | - | chr3_1:64240910-64240929 | Msa0368100:intron | 20.0% |
| !!! | GATTAAATTGTTAATTTTGC+AGG | - | chr3_1:64241200-64241219 | Msa0368100:intron | 20.0% |
| !! | ACATTACTAAAATTTCTTGA+AGG | - | chr3_1:64241226-64241245 | Msa0368100:intron | 20.0% |
| !! | ACTAATAATAAAAGTAGTTC+CGG | + | chr3_1:64241622-64241641 | None:intergenic | 20.0% |
| !! | AAATCATATAACTAAAAGTG+GGG | - | chr3_1:64241892-64241911 | Msa0368100:intron | 20.0% |
| !!! | ATTGTTATTGTTTTAATCTG+GGG | - | chr3_1:64242246-64242265 | Msa0368100:CDS | 20.0% |
| !!! | GAAGAAGTAAATAACTTTTT+TGG | - | chr3_1:64242292-64242311 | Msa0368100:CDS | 20.0% |
| !! | TTAGGTTATAATATCCAATT+GGG | + | chr3_1:64242866-64242885 | None:intergenic | 20.0% |
| !!! | TTTAGGTTATAATATCCAAT+TGG | + | chr3_1:64242867-64242886 | None:intergenic | 20.0% |
| !! | TATAACCTAAAATGTGAAAA+AGG | + | chr3_1:64242923-64242942 | None:intergenic | 20.0% |
| !!! | AAACAGTCTTTAAATGTTTT+GGG | - | chr3_1:64243090-64243109 | Msa0368100:intron | 20.0% |
| !!! | CACTTATTTACATTTTTGTA+TGG | - | chr3_1:64243736-64243755 | Msa0368100:intron | 20.0% |
| !!! | CTTATTTACATTTTTGTATG+GGG | - | chr3_1:64243738-64243757 | Msa0368100:intron | 20.0% |
| !!! | TCATTGTTATTTTTACAGTT+GGG | - | chr3_1:64244169-64244188 | Msa0368100:intron | 20.0% |
| !!! | TTTTAGTCAAAATATGCTAT+TGG | - | chr3_1:64244390-64244409 | Msa0368100:five_prime_UTR | 20.0% |
| !! | GTCAATTTAAAGTGATGTAA+GGG | + | chr3_1:64240211-64240230 | None:intergenic | 25.0% |
| !! | TGTCAATTTAAAGTGATGTA+AGG | + | chr3_1:64240212-64240231 | None:intergenic | 25.0% |
| ! | GATGAGAGAAAATTTAGATT+TGG | + | chr3_1:64240260-64240279 | None:intergenic | 25.0% |
| ! | AGAAAAAAATCTCAATTTGG+GGG | + | chr3_1:64240353-64240372 | None:intergenic | 25.0% |
| ! | TAAAAAAATTCAATACCTGG+TGG | + | chr3_1:64240383-64240402 | None:intergenic | 25.0% |
| !!! | TTTTTTTTTTGCTGTGATTG+GGG | - | chr3_1:64240446-64240465 | Msa0368100:CDS | 25.0% |
| !!! | GTGAATCGATGATTTTTTTA+TGG | - | chr3_1:64240478-64240497 | Msa0368100:CDS | 25.0% |
| !!! | GATGATTTTTTTATGGGATT+GGG | - | chr3_1:64240485-64240504 | Msa0368100:CDS | 25.0% |
| !!! | ATGATTTTTTTATGGGATTG+GGG | - | chr3_1:64240486-64240505 | Msa0368100:CDS | 25.0% |
| ! | TTGTGAATAGTGTAGAATTA+TGG | - | chr3_1:64240571-64240590 | Msa0368100:intron | 25.0% |
| ! | TAGAATTATGGATCTGATTT+GGG | - | chr3_1:64240583-64240602 | Msa0368100:intron | 25.0% |
| ! | TTAGGTTATAAATCGTTATC+TGG | - | chr3_1:64240638-64240657 | Msa0368100:intron | 25.0% |
| ! | AAAGTTGGATTATGGTTATA+TGG | - | chr3_1:64240781-64240800 | Msa0368100:intron | 25.0% |
| !!! | TGATTTTGGAATTTTGTTGT+GGG | - | chr3_1:64240843-64240862 | Msa0368100:intron | 25.0% |
| !!! | AATATTTTCAAGTGAATCTC+CGG | - | chr3_1:64240963-64240982 | Msa0368100:intron | 25.0% |
| !! | TTTGAAGAAATAACTTGTCA+CGG | + | chr3_1:64241048-64241067 | None:intergenic | 25.0% |
| ! | TTTCTTCAAATTATGCTATC+TGG | - | chr3_1:64241058-64241077 | Msa0368100:intron | 25.0% |
| ! | ATATAAGACTCATATAAGAC+CGG | + | chr3_1:64241104-64241123 | None:intergenic | 25.0% |
| ! | ATACTGAATCATCTCATTAA+TGG | + | chr3_1:64241579-64241598 | None:intergenic | 25.0% |
| !! | TACTTTTATTATTAGTTCCG+TGG | - | chr3_1:64241626-64241645 | Msa0368100:intron | 25.0% |
| !!! | TTGTTTGCTTTTGTTTTTGA+GGG | - | chr3_1:64241759-64241778 | Msa0368100:intron | 25.0% |
| !! | TCATTAGGTGATTTTCAAAA+TGG | - | chr3_1:64241849-64241868 | Msa0368100:intron | 25.0% |
| ! | CTAATTGTTTCATTAAGATG+AGG | - | chr3_1:64241934-64241953 | Msa0368100:intron | 25.0% |
| ! | CAATATTAATGAAGTAGATC+CGG | + | chr3_1:64242230-64242249 | None:intergenic | 25.0% |
| ! | AAAGTTGTATGTTTCCAATT+TGG | - | chr3_1:64242463-64242482 | Msa0368100:intron | 25.0% |
| ! | AAAATCCAATACTTACAGTT+GGG | + | chr3_1:64242683-64242702 | None:intergenic | 25.0% |
| ! | AAAAATCCAATACTTACAGT+TGG | + | chr3_1:64242684-64242703 | None:intergenic | 25.0% |
| !!! | AAACTCATGTCATTTTGTTT+TGG | - | chr3_1:64242711-64242730 | Msa0368100:intron | 25.0% |
| ! | ACTAATTTCTTATCTGTTTG+AGG | - | chr3_1:64242815-64242834 | Msa0368100:intron | 25.0% |
| !!! | CCTCATAAGAAATTAGTTTT+AGG | + | chr3_1:64242884-64242903 | None:intergenic | 25.0% |
| ! | CCTAAAACTAATTTCTTATG+AGG | - | chr3_1:64242881-64242900 | Msa0368100:intron | 25.0% |
| ! | AGGTTATAATTTCCAATTGT+TGG | - | chr3_1:64242935-64242954 | Msa0368100:intron | 25.0% |
| ! | GGTTATAATTTCCAATTGTT+GGG | - | chr3_1:64242936-64242955 | Msa0368100:intron | 25.0% |
| !! | CATTTTCTCAAAACGATTAA+TGG | + | chr3_1:64243023-64243042 | None:intergenic | 25.0% |
| ! | CAAAACATTTAAAGACTGTT+TGG | + | chr3_1:64243091-64243110 | None:intergenic | 25.0% |
| !! | CAAACAGTCTTTAAATGTTT+TGG | - | chr3_1:64243089-64243108 | Msa0368100:intron | 25.0% |
| !!! | TTTGGGAAGTTGTATTTTTT+AGG | - | chr3_1:64243107-64243126 | Msa0368100:intron | 25.0% |
| ! | TTGTTTAAAAAATGACCACA+GGG | + | chr3_1:64243538-64243557 | None:intergenic | 25.0% |
| ! | TTTGTTTAAAAAATGACCAC+AGG | + | chr3_1:64243539-64243558 | None:intergenic | 25.0% |
| ! | AACAAAAGTTGAACTGTATT+TGG | - | chr3_1:64243553-64243572 | Msa0368100:intron | 25.0% |
| ! | AAAATAATATTTACTCCCTC+GGG | + | chr3_1:64243602-64243621 | None:intergenic | 25.0% |
| ! | CAAAATAATATTTACTCCCT+CGG | + | chr3_1:64243603-64243622 | None:intergenic | 25.0% |
| ! | TTGATCTAGTAGTTTAGATA+TGG | + | chr3_1:64243646-64243665 | None:intergenic | 25.0% |
| ! | TCTTATGCATTTGATTATGA+TGG | - | chr3_1:64243941-64243960 | Msa0368100:intron | 25.0% |
| ! | CTATAGAAAATTTCCCATTT+AGG | - | chr3_1:64244017-64244036 | Msa0368100:intron | 25.0% |
| ! | TAATATATGCCAACCTAAAT+GGG | + | chr3_1:64244033-64244052 | None:intergenic | 25.0% |
| ! | TTAATATATGCCAACCTAAA+TGG | + | chr3_1:64244034-64244053 | None:intergenic | 25.0% |
| ! | ACTGTAAAAATAACAATGAG+AGG | + | chr3_1:64244168-64244187 | None:intergenic | 25.0% |
| !!! | CTCATTGTTATTTTTACAGT+TGG | - | chr3_1:64244168-64244187 | Msa0368100:intron | 25.0% |
| !!! | CATTGTTATTTTTACAGTTG+GGG | - | chr3_1:64244170-64244189 | Msa0368100:intron | 25.0% |
| ! | CAACTTCAATTCATATAAAC+TGG | + | chr3_1:64244560-64244579 | None:intergenic | 25.0% |
| ! | TCTGATTGAAGAAGGTTTTA+GGG | + | chr3_1:64240288-64240307 | None:intergenic | 30.0% |
| ! | TTCTGATTGAAGAAGGTTTT+AGG | + | chr3_1:64240289-64240308 | None:intergenic | 30.0% |
| TTTCCAAATTGAGATTTCGA+TGG | - | chr3_1:64240418-64240437 | Msa0368100:CDS | 30.0% | |
| AAACCATCGAAATCTCAATT+TGG | + | chr3_1:64240424-64240443 | None:intergenic | 30.0% | |
| !!! | CGATGATTTTTTTATGGGAT+TGG | - | chr3_1:64240484-64240503 | Msa0368100:CDS | 30.0% |
| GTAGAATTATGGATCTGATT+TGG | - | chr3_1:64240582-64240601 | Msa0368100:intron | 30.0% | |
| ! | AGAATTATGGATCTGATTTG+GGG | - | chr3_1:64240584-64240603 | Msa0368100:intron | 30.0% |
| !! | GCTTTGATCTAATGCTTTTT+AGG | - | chr3_1:64240620-64240639 | Msa0368100:intron | 30.0% |
| GGTTGCTAATTGTTGAAATT+TGG | - | chr3_1:64240659-64240678 | Msa0368100:intron | 30.0% | |
| TGCTAATTGTTGAAATTTGG+AGG | - | chr3_1:64240662-64240681 | Msa0368100:intron | 30.0% | |
| AATTGTTGAAATTTGGAGGT+TGG | - | chr3_1:64240666-64240685 | Msa0368100:intron | 30.0% | |
| AGGTTGGATGATTTATATGA+AGG | - | chr3_1:64240682-64240701 | Msa0368100:intron | 30.0% | |
| !!! | GGTTATATGGATTTTGAGTT+TGG | - | chr3_1:64240794-64240813 | Msa0368100:intron | 30.0% |
| !!! | GTGATTTTGGAATTTTGTTG+TGG | - | chr3_1:64240842-64240861 | Msa0368100:intron | 30.0% |
| !!! | GATTTTGGAATTTTGTTGTG+GGG | - | chr3_1:64240844-64240863 | Msa0368100:intron | 30.0% |
| TACAAAACTTAAATCCACGT+CGG | + | chr3_1:64240942-64240961 | None:intergenic | 30.0% | |
| !!! | ATATTTTCAAGTGAATCTCC+GGG | - | chr3_1:64240964-64240983 | Msa0368100:intron | 30.0% |
| TCTACATCCTTGAGTAATAT+TGG | - | chr3_1:64241163-64241182 | Msa0368100:intron | 30.0% | |
| CTACATCCTTGAGTAATATT+GGG | - | chr3_1:64241164-64241183 | Msa0368100:intron | 30.0% | |
| TGTATACCCAATATTACTCA+AGG | + | chr3_1:64241173-64241192 | None:intergenic | 30.0% | |
| TTGAGTAATATTGGGTATAC+AGG | - | chr3_1:64241172-64241191 | Msa0368100:intron | 30.0% | |
| GCTCTTAATTCTATCATCAA+GGG | + | chr3_1:64241301-64241320 | None:intergenic | 30.0% | |
| TGCTCTTAATTCTATCATCA+AGG | + | chr3_1:64241302-64241321 | None:intergenic | 30.0% | |
| ! | TTGATGATAGAATTAAGAGC+AGG | - | chr3_1:64241301-64241320 | Msa0368100:CDS | 30.0% |
| ! | TCATCTCATTAATGGACATA+GGG | + | chr3_1:64241571-64241590 | None:intergenic | 30.0% |
| ! | ATCATCTCATTAATGGACAT+AGG | + | chr3_1:64241572-64241591 | None:intergenic | 30.0% |
| ATAGAAAACTCAAAAGCAAC+CGG | - | chr3_1:64241600-64241619 | Msa0368100:intron | 30.0% | |
| !!! | TTGCTTTTGAGTTTCTATCA+CGG | + | chr3_1:64241646-64241665 | None:intergenic | 30.0% |
| CACTATGAAACTATGCAAAA+TGG | + | chr3_1:64241715-64241734 | None:intergenic | 30.0% | |
| !!! | GTTGTTTGCTTTTGTTTTTG+AGG | - | chr3_1:64241758-64241777 | Msa0368100:intron | 30.0% |
| ! | AATCCTAGCATATTTTCTGA+AGG | - | chr3_1:64241822-64241841 | Msa0368100:intron | 30.0% |
| ATGAGGTGACTTTAAATCTT+TGG | - | chr3_1:64241951-64241970 | Msa0368100:intron | 30.0% | |
| AAGAGGATCCAATAAAACAA+AGG | + | chr3_1:64241991-64242010 | None:intergenic | 30.0% | |
| CTATGTTAAAGATGGCAAAT+TGG | + | chr3_1:64242160-64242179 | None:intergenic | 30.0% | |
| TCAGTGTTCTATGTTAAAGA+TGG | + | chr3_1:64242168-64242187 | None:intergenic | 30.0% | |
| TTTGAATATATCACCATGAC+CGG | - | chr3_1:64242208-64242227 | Msa0368100:intron | 30.0% | |
| TCTTCAAGATTTATCAGAAC+AGG | + | chr3_1:64242277-64242296 | None:intergenic | 30.0% | |
| ! | TGAAACTTTATTTGACACTC+AGG | - | chr3_1:64242596-64242615 | Msa0368100:intron | 30.0% |
| GCTGTTCATTATGACAAAAA+TGG | - | chr3_1:64242654-64242673 | Msa0368100:intron | 30.0% | |
| TTATAATTTCCAATTGGGTG+TGG | + | chr3_1:64242789-64242808 | None:intergenic | 30.0% | |
| TTATAATATCCAATTGGGTG+CGG | + | chr3_1:64242861-64242880 | None:intergenic | 30.0% | |
| !! | ATCAGCCTTTTTCACATTTT+AGG | - | chr3_1:64242915-64242934 | Msa0368100:intron | 30.0% |
| TATAATTTCCAATTGTTGGG+TGG | - | chr3_1:64242939-64242958 | Msa0368100:intron | 30.0% | |
| ATAATTTCCAATTGTTGGGT+GGG | - | chr3_1:64242940-64242959 | Msa0368100:intron | 30.0% | |
| TTTGTATCAGATCAGATCAT+AGG | - | chr3_1:64242969-64242988 | Msa0368100:intron | 30.0% | |
| ACCCTTAATTTCAACATGAA+CGG | + | chr3_1:64243066-64243085 | None:intergenic | 30.0% | |
| ! | ACGATATAACAATGTGCTTT+TGG | - | chr3_1:64243318-64243337 | Msa0368100:CDS | 30.0% |
| ! | TATAACAATGTGCTTTTGGA+TGG | - | chr3_1:64243322-64243341 | Msa0368100:CDS | 30.0% |
| AATCGTATCAAACAAAAGTC+GGG | + | chr3_1:64243478-64243497 | None:intergenic | 30.0% | |
| GAATCGTATCAAACAAAAGT+CGG | + | chr3_1:64243479-64243498 | None:intergenic | 30.0% | |
| TTTATATTATTCAAGACCCG+AGG | - | chr3_1:64243583-64243602 | Msa0368100:intron | 30.0% | |
| TTATATTATTCAAGACCCGA+GGG | - | chr3_1:64243584-64243603 | Msa0368100:intron | 30.0% | |
| CTAAACTACTAGATCAAAAC+AGG | - | chr3_1:64243649-64243668 | Msa0368100:intron | 30.0% | |
| ACAGAACTAAGAACAATTAG+AGG | + | chr3_1:64243703-64243722 | None:intergenic | 30.0% | |
| !!! | TAAGTTTTTGAGATCAGTAG+TGG | - | chr3_1:64243821-64243840 | Msa0368100:intron | 30.0% |
| AACTGTAGAAGTAAAATGAC+TGG | - | chr3_1:64243969-64243988 | Msa0368100:intron | 30.0% | |
| GTAGAAACTAGACTATTGTT+TGG | - | chr3_1:64243991-64244010 | Msa0368100:intron | 30.0% | |
| AGAAAATTTCCCATTTAGGT+TGG | - | chr3_1:64244021-64244040 | Msa0368100:intron | 30.0% | |
| AATTGTCATCTGCTTAGAAT+GGG | - | chr3_1:64244106-64244125 | Msa0368100:intron | 30.0% | |
| ! | AAGCTTTTTGTCATTGTCAT+TGG | - | chr3_1:64244426-64244445 | Msa0368100:five_prime_UTR | 30.0% |
| !!! | TGAAGAAGGTTTTAGGGTTT+CGG | + | chr3_1:64240282-64240301 | None:intergenic | 35.0% |
| TAAGGGTTTCTGATTGAAGA+AGG | + | chr3_1:64240296-64240315 | None:intergenic | 35.0% | |
| !!! | TTTTTTCTATCATCTCCACC+AGG | - | chr3_1:64240365-64240384 | Msa0368100:three_prime_UTR | 35.0% |
| !!! | TTTTTTTATGGGATTGGGGT+AGG | - | chr3_1:64240490-64240509 | Msa0368100:CDS | 35.0% |
| TAGGAGATCGTGAATAGATT+AGG | - | chr3_1:64240509-64240528 | Msa0368100:CDS | 35.0% | |
| AGGAGATCGTGAATAGATTA+GGG | - | chr3_1:64240510-64240529 | Msa0368100:CDS | 35.0% | |
| GTGAATAGATTAGGGTAACA+GGG | - | chr3_1:64240518-64240537 | Msa0368100:CDS | 35.0% | |
| !! | GAATTATGGATCTGATTTGG+GGG | - | chr3_1:64240585-64240604 | Msa0368100:intron | 35.0% |
| !!! | ATGGATTTTGAGTTTGGATC+TGG | - | chr3_1:64240800-64240819 | Msa0368100:intron | 35.0% |
| ! | AATATAACTTGTCACGGTAC+CGG | + | chr3_1:64241009-64241028 | None:intergenic | 35.0% |
| CATTGCACTTGCAATAAAAC+AGG | + | chr3_1:64241259-64241278 | None:intergenic | 35.0% | |
| !! | CTGTTTTATTGCAAGTGCAA+TGG | - | chr3_1:64241257-64241276 | Msa0368100:intron | 35.0% |
| ATCATCAAGGGAAATATCCA+AGG | + | chr3_1:64241289-64241308 | None:intergenic | 35.0% | |
| GATAGAAACTCAAAAGCAAG+AGG | - | chr3_1:64241647-64241666 | Msa0368100:intron | 35.0% | |
| !! | TTTTCTGAAGGAGCTTCATT+AGG | - | chr3_1:64241834-64241853 | Msa0368100:intron | 35.0% |
| ACAACCATATACTTAGCAAG+AGG | + | chr3_1:64242008-64242027 | None:intergenic | 35.0% | |
| TTGCTAAGTATATGGTTGTG+CGG | - | chr3_1:64242009-64242028 | Msa0368100:intron | 35.0% | |
| TCTCAAAACACCATGAAACA+GGG | + | chr3_1:64242054-64242073 | None:intergenic | 35.0% | |
| ATCTCAAAACACCATGAAAC+AGG | + | chr3_1:64242055-64242074 | None:intergenic | 35.0% | |
| !!! | TGTTTCATGGTGTTTTGAGA+TGG | - | chr3_1:64242054-64242073 | Msa0368100:intron | 35.0% |
| ! | TCTGACTTGTAACATTACAC+CGG | - | chr3_1:64242106-64242125 | Msa0368100:CDS | 35.0% |
| AGTGACCAATGAAGACATAA+GGG | - | chr3_1:64242493-64242512 | Msa0368100:intron | 35.0% | |
| CTATACCCTTATGTCTTCAT+TGG | + | chr3_1:64242501-64242520 | None:intergenic | 35.0% | |
| AGAACGAAGCATATGATGAT+AGG | + | chr3_1:64242531-64242550 | None:intergenic | 35.0% | |
| TTAAACAATCCACACCCAAT+TGG | - | chr3_1:64242777-64242796 | Msa0368100:intron | 35.0% | |
| TAATTTCCAATTGTTGGGTG+GGG | - | chr3_1:64242941-64242960 | Msa0368100:intron | 35.0% | |
| TTTCTATGGAATCCATTTGG+AGG | + | chr3_1:64242995-64243014 | None:intergenic | 35.0% | |
| AGCTTTCTATGGAATCCATT+TGG | + | chr3_1:64242998-64243017 | None:intergenic | 35.0% | |
| ! | AAATGGATTCCATAGAAAGC+TGG | - | chr3_1:64242997-64243016 | Msa0368100:intron | 35.0% |
| TGCCGTTCATGTTGAAATTA+AGG | - | chr3_1:64243061-64243080 | Msa0368100:intron | 35.0% | |
| GCCGTTCATGTTGAAATTAA+GGG | - | chr3_1:64243062-64243081 | Msa0368100:intron | 35.0% | |
| TAAATGTTGCACCATGTAAC+AGG | - | chr3_1:64243243-64243262 | Msa0368100:CDS | 35.0% | |
| AAATGTTGCACCATGTAACA+GGG | - | chr3_1:64243244-64243263 | Msa0368100:CDS | 35.0% | |
| CCAACAATCTCAATCTTCAT+GGG | + | chr3_1:64243352-64243371 | None:intergenic | 35.0% | |
| TCCAACAATCTCAATCTTCA+TGG | + | chr3_1:64243353-64243372 | None:intergenic | 35.0% | |
| AAGTGATGAGCAGATGTATA+GGG | + | chr3_1:64243509-64243528 | None:intergenic | 35.0% | |
| ACTGATCTCAAAAACTTACC+CGG | + | chr3_1:64243819-64243838 | None:intergenic | 35.0% | |
| ! | CATTTTACTTCTACAGTTGC+AGG | + | chr3_1:64243967-64243986 | None:intergenic | 35.0% |
| GAATTGTCATCTGCTTAGAA+TGG | - | chr3_1:64244105-64244124 | Msa0368100:intron | 35.0% | |
| ACAGCGAAGTGAAATATTCA+AGG | + | chr3_1:64244457-64244476 | None:intergenic | 35.0% | |
| ! | TTATCCTTTTTGAACTGCGT+TGG | - | chr3_1:64244488-64244507 | Msa0368100:five_prime_UTR | 35.0% |
| ! | TGACGAAGGCACGAAAATAA+GGG | + | chr3_1:64240313-64240332 | None:intergenic | 40.0% |
| ! | ATGACGAAGGCACGAAAATA+AGG | + | chr3_1:64240314-64240333 | None:intergenic | 40.0% |
| CGTGAATAGATTAGGGTAAC+AGG | - | chr3_1:64240517-64240536 | Msa0368100:CDS | 40.0% | |
| ! | TTTGTTGTGGGGTGTTCAAT+TGG | - | chr3_1:64240855-64240874 | Msa0368100:intron | 40.0% |
| ! | TTGTTGTGGGGTGTTCAATT+GGG | - | chr3_1:64240856-64240875 | Msa0368100:intron | 40.0% |
| ! | GGGGATGGCTAATTAGATTT+TGG | - | chr3_1:64240876-64240895 | Msa0368100:intron | 40.0% |
| AAGTGAATCTCCGGGAATAA+CGG | - | chr3_1:64240972-64240991 | Msa0368100:intron | 40.0% | |
| TATTGCGTAACCGTTATTCC+CGG | + | chr3_1:64240985-64241004 | None:intergenic | 40.0% | |
| AATAACGGTTACGCAATAGC+CGG | - | chr3_1:64240987-64241006 | Msa0368100:intron | 40.0% | |
| ! | GAAATAACTTGTCACGGTAC+AGG | + | chr3_1:64241042-64241061 | None:intergenic | 40.0% |
| ATTAAGAGCAGGAGTAACAG+AGG | - | chr3_1:64241312-64241331 | Msa0368100:CDS | 40.0% | |
| ! | AATGGTAGAAGGACTGGTAA+TGG | - | chr3_1:64241414-64241433 | Msa0368100:CDS | 40.0% |
| GTCATCTTATGCTATTGCCA+AGG | - | chr3_1:64241485-64241504 | Msa0368100:intron | 40.0% | |
| TACAGATCTCTGATGTATGC+AGG | - | chr3_1:64241788-64241807 | Msa0368100:intron | 40.0% | |
| CTGATGTATGCAGGATTCTT+TGG | - | chr3_1:64241797-64241816 | Msa0368100:intron | 40.0% | |
| GCTCCTTCAGAAAATATGCT+AGG | + | chr3_1:64241828-64241847 | None:intergenic | 40.0% | |
| GGTGACTTTAAATCTTTGGC+TGG | - | chr3_1:64241955-64241974 | Msa0368100:intron | 40.0% | |
| !!! | TGTGCGGACCTTTGTTTTAT+TGG | - | chr3_1:64241980-64241999 | Msa0368100:intron | 40.0% |
| GGATCCTCTTGCTAAGTATA+TGG | - | chr3_1:64242001-64242020 | Msa0368100:intron | 40.0% | |
| TCAGTTACTTCCCTGTTTCA+TGG | - | chr3_1:64242041-64242060 | Msa0368100:intron | 40.0% | |
| ! | TTTTCGCTTACTATCAGCAC+TGG | - | chr3_1:64242080-64242099 | Msa0368100:CDS | 40.0% |
| !! | TTACACCGGTTTAAATGCAG+TGG | - | chr3_1:64242120-64242139 | Msa0368100:intron | 40.0% |
| !! | TACACCGGTTTAAATGCAGT+GGG | - | chr3_1:64242121-64242140 | Msa0368100:intron | 40.0% |
| TCAACCCACTGCATTTAAAC+CGG | + | chr3_1:64242128-64242147 | None:intergenic | 40.0% | |
| AGAACACTGATGTTTGACTG+TGG | - | chr3_1:64242178-64242197 | Msa0368100:intron | 40.0% | |
| GAACACTGATGTTTGACTGT+GGG | - | chr3_1:64242179-64242198 | Msa0368100:intron | 40.0% | |
| TAATGAAGTAGATCCGGTCA+TGG | + | chr3_1:64242224-64242243 | None:intergenic | 40.0% | |
| CAAACAGAACAGTTCCAGAA+TGG | + | chr3_1:64242341-64242360 | None:intergenic | 40.0% | |
| TGGAACTGTTCTGTTTGCTT+TGG | - | chr3_1:64242344-64242363 | Msa0368100:CDS | 40.0% | |
| !! | ATGGCAGAGTGATTTGTTTG+AGG | - | chr3_1:64242397-64242416 | Msa0368100:intron | 40.0% |
| TATGTTTCCAATTTGGACCG+AGG | - | chr3_1:64242470-64242489 | Msa0368100:intron | 40.0% | |
| GAGTGACCAATGAAGACATA+AGG | - | chr3_1:64242492-64242511 | Msa0368100:intron | 40.0% | |
| ! | AGGAACTTTTCTCTGAGCTT+GGG | - | chr3_1:64242616-64242635 | Msa0368100:intron | 40.0% |
| GATTAATGGCCAGCTTTCTA+TGG | + | chr3_1:64243009-64243028 | None:intergenic | 40.0% | |
| CCCATGAAGATTGAGATTGT+TGG | - | chr3_1:64243349-64243368 | Msa0368100:CDS | 40.0% | |
| GTGAATGTCTCTGCTATGAA+TGG | - | chr3_1:64243403-64243422 | Msa0368100:CDS | 40.0% | |
| CAAGTGATGAGCAGATGTAT+AGG | + | chr3_1:64243510-64243529 | None:intergenic | 40.0% | |
| CTATACATCTGCTCATCACT+TGG | - | chr3_1:64243508-64243527 | Msa0368100:five_prime_UTR | 40.0% | |
| !! | ATTTTTGTATGGGGTGTTCC+AGG | - | chr3_1:64243747-64243766 | Msa0368100:intron | 40.0% |
| AGATCATGTTTGCATAGCCT+CGG | + | chr3_1:64244345-64244364 | None:intergenic | 40.0% | |
| GATTCCAACGCAGTTCAAAA+AGG | + | chr3_1:64244495-64244514 | None:intergenic | 40.0% | |
| AACTGCGTTGGAATCTTGTT+AGG | - | chr3_1:64244500-64244519 | Msa0368100:five_prime_UTR | 40.0% | |
| ACTGCGTTGGAATCTTGTTA+GGG | - | chr3_1:64244501-64244520 | Msa0368100:five_prime_UTR | 40.0% | |
| TAGGGGCTGAATGATTAAGT+TGG | - | chr3_1:64244519-64244538 | Msa0368100:five_prime_UTR | 40.0% | |
| GAGCTTGATGAAGATGACGA+AGG | + | chr3_1:64240327-64240346 | None:intergenic | 45.0% | |
| !! | TTATGGATCTGATTTGGGGG+AGG | - | chr3_1:64240588-64240607 | Msa0368100:intron | 45.0% |
| ! | TGTTGTGGGGTGTTCAATTG+GGG | - | chr3_1:64240857-64240876 | Msa0368100:intron | 45.0% |
| CGTCGGATATAACCCCAATT+AGG | + | chr3_1:64240925-64240944 | None:intergenic | 45.0% | |
| AATTGGGGTTATATCCGACG+TGG | - | chr3_1:64240925-64240944 | Msa0368100:intron | 45.0% | |
| ! | GCTACTCTAGATGATAACGC+CGG | - | chr3_1:64241082-64241101 | Msa0368100:intron | 45.0% |
| AAGTGCAATGGCTTCTTCCT+TGG | - | chr3_1:64241269-64241288 | Msa0368100:intron | 45.0% | |
| CCTTCTACCATTAACAGCAC+CGG | + | chr3_1:64241406-64241425 | None:intergenic | 45.0% | |
| GCTGTTAATGGTAGAAGGAC+TGG | - | chr3_1:64241408-64241427 | Msa0368100:CDS | 45.0% | |
| !! | CGCGAGTGTTGACATTAAGT+GGG | + | chr3_1:64241464-64241483 | None:intergenic | 45.0% |
| !! | CACGATTTTTGAGCTTGCCT+TGG | + | chr3_1:64241505-64241524 | None:intergenic | 45.0% |
| CAAGGCAAGCTCAAAAATCG+TGG | - | chr3_1:64241503-64241522 | Msa0368100:intron | 45.0% | |
| AAATCTTTGGCTGGTGTGTG+CGG | - | chr3_1:64241964-64241983 | Msa0368100:intron | 45.0% | |
| GACATGTTCTTCTGCCATTC+TGG | - | chr3_1:64242324-64242343 | Msa0368100:CDS | 45.0% | |
| CTTGAATTCCTGCAGCTCTA+AGG | + | chr3_1:64242427-64242446 | None:intergenic | 45.0% | |
| CTTAGAGCTGCAGGAATTCA+AGG | - | chr3_1:64242425-64242444 | Msa0368100:intron | 45.0% | |
| TGTCTTCATTGGTCACTCCT+CGG | + | chr3_1:64242490-64242509 | None:intergenic | 45.0% | |
| !! | CTGTTTCTAGCAAACCTCTC+TGG | - | chr3_1:64242557-64242576 | Msa0368100:intron | 45.0% |
| ! | CAGGAACTTTTCTCTGAGCT+TGG | - | chr3_1:64242615-64242634 | Msa0368100:intron | 45.0% |
| ! | GGAACTTTTCTCTGAGCTTG+GGG | - | chr3_1:64242617-64242636 | Msa0368100:intron | 45.0% |
| GGACACCCAACTGTAAGTAT+TGG | - | chr3_1:64242675-64242694 | Msa0368100:intron | 45.0% | |
| AACAATCCCCACCCAACAAT+TGG | + | chr3_1:64242950-64242969 | None:intergenic | 45.0% | |
| TCAGATCATAGGCCTCCAAA+TGG | - | chr3_1:64242980-64242999 | Msa0368100:intron | 45.0% | |
| TTCAGCTGAACCCTGTTACA+TGG | + | chr3_1:64243257-64243276 | None:intergenic | 45.0% | |
| TCTCTGCTATGAATGGACAG+AGG | - | chr3_1:64243410-64243429 | Msa0368100:CDS | 45.0% | |
| CTATGAATGGACAGAGGAAG+AGG | - | chr3_1:64243416-64243435 | Msa0368100:CDS | 45.0% | |
| CTGCGTTGGAATCTTGTTAG+GGG | - | chr3_1:64244502-64244521 | Msa0368100:five_prime_UTR | 45.0% | |
| !!! | TATTTTTTGTTTATTATTTT+TGG | - | chr3_1:64243846-64243865 | Msa0368100:intron | 5.0% |
| !! | CCGGTGCTGTTAATGGTAGA+AGG | - | chr3_1:64241403-64241422 | Msa0368100:CDS | 50.0% |
| !! | GGTAGAAGGACTGGTAATGG+TGG | - | chr3_1:64241417-64241436 | Msa0368100:CDS | 50.0% |
| GGAAGAACTGCTGTTCGTAG+AGG | - | chr3_1:64241438-64241457 | Msa0368100:CDS | 50.0% | |
| !! | GCGCGAGTGTTGACATTAAG+TGG | + | chr3_1:64241465-64241484 | None:intergenic | 50.0% |
| GTTGAGCATGAGCTTCTCCA+CGG | + | chr3_1:64241693-64241712 | None:intergenic | 50.0% | |
| TCTTGGGTCTGCGAATAGAC+TGG | + | chr3_1:64242370-64242389 | None:intergenic | 50.0% | |
| CTCTGCCATGCAAGAGTCTT+GGG | + | chr3_1:64242386-64242405 | None:intergenic | 50.0% | |
| ACTCTGCCATGCAAGAGTCT+TGG | + | chr3_1:64242387-64242406 | None:intergenic | 50.0% | |
| TGTCAAGAGAACGTCCAGAG+AGG | + | chr3_1:64242574-64242593 | None:intergenic | 50.0% | |
| ATCAACAGTCCGCACCCAAT+TGG | - | chr3_1:64242849-64242868 | Msa0368100:intron | 50.0% | |
| CAGCATTGCCTGTAACTGCA+CGG | - | chr3_1:64243380-64243399 | Msa0368100:CDS | 50.0% | |
| AGCATTGCCTGTAACTGCAC+GGG | - | chr3_1:64243381-64243400 | Msa0368100:CDS | 50.0% | |
| ACATTCACCCGTGCAGTTAC+AGG | + | chr3_1:64243391-64243410 | None:intergenic | 50.0% | |
| TCATCACTTGGAACTCCCTG+TGG | - | chr3_1:64243520-64243539 | Msa0368100:intron | 50.0% | |
| ! | TTTTACAGTTGGGGACGTCG+TGG | - | chr3_1:64244179-64244198 | Msa0368100:intron | 50.0% |
| TTGCATAGCCTCGGCATGAT+AGG | + | chr3_1:64244336-64244355 | None:intergenic | 50.0% | |
| ! | GTGGGGTGTTCAATTGGGGA+TGG | - | chr3_1:64240861-64240880 | Msa0368100:intron | 55.0% |
| AGAGCAGGAGTAACAGAGGC+AGG | - | chr3_1:64241316-64241335 | Msa0368100:CDS | 55.0% | |
| GAGCAGGAGTAACAGAGGCA+GGG | - | chr3_1:64241317-64241336 | Msa0368100:CDS | 55.0% | |
| AGCAGGAGTAACAGAGGCAG+GGG | - | chr3_1:64241318-64241337 | Msa0368100:CDS | 55.0% | |
| CACCTAGAGTCCCACTTCCA+CGG | + | chr3_1:64241371-64241390 | None:intergenic | 55.0% | |
| !! | AGGAGGACCGGTGCTGTTAA+TGG | - | chr3_1:64241396-64241415 | Msa0368100:CDS | 55.0% |
| GCAGACCCAAGACTCTTGCA+TGG | - | chr3_1:64242378-64242397 | Msa0368100:intron | 55.0% | |
| ! | GAGGATAGCCTTAGAGCTGC+AGG | - | chr3_1:64242416-64242435 | Msa0368100:intron | 55.0% |
| GGTCACTCCTCGGTCCAAAT+TGG | + | chr3_1:64242480-64242499 | None:intergenic | 55.0% | |
| AGGTCGAGGTCGTGGAAGAA+AGG | - | chr3_1:64244265-64244284 | Msa0368100:intron | 55.0% | |
| CGAGGTCGTGGAAGAAAGGA+TGG | - | chr3_1:64244269-64244288 | Msa0368100:intron | 55.0% | |
| GTCAGCTGAGCAGCTTGACA+AGG | - | chr3_1:64244301-64244320 | Msa0368100:intron | 55.0% | |
| ACTCGAGACCTATCATGCCG+AGG | - | chr3_1:64244325-64244344 | Msa0368100:intron | 55.0% | |
| AGTAACAGAGGCAGGGGCAG+AGG | - | chr3_1:64241324-64241343 | Msa0368100:CDS | 60.0% | |
| GGACGTGGCAAAGCCCTTTC+TGG | - | chr3_1:64241345-64241364 | Msa0368100:CDS | 60.0% | |
| CCCACTTCCACGGCCAGAAA+GGG | + | chr3_1:64241361-64241380 | None:intergenic | 60.0% | |
| ! | CCCTTTCTGGCCGTGGAAGT+GGG | - | chr3_1:64241358-64241377 | Msa0368100:CDS | 60.0% |
| TCCCACTTCCACGGCCAGAA+AGG | + | chr3_1:64241362-64241381 | None:intergenic | 60.0% | |
| CGTGGAAGTGGGACTCTAGG+TGG | - | chr3_1:64241369-64241388 | Msa0368100:CDS | 60.0% | |
| GGAAGTGGGACTCTAGGTGG+TGG | - | chr3_1:64241372-64241391 | Msa0368100:CDS | 60.0% | |
| !! | GTGGGACTCTAGGTGGTGGA+AGG | - | chr3_1:64241376-64241395 | Msa0368100:CDS | 60.0% |
| !! | GGACTCTAGGTGGTGGAAGG+AGG | - | chr3_1:64241379-64241398 | Msa0368100:CDS | 60.0% |
| !! | CTAGGTGGTGGAAGGAGGAC+CGG | - | chr3_1:64241384-64241403 | Msa0368100:CDS | 60.0% |
| ! | ATGGGGTGTTCCAGGCCTAG+AGG | - | chr3_1:64243755-64243774 | Msa0368100:intron | 60.0% |
| GGTCCTGCCATGCTGAATCG+TGG | - | chr3_1:64243791-64243810 | Msa0368100:intron | 60.0% | |
| GCACCACGATTCAGCATGGC+AGG | + | chr3_1:64243797-64243816 | None:intergenic | 60.0% | |
| GCCATGCTGAATCGTGGTGC+CGG | - | chr3_1:64243797-64243816 | Msa0368100:intron | 60.0% | |
| CCATGCTGAATCGTGGTGCC+GGG | - | chr3_1:64243798-64243817 | Msa0368100:intron | 60.0% | |
| TACAGTTGGGGACGTCGTGG+TGG | - | chr3_1:64244182-64244201 | Msa0368100:intron | 60.0% | |
| GGGACGTCGTGGTGGTTCAA+GGG | - | chr3_1:64244190-64244209 | Msa0368100:intron | 60.0% | |
| GGACGTCGTGGTGGTTCAAG+GGG | - | chr3_1:64244191-64244210 | Msa0368100:intron | 60.0% | |
| GTCGTGGTGGTTCAAGGGGT+GGG | - | chr3_1:64244195-64244214 | Msa0368100:intron | 60.0% | |
| TCGTGGTGGTTCAAGGGGTG+GGG | - | chr3_1:64244196-64244215 | Msa0368100:intron | 60.0% | |
| GACGGCAGCTGTACGCGGTT+TGG | - | chr3_1:64240162-64240181 | Msa0368100:three_prime_UTR | 65.0% | |
| ! | GGCAAAGCCCTTTCTGGCCG+TGG | - | chr3_1:64241351-64241370 | Msa0368100:CDS | 65.0% |
| ! | GCCCTTTCTGGCCGTGGAAG+TGG | - | chr3_1:64241357-64241376 | Msa0368100:CDS | 65.0% |
| GGCCGTGGAAGTGGGACTCT+AGG | - | chr3_1:64241366-64241385 | Msa0368100:CDS | 65.0% | |
| GGGTGTTCCAGGCCTAGAGG+TGG | - | chr3_1:64243758-64243777 | Msa0368100:intron | 65.0% | |
| TCCAGGCCTAGAGGTGGACG+AGG | - | chr3_1:64243764-64243783 | Msa0368100:intron | 65.0% | |
| ACCTCGTCCACCTCTAGGCC+TGG | + | chr3_1:64243768-64243787 | None:intergenic | 65.0% | |
| AGGCCTAGAGGTGGACGAGG+TGG | - | chr3_1:64243767-64243786 | Msa0368100:intron | 65.0% | |
| CCTCCACCTCGTCCACCTCT+AGG | + | chr3_1:64243773-64243792 | None:intergenic | 65.0% | |
| CCTAGAGGTGGACGAGGTGG+AGG | - | chr3_1:64243770-64243789 | Msa0368100:intron | 65.0% | |
| CCCGGCACCACGATTCAGCA+TGG | + | chr3_1:64243801-64243820 | None:intergenic | 65.0% | |
| GGGGACGTCGTGGTGGTTCA+AGG | - | chr3_1:64244189-64244208 | Msa0368100:intron | 65.0% | |
| CGTCGTGGTGGTTCAAGGGG+TGG | - | chr3_1:64244194-64244213 | Msa0368100:intron | 65.0% | |
| CGTGGTGGTTCAAGGGGTGG+GGG | - | chr3_1:64244197-64244216 | Msa0368100:intron | 65.0% | |
| GTGGTTCAAGGGGTGGGGGT+GGG | - | chr3_1:64244201-64244220 | Msa0368100:intron | 65.0% | |
| AGAGGCAGGGGCAGAGGACG+TGG | - | chr3_1:64241330-64241349 | Msa0368100:CDS | 70.0% | |
| GGTGGTTCAAGGGGTGGGGG+TGG | - | chr3_1:64244200-64244219 | Msa0368100:intron | 70.0% | |
| GACCTCCACCCCTGCCAGGA+CGG | + | chr3_1:64244250-64244269 | None:intergenic | 70.0% | |
| AGGGGTGGAGGTCGAGGTCG+TGG | - | chr3_1:64244257-64244276 | Msa0368100:intron | 70.0% | |
| ! | GGTGGGAGCGTGCGTGGACG+TGG | - | chr3_1:64244218-64244237 | Msa0368100:intron | 75.0% |
| AGCGTGCGTGGACGTGGCCG+AGG | - | chr3_1:64244224-64244243 | Msa0368100:intron | 75.0% | |
| TGGCCGAGGCCGTCCTGGCA+GGG | - | chr3_1:64244238-64244257 | Msa0368100:intron | 75.0% | |
| CACCCCTGCCAGGACGGCCT+CGG | + | chr3_1:64244244-64244263 | None:intergenic | 75.0% | |
| CCTCGACCTCCACCCCTGCC+AGG | + | chr3_1:64244254-64244273 | None:intergenic | 75.0% | |
| CCTGGCAGGGGTGGAGGTCG+AGG | - | chr3_1:64244251-64244270 | Msa0368100:intron | 75.0% | |
| !! | GGTGGGGGTGGGAGCGTGCG+TGG | - | chr3_1:64244212-64244231 | Msa0368100:intron | 80.0% |
| ! | GGACGTGGCCGAGGCCGTCC+TGG | - | chr3_1:64244233-64244252 | Msa0368100:intron | 80.0% |
| ! | GTGGCCGAGGCCGTCCTGGC+AGG | - | chr3_1:64244237-64244256 | Msa0368100:intron | 80.0% |
| ! | GGCCGAGGCCGTCCTGGCAG+GGG | - | chr3_1:64244239-64244258 | Msa0368100:intron | 80.0% |
| ! | CGAGGCCGTCCTGGCAGGGG+TGG | - | chr3_1:64244242-64244261 | Msa0368100:intron | 80.0% |
| ! | GGCCGTCCTGGCAGGGGTGG+AGG | - | chr3_1:64244245-64244264 | Msa0368100:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 64240160 | 64244589 | 64240160 | ID=Msa0368100;Name=Msa0368100 |
| chr3_1 | mRNA | 64240160 | 64244589 | 64240160 | ID=Msa0368100-mRNA-1;Parent=Msa0368100;Name=Msa0368100-mRNA-1;_AED=0.20;_eAED=0.20;_QI=281|1|1|1|0.83|0.71|7|228|285 |
| chr3_1 | exon | 64240160 | 64240562 | 64240160 | ID=Msa0368100-mRNA-1:exon:12840;Parent=Msa0368100-mRNA-1 |
| chr3_1 | exon | 64240930 | 64240980 | 64240930 | ID=Msa0368100-mRNA-1:exon:12839;Parent=Msa0368100-mRNA-1 |
| chr3_1 | exon | 64241297 | 64241484 | 64241297 | ID=Msa0368100-mRNA-1:exon:12838;Parent=Msa0368100-mRNA-1 |
| chr3_1 | exon | 64242063 | 64242131 | 64242063 | ID=Msa0368100-mRNA-1:exon:12837;Parent=Msa0368100-mRNA-1 |
| chr3_1 | exon | 64242235 | 64242378 | 64242235 | ID=Msa0368100-mRNA-1:exon:12836;Parent=Msa0368100-mRNA-1 |
| chr3_1 | exon | 64243243 | 64243527 | 64243243 | ID=Msa0368100-mRNA-1:exon:12835;Parent=Msa0368100-mRNA-1 |
| chr3_1 | exon | 64244363 | 64244589 | 64244363 | ID=Msa0368100-mRNA-1:exon:12834;Parent=Msa0368100-mRNA-1 |
| chr3_1 | five_prime_UTR | 64244363 | 64244589 | 64244363 | ID=Msa0368100-mRNA-1:five_prime_utr;Parent=Msa0368100-mRNA-1 |
| chr3_1 | five_prime_UTR | 64243474 | 64243527 | 64243474 | ID=Msa0368100-mRNA-1:five_prime_utr;Parent=Msa0368100-mRNA-1 |
| chr3_1 | CDS | 64243243 | 64243473 | 64243243 | ID=Msa0368100-mRNA-1:cds;Parent=Msa0368100-mRNA-1 |
| chr3_1 | CDS | 64242235 | 64242378 | 64242235 | ID=Msa0368100-mRNA-1:cds;Parent=Msa0368100-mRNA-1 |
| chr3_1 | CDS | 64242063 | 64242131 | 64242063 | ID=Msa0368100-mRNA-1:cds;Parent=Msa0368100-mRNA-1 |
| chr3_1 | CDS | 64241297 | 64241484 | 64241297 | ID=Msa0368100-mRNA-1:cds;Parent=Msa0368100-mRNA-1 |
| chr3_1 | CDS | 64240930 | 64240980 | 64240930 | ID=Msa0368100-mRNA-1:cds;Parent=Msa0368100-mRNA-1 |
| chr3_1 | CDS | 64240388 | 64240562 | 64240388 | ID=Msa0368100-mRNA-1:cds;Parent=Msa0368100-mRNA-1 |
| chr3_1 | three_prime_UTR | 64240160 | 64240387 | 64240160 | ID=Msa0368100-mRNA-1:three_prime_utr;Parent=Msa0368100-mRNA-1 |
| Gene Sequence |
| Protein sequence |
