Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0507060 | XP_003600719.1 | 96.907 | 291 | 3 | 2 | 1 | 285 | 1 | 291 | 0.0 | 543 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0507060 | sp|Q94EH8|THO4C_ARATH | 49.329 | 298 | 130 | 7 | 1 | 283 | 1 | 292 | 1.26e-64 | 207 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0507060 | G7J9D5 | 96.907 | 291 | 3 | 2 | 1 | 285 | 1 | 291 | 0.0 | 543 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0077370 | Msa0507060 | 0.808963 | 2.392563e-50 | -8.615850e-47 |
| Msa0186540 | Msa0507060 | 0.805534 | 1.274533e-49 | -8.615850e-47 |
| Msa0368100 | Msa0507060 | 0.904314 | 1.397391e-79 | -8.615850e-47 |
| Msa0507060 | Msa0769970 | 0.800288 | 1.546553e-48 | -8.615850e-47 |
| Msa0507060 | Msa0881530 | -0.836474 | 9.160876e-57 | -8.615850e-47 |
| Msa0507060 | Msa0982090 | -0.832595 | 8.645049e-56 | -8.615850e-47 |
| Msa0507060 | Msa1128280 | 0.800454 | 1.430154e-48 | -8.615850e-47 |
| Msa0507060 | Msa1382380 | -0.829003 | 6.565213e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0507060 | MtrunA17_Chr3g0110401 | 96.517 | 201 | 2 | 1 | 90 | 285 | 11 | 211 | 9.19e-137 | 384 |
| Msa0507060 | MtrunA17_Chr4g0031081 | 44.918 | 305 | 103 | 13 | 1 | 284 | 1 | 261 | 4.91e-48 | 160 |
| Msa0507060 | MtrunA17_Chr3g0110431 | 96.203 | 79 | 2 | 1 | 1 | 78 | 1 | 79 | 6.81e-41 | 136 |
| Msa0507060 | MtrunA17_Chr5g0438421 | 84.932 | 73 | 11 | 0 | 149 | 221 | 21 | 93 | 3.94e-36 | 125 |
| Msa0507060 | MtrunA17_Chr3g0145881 | 79.730 | 74 | 15 | 0 | 148 | 221 | 10 | 83 | 2.07e-33 | 119 |
| Msa0507060 | MtrunA17_Chr7g0223041 | 44.361 | 133 | 63 | 1 | 82 | 203 | 38 | 170 | 2.22e-29 | 113 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0507060 | AT5G37720.2 | 55.844 | 231 | 93 | 4 | 64 | 285 | 49 | 279 | 2.99e-68 | 213 |
| Msa0507060 | AT1G66260.2 | 49.329 | 298 | 130 | 7 | 1 | 283 | 1 | 292 | 1.28e-65 | 207 |
| Msa0507060 | AT1G66260.1 | 49.329 | 298 | 130 | 7 | 1 | 283 | 1 | 292 | 1.28e-65 | 207 |
| Msa0507060 | AT5G37720.1 | 65.563 | 151 | 48 | 2 | 64 | 210 | 49 | 199 | 1.45e-63 | 202 |
| Msa0507060 | AT5G59950.4 | 47.120 | 191 | 71 | 6 | 1 | 186 | 1 | 166 | 1.46e-42 | 145 |
| Msa0507060 | AT5G59950.1 | 39.310 | 290 | 124 | 7 | 1 | 285 | 1 | 243 | 2.19e-42 | 146 |
| Msa0507060 | AT5G59950.5 | 45.550 | 191 | 74 | 5 | 1 | 186 | 1 | 166 | 4.85e-42 | 145 |
| Msa0507060 | AT5G59950.3 | 40.000 | 290 | 120 | 8 | 1 | 285 | 1 | 241 | 3.20e-41 | 143 |
| Msa0507060 | AT5G02530.2 | 42.523 | 214 | 92 | 5 | 1 | 197 | 1 | 200 | 8.98e-39 | 138 |
| Msa0507060 | AT5G02530.1 | 42.523 | 214 | 92 | 5 | 1 | 197 | 1 | 200 | 9.82e-39 | 137 |
| Msa0507060 | AT5G59950.2 | 45.960 | 198 | 83 | 2 | 89 | 285 | 3 | 177 | 1.63e-38 | 134 |
Find 116 sgRNAs with CRISPR-Local
Find 343 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGACGTGGCAAAGCCCTTTC+TGG | 0.247048 | 3_4:+53948426 | Msa0507060:CDS |
| AAAGTTGTATGTTTCCAATT+TGG | 0.253815 | 3_4:+53949544 | Msa0507060:CDS |
| ATGACGAAGGCAGGAAAATA+AGG | 0.284938 | 3_4:-53947390 | None:intergenic |
| GTGGCCGAGGCCGTCCTGGC+AGG | 0.287645 | 3_4:+53951340 | Msa0507060:CDS |
| ACGATATAACAATGTGCTTT+TGG | 0.299918 | 3_4:+53950427 | Msa0507060:CDS |
| AACTGCGTTGGAATCTTGTT+AGG | 0.313832 | 3_4:+53951603 | Msa0507060:three_prime_UTR |
| GATGAGAGAAAATTTAGATT+TGG | 0.320680 | 3_4:-53947336 | None:intergenic |
| GGGGACGTCGTGGTGGTTCA+AGG | 0.325831 | 3_4:+53951292 | Msa0507060:CDS |
| CTCTGCCATGCAAGAGTCTT+GGG | 0.329566 | 3_4:-53949464 | None:intergenic |
| AGGAGGACCGGTGCTGTTAA+TGG | 0.346085 | 3_4:+53948477 | Msa0507060:CDS |
| GGTCACTCCTCGGTCCAAAT+TGG | 0.356780 | 3_4:-53949558 | None:intergenic |
| CAACTTCAATTCATATAAAC+TGG | 0.358573 | 3_4:-53951660 | None:intergenic |
| CGTCGTGGTGGTTCAAGGGG+TGG | 0.364327 | 3_4:+53951297 | Msa0507060:CDS |
| TCCAACAATCTCAATCTTCA+TGG | 0.365558 | 3_4:-53950459 | None:intergenic |
| CTTGAATTCCTGCAGCTCTA+AGG | 0.366232 | 3_4:-53949505 | None:intergenic |
| GTCGTGGTGGTTCAAGGGGT+GGG | 0.367319 | 3_4:+53951298 | Msa0507060:CDS |
| ACATTCACCCGTGCAGTTAC+AGG | 0.376549 | 3_4:-53950497 | None:intergenic |
| TGTCAATTTAAAGTGATGTA+AGG | 0.380251 | 3_4:-53947288 | None:intergenic |
| CCCATGAAGATTGAGATTGT+TGG | 0.383677 | 3_4:+53950458 | Msa0507060:CDS |
| GATTCCAACGCAGTTCAAAA+AGG | 0.385128 | 3_4:-53951595 | None:intergenic |
| TCGTGGTGGTTCAAGGGGTG+GGG | 0.385349 | 3_4:+53951299 | Msa0507060:CDS |
| CTATACCCTTATGTCTTCAT+TGG | 0.385839 | 3_4:-53949579 | None:intergenic |
| CTTAGAGCTGCAGGAATTCA+AGG | 0.388697 | 3_4:+53949506 | Msa0507060:CDS |
| GACGGCAGCTGTACGCGGTT+TGG | 0.390001 | 3_4:+53947241 | Msa0507060:five_prime_UTR |
| GCCCTTTCTGGCCGTGGAAG+TGG | 0.394657 | 3_4:+53948438 | Msa0507060:CDS |
| GGCCGTCCTGGCAGGGGTGG+AGG | 0.402653 | 3_4:+53951348 | Msa0507060:CDS |
| CACCCCTGCCAGGACGGCCT+CGG | 0.413054 | 3_4:-53951344 | None:intergenic |
| GGACGTGGCCGAGGCCGTCC+TGG | 0.415266 | 3_4:+53951336 | Msa0507060:CDS |
| CGTGGTGGTTCAAGGGGTGG+GGG | 0.425160 | 3_4:+53951300 | Msa0507060:CDS |
| GGTGGGAGCGTGCGTGGACG+TGG | 0.428703 | 3_4:+53951321 | Msa0507060:CDS |
| AGTAACAGAGGCAGGGGCAG+AGG | 0.432228 | 3_4:+53948405 | Msa0507060:CDS |
| ACTGCGTTGGAATCTTGTTA+GGG | 0.438947 | 3_4:+53951604 | Msa0507060:three_prime_UTR |
| TAAGGGTTTCAAATTGAAGA+AGG | 0.440838 | 3_4:-53947372 | None:intergenic |
| GCCATGCTGAATCGTGGTGC+CGG | 0.444836 | 3_4:+53950901 | Msa0507060:CDS |
| TGGCCGAGGCCGTCCTGGCA+GGG | 0.445332 | 3_4:+53951341 | Msa0507060:CDS |
| GGCAAAGCCCTTTCTGGCCG+TGG | 0.445737 | 3_4:+53948432 | Msa0507060:CDS |
| AGGGGTGGAGGTCGAGGTCG+TGG | 0.447345 | 3_4:+53951360 | Msa0507060:CDS |
| GCGCGAGTGTTGACATTAAG+TGG | 0.449989 | 3_4:-53948543 | None:intergenic |
| CCTGGCAGGGGTGGAGGTCG+AGG | 0.450413 | 3_4:+53951354 | Msa0507060:CDS |
| TGCTCTTAATTCTATCATCA+AGG | 0.451660 | 3_4:-53948380 | None:intergenic |
| TCCCACTTCCACGGCCAGAA+AGG | 0.454152 | 3_4:-53948440 | None:intergenic |
| GGGACGTCGTGGTGGTTCAA+GGG | 0.454817 | 3_4:+53951293 | Msa0507060:CDS |
| CATTGCACTTGCAATAAAAC+AGG | 0.458982 | 3_4:-53948337 | None:intergenic |
| GAGTGACCAATGAAGACATA+AGG | 0.464791 | 3_4:+53949573 | Msa0507060:CDS |
| GGACGTCGTGGTGGTTCAAG+GGG | 0.465616 | 3_4:+53951294 | Msa0507060:CDS |
| TTGCATAGCCTCGGCATGAT+AGG | 0.466574 | 3_4:-53951436 | None:intergenic |
| AGAGCAGGAGTAACAGAGGC+AGG | 0.466694 | 3_4:+53948397 | Msa0507060:CDS |
| ACTCTGCCATGCAAGAGTCT+TGG | 0.467214 | 3_4:-53949465 | None:intergenic |
| GGCCGAGGCCGTCCTGGCAG+GGG | 0.467258 | 3_4:+53951342 | Msa0507060:CDS |
| TTGATGAAGATGACGAAGGC+AGG | 0.475734 | 3_4:-53947399 | None:intergenic |
| ACATTACTAAAATTTCTTGA+AGG | 0.476283 | 3_4:+53948307 | Msa0507060:five_prime_UTR |
| AGAGGCAGGGGCAGAGGACG+TGG | 0.476702 | 3_4:+53948411 | Msa0507060:CDS |
| CCCTTTCTGGCCGTGGAAGT+GGG | 0.477499 | 3_4:+53948439 | Msa0507060:CDS |
| AGCGTGCGTGGACGTGGCCG+AGG | 0.483857 | 3_4:+53951327 | Msa0507060:CDS |
| AAGTGCAATGGCTTCTTCCT+TGG | 0.487333 | 3_4:+53948350 | Msa0507060:exon |
| CCTCGACCTCCACCCCTGCC+AGG | 0.492742 | 3_4:-53951354 | None:intergenic |
| ACAGCGAAGTGAAATATTCA+AGG | 0.494465 | 3_4:-53951557 | None:intergenic |
| CTATGAATGGACAGAGGAAG+AGG | 0.497841 | 3_4:+53950525 | Msa0507060:CDS |
| TGTCTTCATTGGTCACTCCT+CGG | 0.500657 | 3_4:-53949568 | None:intergenic |
| AGCAGGAGTAACAGAGGCAG+GGG | 0.505578 | 3_4:+53948399 | Msa0507060:CDS |
| CCTAGAGGTGGACGAGGTGG+AGG | 0.505753 | 3_4:+53950874 | Msa0507060:CDS |
| CCCACTTCCACGGCCAGAAA+GGG | 0.509644 | 3_4:-53948439 | None:intergenic |
| CGAGGCCGTCCTGGCAGGGG+TGG | 0.510022 | 3_4:+53951345 | Msa0507060:CDS |
| CCTCCACCTCGTCCACCTCT+AGG | 0.512884 | 3_4:-53950874 | None:intergenic |
| GAGGATAGCCTTAGAGCTGC+AGG | 0.514544 | 3_4:+53949497 | Msa0507060:CDS |
| GCACCACGATTCAGCATGGC+AGG | 0.515986 | 3_4:-53950898 | None:intergenic |
| GTCAATTTAAAGTGATGTAA+GGG | 0.516871 | 3_4:-53947287 | None:intergenic |
| ACCGCGTACAGCTGCCGTCA+TGG | 0.519335 | 3_4:-53947237 | None:intergenic |
| CCAACAATCTCAATCTTCAT+GGG | 0.522798 | 3_4:-53950458 | None:intergenic |
| AGGTCGAGGTCGTGGAAGAA+AGG | 0.524779 | 3_4:+53951368 | Msa0507060:CDS |
| TGACGAAGGCAGGAAAATAA+GGG | 0.529716 | 3_4:-53947389 | None:intergenic |
| GGCCGTGGAAGTGGGACTCT+AGG | 0.534118 | 3_4:+53948447 | Msa0507060:CDS |
| CACCTAGAGTCCCACTTCCA+CGG | 0.534143 | 3_4:-53948449 | None:intergenic |
| CCATGCTGAATCGTGGTGCC+GGG | 0.534164 | 3_4:+53950902 | Msa0507060:CDS |
| GTGAATGTCTCTGCTATGAA+TGG | 0.536430 | 3_4:+53950512 | Msa0507060:CDS |
| GTCAGCTGAGCAGCTTGACA+AGG | 0.536838 | 3_4:+53951404 | Msa0507060:CDS |
| CCGGTGCTGTTAATGGTAGA+AGG | 0.539937 | 3_4:+53948484 | Msa0507060:CDS |
| CGAGGTCGTGGAAGAAAGGA+TGG | 0.540568 | 3_4:+53951372 | Msa0507060:CDS |
| AATGGTAGAAGGACTGGTAA+TGG | 0.546415 | 3_4:+53948495 | Msa0507060:CDS |
| ATGGCAGAGTGATTTGTTTG+AGG | 0.547039 | 3_4:+53949478 | Msa0507060:CDS |
| CTAGGTGGTGGAAGGAGGAC+CGG | 0.547971 | 3_4:+53948465 | Msa0507060:CDS |
| GCTGTTAATGGTAGAAGGAC+TGG | 0.551681 | 3_4:+53948489 | Msa0507060:CDS |
| GTGGGACTCTAGGTGGTGGA+AGG | 0.552674 | 3_4:+53948457 | Msa0507060:CDS |
| TAGGGGCTGAATGATTAAGT+TGG | 0.553146 | 3_4:+53951622 | Msa0507060:three_prime_UTR |
| AGTGACCAATGAAGACATAA+GGG | 0.556774 | 3_4:+53949574 | Msa0507060:CDS |
| GGACTCTAGGTGGTGGAAGG+AGG | 0.558453 | 3_4:+53948460 | Msa0507060:CDS |
| GGTAGAAGGACTGGTAATGG+TGG | 0.564423 | 3_4:+53948498 | Msa0507060:CDS |
| AGATCATGTTTGCATAGCCT+CGG | 0.566736 | 3_4:-53951445 | None:intergenic |
| GCTCTTAATTCTATCATCAA+GGG | 0.571802 | 3_4:-53948379 | None:intergenic |
| GGAAGTGGGACTCTAGGTGG+TGG | 0.577089 | 3_4:+53948453 | Msa0507060:CDS |
| GACCTCCACCCCTGCCAGGA+CGG | 0.580790 | 3_4:-53951350 | None:intergenic |
| AGCATTGCCTGTAACTGCAC+GGG | 0.581089 | 3_4:+53950490 | Msa0507060:CDS |
| CGTGGAAGTGGGACTCTAGG+TGG | 0.581306 | 3_4:+53948450 | Msa0507060:CDS |
| GAGCAGGAGTAACAGAGGCA+GGG | 0.585529 | 3_4:+53948398 | Msa0507060:CDS |
| CAGCATTGCCTGTAACTGCA+CGG | 0.587109 | 3_4:+53950489 | Msa0507060:CDS |
| ATCATCAAGGGAAATATCCA+AGG | 0.590712 | 3_4:-53948367 | None:intergenic |
| TACAGTTGGGGACGTCGTGG+TGG | 0.603932 | 3_4:+53951285 | Msa0507060:intron |
| TTGATGATAGAATTAAGAGC+AGG | 0.604101 | 3_4:+53948382 | Msa0507060:CDS |
| ATGGGGTGTTCCAGGCCTAG+AGG | 0.607004 | 3_4:+53950859 | Msa0507060:intron |
| GGGTGTTCCAGGCCTAGAGG+TGG | 0.613278 | 3_4:+53950862 | Msa0507060:intron |
| TCCAGGCCTAGAGGTGGACG+AGG | 0.613446 | 3_4:+53950868 | Msa0507060:intron |
| ATTAAGAGCAGGAGTAACAG+AGG | 0.614326 | 3_4:+53948393 | Msa0507060:CDS |
| GTCATCTTATGCTATTGCCA+AGG | 0.614785 | 3_4:+53948566 | Msa0507060:CDS |
| TATGTTTCCAATTTGGACCG+AGG | 0.619441 | 3_4:+53949551 | Msa0507060:CDS |
| CCTTCTACCATTAACAGCAC+CGG | 0.619751 | 3_4:-53948484 | None:intergenic |
| AGGCCTAGAGGTGGACGAGG+TGG | 0.624405 | 3_4:+53950871 | Msa0507060:intron |
| TCCATGACGGCAGCTGTACG+CGG | 0.625482 | 3_4:+53947236 | None:intergenic |
| CCCGGCACCACGATTCAGCA+TGG | 0.628285 | 3_4:-53950902 | None:intergenic |
| CGCGAGTGTTGACATTAAGT+GGG | 0.629787 | 3_4:-53948542 | None:intergenic |
| CTGCGTTGGAATCTTGTTAG+GGG | 0.635042 | 3_4:+53951605 | Msa0507060:three_prime_UTR |
| GGAAGAACTGCTGTTCGTAG+AGG | 0.640179 | 3_4:+53948519 | Msa0507060:CDS |
| GGTCCTGCCATGCTGAATCG+TGG | 0.653506 | 3_4:+53950895 | Msa0507060:CDS |
| GCAGACCCAAGACTCTTGCA+TGG | 0.659828 | 3_4:+53949459 | Msa0507060:CDS |
| ACTCGAGACCTATCATGCCG+AGG | 0.676986 | 3_4:+53951428 | Msa0507060:CDS |
| GAGCTTGATGAAGATGACGA+AGG | 0.708989 | 3_4:-53947403 | None:intergenic |
| TCTCTGCTATGAATGGACAG+AGG | 0.726591 | 3_4:+53950519 | Msa0507060:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTGTAAATTTAACTTATAA+TGG | + | chr3_4:53950978-53950997 | Msa0507060:intron | 10.0% |
| !!! | AAATTGTGATTTTTTAAAGT+TGG | + | chr3_4:53947841-53947860 | Msa0507060:intron | 15.0% |
| !! | TTTGTTTAATAATACCTAAT+TGG | + | chr3_4:53947983-53948002 | Msa0507060:intron | 15.0% |
| !! | TTGTTTAATAATACCTAATT+GGG | + | chr3_4:53947984-53948003 | Msa0507060:intron | 15.0% |
| !!! | TAATAAAATATAACTTGTCA+CGG | - | chr3_4:53948090-53948109 | None:intergenic | 15.0% |
| !!! | ATTAAATTGTTAATTTTGCA+GGG | + | chr3_4:53948282-53948301 | Msa0507060:intron | 15.0% |
| !! | AAAAATCATATAACTAAAAG+TGG | + | chr3_4:53948971-53948990 | Msa0507060:intron | 15.0% |
| !! | AAAATCATATAACTAAAAGT+GGG | + | chr3_4:53948972-53948991 | Msa0507060:intron | 15.0% |
| !!! | ATATTGTTATTGTTTTAATC+TGG | + | chr3_4:53949325-53949344 | Msa0507060:intron | 15.0% |
| !!! | TATTGTTATTGTTTTAATCT+GGG | + | chr3_4:53949326-53949345 | Msa0507060:intron | 15.0% |
| !! | TTAGTTTATAATTTCCAATT+GGG | - | chr3_4:53949903-53949922 | None:intergenic | 15.0% |
| !!! | TTTAGTTTATAATTTCCAAT+TGG | - | chr3_4:53949904-53949923 | None:intergenic | 15.0% |
| !!! | AGTAAATATTATTTTGTGAA+TGG | + | chr3_4:53950716-53950735 | Msa0507060:intron | 15.0% |
| !!! | ACTTATTTACATTTTTGTAT+GGG | + | chr3_4:53950841-53950860 | Msa0507060:intron | 15.0% |
| !!! | CTTTCTTTAAATATTTTGAA+TGG | + | chr3_4:53951176-53951195 | Msa0507060:intron | 15.0% |
| !! | GATAGAAAAAAATCTCAATT+TGG | - | chr3_4:53947435-53947454 | None:intergenic | 20.0% |
| !! | AGATAAAAAAATTCAATACC+TGG | - | chr3_4:53947465-53947484 | None:intergenic | 20.0% |
| !!! | TGAATCGATGATTTTTTTAT+GGG | + | chr3_4:53947554-53947573 | Msa0507060:intron | 20.0% |
| !!! | GATTTTTTAAAGTTGGATTA+TGG | + | chr3_4:53947848-53947867 | Msa0507060:intron | 20.0% |
| !!! | TGTTTGAAAAATTGTGATTT+TGG | + | chr3_4:53947904-53947923 | Msa0507060:intron | 20.0% |
| !! | TGTTTAATAATACCTAATTG+GGG | + | chr3_4:53947985-53948004 | Msa0507060:intron | 20.0% |
| !!! | GATTAAATTGTTAATTTTGC+AGG | + | chr3_4:53948281-53948300 | Msa0507060:intron | 20.0% |
| !! | ACATTACTAAAATTTCTTGA+AGG | + | chr3_4:53948307-53948326 | Msa0507060:five_prime_UTR | 20.0% |
| !! | ACTAATAATAAAAGTAGTTC+CGG | - | chr3_4:53948703-53948722 | None:intergenic | 20.0% |
| !! | AAATCATATAACTAAAAGTG+GGG | + | chr3_4:53948973-53948992 | Msa0507060:intron | 20.0% |
| !!! | ATTGTTATTGTTTTAATCTG+GGG | + | chr3_4:53949327-53949346 | Msa0507060:intron | 20.0% |
| !!! | GAAGAAGTAAATAACTTTTT+TGG | + | chr3_4:53949373-53949392 | Msa0507060:intron | 20.0% |
| !! | TTAGGTTATAATATCCAATT+GGG | - | chr3_4:53949975-53949994 | None:intergenic | 20.0% |
| !!! | TTTAGGTTATAATATCCAAT+TGG | - | chr3_4:53949976-53949995 | None:intergenic | 20.0% |
| !! | TATACACTAAAATGTGAAAA+AGG | - | chr3_4:53950032-53950051 | None:intergenic | 20.0% |
| !!! | CATTTTCTCAAAACAATTAA+TGG | - | chr3_4:53950132-53950151 | None:intergenic | 20.0% |
| !!! | AAACAGTCTTTAAATGTTTT+GGG | + | chr3_4:53950199-53950218 | Msa0507060:intron | 20.0% |
| !!! | CACTTATTTACATTTTTGTA+TGG | + | chr3_4:53950840-53950859 | Msa0507060:intron | 20.0% |
| !!! | CTTATTTACATTTTTGTATG+GGG | + | chr3_4:53950842-53950861 | Msa0507060:intron | 20.0% |
| !!! | TCATTGTTATTTTTACAGTT+GGG | + | chr3_4:53951272-53951291 | Msa0507060:intron | 20.0% |
| !!! | TTTTAGTCAAAATATGCTAT+TGG | + | chr3_4:53951493-53951512 | Msa0507060:three_prime_UTR | 20.0% |
| !! | GTCAATTTAAAGTGATGTAA+GGG | - | chr3_4:53947290-53947309 | None:intergenic | 25.0% |
| !! | TGTCAATTTAAAGTGATGTA+AGG | - | chr3_4:53947291-53947310 | None:intergenic | 25.0% |
| ! | GATGAGAGAAAATTTAGATT+TGG | - | chr3_4:53947339-53947358 | None:intergenic | 25.0% |
| !! | TCAAATTGAAGAAGGTTTTA+GGG | - | chr3_4:53947367-53947386 | None:intergenic | 25.0% |
| !! | TTCAAATTGAAGAAGGTTTT+AGG | - | chr3_4:53947368-53947387 | None:intergenic | 25.0% |
| ! | AGAAAAAAATCTCAATTTGG+AGG | - | chr3_4:53947432-53947451 | None:intergenic | 25.0% |
| ! | TAAAAAAATTCAATACCTGG+TGG | - | chr3_4:53947462-53947481 | None:intergenic | 25.0% |
| !!! | GTGAATCGATGATTTTTTTA+TGG | + | chr3_4:53947553-53947572 | Msa0507060:intron | 25.0% |
| !!! | GATGATTTTTTTATGGGATT+GGG | + | chr3_4:53947560-53947579 | Msa0507060:intron | 25.0% |
| !!! | ATGATTTTTTTATGGGATTG+GGG | + | chr3_4:53947561-53947580 | Msa0507060:intron | 25.0% |
| ! | TTGTGAATAGTGTAGAATTA+TGG | + | chr3_4:53947646-53947665 | Msa0507060:intron | 25.0% |
| ! | TAGAATTATGGATCTGATTT+GGG | + | chr3_4:53947658-53947677 | Msa0507060:intron | 25.0% |
| ! | TTAGGTTATAAATCGTTATC+TGG | + | chr3_4:53947713-53947732 | Msa0507060:intron | 25.0% |
| ! | AAAGTTGGATTATGGTTATA+TGG | + | chr3_4:53947856-53947875 | Msa0507060:intron | 25.0% |
| !!! | TGATTTTGGAATTTTGTTGT+GGG | + | chr3_4:53947918-53947937 | Msa0507060:intron | 25.0% |
| !!! | AATATTTTCAAGTGAATCTC+CGG | + | chr3_4:53948038-53948057 | Msa0507060:intron | 25.0% |
| !! | TTTGAAGAAATAACTTGTCA+CGG | - | chr3_4:53948123-53948142 | None:intergenic | 25.0% |
| ! | TTTCTTCAAATTATGCTATC+TGG | + | chr3_4:53948133-53948152 | Msa0507060:intron | 25.0% |
| ! | ATATAAGACTCATATAAGAC+CGG | - | chr3_4:53948179-53948198 | None:intergenic | 25.0% |
| ! | ATACTGAATCATCTCATTAA+TGG | - | chr3_4:53948660-53948679 | None:intergenic | 25.0% |
| !! | TACTTTTATTATTAGTTCCG+TGG | + | chr3_4:53948707-53948726 | Msa0507060:intron | 25.0% |
| !!! | TTGTTTGCTTTTGTTTTTGA+GGG | + | chr3_4:53948840-53948859 | Msa0507060:intron | 25.0% |
| !! | TCATTAGGTGATTTTCAAAA+TGG | + | chr3_4:53948930-53948949 | Msa0507060:intron | 25.0% |
| ! | CTAATTGTTTCATTAAGATG+AGG | + | chr3_4:53949015-53949034 | Msa0507060:intron | 25.0% |
| ! | CAATATTAATGAAGTAGATC+CGG | - | chr3_4:53949311-53949330 | None:intergenic | 25.0% |
| ! | AAAGTTGTATGTTTCCAATT+TGG | + | chr3_4:53949544-53949563 | Msa0507060:CDS | 25.0% |
| ! | AAATCCAAATACTTACAGTT+GGG | - | chr3_4:53949764-53949783 | None:intergenic | 25.0% |
| ! | AAAATCCAAATACTTACAGT+TGG | - | chr3_4:53949765-53949784 | None:intergenic | 25.0% |
| ! | ACTAATTTCTTATCTGTTTG+AGG | + | chr3_4:53949833-53949852 | Msa0507060:intron | 25.0% |
| !!! | CCTCATAAGAAATTAGTTTT+AGG | - | chr3_4:53949993-53950012 | None:intergenic | 25.0% |
| ! | CCTAAAACTAATTTCTTATG+AGG | + | chr3_4:53949990-53950009 | Msa0507060:intron | 25.0% |
| ! | AGTGTATAATTTCCAATTGT+TGG | + | chr3_4:53950044-53950063 | Msa0507060:intron | 25.0% |
| ! | GTGTATAATTTCCAATTGTT+GGG | + | chr3_4:53950045-53950064 | Msa0507060:intron | 25.0% |
| ! | CAAAACATTTAAAGACTGTT+TGG | - | chr3_4:53950200-53950219 | None:intergenic | 25.0% |
| !! | CAAACAGTCTTTAAATGTTT+TGG | + | chr3_4:53950198-53950217 | Msa0507060:intron | 25.0% |
| ! | TTGTTTAAAAAATCACCACA+GGG | - | chr3_4:53950647-53950666 | None:intergenic | 25.0% |
| ! | TTTGTTTAAAAAATCACCAC+AGG | - | chr3_4:53950648-53950667 | None:intergenic | 25.0% |
| ! | AACAAAAGTTGAACTGTATT+TGG | + | chr3_4:53950662-53950681 | Msa0507060:intron | 25.0% |
| ! | AAAATAATATTTACTCCCTC+GGG | - | chr3_4:53950711-53950730 | None:intergenic | 25.0% |
| ! | CAAAATAATATTTACTCCCT+CGG | - | chr3_4:53950712-53950731 | None:intergenic | 25.0% |
| ! | TTGATCTAGTAGTTTAGATA+TGG | - | chr3_4:53950755-53950774 | None:intergenic | 25.0% |
| ! | TCTTATGCATTTGATTATGA+TGG | + | chr3_4:53951045-53951064 | Msa0507060:intron | 25.0% |
| ! | CTATAGAAAATTTCCCATTT+AGG | + | chr3_4:53951121-53951140 | Msa0507060:intron | 25.0% |
| ! | TAATATATGCCAACCTAAAT+GGG | - | chr3_4:53951137-53951156 | None:intergenic | 25.0% |
| ! | TTAATATATGCCAACCTAAA+TGG | - | chr3_4:53951138-53951157 | None:intergenic | 25.0% |
| ! | ACTGTAAAAATAACAATGAG+AGG | - | chr3_4:53951271-53951290 | None:intergenic | 25.0% |
| !!! | CTCATTGTTATTTTTACAGT+TGG | + | chr3_4:53951271-53951290 | Msa0507060:intron | 25.0% |
| !!! | CATTGTTATTTTTACAGTTG+GGG | + | chr3_4:53951273-53951292 | Msa0507060:intron | 25.0% |
| ! | CAACTTCAATTCATATAAAC+TGG | - | chr3_4:53951663-53951682 | None:intergenic | 25.0% |
| TAAGGGTTTCAAATTGAAGA+AGG | - | chr3_4:53947375-53947394 | None:intergenic | 30.0% | |
| TTTCCAAATTGAGATTTCGA+TGG | + | chr3_4:53947498-53947517 | Msa0507060:intron | 30.0% | |
| TTCCAAATTGAGATTTCGAT+GGG | + | chr3_4:53947499-53947518 | Msa0507060:intron | 30.0% | |
| !!! | GGTTTTTTTTTGCTGTGATT+GGG | + | chr3_4:53947520-53947539 | Msa0507060:intron | 30.0% |
| !!! | GTTTTTTTTTGCTGTGATTG+GGG | + | chr3_4:53947521-53947540 | Msa0507060:intron | 30.0% |
| !!! | CGATGATTTTTTTATGGGAT+TGG | + | chr3_4:53947559-53947578 | Msa0507060:intron | 30.0% |
| GTAGAATTATGGATCTGATT+TGG | + | chr3_4:53947657-53947676 | Msa0507060:intron | 30.0% | |
| ! | AGAATTATGGATCTGATTTG+GGG | + | chr3_4:53947659-53947678 | Msa0507060:intron | 30.0% |
| !! | GCTTTGATCTAATGCTTTTT+AGG | + | chr3_4:53947695-53947714 | Msa0507060:intron | 30.0% |
| GGTTGCTAATTGTTGAAATT+TGG | + | chr3_4:53947734-53947753 | Msa0507060:intron | 30.0% | |
| TGCTAATTGTTGAAATTTGG+AGG | + | chr3_4:53947737-53947756 | Msa0507060:intron | 30.0% | |
| AATTGTTGAAATTTGGAGGT+TGG | + | chr3_4:53947741-53947760 | Msa0507060:intron | 30.0% | |
| AGGTTGGATGATTTATATGA+AGG | + | chr3_4:53947757-53947776 | Msa0507060:intron | 30.0% | |
| !!! | GGTTATATGGATTTTGAGTT+TGG | + | chr3_4:53947869-53947888 | Msa0507060:intron | 30.0% |
| !!! | GTGATTTTGGAATTTTGTTG+TGG | + | chr3_4:53947917-53947936 | Msa0507060:intron | 30.0% |
| !!! | GATTTTGGAATTTTGTTGTG+GGG | + | chr3_4:53947919-53947938 | Msa0507060:intron | 30.0% |
| TACAAAACTTAAATCCACGT+CGG | - | chr3_4:53948017-53948036 | None:intergenic | 30.0% | |
| !!! | ATATTTTCAAGTGAATCTCC+GGG | + | chr3_4:53948039-53948058 | Msa0507060:intron | 30.0% |
| TCTACATCCTTGAGTAATAT+TGG | + | chr3_4:53948238-53948257 | Msa0507060:intron | 30.0% | |
| CTACATCCTTGAGTAATATT+GGG | + | chr3_4:53948239-53948258 | Msa0507060:intron | 30.0% | |
| TGAATACCCAATATTACTCA+AGG | - | chr3_4:53948248-53948267 | None:intergenic | 30.0% | |
| AATATTGGGTATTCATGTAC+AGG | + | chr3_4:53948253-53948272 | Msa0507060:intron | 30.0% | |
| GCTCTTAATTCTATCATCAA+GGG | - | chr3_4:53948382-53948401 | None:intergenic | 30.0% | |
| TGCTCTTAATTCTATCATCA+AGG | - | chr3_4:53948383-53948402 | None:intergenic | 30.0% | |
| ! | TTGATGATAGAATTAAGAGC+AGG | + | chr3_4:53948382-53948401 | Msa0507060:CDS | 30.0% |
| ! | TCATCTCATTAATGGACATA+GGG | - | chr3_4:53948652-53948671 | None:intergenic | 30.0% |
| ! | ATCATCTCATTAATGGACAT+AGG | - | chr3_4:53948653-53948672 | None:intergenic | 30.0% |
| ATAGAAAACTCAAAAGCAAC+CGG | + | chr3_4:53948681-53948700 | Msa0507060:intron | 30.0% | |
| !!! | TTGCTTTTGAGTTTCTATCA+CGG | - | chr3_4:53948727-53948746 | None:intergenic | 30.0% |
| CACTATGAAACTATGCAAAA+TGG | - | chr3_4:53948796-53948815 | None:intergenic | 30.0% | |
| !!! | GTTGTTTGCTTTTGTTTTTG+AGG | + | chr3_4:53948839-53948858 | Msa0507060:intron | 30.0% |
| ! | AATCCTAGCATATTTTCTGA+AGG | + | chr3_4:53948903-53948922 | Msa0507060:intron | 30.0% |
| ATGAGGTGACTTTAAATCTT+TGG | + | chr3_4:53949032-53949051 | Msa0507060:intron | 30.0% | |
| AAGAGGATCCAATAAAACAA+AGG | - | chr3_4:53949072-53949091 | None:intergenic | 30.0% | |
| CTATGTTAAAGATGGCAAAT+TGG | - | chr3_4:53949241-53949260 | None:intergenic | 30.0% | |
| TCAGTGTTCTATGTTAAAGA+TGG | - | chr3_4:53949249-53949268 | None:intergenic | 30.0% | |
| TTTGAATATATCACCATGAC+CGG | + | chr3_4:53949289-53949308 | Msa0507060:intron | 30.0% | |
| TCTTCAAGATTTATCAGAAC+AGG | - | chr3_4:53949358-53949377 | None:intergenic | 30.0% | |
| ! | TGAAACTTTATTTGACACTC+AGG | + | chr3_4:53949677-53949696 | Msa0507060:intron | 30.0% |
| GCTGTTCATTATGACAAAAA+TGG | + | chr3_4:53949735-53949754 | Msa0507060:CDS | 30.0% | |
| ! | TTTTGTGATGTGAAAAAGAC+TGG | - | chr3_4:53949871-53949890 | None:intergenic | 30.0% |
| TTATAATTTCCAATTGGGTG+TGG | - | chr3_4:53949898-53949917 | None:intergenic | 30.0% | |
| TATAATTTCCAATTGTTGGG+TGG | + | chr3_4:53950048-53950067 | Msa0507060:intron | 30.0% | |
| ATAATTTCCAATTGTTGGGT+GGG | + | chr3_4:53950049-53950068 | Msa0507060:intron | 30.0% | |
| ACCCTTAATTTCAACATGAA+CGG | - | chr3_4:53950175-53950194 | None:intergenic | 30.0% | |
| ! | ACGATATAACAATGTGCTTT+TGG | + | chr3_4:53950427-53950446 | Msa0507060:CDS | 30.0% |
| ! | TATAACAATGTGCTTTTGGA+TGG | + | chr3_4:53950431-53950450 | Msa0507060:CDS | 30.0% |
| AATCGTATCAAACAAAAGTC+GGG | - | chr3_4:53950587-53950606 | None:intergenic | 30.0% | |
| GAATCGTATCAAACAAAAGT+CGG | - | chr3_4:53950588-53950607 | None:intergenic | 30.0% | |
| TTTATATTATTCAAGACCCG+AGG | + | chr3_4:53950692-53950711 | Msa0507060:intron | 30.0% | |
| TTATATTATTCAAGACCCGA+GGG | + | chr3_4:53950693-53950712 | Msa0507060:intron | 30.0% | |
| CTAAACTACTAGATCAAAAC+AGG | + | chr3_4:53950758-53950777 | Msa0507060:intron | 30.0% | |
| ACAGAACTTAGAACAATTAG+AGG | - | chr3_4:53950807-53950826 | None:intergenic | 30.0% | |
| !!! | TAAGTTTTTGAGATCAGTAG+TGG | + | chr3_4:53950925-53950944 | Msa0507060:intron | 30.0% |
| AACTGTAGAAGTAAAATGAC+TGG | + | chr3_4:53951073-53951092 | Msa0507060:intron | 30.0% | |
| GTAGAAACTAGACTATTGTT+TGG | + | chr3_4:53951095-53951114 | Msa0507060:intron | 30.0% | |
| AGAAAATTTCCCATTTAGGT+TGG | + | chr3_4:53951125-53951144 | Msa0507060:intron | 30.0% | |
| AATTGTCATCTGCTTAGAAT+GGG | + | chr3_4:53951210-53951229 | Msa0507060:intron | 30.0% | |
| ! | AAGCTTTTTGTCATTGTCAT+TGG | + | chr3_4:53951529-53951548 | Msa0507060:three_prime_UTR | 30.0% |
| !!! | TGAAGAAGGTTTTAGGGTTT+CGG | - | chr3_4:53947361-53947380 | None:intergenic | 35.0% |
| !!! | TTTTTTCTATCATCTCCACC+AGG | + | chr3_4:53947444-53947463 | Msa0507060:five_prime_UTR | 35.0% |
| AACCCATCGAAATCTCAATT+TGG | - | chr3_4:53947504-53947523 | None:intergenic | 35.0% | |
| !!! | GGGTTTTTTTTTGCTGTGAT+TGG | + | chr3_4:53947519-53947538 | Msa0507060:intron | 35.0% |
| TACGAGATCGTGAATAGATT+AGG | + | chr3_4:53947584-53947603 | Msa0507060:intron | 35.0% | |
| ACGAGATCGTGAATAGATTA+GGG | + | chr3_4:53947585-53947604 | Msa0507060:intron | 35.0% | |
| TCGTGAATAGATTAGGGTAA+CGG | + | chr3_4:53947591-53947610 | Msa0507060:intron | 35.0% | |
| !! | GAATTATGGATCTGATTTGG+GGG | + | chr3_4:53947660-53947679 | Msa0507060:intron | 35.0% |
| !!! | ATGGATTTTGAGTTTGGATC+TGG | + | chr3_4:53947875-53947894 | Msa0507060:intron | 35.0% |
| ! | AATATAACTTGTCACGGTAC+CGG | - | chr3_4:53948084-53948103 | None:intergenic | 35.0% |
| CATTGCACTTGCAATAAAAC+AGG | - | chr3_4:53948340-53948359 | None:intergenic | 35.0% | |
| !! | CTGTTTTATTGCAAGTGCAA+TGG | + | chr3_4:53948338-53948357 | Msa0507060:exon | 35.0% |
| ATCATCAAGGGAAATATCCA+AGG | - | chr3_4:53948370-53948389 | None:intergenic | 35.0% | |
| GATAGAAACTCAAAAGCAAG+AGG | + | chr3_4:53948728-53948747 | Msa0507060:intron | 35.0% | |
| !! | TTTTCTGAAGGAGCTTCATT+AGG | + | chr3_4:53948915-53948934 | Msa0507060:intron | 35.0% |
| ACAACCATATACTTAGCAAG+AGG | - | chr3_4:53949089-53949108 | None:intergenic | 35.0% | |
| TTGCTAAGTATATGGTTGTG+CGG | + | chr3_4:53949090-53949109 | Msa0507060:intron | 35.0% | |
| TCTCAAAACACCATGAAACA+GGG | - | chr3_4:53949135-53949154 | None:intergenic | 35.0% | |
| ATCTCAAAACACCATGAAAC+AGG | - | chr3_4:53949136-53949155 | None:intergenic | 35.0% | |
| !!! | TGTTTCATGGTGTTTTGAGA+TGG | + | chr3_4:53949135-53949154 | Msa0507060:intron | 35.0% |
| ! | TCTGACTTGTAACATTACAC+CGG | + | chr3_4:53949187-53949206 | Msa0507060:intron | 35.0% |
| AGTGACCAATGAAGACATAA+GGG | + | chr3_4:53949574-53949593 | Msa0507060:CDS | 35.0% | |
| CTATACCCTTATGTCTTCAT+TGG | - | chr3_4:53949582-53949601 | None:intergenic | 35.0% | |
| AGAACGAAGCATATGATGAT+AGG | - | chr3_4:53949612-53949631 | None:intergenic | 35.0% | |
| TAATTTCCAATTGTTGGGTG+GGG | + | chr3_4:53950050-53950069 | Msa0507060:intron | 35.0% | |
| !! | GGGATTGTTTTGTATCAGAT+CGG | + | chr3_4:53950070-53950089 | Msa0507060:intron | 35.0% |
| TTTGTATCAGATCGGATCAT+AGG | + | chr3_4:53950078-53950097 | Msa0507060:intron | 35.0% | |
| TTTCTATGGAATCCATTTGG+GGG | - | chr3_4:53950104-53950123 | None:intergenic | 35.0% | |
| CTTTCTATGGAATCCATTTG+GGG | - | chr3_4:53950105-53950124 | None:intergenic | 35.0% | |
| GCTTTCTATGGAATCCATTT+GGG | - | chr3_4:53950106-53950125 | None:intergenic | 35.0% | |
| AGCTTTCTATGGAATCCATT+TGG | - | chr3_4:53950107-53950126 | None:intergenic | 35.0% | |
| ! | AAATGGATTCCATAGAAAGC+TGG | + | chr3_4:53950106-53950125 | Msa0507060:intron | 35.0% |
| AATTAATGGCCAGCTTTCTA+TGG | - | chr3_4:53950118-53950137 | None:intergenic | 35.0% | |
| TGCCGTTCATGTTGAAATTA+AGG | + | chr3_4:53950170-53950189 | Msa0507060:intron | 35.0% | |
| GCCGTTCATGTTGAAATTAA+GGG | + | chr3_4:53950171-53950190 | Msa0507060:intron | 35.0% | |
| TAAATGTTGCACCATGTAAC+AGG | + | chr3_4:53950352-53950371 | Msa0507060:intron | 35.0% | |
| AAATGTTGCACCATGTAACA+GGG | + | chr3_4:53950353-53950372 | Msa0507060:intron | 35.0% | |
| CCAACAATCTCAATCTTCAT+GGG | - | chr3_4:53950461-53950480 | None:intergenic | 35.0% | |
| TCCAACAATCTCAATCTTCA+TGG | - | chr3_4:53950462-53950481 | None:intergenic | 35.0% | |
| AAGTGATGAGCAGATGTATA+GGG | - | chr3_4:53950618-53950637 | None:intergenic | 35.0% | |
| ACTGATCTCAAAAACTTACC+CGG | - | chr3_4:53950923-53950942 | None:intergenic | 35.0% | |
| ! | CATTTTACTTCTACAGTTGC+AGG | - | chr3_4:53951071-53951090 | None:intergenic | 35.0% |
| GAATTGTCATCTGCTTAGAA+TGG | + | chr3_4:53951209-53951228 | Msa0507060:intron | 35.0% | |
| ACAGCGAAGTGAAATATTCA+AGG | - | chr3_4:53951560-53951579 | None:intergenic | 35.0% | |
| ! | TTATCCTTTTTGAACTGCGT+TGG | + | chr3_4:53951591-53951610 | Msa0507060:three_prime_UTR | 35.0% |
| TGACGAAGGCAGGAAAATAA+GGG | - | chr3_4:53947392-53947411 | None:intergenic | 40.0% | |
| ATGACGAAGGCAGGAAAATA+AGG | - | chr3_4:53947393-53947412 | None:intergenic | 40.0% | |
| CGTGAATAGATTAGGGTAAC+GGG | + | chr3_4:53947592-53947611 | Msa0507060:intron | 40.0% | |
| GTGAATAGATTAGGGTAACG+GGG | + | chr3_4:53947593-53947612 | Msa0507060:intron | 40.0% | |
| ! | TTTGTTGTGGGGTGTTCAAT+TGG | + | chr3_4:53947930-53947949 | Msa0507060:intron | 40.0% |
| ! | TTGTTGTGGGGTGTTCAATT+GGG | + | chr3_4:53947931-53947950 | Msa0507060:intron | 40.0% |
| ! | GGGGATGGCTAATTAGATTT+TGG | + | chr3_4:53947951-53947970 | Msa0507060:intron | 40.0% |
| AAGTGAATCTCCGGGAATAA+CGG | + | chr3_4:53948047-53948066 | Msa0507060:intron | 40.0% | |
| TATTGCGTAACCGTTATTCC+CGG | - | chr3_4:53948060-53948079 | None:intergenic | 40.0% | |
| AATAACGGTTACGCAATAGC+CGG | + | chr3_4:53948062-53948081 | Msa0507060:intron | 40.0% | |
| ! | GAAATAACTTGTCACGGTAC+AGG | - | chr3_4:53948117-53948136 | None:intergenic | 40.0% |
| ATTAAGAGCAGGAGTAACAG+AGG | + | chr3_4:53948393-53948412 | Msa0507060:CDS | 40.0% | |
| ! | AATGGTAGAAGGACTGGTAA+TGG | + | chr3_4:53948495-53948514 | Msa0507060:CDS | 40.0% |
| GTCATCTTATGCTATTGCCA+AGG | + | chr3_4:53948566-53948585 | Msa0507060:CDS | 40.0% | |
| TACAGATCTCTGATGTATGC+AGG | + | chr3_4:53948869-53948888 | Msa0507060:intron | 40.0% | |
| CTGATGTATGCAGGATTCTT+TGG | + | chr3_4:53948878-53948897 | Msa0507060:intron | 40.0% | |
| GCTCCTTCAGAAAATATGCT+AGG | - | chr3_4:53948909-53948928 | None:intergenic | 40.0% | |
| GGTGACTTTAAATCTTTGGC+TGG | + | chr3_4:53949036-53949055 | Msa0507060:intron | 40.0% | |
| !!! | TGTGCGGACCTTTGTTTTAT+TGG | + | chr3_4:53949061-53949080 | Msa0507060:intron | 40.0% |
| GGATCCTCTTGCTAAGTATA+TGG | + | chr3_4:53949082-53949101 | Msa0507060:intron | 40.0% | |
| TCAGTTACTTCCCTGTTTCA+TGG | + | chr3_4:53949122-53949141 | Msa0507060:intron | 40.0% | |
| ! | TTTTCGCTTACTATCAGCAC+TGG | + | chr3_4:53949161-53949180 | Msa0507060:intron | 40.0% |
| !! | TTACACCGGTTTAAATGCAG+TGG | + | chr3_4:53949201-53949220 | Msa0507060:intron | 40.0% |
| !! | TACACCGGTTTAAATGCAGT+GGG | + | chr3_4:53949202-53949221 | Msa0507060:intron | 40.0% |
| TCAACCCACTGCATTTAAAC+CGG | - | chr3_4:53949209-53949228 | None:intergenic | 40.0% | |
| AGAACACTGATGTTTGACTG+TGG | + | chr3_4:53949259-53949278 | Msa0507060:intron | 40.0% | |
| GAACACTGATGTTTGACTGT+GGG | + | chr3_4:53949260-53949279 | Msa0507060:intron | 40.0% | |
| TAATGAAGTAGATCCGGTCA+TGG | - | chr3_4:53949305-53949324 | None:intergenic | 40.0% | |
| CAAACAGAACAGTTCCAGAA+TGG | - | chr3_4:53949422-53949441 | None:intergenic | 40.0% | |
| TGGAACTGTTCTGTTTGCTT+TGG | + | chr3_4:53949425-53949444 | Msa0507060:intron | 40.0% | |
| !! | ATGGCAGAGTGATTTGTTTG+AGG | + | chr3_4:53949478-53949497 | Msa0507060:CDS | 40.0% |
| TATGTTTCCAATTTGGACCG+AGG | + | chr3_4:53949551-53949570 | Msa0507060:CDS | 40.0% | |
| GAGTGACCAATGAAGACATA+AGG | + | chr3_4:53949573-53949592 | Msa0507060:CDS | 40.0% | |
| ! | AGGAACTTTTCTCTGAGCTT+GGG | + | chr3_4:53949697-53949716 | Msa0507060:intron | 40.0% |
| GACACCCAACTGTAAGTATT+TGG | + | chr3_4:53949757-53949776 | Msa0507060:intron | 40.0% | |
| CAAAACAATCCACACCCAAT+TGG | + | chr3_4:53949886-53949905 | Msa0507060:intron | 40.0% | |
| CCCATGAAGATTGAGATTGT+TGG | + | chr3_4:53950458-53950477 | Msa0507060:CDS | 40.0% | |
| GTGAATGTCTCTGCTATGAA+TGG | + | chr3_4:53950512-53950531 | Msa0507060:CDS | 40.0% | |
| CAAGTGATGAGCAGATGTAT+AGG | - | chr3_4:53950619-53950638 | None:intergenic | 40.0% | |
| CTATACATCTGCTCATCACT+TGG | + | chr3_4:53950617-53950636 | Msa0507060:intron | 40.0% | |
| !! | ATTTTTGTATGGGGTGTTCC+AGG | + | chr3_4:53950851-53950870 | Msa0507060:intron | 40.0% |
| AGATCATGTTTGCATAGCCT+CGG | - | chr3_4:53951448-53951467 | None:intergenic | 40.0% | |
| GATTCCAACGCAGTTCAAAA+AGG | - | chr3_4:53951598-53951617 | None:intergenic | 40.0% | |
| AACTGCGTTGGAATCTTGTT+AGG | + | chr3_4:53951603-53951622 | Msa0507060:three_prime_UTR | 40.0% | |
| ACTGCGTTGGAATCTTGTTA+GGG | + | chr3_4:53951604-53951623 | Msa0507060:three_prime_UTR | 40.0% | |
| TAGGGGCTGAATGATTAAGT+TGG | + | chr3_4:53951622-53951641 | Msa0507060:three_prime_UTR | 40.0% | |
| TTGATGAAGATGACGAAGGC+AGG | - | chr3_4:53947402-53947421 | None:intergenic | 45.0% | |
| GAGCTTGATGAAGATGACGA+AGG | - | chr3_4:53947406-53947425 | None:intergenic | 45.0% | |
| !! | TTATGGATCTGATTTGGGGG+AGG | + | chr3_4:53947663-53947682 | Msa0507060:intron | 45.0% |
| ! | TGTTGTGGGGTGTTCAATTG+GGG | + | chr3_4:53947932-53947951 | Msa0507060:intron | 45.0% |
| CGTCGGATATAACCCCAATT+AGG | - | chr3_4:53948000-53948019 | None:intergenic | 45.0% | |
| AATTGGGGTTATATCCGACG+TGG | + | chr3_4:53948000-53948019 | Msa0507060:intron | 45.0% | |
| ! | GCTACTCTAGATGATAACGC+CGG | + | chr3_4:53948157-53948176 | Msa0507060:intron | 45.0% |
| AAGTGCAATGGCTTCTTCCT+TGG | + | chr3_4:53948350-53948369 | Msa0507060:exon | 45.0% | |
| CCTTCTACCATTAACAGCAC+CGG | - | chr3_4:53948487-53948506 | None:intergenic | 45.0% | |
| GCTGTTAATGGTAGAAGGAC+TGG | + | chr3_4:53948489-53948508 | Msa0507060:CDS | 45.0% | |
| !! | CGCGAGTGTTGACATTAAGT+GGG | - | chr3_4:53948545-53948564 | None:intergenic | 45.0% |
| !! | CACGATTTTTGAGCTTGCCT+TGG | - | chr3_4:53948586-53948605 | None:intergenic | 45.0% |
| CAAGGCAAGCTCAAAAATCG+TGG | + | chr3_4:53948584-53948603 | Msa0507060:intron | 45.0% | |
| AAATCTTTGGCTGGTGTGTG+CGG | + | chr3_4:53949045-53949064 | Msa0507060:intron | 45.0% | |
| GACATGTTCTTCTGCCATTC+TGG | + | chr3_4:53949405-53949424 | Msa0507060:intron | 45.0% | |
| CTTGAATTCCTGCAGCTCTA+AGG | - | chr3_4:53949508-53949527 | None:intergenic | 45.0% | |
| CTTAGAGCTGCAGGAATTCA+AGG | + | chr3_4:53949506-53949525 | Msa0507060:CDS | 45.0% | |
| TGTCTTCATTGGTCACTCCT+CGG | - | chr3_4:53949571-53949590 | None:intergenic | 45.0% | |
| !! | CTGTTTCTAGCAAACCTCTC+TGG | + | chr3_4:53949638-53949657 | Msa0507060:intron | 45.0% |
| ! | CAGGAACTTTTCTCTGAGCT+TGG | + | chr3_4:53949696-53949715 | Msa0507060:intron | 45.0% |
| ! | GGAACTTTTCTCTGAGCTTG+GGG | + | chr3_4:53949698-53949717 | Msa0507060:intron | 45.0% |
| ATCAACAGTCTGCACCCAAT+TGG | + | chr3_4:53949958-53949977 | Msa0507060:intron | 45.0% | |
| AACAATCCCCACCCAACAAT+TGG | - | chr3_4:53950059-53950078 | None:intergenic | 45.0% | |
| TTCAGCTGAACCCTGTTACA+TGG | - | chr3_4:53950366-53950385 | None:intergenic | 45.0% | |
| TCTCTGCTATGAATGGACAG+AGG | + | chr3_4:53950519-53950538 | Msa0507060:CDS | 45.0% | |
| CTATGAATGGACAGAGGAAG+AGG | + | chr3_4:53950525-53950544 | Msa0507060:CDS | 45.0% | |
| CTGCGTTGGAATCTTGTTAG+GGG | + | chr3_4:53951605-53951624 | Msa0507060:three_prime_UTR | 45.0% | |
| !!! | TATTTTTTGTTTATTATTTT+TGG | + | chr3_4:53950950-53950969 | Msa0507060:intron | 5.0% |
| !! | CCGGTGCTGTTAATGGTAGA+AGG | + | chr3_4:53948484-53948503 | Msa0507060:CDS | 50.0% |
| !! | GGTAGAAGGACTGGTAATGG+TGG | + | chr3_4:53948498-53948517 | Msa0507060:CDS | 50.0% |
| GGAAGAACTGCTGTTCGTAG+AGG | + | chr3_4:53948519-53948538 | Msa0507060:CDS | 50.0% | |
| !! | GCGCGAGTGTTGACATTAAG+TGG | - | chr3_4:53948546-53948565 | None:intergenic | 50.0% |
| GTTGAGCATGAGCTTCTCCA+CGG | - | chr3_4:53948774-53948793 | None:intergenic | 50.0% | |
| TCTTGGGTCTGCGAATAGAC+TGG | - | chr3_4:53949451-53949470 | None:intergenic | 50.0% | |
| CTCTGCCATGCAAGAGTCTT+GGG | - | chr3_4:53949467-53949486 | None:intergenic | 50.0% | |
| ACTCTGCCATGCAAGAGTCT+TGG | - | chr3_4:53949468-53949487 | None:intergenic | 50.0% | |
| TGTCAAGAGAACGTCCAGAG+AGG | - | chr3_4:53949655-53949674 | None:intergenic | 50.0% | |
| CAGCATTGCCTGTAACTGCA+CGG | + | chr3_4:53950489-53950508 | Msa0507060:CDS | 50.0% | |
| AGCATTGCCTGTAACTGCAC+GGG | + | chr3_4:53950490-53950509 | Msa0507060:CDS | 50.0% | |
| ACATTCACCCGTGCAGTTAC+AGG | - | chr3_4:53950500-53950519 | None:intergenic | 50.0% | |
| TCATCACTTGGAACTCCCTG+TGG | + | chr3_4:53950629-53950648 | Msa0507060:intron | 50.0% | |
| ! | TTTTACAGTTGGGGACGTCG+TGG | + | chr3_4:53951282-53951301 | Msa0507060:intron | 50.0% |
| TTGCATAGCCTCGGCATGAT+AGG | - | chr3_4:53951439-53951458 | None:intergenic | 50.0% | |
| ! | GTGGGGTGTTCAATTGGGGA+TGG | + | chr3_4:53947936-53947955 | Msa0507060:intron | 55.0% |
| AGAGCAGGAGTAACAGAGGC+AGG | + | chr3_4:53948397-53948416 | Msa0507060:CDS | 55.0% | |
| GAGCAGGAGTAACAGAGGCA+GGG | + | chr3_4:53948398-53948417 | Msa0507060:CDS | 55.0% | |
| AGCAGGAGTAACAGAGGCAG+GGG | + | chr3_4:53948399-53948418 | Msa0507060:CDS | 55.0% | |
| CACCTAGAGTCCCACTTCCA+CGG | - | chr3_4:53948452-53948471 | None:intergenic | 55.0% | |
| !! | AGGAGGACCGGTGCTGTTAA+TGG | + | chr3_4:53948477-53948496 | Msa0507060:CDS | 55.0% |
| GCAGACCCAAGACTCTTGCA+TGG | + | chr3_4:53949459-53949478 | Msa0507060:CDS | 55.0% | |
| ! | GAGGATAGCCTTAGAGCTGC+AGG | + | chr3_4:53949497-53949516 | Msa0507060:CDS | 55.0% |
| GGTCACTCCTCGGTCCAAAT+TGG | - | chr3_4:53949561-53949580 | None:intergenic | 55.0% | |
| TCGGATCATAGGCCCCCAAA+TGG | + | chr3_4:53950089-53950108 | Msa0507060:intron | 55.0% | |
| AGGTCGAGGTCGTGGAAGAA+AGG | + | chr3_4:53951368-53951387 | Msa0507060:CDS | 55.0% | |
| CGAGGTCGTGGAAGAAAGGA+TGG | + | chr3_4:53951372-53951391 | Msa0507060:CDS | 55.0% | |
| GTCAGCTGAGCAGCTTGACA+AGG | + | chr3_4:53951404-53951423 | Msa0507060:CDS | 55.0% | |
| ACTCGAGACCTATCATGCCG+AGG | + | chr3_4:53951428-53951447 | Msa0507060:CDS | 55.0% | |
| AGTAACAGAGGCAGGGGCAG+AGG | + | chr3_4:53948405-53948424 | Msa0507060:CDS | 60.0% | |
| GGACGTGGCAAAGCCCTTTC+TGG | + | chr3_4:53948426-53948445 | Msa0507060:CDS | 60.0% | |
| CCCACTTCCACGGCCAGAAA+GGG | - | chr3_4:53948442-53948461 | None:intergenic | 60.0% | |
| ! | CCCTTTCTGGCCGTGGAAGT+GGG | + | chr3_4:53948439-53948458 | Msa0507060:CDS | 60.0% |
| TCCCACTTCCACGGCCAGAA+AGG | - | chr3_4:53948443-53948462 | None:intergenic | 60.0% | |
| CGTGGAAGTGGGACTCTAGG+TGG | + | chr3_4:53948450-53948469 | Msa0507060:CDS | 60.0% | |
| GGAAGTGGGACTCTAGGTGG+TGG | + | chr3_4:53948453-53948472 | Msa0507060:CDS | 60.0% | |
| !! | GTGGGACTCTAGGTGGTGGA+AGG | + | chr3_4:53948457-53948476 | Msa0507060:CDS | 60.0% |
| !! | GGACTCTAGGTGGTGGAAGG+AGG | + | chr3_4:53948460-53948479 | Msa0507060:CDS | 60.0% |
| !! | CTAGGTGGTGGAAGGAGGAC+CGG | + | chr3_4:53948465-53948484 | Msa0507060:CDS | 60.0% |
| ! | ATGGGGTGTTCCAGGCCTAG+AGG | + | chr3_4:53950859-53950878 | Msa0507060:intron | 60.0% |
| GGTCCTGCCATGCTGAATCG+TGG | + | chr3_4:53950895-53950914 | Msa0507060:CDS | 60.0% | |
| GCACCACGATTCAGCATGGC+AGG | - | chr3_4:53950901-53950920 | None:intergenic | 60.0% | |
| GCCATGCTGAATCGTGGTGC+CGG | + | chr3_4:53950901-53950920 | Msa0507060:CDS | 60.0% | |
| CCATGCTGAATCGTGGTGCC+GGG | + | chr3_4:53950902-53950921 | Msa0507060:CDS | 60.0% | |
| TACAGTTGGGGACGTCGTGG+TGG | + | chr3_4:53951285-53951304 | Msa0507060:intron | 60.0% | |
| GGGACGTCGTGGTGGTTCAA+GGG | + | chr3_4:53951293-53951312 | Msa0507060:CDS | 60.0% | |
| GGACGTCGTGGTGGTTCAAG+GGG | + | chr3_4:53951294-53951313 | Msa0507060:CDS | 60.0% | |
| GTCGTGGTGGTTCAAGGGGT+GGG | + | chr3_4:53951298-53951317 | Msa0507060:CDS | 60.0% | |
| TCGTGGTGGTTCAAGGGGTG+GGG | + | chr3_4:53951299-53951318 | Msa0507060:CDS | 60.0% | |
| GACGGCAGCTGTACGCGGTT+TGG | + | chr3_4:53947241-53947260 | Msa0507060:five_prime_UTR | 65.0% | |
| ! | GGCAAAGCCCTTTCTGGCCG+TGG | + | chr3_4:53948432-53948451 | Msa0507060:CDS | 65.0% |
| ! | GCCCTTTCTGGCCGTGGAAG+TGG | + | chr3_4:53948438-53948457 | Msa0507060:CDS | 65.0% |
| GGCCGTGGAAGTGGGACTCT+AGG | + | chr3_4:53948447-53948466 | Msa0507060:CDS | 65.0% | |
| GGGTGTTCCAGGCCTAGAGG+TGG | + | chr3_4:53950862-53950881 | Msa0507060:intron | 65.0% | |
| TCCAGGCCTAGAGGTGGACG+AGG | + | chr3_4:53950868-53950887 | Msa0507060:intron | 65.0% | |
| ACCTCGTCCACCTCTAGGCC+TGG | - | chr3_4:53950872-53950891 | None:intergenic | 65.0% | |
| AGGCCTAGAGGTGGACGAGG+TGG | + | chr3_4:53950871-53950890 | Msa0507060:intron | 65.0% | |
| CCTCCACCTCGTCCACCTCT+AGG | - | chr3_4:53950877-53950896 | None:intergenic | 65.0% | |
| CCTAGAGGTGGACGAGGTGG+AGG | + | chr3_4:53950874-53950893 | Msa0507060:CDS | 65.0% | |
| CCCGGCACCACGATTCAGCA+TGG | - | chr3_4:53950905-53950924 | None:intergenic | 65.0% | |
| GGGGACGTCGTGGTGGTTCA+AGG | + | chr3_4:53951292-53951311 | Msa0507060:CDS | 65.0% | |
| CGTCGTGGTGGTTCAAGGGG+TGG | + | chr3_4:53951297-53951316 | Msa0507060:CDS | 65.0% | |
| CGTGGTGGTTCAAGGGGTGG+GGG | + | chr3_4:53951300-53951319 | Msa0507060:CDS | 65.0% | |
| GTGGTTCAAGGGGTGGGGGT+GGG | + | chr3_4:53951304-53951323 | Msa0507060:CDS | 65.0% | |
| AGAGGCAGGGGCAGAGGACG+TGG | + | chr3_4:53948411-53948430 | Msa0507060:CDS | 70.0% | |
| GGTGGTTCAAGGGGTGGGGG+TGG | + | chr3_4:53951303-53951322 | Msa0507060:CDS | 70.0% | |
| GACCTCCACCCCTGCCAGGA+CGG | - | chr3_4:53951353-53951372 | None:intergenic | 70.0% | |
| AGGGGTGGAGGTCGAGGTCG+TGG | + | chr3_4:53951360-53951379 | Msa0507060:CDS | 70.0% | |
| ! | GGTGGGAGCGTGCGTGGACG+TGG | + | chr3_4:53951321-53951340 | Msa0507060:CDS | 75.0% |
| AGCGTGCGTGGACGTGGCCG+AGG | + | chr3_4:53951327-53951346 | Msa0507060:CDS | 75.0% | |
| TGGCCGAGGCCGTCCTGGCA+GGG | + | chr3_4:53951341-53951360 | Msa0507060:CDS | 75.0% | |
| CACCCCTGCCAGGACGGCCT+CGG | - | chr3_4:53951347-53951366 | None:intergenic | 75.0% | |
| CCTCGACCTCCACCCCTGCC+AGG | - | chr3_4:53951357-53951376 | None:intergenic | 75.0% | |
| CCTGGCAGGGGTGGAGGTCG+AGG | + | chr3_4:53951354-53951373 | Msa0507060:CDS | 75.0% | |
| !! | GGTGGGGGTGGGAGCGTGCG+TGG | + | chr3_4:53951315-53951334 | Msa0507060:CDS | 80.0% |
| ! | GGACGTGGCCGAGGCCGTCC+TGG | + | chr3_4:53951336-53951355 | Msa0507060:CDS | 80.0% |
| ! | GTGGCCGAGGCCGTCCTGGC+AGG | + | chr3_4:53951340-53951359 | Msa0507060:CDS | 80.0% |
| ! | GGCCGAGGCCGTCCTGGCAG+GGG | + | chr3_4:53951342-53951361 | Msa0507060:CDS | 80.0% |
| ! | CGAGGCCGTCCTGGCAGGGG+TGG | + | chr3_4:53951345-53951364 | Msa0507060:CDS | 80.0% |
| ! | GGCCGTCCTGGCAGGGGTGG+AGG | + | chr3_4:53951348-53951367 | Msa0507060:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 53947239 | 53951692 | 53947239 | ID=Msa0507060;Name=Msa0507060 |
| chr3_4 | mRNA | 53947239 | 53951692 | 53947239 | ID=Msa0507060-mRNA-1;Parent=Msa0507060;Name=Msa0507060-mRNA-1;_AED=0.20;_eAED=0.20;_QI=281|1|1|1|0.83|0.71|7|228|285 |
| chr3_4 | exon | 53947239 | 53947465 | 53947239 | ID=Msa0507060-mRNA-1:exon:11960;Parent=Msa0507060-mRNA-1 |
| chr3_4 | exon | 53948303 | 53948587 | 53948303 | ID=Msa0507060-mRNA-1:exon:11961;Parent=Msa0507060-mRNA-1 |
| chr3_4 | exon | 53949452 | 53949595 | 53949452 | ID=Msa0507060-mRNA-1:exon:11962;Parent=Msa0507060-mRNA-1 |
| chr3_4 | exon | 53949699 | 53949767 | 53949699 | ID=Msa0507060-mRNA-1:exon:11963;Parent=Msa0507060-mRNA-1 |
| chr3_4 | exon | 53950374 | 53950561 | 53950374 | ID=Msa0507060-mRNA-1:exon:11964;Parent=Msa0507060-mRNA-1 |
| chr3_4 | exon | 53950873 | 53950923 | 53950873 | ID=Msa0507060-mRNA-1:exon:11965;Parent=Msa0507060-mRNA-1 |
| chr3_4 | exon | 53951290 | 53951692 | 53951290 | ID=Msa0507060-mRNA-1:exon:11966;Parent=Msa0507060-mRNA-1 |
| chr3_4 | five_prime_UTR | 53947239 | 53947465 | 53947239 | ID=Msa0507060-mRNA-1:five_prime_utr;Parent=Msa0507060-mRNA-1 |
| chr3_4 | five_prime_UTR | 53948303 | 53948356 | 53948303 | ID=Msa0507060-mRNA-1:five_prime_utr;Parent=Msa0507060-mRNA-1 |
| chr3_4 | CDS | 53948357 | 53948587 | 53948357 | ID=Msa0507060-mRNA-1:cds;Parent=Msa0507060-mRNA-1 |
| chr3_4 | CDS | 53949452 | 53949595 | 53949452 | ID=Msa0507060-mRNA-1:cds;Parent=Msa0507060-mRNA-1 |
| chr3_4 | CDS | 53949699 | 53949767 | 53949699 | ID=Msa0507060-mRNA-1:cds;Parent=Msa0507060-mRNA-1 |
| chr3_4 | CDS | 53950374 | 53950561 | 53950374 | ID=Msa0507060-mRNA-1:cds;Parent=Msa0507060-mRNA-1 |
| chr3_4 | CDS | 53950873 | 53950923 | 53950873 | ID=Msa0507060-mRNA-1:cds;Parent=Msa0507060-mRNA-1 |
| chr3_4 | CDS | 53951290 | 53951464 | 53951290 | ID=Msa0507060-mRNA-1:cds;Parent=Msa0507060-mRNA-1 |
| chr3_4 | three_prime_UTR | 53951465 | 53951692 | 53951465 | ID=Msa0507060-mRNA-1:three_prime_utr;Parent=Msa0507060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
