AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0368330

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0368330 MtrunA17_Chr3g0111451 98.734 395 5 0 1 395 1 395 0.0 786
Msa0368330 MtrunA17_Chr5g0435041 74.176 364 93 1 33 395 12 375 7.18e-180 504
Msa0368330 MtrunA17_Chr5g0429231 45.151 299 161 2 48 344 41 338 1.83e-71 228
Msa0368330 MtrunA17_Chr6g0449461 35.294 323 192 8 48 360 9 324 7.53e-45 157
Msa0368330 MtrunA17_Chr3g0134761 33.133 332 203 8 5 325 10 333 5.21e-35 132
Msa0368330 MtrunA17_Chr1g0152561 31.692 325 212 6 3 325 23 339 3.27e-32 124
Msa0368330 MtrunA17_Chr7g0261371 32.759 290 187 5 31 318 504 787 2.28e-31 126
Msa0368330 MtrunA17_Chr3g0106931 32.857 280 180 5 41 318 553 826 3.15e-31 125
Msa0368330 MtrunA17_Chr3g0137061 30.286 350 208 9 56 375 126 469 1.43e-29 119
Msa0368330 MtrunA17_Chr4g0031431 33.333 273 175 5 45 315 357 624 3.73e-29 119
Msa0368330 MtrunA17_Chr7g0237931 32.061 262 169 5 58 317 351 605 2.73e-27 114
Msa0368330 MtrunA17_Chr8g0377151 33.462 260 158 6 81 331 474 727 1.18e-26 112
Msa0368330 MtrunA17_Chr2g0284461 32.500 280 178 7 45 318 400 674 6.95e-26 109
Msa0368330 MtrunA17_Chr1g0149941 32.364 275 169 7 56 318 189 458 7.22e-26 109
Msa0368330 MtrunA17_Chr2g0290151 32.000 275 146 5 85 320 179 451 3.25e-23 100
Msa0368330 MtrunA17_Chr1g0183781 30.035 283 150 6 78 318 437 713 7.17e-23 100
Msa0368330 MtrunA17_Chr3g0122721 34.211 228 137 6 97 319 489 708 4.47e-20 92.4
Msa0368330 MtrunA17_Chr5g0437411 30.072 276 183 8 48 317 412 683 1.76e-19 90.5
Msa0368330 MtrunA17_Chr5g0437411 28.409 176 122 3 124 298 406 578 3.30e-11 65.1
Msa0368330 MtrunA17_Chr4g0044411 27.046 281 160 4 80 319 372 648 1.44e-18 87.8
Msa0368330 MtrunA17_Chr7g0248251 29.455 275 175 6 54 320 380 643 5.70e-18 85.9
Msa0368330 MtrunA17_Chr1g0199321 25.979 281 161 5 80 318 344 619 3.86e-16 80.1
Msa0368330 MtrunA17_Chr4g0059201 27.875 287 181 10 48 319 429 704 5.63e-14 73.6
Msa0368330 MtrunA17_Chr8g0373031 26.816 179 126 2 141 319 536 709 1.84e-13 72.0
Msa0368330 MtrunA17_Chr7g0234671 27.778 270 179 9 58 318 188 450 4.23e-13 70.5
Msa0368330 MtrunA17_Chr5g0404311 25.616 203 143 3 128 326 520 718 1.74e-12 69.3
Msa0368330 MtrunA17_Chr7g0275081 25.735 272 187 5 59 321 189 454 1.90e-12 68.6
Msa0368330 MtrunA17_Chr2g0280671 25.461 271 181 8 56 318 122 379 3.47e-12 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0368330 AT3G03440.1 70.920 337 96 2 41 375 66 402 8.42e-148 425
Msa0368330 AT4G12710.1 47.164 335 169 5 51 378 57 390 9.43e-80 251
Msa0368330 AT5G14510.1 36.137 321 190 8 48 360 9 322 9.91e-42 150
Msa0368330 AT2G23140.3 32.857 280 180 5 41 318 354 627 2.82e-35 137
Msa0368330 AT2G23140.5 32.857 280 180 5 41 318 354 627 2.82e-35 137
Msa0368330 AT2G23140.2 32.857 280 180 5 41 318 543 816 5.19e-35 137
Msa0368330 AT2G23140.4 32.857 280 180 5 41 318 543 816 5.19e-35 137
Msa0368330 AT2G23140.1 32.857 280 180 5 41 318 546 819 5.67e-35 137
Msa0368330 AT3G01400.1 34.815 270 166 6 58 325 82 343 2.03e-33 128
Msa0368330 AT5G67340.1 33.808 281 177 6 41 318 423 697 5.56e-31 125
Msa0368330 AT5G67340.2 33.808 281 177 6 41 318 423 697 5.56e-31 125
Msa0368330 AT5G58680.1 34.586 266 164 7 58 319 80 339 2.67e-30 119
Msa0368330 AT3G54790.2 33.929 280 176 6 48 324 445 718 2.81e-30 123
Msa0368330 AT3G54790.3 33.929 280 176 6 48 324 481 754 3.99e-30 122
Msa0368330 AT3G54790.1 33.929 280 176 6 48 324 481 754 3.99e-30 122
Msa0368330 AT2G25130.1 34.657 277 156 8 54 318 132 395 1.48e-27 114
Msa0368330 AT1G71020.2 33.451 284 182 6 40 320 194 473 1.82e-26 110
Msa0368330 AT1G71020.1 33.451 284 182 6 40 320 342 621 3.02e-26 111
Msa0368330 AT1G29340.1 31.288 326 202 11 12 327 384 697 1.72e-25 109
Msa0368330 AT4G31890.3 34.182 275 163 8 56 318 160 428 2.82e-25 107
Msa0368330 AT4G31890.2 34.182 275 163 8 56 318 160 428 2.82e-25 107
Msa0368330 AT4G31890.1 34.182 275 163 8 56 318 160 428 2.82e-25 107
Msa0368330 AT1G67530.2 30.986 284 177 7 54 326 439 714 2.25e-24 105
Msa0368330 AT1G67530.1 30.986 284 177 7 54 326 439 714 2.25e-24 105
Msa0368330 AT1G67530.4 30.986 284 177 7 54 326 439 714 2.25e-24 105
Msa0368330 AT3G46510.1 31.852 270 177 5 48 315 361 625 2.56e-24 105
Msa0368330 AT4G16490.1 30.175 285 149 6 85 326 189 466 1.95e-23 102
Msa0368330 AT1G24330.1 32.031 256 155 7 84 329 475 721 1.18e-22 100
Msa0368330 AT1G24330.2 32.031 256 155 7 84 329 475 721 1.18e-22 100
Msa0368330 AT3G54850.1 31.541 279 182 6 45 320 351 623 3.56e-21 95.9
Msa0368330 AT1G23030.1 27.046 281 161 5 81 320 333 610 7.72e-20 92.0
Msa0368330 AT1G27910.1 29.900 301 192 10 31 319 411 704 9.49e-19 89.0
Msa0368330 AT2G28830.1 27.306 271 188 7 48 314 292 557 1.30e-18 88.2
Msa0368330 AT5G42340.1 28.114 281 161 6 79 320 379 657 9.81e-17 82.4
Msa0368330 AT3G07360.5 27.407 270 183 6 59 320 54 318 6.04e-15 75.5
Msa0368330 AT3G07360.3 27.407 270 183 6 59 320 54 318 6.04e-15 75.5
Msa0368330 AT3G07360.9 27.407 270 183 6 59 320 54 318 6.04e-15 75.5
Msa0368330 AT3G07360.6 27.407 270 183 6 59 320 54 318 6.04e-15 75.5
Msa0368330 AT3G07360.2 27.407 270 183 6 59 320 54 318 6.04e-15 75.5
Msa0368330 AT3G07360.8 27.407 270 183 6 59 320 54 318 6.04e-15 75.5
Msa0368330 AT3G07360.10 27.407 270 183 6 59 320 54 318 6.04e-15 75.5
Msa0368330 AT3G07360.7 27.407 270 183 6 59 320 54 318 6.04e-15 75.5
Msa0368330 AT3G07360.4 27.407 270 183 6 59 320 54 318 6.04e-15 75.5
Msa0368330 AT3G07360.1 27.407 270 183 6 59 320 189 453 8.44e-15 76.3
Msa0368330 AT5G62560.1 27.239 268 171 9 63 318 258 513 1.22e-14 75.9
Msa0368330 AT5G65200.1 26.740 273 174 8 63 319 248 510 1.06e-12 70.1
Msa0368330 AT1G60190.1 29.043 303 198 12 30 319 366 664 1.34e-12 69.7
Msa0368330 AT4G21350.1 25.833 240 167 5 56 292 111 342 7.81e-11 63.5

Find 125 sgRNAs with CRISPR-Local

Find 339 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAATAATGCTAAGATTATT+AGG 0.163725 3_1:-64923094 None:intergenic
TTGTTGATAACTTAACTTAT+AGG 0.206381 3_1:-64919719 None:intergenic
GCACCACAACCACTAATAAT+TGG 0.238920 3_1:-64922983 None:intergenic
CCCTCCTTCCCATGAATAAT+TGG 0.239502 3_1:-64919864 None:intergenic
TCAGAAGCACAGCCAGCTAT+AGG 0.347463 3_1:-64923667 None:intergenic
TTCAAGCCGCACGTGATATC+AGG 0.350450 3_1:+64919990 Msa0368330:CDS
GACAAATACATAAAGTCATA+TGG 0.361269 3_1:-64919697 None:intergenic
CTTAGAGAAGGTGTCATTCC+AGG 0.365119 3_1:+64923376 Msa0368330:CDS
ATCAACAAACCAATTATTAG+TGG 0.366264 3_1:+64922974 Msa0368330:CDS
CAACAGCATGTTCCCTACTT+TGG 0.373828 3_1:-64923300 None:intergenic
CCTCCTCCTCCAATTATTCA+TGG 0.379335 3_1:+64919855 Msa0368330:CDS
GAGCACGACGGACGGCTAAC+GGG 0.401496 3_1:-64919931 None:intergenic
CAGAAGCACAGCCAGCTATA+GGG 0.409997 3_1:-64923666 None:intergenic
ATTCTCTTAGTAGTTGCAAA+AGG 0.416206 3_1:-64923453 None:intergenic
TGGATTTCAGATCTTGGATA+AGG 0.427057 3_1:-64923478 None:intergenic
TCGGGTTGGATTTCAGATCT+TGG 0.431604 3_1:-64923484 None:intergenic
GAGGAGGAGGAACAGGAGGA+AGG 0.436210 3_1:-64919839 None:intergenic
AAAGTGATCGATGTAAATAC+AGG 0.437224 3_1:+64923344 Msa0368330:CDS
GAACAGGAGGAAGGTGAATG+AGG 0.441315 3_1:-64919830 None:intergenic
TTTATCTCACAAACCCCAAA+TGG 0.442137 3_1:-64923754 None:intergenic
TTCTATGCTCCGAGTCGACT+CGG 0.444577 3_1:+64920075 Msa0368330:CDS
GAATAATGCTAAGATTATTA+GGG 0.451130 3_1:-64923093 None:intergenic
AAACCAATTATTAGTGGTTG+TGG 0.453019 3_1:+64922980 Msa0368330:CDS
TGCTTTGATAGAACCCTTGG+TGG 0.454606 3_1:+64923195 Msa0368330:CDS
CCAGCTATAGGGAGATCACT+TGG 0.456109 3_1:-64923655 None:intergenic
ATATCAACTATGTGAGGGAT+TGG 0.465329 3_1:-64923127 None:intergenic
ACAAATACATAAAGTCATAT+GGG 0.466442 3_1:-64919696 None:intergenic
GCTCTTCAGCTTCTTAAATC+CGG 0.467072 3_1:+64919950 Msa0368330:CDS
CTGCATCAGCTTTCGCCTGT+GGG 0.467126 3_1:-64923042 None:intergenic
GTCAGATAATCTAAATCTGC+AGG 0.467151 3_1:+64922910 Msa0368330:CDS
AAAATCAATATTGTGGAGGC+TGG 0.467906 3_1:+64922857 Msa0368330:CDS
CTCTAAGAATCTCGACAAGA+AGG 0.481238 3_1:-64923012 None:intergenic
AAAACGGCACTCTCCAAAGT+AGG 0.483193 3_1:+64923287 Msa0368330:CDS
TGAATAATTGGAGGAGGAGG+AGG 0.484728 3_1:-64919852 None:intergenic
CTACTTGAGCTCACTGTACA+AGG 0.484972 3_1:+64923400 Msa0368330:CDS
CTCGGTTGAGTCTCATGAAC+CGG 0.490645 3_1:+64920093 Msa0368330:CDS
ACTATATTCTCAAGAGTGTC+GGG 0.493669 3_1:-64923502 None:intergenic
ACCTCCACAATGGCCTGGAC+TGG 0.494679 3_1:-64923828 None:intergenic
AAAGAAAATGCTAGCTGAGA+TGG 0.495708 3_1:+64923573 Msa0368330:CDS
TACTATATTCTCAAGAGTGT+CGG 0.498640 3_1:-64923503 None:intergenic
GTCGTGGAGGTTCTTGAAAA+CGG 0.500560 3_1:+64923271 Msa0368330:CDS
TGTATTTACATCGATCACTT+TGG 0.506488 3_1:-64923342 None:intergenic
ACATCATATCTCAAATTGAC+GGG 0.506554 3_1:+64923530 Msa0368330:CDS
AGGGTAGAGGTTATTTAGAG+AGG 0.510276 3_1:-64919761 None:intergenic
CCAAGTGATCTCCCTATAGC+TGG 0.512340 3_1:+64923655 Msa0368330:CDS
AAAATTGCTTACAATAGTAA+AGG 0.514770 3_1:+64923939 Msa0368330:three_prime_UTR
ACTGCATCAGCTTTCGCCTG+TGG 0.515865 3_1:-64923043 None:intergenic
TCTGAGGCATTTACAGCAAA+GGG 0.516038 3_1:+64923618 Msa0368330:CDS
ACGATTTGAAGGTAGGGTAG+AGG 0.516435 3_1:-64919774 None:intergenic
TAGATACCTCCACAATGGCC+TGG 0.524367 3_1:-64923833 None:intergenic
ATGACACCTTCTCTAAGAAT+CGG 0.525032 3_1:-64923370 None:intergenic
GCTTCTTAAATCCGGCGTGC+CGG 0.525457 3_1:+64919958 Msa0368330:CDS
TGCAAGAATACCACCTTCCT+CGG 0.525981 3_1:-64923248 None:intergenic
TTAAGCAAAGCAAGAAGAGC+CGG 0.529207 3_1:-64920112 None:intergenic
TTCTCTTAGTAGTTGCAAAA+GGG 0.529464 3_1:-64923452 None:intergenic
ATTGACGGGGATGATCAATC+TGG 0.531432 3_1:+64923544 Msa0368330:CDS
GTCTGAGGCATTTACAGCAA+AGG 0.533397 3_1:+64923617 Msa0368330:CDS
ACAGTGAGCTCAAGTAGTCC+TGG 0.534417 3_1:-64923394 None:intergenic
AGAGCACGACGGACGGCTAA+CGG 0.537195 3_1:-64919932 None:intergenic
CAGCTATAGGGAGATCACTT+GGG 0.537530 3_1:-64923654 None:intergenic
GATTTAGATTATCTGACTTG+AGG 0.540482 3_1:-64922904 None:intergenic
TCTAAGAATCTCGACAAGAA+GGG 0.542061 3_1:-64923011 None:intergenic
CCATGAATAATTGGAGGAGG+AGG 0.543600 3_1:-64919855 None:intergenic
AATCCGGCGTGCCGGAGTTG+CGG 0.545098 3_1:+64919966 Msa0368330:CDS
CTCCTCCTCCAATTATTCAT+GGG 0.546122 3_1:+64919856 Msa0368330:CDS
AGAGAAAGAGCAGTTGCTGT+TGG 0.548041 3_1:-64919643 None:intergenic
GGCGAAAGCTGATGCAGTGA+TGG 0.548563 3_1:+64923048 Msa0368330:CDS
TCCTTCCCATGAATAATTGG+AGG 0.550242 3_1:-64919861 None:intergenic
GACTTGAGGAAACTAAGTAT+TGG 0.552250 3_1:-64922890 None:intergenic
TCCAATTATTCATGGGAAGG+AGG 0.552701 3_1:+64919863 Msa0368330:CDS
ACCACCTTCCTCGGATGTCA+AGG 0.553959 3_1:-64923239 None:intergenic
TTGTGCTTTGATAGAACCCT+TGG 0.555673 3_1:+64923192 Msa0368330:CDS
CAAAGTAGGGAACATGCTGT+TGG 0.556934 3_1:+64923301 Msa0368330:CDS
GCGGCTTGAAGCCGCAACTC+CGG 0.558749 3_1:-64919977 None:intergenic
TATTCTCAAGAGTGTCGGGT+TGG 0.560573 3_1:-64923498 None:intergenic
TCCTCCAATTATTCATGGGA+AGG 0.564127 3_1:+64919860 Msa0368330:CDS
AATTGGTTTGTTGATTGAAG+AGG 0.565249 3_1:-64922966 None:intergenic
TCTATAATAATTGTGTCGGT+AGG 0.566656 3_1:-64919890 None:intergenic
CCAATTATTCATGGGAAGGA+GGG 0.567446 3_1:+64919864 Msa0368330:CDS
ATTATGAATTATGCCAGTCC+AGG 0.570094 3_1:+64923815 Msa0368330:three_prime_UTR
TTGTGGAGGTATCTAGTGAC+TGG 0.570735 3_1:+64923841 Msa0368330:three_prime_UTR
CAGGAATAAAATCAATATTG+TGG 0.571152 3_1:+64922850 Msa0368330:intron
AGCTTCTATAATAATTGTGT+CGG 0.572699 3_1:-64919894 None:intergenic
AGGTGGTATTCTTGCAGTCG+TGG 0.573719 3_1:+64923255 Msa0368330:CDS
TTGTAAGACATTAAGAAACA+TGG 0.576017 3_1:+64923883 Msa0368330:three_prime_UTR
CTAAGAATCTCGACAAGAAG+GGG 0.576621 3_1:-64923010 None:intergenic
TCTTAGAGACGGAAGCCCAC+AGG 0.580593 3_1:+64923027 Msa0368330:CDS
TGAGGATATCAACTATGTGA+GGG 0.581995 3_1:-64923132 None:intergenic
TTCCCATGAATAATTGGAGG+AGG 0.585638 3_1:-64919858 None:intergenic
CAAATACATAAAGTCATATG+GGG 0.586046 3_1:-64919695 None:intergenic
AGCACGACGGACGGCTAACG+GGG 0.589929 3_1:-64919930 None:intergenic
TTGAGGATATCAACTATGTG+AGG 0.590212 3_1:-64923133 None:intergenic
GAGACTCAACCGAGTCGACT+CGG 0.590880 3_1:-64920084 None:intergenic
TATGCCAGTCCAGGCCATTG+TGG 0.592164 3_1:+64923824 Msa0368330:three_prime_UTR
AATCTCGACAAGAAGGGGAA+TGG 0.600844 3_1:-64923005 None:intergenic
AAGCTGAAGAGCACGACGGA+CGG 0.604497 3_1:-64919939 None:intergenic
CGTCAGTTGTCTGAAGCTGT+CGG 0.607472 3_1:+64920043 Msa0368330:CDS
CGAAAACATCACAGAGGTGT+CGG 0.611962 3_1:+64920020 Msa0368330:CDS
AACATCATATCTCAAATTGA+CGG 0.612026 3_1:+64923529 Msa0368330:CDS
GCCAGTCCAGGCCATTGTGG+AGG 0.613077 3_1:+64923827 Msa0368330:three_prime_UTR
AAGCCGCAACTCCGGCACGC+CGG 0.613231 3_1:-64919969 None:intergenic
CTTGTCGAGATTCTTAGAGA+CGG 0.615547 3_1:+64923016 Msa0368330:CDS
TTTCTCTCACCTCTTCACAA+TGG 0.622249 3_1:+64919802 Msa0368330:exon
AAACGGCACTCTCCAAAGTA+GGG 0.624721 3_1:+64923288 Msa0368330:CDS
ACCGCCTTGACATCCGAGGA+AGG 0.627307 3_1:+64923235 Msa0368330:CDS
AGCTATAGGGAGATCACTTG+GGG 0.628255 3_1:-64923653 None:intergenic
AAGTTTCCTGATATCACGTG+CGG 0.638608 3_1:-64919996 None:intergenic
TGGTATTCTTGCAGTCGTGG+AGG 0.644268 3_1:+64923258 Msa0368330:CDS
GAATAAAATCAATATTGTGG+AGG 0.645985 3_1:+64922853 Msa0368330:CDS
AGGGAACCGATTCTTAGAGA+AGG 0.647481 3_1:+64923364 Msa0368330:CDS
CATTCATCATAATCCACCAA+GGG 0.647888 3_1:-64923208 None:intergenic
CAGAACCGCCTTGACATCCG+AGG 0.651171 3_1:+64923231 Msa0368330:CDS
AAGTGATCGATGTAAATACA+GGG 0.660329 3_1:+64923345 Msa0368330:CDS
CATCATATCTCAAATTGACG+GGG 0.663210 3_1:+64923531 Msa0368330:CDS
TGAGATGGTTCAAGTCAGCA+TGG 0.664334 3_1:+64923588 Msa0368330:CDS
GCATTCATCATAATCCACCA+AGG 0.668148 3_1:-64923209 None:intergenic
TCAGCATGGAACAAAGTCTG+AGG 0.668450 3_1:+64923602 Msa0368330:CDS
ACCTTCCTCGGATGTCAAGG+CGG 0.668607 3_1:-64923236 None:intergenic
CGGACGGCTAACGGGGTCTG+CGG 0.676544 3_1:-64919923 None:intergenic
GAGGAGTGTCCATTGTGAAG+AGG 0.676784 3_1:-64919811 None:intergenic
GTCACTAGATACCTCCACAA+TGG 0.692250 3_1:-64923838 None:intergenic
AAATACATAAAGTCATATGG+GGG 0.701924 3_1:-64919694 None:intergenic
GCCTTGACATCCGAGGAAGG+TGG 0.736934 3_1:+64923238 Msa0368330:CDS
TAAGAAGCTGAAGAGCACGA+CGG 0.746959 3_1:-64919943 None:intergenic
AACTTACGAAAACATCACAG+AGG 0.790561 3_1:+64920014 Msa0368330:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTTCTATAGAAAAAAA+AGG + chr3_1:64923774-64923793 Msa0368330:three_prime_UTR 10.0%
!! AAATTTCTATAGAAAAAAAA+GGG + chr3_1:64923775-64923794 Msa0368330:three_prime_UTR 10.0%
!! CAAACAAAAAAAAAATCAAT+TGG + chr3_1:64920198-64920217 Msa0368330:intron 15.0%
!!! TTTTTTTGTGTATAGATTAT+TGG + chr3_1:64920228-64920247 Msa0368330:intron 15.0%
!!! ATTTGTATAAGAATTTTTCT+TGG + chr3_1:64920683-64920702 Msa0368330:intron 15.0%
!!! TATTTTCCTTTTATTTTTCA+TGG + chr3_1:64921055-64921074 Msa0368330:intron 15.0%
!!! GATAAACTTTTTTTTTTTAG+AGG - chr3_1:64921221-64921240 None:intergenic 15.0%
!! AAAAAAAAAGTTTATCCAAT+TGG + chr3_1:64921225-64921244 Msa0368330:intron 15.0%
!! AATTGAATATATCTAAAAAG+TGG + chr3_1:64921491-64921510 Msa0368330:intron 15.0%
!!! AACAAACAAGATAATATTTT+TGG - chr3_1:64922730-64922749 None:intergenic 15.0%
!! AATTCAATCATATTCATAAT+TGG + chr3_1:64922817-64922836 Msa0368330:intron 15.0%
!! ACAAATACATAAAGTCATAT+GGG - chr3_1:64919699-64919718 None:intergenic 20.0%
!!! TTGTTGATAACTTAACTTAT+AGG - chr3_1:64919722-64919741 None:intergenic 20.0%
!!! ATTTTCTTAGAAATTTCTTG+TGG - chr3_1:64920176-64920195 None:intergenic 20.0%
!!! TTTTTTGCATAAGAATGATA+AGG + chr3_1:64920504-64920523 Msa0368330:intron 20.0%
!! GGAAAAAAAAGAAAATGAAA+GGG - chr3_1:64920728-64920747 None:intergenic 20.0%
!! TGGAAAAAAAAGAAAATGAA+AGG - chr3_1:64920729-64920748 None:intergenic 20.0%
!! GAAAATATAGAAAATTTGAG+TGG + chr3_1:64920775-64920794 Msa0368330:intron 20.0%
!!! AGATAGTTTGTTAAGAATAA+TGG + chr3_1:64920862-64920881 Msa0368330:intron 20.0%
!!! GATAGTTTGTTAAGAATAAT+GGG + chr3_1:64920863-64920882 Msa0368330:intron 20.0%
!!! CTTTTTTTTTTTAGAGGAAT+TGG - chr3_1:64921215-64921234 None:intergenic 20.0%
!! TTAAAAGGAAAAGAAACAAA+AGG - chr3_1:64921294-64921313 None:intergenic 20.0%
!! AATTGAATGTATCTAAAAAG+TGG - chr3_1:64921430-64921449 None:intergenic 20.0%
!! GTAGGAAAAAAAAAATACAA+AGG - chr3_1:64921564-64921583 None:intergenic 20.0%
!! TGCAGAGATATTTAATAAAT+TGG + chr3_1:64921608-64921627 Msa0368330:intron 20.0%
!! GCAGAGATATTTAATAAATT+GGG + chr3_1:64921609-64921628 Msa0368330:intron 20.0%
!!! GAATTTTGATTTCTTTTGTT+TGG + chr3_1:64922667-64922686 Msa0368330:intron 20.0%
!! GAATAATGCTAAGATTATTA+GGG - chr3_1:64923096-64923115 None:intergenic 20.0%
!! AGAATAATGCTAAGATTATT+AGG - chr3_1:64923097-64923116 None:intergenic 20.0%
!!! GTATCTTTTTTCCTTATTTT+TGG + chr3_1:64923727-64923746 Msa0368330:three_prime_UTR 20.0%
!!! TTATTTTTGGTTTTCCATTT+GGG + chr3_1:64923740-64923759 Msa0368330:three_prime_UTR 20.0%
!! ATAGAAAAAAAAGGGAAAAA+AGG + chr3_1:64923783-64923802 Msa0368330:three_prime_UTR 20.0%
!! TAGAAAAAAAAGGGAAAAAA+GGG + chr3_1:64923784-64923803 Msa0368330:three_prime_UTR 20.0%
!! AAAATTGCTTACAATAGTAA+AGG + chr3_1:64923939-64923958 Msa0368330:three_prime_UTR 20.0%
! AAATACATAAAGTCATATGG+GGG - chr3_1:64919697-64919716 None:intergenic 25.0%
! CAAATACATAAAGTCATATG+GGG - chr3_1:64919698-64919717 None:intergenic 25.0%
! GACAAATACATAAAGTCATA+TGG - chr3_1:64919700-64919719 None:intergenic 25.0%
! AGCTTCTATAATAATTGTGT+CGG - chr3_1:64919897-64919916 None:intergenic 25.0%
!!! TTTGTTAAGAATAATGGGTT+GGG + chr3_1:64920868-64920887 Msa0368330:intron 25.0%
! TCTTATTCTTATGTCAAAGA+TGG - chr3_1:64920921-64920940 None:intergenic 25.0%
! AATATGACATCAGAAAGAAT+TGG + chr3_1:64921167-64921186 Msa0368330:intron 25.0%
! AGAAAGAAGATAAGCTTAAA+AGG - chr3_1:64921309-64921328 None:intergenic 25.0%
!! TTTTTGCTTATATTAGTGAC+CGG - chr3_1:64921515-64921534 None:intergenic 25.0%
!! TTTTTGCTTATATTAGTGAC+CGG + chr3_1:64921515-64921534 Msa0368330:intron 25.0%
! AAAAAAAAATACAAAGGTGG+TGG - chr3_1:64921558-64921577 None:intergenic 25.0%
! GGAAAAAAAAAATACAAAGG+TGG - chr3_1:64921561-64921580 None:intergenic 25.0%
! TATTTAATAAATTGGGACAC+AGG + chr3_1:64921616-64921635 Msa0368330:intron 25.0%
! TTATGCGTGTTCAAAAATAA+AGG + chr3_1:64921711-64921730 Msa0368330:intron 25.0%
! TATGCGTGTTCAAAAATAAA+GGG + chr3_1:64921712-64921731 Msa0368330:intron 25.0%
! AAGCCAAAACAAGAAATTTA+AGG - chr3_1:64921979-64921998 None:intergenic 25.0%
! TTAATTCAATAACCACTTTG+CGG - chr3_1:64922137-64922156 None:intergenic 25.0%
! AAAGTAAAATTTAATTCCCC+TGG - chr3_1:64922319-64922338 None:intergenic 25.0%
!! AGGGGAATTAAATTTTACTT+TGG + chr3_1:64922318-64922337 Msa0368330:intron 25.0%
! TTGTTAAGTAGATAATCGTT+TGG + chr3_1:64922395-64922414 Msa0368330:intron 25.0%
! TGTTAAGTAGATAATCGTTT+GGG + chr3_1:64922396-64922415 Msa0368330:intron 25.0%
!! ATCTGAAATAAAGAGCAAAA+AGG - chr3_1:64922756-64922775 None:intergenic 25.0%
! CAAAAAGTTAATCAATACTG+TGG - chr3_1:64922780-64922799 None:intergenic 25.0%
! CAGGAATAAAATCAATATTG+TGG + chr3_1:64922850-64922869 Msa0368330:intron 25.0%
! GAATAAAATCAATATTGTGG+AGG + chr3_1:64922853-64922872 Msa0368330:CDS 25.0%
! ATCAACAAACCAATTATTAG+TGG + chr3_1:64922974-64922993 Msa0368330:CDS 25.0%
! AACATCATATCTCAAATTGA+CGG + chr3_1:64923529-64923548 Msa0368330:CDS 25.0%
!!! TTTTAAGTAATAGTTGCACT+TGG + chr3_1:64923696-64923715 Msa0368330:exon 25.0%
! CAAATGGAAAACCAAAAATA+AGG - chr3_1:64923741-64923760 None:intergenic 25.0%
!!! CTTATTTTTGGTTTTCCATT+TGG + chr3_1:64923739-64923758 Msa0368330:three_prime_UTR 25.0%
!!! TATTTTTGGTTTTCCATTTG+GGG + chr3_1:64923741-64923760 Msa0368330:three_prime_UTR 25.0%
! TTGTAAGACATTAAGAAACA+TGG + chr3_1:64923883-64923902 Msa0368330:three_prime_UTR 25.0%
! AGTTTTACGATTTGAAGGTA+GGG - chr3_1:64919783-64919802 None:intergenic 30.0%
! AAGTTTTACGATTTGAAGGT+AGG - chr3_1:64919784-64919803 None:intergenic 30.0%
! GAGAAAGTTTTACGATTTGA+AGG - chr3_1:64919788-64919807 None:intergenic 30.0%
! TCTATAATAATTGTGTCGGT+AGG - chr3_1:64919893-64919912 None:intergenic 30.0%
!! AGCTTACTTTTCATCTTTGA+CGG - chr3_1:64920143-64920162 None:intergenic 30.0%
TGTGTATAGATTATTGGTAG+TGG + chr3_1:64920234-64920253 Msa0368330:intron 30.0%
!!! TTGAACGTGCTTTTGATTTA+TGG + chr3_1:64920299-64920318 Msa0368330:intron 30.0%
!!! TGAACGTGCTTTTGATTTAT+GGG + chr3_1:64920300-64920319 Msa0368330:intron 30.0%
TTGCATAATCAATTCCTTTC+TGG + chr3_1:64920608-64920627 Msa0368330:intron 30.0%
TTGCATACAAGTAGCATATA+CGG + chr3_1:64920635-64920654 Msa0368330:intron 30.0%
CTTAACAAACTATCTAGTCT+AGG - chr3_1:64920857-64920876 None:intergenic 30.0%
!! GTTTGTTAAGAATAATGGGT+TGG + chr3_1:64920867-64920886 Msa0368330:intron 30.0%
!! TTGTTAAGAATAATGGGTTG+GGG + chr3_1:64920869-64920888 Msa0368330:intron 30.0%
TAAGCAAAGTCATGAAAAAG+TGG - chr3_1:64920947-64920966 None:intergenic 30.0%
!! CTTTTTCATGACTTTGCTTA+TGG + chr3_1:64920947-64920966 Msa0368330:intron 30.0%
ACAGAAAAACACCAATTTCA+TGG - chr3_1:64921033-64921052 None:intergenic 30.0%
!!! TCCTTTTATTTTTCATGGTG+AGG + chr3_1:64921060-64921079 Msa0368330:intron 30.0%
TCCTCACCATGAAAAATAAA+AGG - chr3_1:64921064-64921083 None:intergenic 30.0%
AAGTTTATCCAATTGGATAG+TGG + chr3_1:64921232-64921251 Msa0368330:intron 30.0%
AAGAAAATCCACTATCCAAT+TGG - chr3_1:64921243-64921262 None:intergenic 30.0%
!!! ATTGGATAGTGGATTTTCTT+TGG + chr3_1:64921243-64921262 Msa0368330:intron 30.0%
ATGAGAACAATTAGAACCTT+AGG - chr3_1:64921346-64921365 None:intergenic 30.0%
TCTACAACTCAGATGATAAA+AGG + chr3_1:64921584-64921603 Msa0368330:intron 30.0%
! TAACCTCTTTTCTTTTTCCA+AGG - chr3_1:64921694-64921713 None:intergenic 30.0%
GAAAATCACTTTCATGCTAT+GGG + chr3_1:64921804-64921823 Msa0368330:intron 30.0%
! CATTTACACCTCACAAATTT+TGG - chr3_1:64921835-64921854 None:intergenic 30.0%
CATAACAAAAATGTAGGGTA+GGG - chr3_1:64921880-64921899 None:intergenic 30.0%
CTTGGCATAACAAAAATGTA+GGG - chr3_1:64921885-64921904 None:intergenic 30.0%
!! TGGCCTTAAATTTCTTGTTT+TGG + chr3_1:64921973-64921992 Msa0368330:intron 30.0%
!! TAGATGCTTTTTGAGAAGAA+AGG + chr3_1:64922027-64922046 Msa0368330:intron 30.0%
! GGAGTATTTATTTCTTTGCT+AGG - chr3_1:64922189-64922208 None:intergenic 30.0%
! ACCTTTTGCCTCTAATAAAA+GGG - chr3_1:64922233-64922252 None:intergenic 30.0%
! AATGAATAATAAGAGTGCAG+AGG - chr3_1:64922348-64922367 None:intergenic 30.0%
AAGATGCAAGAAACTAATCA+TGG - chr3_1:64922558-64922577 None:intergenic 30.0%
!! TGATTAGTTTCTTGCATCTT+AGG + chr3_1:64922558-64922577 Msa0368330:intron 30.0%
!! TGGTATATCATGTTGCTTTA+TGG + chr3_1:64922687-64922706 Msa0368330:intron 30.0%
! GATTTAGATTATCTGACTTG+AGG - chr3_1:64922907-64922926 None:intergenic 30.0%
!! AATTGGTTTGTTGATTGAAG+AGG - chr3_1:64922969-64922988 None:intergenic 30.0%
AAACCAATTATTAGTGGTTG+TGG + chr3_1:64922980-64922999 Msa0368330:CDS 30.0%
TGTATTTACATCGATCACTT+TGG - chr3_1:64923345-64923364 None:intergenic 30.0%
AAAGTGATCGATGTAAATAC+AGG + chr3_1:64923344-64923363 Msa0368330:CDS 30.0%
AAGTGATCGATGTAAATACA+GGG + chr3_1:64923345-64923364 Msa0368330:CDS 30.0%
TTCTCTTAGTAGTTGCAAAA+GGG - chr3_1:64923455-64923474 None:intergenic 30.0%
ATTCTCTTAGTAGTTGCAAA+AGG - chr3_1:64923456-64923475 None:intergenic 30.0%
! TACTATATTCTCAAGAGTGT+CGG - chr3_1:64923506-64923525 None:intergenic 30.0%
ACATCATATCTCAAATTGAC+GGG + chr3_1:64923530-64923549 Msa0368330:CDS 30.0%
!!! AAGAAACATGGTTTTGTAGT+TGG + chr3_1:64923895-64923914 Msa0368330:three_prime_UTR 30.0%
AACTTACGAAAACATCACAG+AGG + chr3_1:64920014-64920033 Msa0368330:CDS 35.0%
ATGCAAAAAACGCTATGCTT+AGG - chr3_1:64920494-64920513 None:intergenic 35.0%
AGAATGATAAGGAGAAGACA+TGG + chr3_1:64920515-64920534 Msa0368330:intron 35.0%
TTGTATGCAAAGATCCAGAA+AGG - chr3_1:64920625-64920644 None:intergenic 35.0%
ACAAGTAGCATATACGGTTT+AGG + chr3_1:64920641-64920660 Msa0368330:intron 35.0%
TCTTGGATTCTGTTCTTTGT+TGG + chr3_1:64920700-64920719 Msa0368330:intron 35.0%
CTTGGATTCTGTTCTTTGTT+GGG + chr3_1:64920701-64920720 Msa0368330:intron 35.0%
TCCATATCTTTGCATCTCAT+TGG + chr3_1:64920745-64920764 Msa0368330:intron 35.0%
ACCAATGAGATGCAAAGATA+TGG - chr3_1:64920749-64920768 None:intergenic 35.0%
TATCTTTGCATCTCATTGGT+TGG + chr3_1:64920749-64920768 Msa0368330:intron 35.0%
! GTCTAGGTTGAAAGAAAGAA+TGG - chr3_1:64920841-64920860 None:intergenic 35.0%
ATGACTTTGCTTATGGTACT+TGG + chr3_1:64920954-64920973 Msa0368330:intron 35.0%
CAGAAGATAAGCCATGAAAT+TGG + chr3_1:64921019-64921038 Msa0368330:intron 35.0%
CATCTTAGTTGACATTCTAG+TGG - chr3_1:64921103-64921122 None:intergenic 35.0%
!! TGGATTTTCTTTGGTTCACT+TGG + chr3_1:64921252-64921271 Msa0368330:intron 35.0%
!! ATTTTCTTTGGTTCACTTGG+TGG + chr3_1:64921255-64921274 Msa0368330:intron 35.0%
GAACAATTAGAACCTTAGGA+AGG - chr3_1:64921342-64921361 None:intergenic 35.0%
TATCATCTGAGTTGTAGAGT+AGG - chr3_1:64921582-64921601 None:intergenic 35.0%
! ATTTTCCATTTCTCAGCACT+TGG + chr3_1:64921651-64921670 Msa0368330:intron 35.0%
!! TAATACCAAGTGCTGAGAAA+TGG - chr3_1:64921659-64921678 None:intergenic 35.0%
TATTATGTGGCTAAGTTCCT+TGG + chr3_1:64921674-64921693 Msa0368330:intron 35.0%
GTTCCTTGGAAAAAGAAAAG+AGG + chr3_1:64921688-64921707 Msa0368330:intron 35.0%
ATAAAGGGAAAGTGAGAGTA+CGG + chr3_1:64921727-64921746 Msa0368330:intron 35.0%
!!! AAGGTATTGATTTTCACCCA+TGG + chr3_1:64921764-64921783 Msa0368330:intron 35.0%
GGAAAATCACTTTCATGCTA+TGG + chr3_1:64921803-64921822 Msa0368330:intron 35.0%
GCATAACAAAAATGTAGGGT+AGG - chr3_1:64921881-64921900 None:intergenic 35.0%
GCTTGGCATAACAAAAATGT+AGG - chr3_1:64921886-64921905 None:intergenic 35.0%
CATATAGGTAGTAGATGAGA+GGG - chr3_1:64921942-64921961 None:intergenic 35.0%
ACCTATATGCAAAACAAGCA+TGG + chr3_1:64921953-64921972 Msa0368330:intron 35.0%
!! TAAAAGGGTGCTTACATGTA+GGG - chr3_1:64922218-64922237 None:intergenic 35.0%
!! ATAAAAGGGTGCTTACATGT+AGG - chr3_1:64922219-64922238 None:intergenic 35.0%
! TGTAAGCACCCTTTTATTAG+AGG + chr3_1:64922222-64922241 Msa0368330:intron 35.0%
! ACCCTTTTATTAGAGGCAAA+AGG + chr3_1:64922229-64922248 Msa0368330:intron 35.0%
! CACCTTTTGCCTCTAATAAA+AGG - chr3_1:64922234-64922253 None:intergenic 35.0%
!! GCAAAAGGTGCTTACATATA+GGG + chr3_1:64922244-64922263 Msa0368330:intron 35.0%
ATCACAAGATTGTTAAGCCA+GGG + chr3_1:64922299-64922318 Msa0368330:intron 35.0%
GGAGAACCAGATTTCAAATA+TGG + chr3_1:64922417-64922436 Msa0368330:intron 35.0%
ACCAGATTTCAAATATGGAC+CGG + chr3_1:64922422-64922441 Msa0368330:intron 35.0%
!!! AATTTTTTGTCTCCACCCTT+CGG - chr3_1:64922512-64922531 None:intergenic 35.0%
AATTTCAATCACACCCTAGA+AGG - chr3_1:64922596-64922615 None:intergenic 35.0%
TAAAATCGGAGTTCATTCTC+TGG - chr3_1:64922631-64922650 None:intergenic 35.0%
!! CATAATTGGTCTTATCTTGC+AGG + chr3_1:64922831-64922850 Msa0368330:intron 35.0%
AAAATCAATATTGTGGAGGC+TGG + chr3_1:64922857-64922876 Msa0368330:CDS 35.0%
GACTTGAGGAAACTAAGTAT+TGG - chr3_1:64922893-64922912 None:intergenic 35.0%
GTCAGATAATCTAAATCTGC+AGG + chr3_1:64922910-64922929 Msa0368330:CDS 35.0%
TCTAAGAATCTCGACAAGAA+GGG - chr3_1:64923014-64923033 None:intergenic 35.0%
ATATCAACTATGTGAGGGAT+TGG - chr3_1:64923130-64923149 None:intergenic 35.0%
TGAGGATATCAACTATGTGA+GGG - chr3_1:64923135-64923154 None:intergenic 35.0%
TTGAGGATATCAACTATGTG+AGG - chr3_1:64923136-64923155 None:intergenic 35.0%
! AGGACTTTTTGCATGTTTTG+AGG - chr3_1:64923153-64923172 None:intergenic 35.0%
!! ACATTTTTCAGCTGTTTTCG+AGG - chr3_1:64923173-64923192 None:intergenic 35.0%
CATTCATCATAATCCACCAA+GGG - chr3_1:64923211-64923230 None:intergenic 35.0%
! ATGACACCTTCTCTAAGAAT+CGG - chr3_1:64923373-64923392 None:intergenic 35.0%
TGGATTTCAGATCTTGGATA+AGG - chr3_1:64923481-64923500 None:intergenic 35.0%
!! ACTATATTCTCAAGAGTGTC+GGG - chr3_1:64923505-64923524 None:intergenic 35.0%
CATCATATCTCAAATTGACG+GGG + chr3_1:64923531-64923550 Msa0368330:CDS 35.0%
AAAGAAAATGCTAGCTGAGA+TGG + chr3_1:64923573-64923592 Msa0368330:CDS 35.0%
TTTATCTCACAAACCCCAAA+TGG - chr3_1:64923757-64923776 None:intergenic 35.0%
ATTATGAATTATGCCAGTCC+AGG + chr3_1:64923815-64923834 Msa0368330:three_prime_UTR 35.0%
AGGGTAGAGGTTATTTAGAG+AGG - chr3_1:64919764-64919783 None:intergenic 40.0%
TTTCTCTCACCTCTTCACAA+TGG + chr3_1:64919802-64919821 Msa0368330:exon 40.0%
CTCCTCCTCCAATTATTCAT+GGG + chr3_1:64919856-64919875 Msa0368330:CDS 40.0%
TTCCCATGAATAATTGGAGG+AGG - chr3_1:64919861-64919880 None:intergenic 40.0%
TCCTCCAATTATTCATGGGA+AGG + chr3_1:64919860-64919879 Msa0368330:CDS 40.0%
TCCTTCCCATGAATAATTGG+AGG - chr3_1:64919864-64919883 None:intergenic 40.0%
TCCAATTATTCATGGGAAGG+AGG + chr3_1:64919863-64919882 Msa0368330:CDS 40.0%
CCAATTATTCATGGGAAGGA+GGG + chr3_1:64919864-64919883 Msa0368330:CDS 40.0%
GCTCTTCAGCTTCTTAAATC+CGG + chr3_1:64919950-64919969 Msa0368330:CDS 40.0%
AAGTTTCCTGATATCACGTG+CGG - chr3_1:64919999-64920018 None:intergenic 40.0%
TTAAGCAAAGCAAGAAGAGC+CGG - chr3_1:64920115-64920134 None:intergenic 40.0%
! TTTGCATCTCATTGGTTGGT+GGG + chr3_1:64920753-64920772 Msa0368330:intron 40.0%
CTAGTGGTCATAAGATGACA+TGG - chr3_1:64921087-64921106 None:intergenic 40.0%
CAATTAGAACCTTAGGAAGG+AGG - chr3_1:64921339-64921358 None:intergenic 40.0%
CACTTTCAAAATACACCCTC+CGG + chr3_1:64921384-64921403 Msa0368330:intron 40.0%
TGCTTATATTAGTGACCGGA+GGG - chr3_1:64921519-64921538 None:intergenic 40.0%
TTGCTTATATTAGTGACCGG+AGG - chr3_1:64921518-64921537 None:intergenic 40.0%
TGCTTATATTAGTGACCGGA+CGG + chr3_1:64921519-64921538 Msa0368330:intron 40.0%
TCTCAGCACTTGGTATTATG+TGG + chr3_1:64921661-64921680 Msa0368330:intron 40.0%
AACAAAAATGTAGGGTAGGG+AGG - chr3_1:64921877-64921896 None:intergenic 40.0%
TTATGCCAAGCAATTGCGAA+GGG + chr3_1:64921895-64921914 Msa0368330:intron 40.0%
AAAATCCCTTCGCAATTGCT+TGG - chr3_1:64921903-64921922 None:intergenic 40.0%
AGATGAGAGGGTAGGTAATT+TGG - chr3_1:64921930-64921949 None:intergenic 40.0%
GCATATAGGTAGTAGATGAG+AGG - chr3_1:64921943-64921962 None:intergenic 40.0%
!!! GCCATGCTTGTTTTGCATAT+AGG - chr3_1:64921957-64921976 None:intergenic 40.0%
AAAGGTGGAAATGAGAGAGA+TGG - chr3_1:64922070-64922089 None:intergenic 40.0%
CTCTCATTTCCACCTTTCTT+CGG + chr3_1:64922073-64922092 Msa0368330:intron 40.0%
ATATTTGTCCAACCGCAAAG+TGG + chr3_1:64922122-64922141 Msa0368330:intron 40.0%
TTCAATAACCACTTTGCGGT+TGG - chr3_1:64922133-64922152 None:intergenic 40.0%
! TTGCTAGGCACAAGTTTTCA+TGG - chr3_1:64922174-64922193 None:intergenic 40.0%
!! GGCAAAAGGTGCTTACATAT+AGG + chr3_1:64922243-64922262 Msa0368330:intron 40.0%
! AAGGTGCTTACATATAGGGA+CGG + chr3_1:64922248-64922267 Msa0368330:intron 40.0%
CTGGCTTAACAATCTTGTGA+TGG - chr3_1:64922300-64922319 None:intergenic 40.0%
CATCACAAGATTGTTAAGCC+AGG + chr3_1:64922298-64922317 Msa0368330:intron 40.0%
TCACAAGATTGTTAAGCCAG+GGG + chr3_1:64922300-64922319 Msa0368330:intron 40.0%
! TCCGGTCCATATTTGAAATC+TGG - chr3_1:64922426-64922445 None:intergenic 40.0%
! GGTATGTAAAGTCTGGTTTC+CGG - chr3_1:64922444-64922463 None:intergenic 40.0%
! TCTTGCATCTTAGGCCTTAT+TGG + chr3_1:64922567-64922586 Msa0368330:intron 40.0%
!! CTTGCATCTTAGGCCTTATT+GGG + chr3_1:64922568-64922587 Msa0368330:intron 40.0%
GCACCACAACCACTAATAAT+TGG - chr3_1:64922986-64923005 None:intergenic 40.0%
CTAAGAATCTCGACAAGAAG+GGG - chr3_1:64923013-64923032 None:intergenic 40.0%
! CTCTAAGAATCTCGACAAGA+AGG - chr3_1:64923015-64923034 None:intergenic 40.0%
CTTGTCGAGATTCTTAGAGA+CGG + chr3_1:64923016-64923035 Msa0368330:CDS 40.0%
TTGTGCTTTGATAGAACCCT+TGG + chr3_1:64923192-64923211 Msa0368330:CDS 40.0%
GCATTCATCATAATCCACCA+AGG - chr3_1:64923212-64923231 None:intergenic 40.0%
! TCTGAGGCATTTACAGCAAA+GGG + chr3_1:64923618-64923637 Msa0368330:CDS 40.0%
AGAGAAAGAGCAGTTGCTGT+TGG - chr3_1:64919646-64919665 None:intergenic 45.0%
ACGATTTGAAGGTAGGGTAG+AGG - chr3_1:64919777-64919796 None:intergenic 45.0%
TGAATAATTGGAGGAGGAGG+AGG - chr3_1:64919855-64919874 None:intergenic 45.0%
CCATGAATAATTGGAGGAGG+AGG - chr3_1:64919858-64919877 None:intergenic 45.0%
CCTCCTCCTCCAATTATTCA+TGG + chr3_1:64919855-64919874 Msa0368330:CDS 45.0%
CCCTCCTTCCCATGAATAAT+TGG - chr3_1:64919867-64919886 None:intergenic 45.0%
! TAAGAAGCTGAAGAGCACGA+CGG - chr3_1:64919946-64919965 None:intergenic 45.0%
! CGAAAACATCACAGAGGTGT+CGG + chr3_1:64920020-64920039 Msa0368330:CDS 45.0%
AGATCGAATCTCCAACACCA+TGG - chr3_1:64920367-64920386 None:intergenic 45.0%
! CTTTGCATCTCATTGGTTGG+TGG + chr3_1:64920752-64920771 Msa0368330:intron 45.0%
CTGAAGTAACCTCCTTCCTA+AGG + chr3_1:64921327-64921346 Msa0368330:intron 45.0%
GGTTAAATCACTACACCGTC+CGG - chr3_1:64921537-64921556 None:intergenic 45.0%
TACGGAGTGTGGTAGATGTA+AGG + chr3_1:64921745-64921764 Msa0368330:intron 45.0%
!! ACCCATGGTTTCTAGCTAGA+GGG + chr3_1:64921779-64921798 Msa0368330:intron 45.0%
ACCCTCTAGCTAGAAACCAT+GGG - chr3_1:64921783-64921802 None:intergenic 45.0%
GGGAGTGACCAAAATTTGTG+AGG + chr3_1:64921824-64921843 Msa0368330:intron 45.0%
GTGAGGTGTAAATGAGTTGC+AGG + chr3_1:64921841-64921860 Msa0368330:intron 45.0%
GTTATGCCAAGCAATTGCGA+AGG + chr3_1:64921894-64921913 Msa0368330:intron 45.0%
TAGGTAGTAGATGAGAGGGT+AGG - chr3_1:64921938-64921957 None:intergenic 45.0%
GTTCTTTCAACAACTCCCCT+AGG - chr3_1:64922100-64922119 None:intergenic 45.0%
! GGCACAAGTTTTCATGGTAC+TGG - chr3_1:64922168-64922187 None:intergenic 45.0%
TGCTTACATATAGGGACGGA+GGG + chr3_1:64922252-64922271 Msa0368330:intron 45.0%
! ACAGGAGGGTATGTAAAGTC+TGG - chr3_1:64922451-64922470 None:intergenic 45.0%
ATACCCTCCTGTTCAAACTC+TGG + chr3_1:64922459-64922478 Msa0368330:intron 45.0%
GATCCAGAGTTTGAACAGGA+GGG - chr3_1:64922465-64922484 None:intergenic 45.0%
TGATCCAGAGTTTGAACAGG+AGG - chr3_1:64922466-64922485 None:intergenic 45.0%
TGGTGATCCAGAGTTTGAAC+AGG - chr3_1:64922469-64922488 None:intergenic 45.0%
GTTCAAACTCTGGATCACCA+AGG + chr3_1:64922469-64922488 Msa0368330:intron 45.0%
! GCCTTATTGGGTACCTTCTA+GGG + chr3_1:64922580-64922599 Msa0368330:intron 45.0%
!! ACCCTAGAAGGTACCCAATA+AGG - chr3_1:64922584-64922603 None:intergenic 45.0%
AATCTCGACAAGAAGGGGAA+TGG - chr3_1:64923008-64923027 None:intergenic 45.0%
TGCTTTGATAGAACCCTTGG+TGG + chr3_1:64923195-64923214 Msa0368330:CDS 45.0%
TGCAAGAATACCACCTTCCT+CGG - chr3_1:64923251-64923270 None:intergenic 45.0%
GTCGTGGAGGTTCTTGAAAA+CGG + chr3_1:64923271-64923290 Msa0368330:CDS 45.0%
AAAACGGCACTCTCCAAAGT+AGG + chr3_1:64923287-64923306 Msa0368330:CDS 45.0%
AAACGGCACTCTCCAAAGTA+GGG + chr3_1:64923288-64923307 Msa0368330:CDS 45.0%
CAACAGCATGTTCCCTACTT+TGG - chr3_1:64923303-64923322 None:intergenic 45.0%
CAAAGTAGGGAACATGCTGT+TGG + chr3_1:64923301-64923320 Msa0368330:CDS 45.0%
! AGGGAACCGATTCTTAGAGA+AGG + chr3_1:64923364-64923383 Msa0368330:CDS 45.0%
!! CTTAGAGAAGGTGTCATTCC+AGG + chr3_1:64923376-64923395 Msa0368330:CDS 45.0%
CTACTTGAGCTCACTGTACA+AGG + chr3_1:64923400-64923419 Msa0368330:CDS 45.0%
!! TCGGGTTGGATTTCAGATCT+TGG - chr3_1:64923487-64923506 None:intergenic 45.0%
!! TATTCTCAAGAGTGTCGGGT+TGG - chr3_1:64923501-64923520 None:intergenic 45.0%
ATTGACGGGGATGATCAATC+TGG + chr3_1:64923544-64923563 Msa0368330:CDS 45.0%
TGAGATGGTTCAAGTCAGCA+TGG + chr3_1:64923588-64923607 Msa0368330:CDS 45.0%
TCAGCATGGAACAAAGTCTG+AGG + chr3_1:64923602-64923621 Msa0368330:CDS 45.0%
! GTCTGAGGCATTTACAGCAA+AGG + chr3_1:64923617-64923636 Msa0368330:CDS 45.0%
AGCTATAGGGAGATCACTTG+GGG - chr3_1:64923656-64923675 None:intergenic 45.0%
CAGCTATAGGGAGATCACTT+GGG - chr3_1:64923657-64923676 None:intergenic 45.0%
GTCACTAGATACCTCCACAA+TGG - chr3_1:64923841-64923860 None:intergenic 45.0%
!! TTGTGGAGGTATCTAGTGAC+TGG + chr3_1:64923841-64923860 Msa0368330:three_prime_UTR 45.0%
!!! TTTATTTTGTTTTTTATTAT+TGG + chr3_1:64920801-64920820 Msa0368330:intron 5.0%
!!! CTTTATTTTTTATTTAAAAT+CGG - chr3_1:64922645-64922664 None:intergenic 5.0%
ATATGGGGGAGAGAGAGAGA+AGG - chr3_1:64919683-64919702 None:intergenic 50.0%
!! GAGGAGTGTCCATTGTGAAG+AGG - chr3_1:64919814-64919833 None:intergenic 50.0%
GAACAGGAGGAAGGTGAATG+AGG - chr3_1:64919833-64919852 None:intergenic 50.0%
TTCAAGCCGCACGTGATATC+AGG + chr3_1:64919990-64920009 Msa0368330:CDS 50.0%
! CGTCAGTTGTCTGAAGCTGT+CGG + chr3_1:64920043-64920062 Msa0368330:CDS 50.0%
TTCTATGCTCCGAGTCGACT+CGG + chr3_1:64920075-64920094 Msa0368330:CDS 50.0%
CTCGGTTGAGTCTCATGAAC+CGG + chr3_1:64920093-64920112 Msa0368330:CDS 50.0%
CATGTGATGCCTTGAAGCCA+TGG + chr3_1:64920347-64920366 Msa0368330:intron 50.0%
ATGCCTTGAAGCCATGGTGT+TGG + chr3_1:64920353-64920372 Msa0368330:intron 50.0%
TCTCCAACACCATGGCTTCA+AGG - chr3_1:64920359-64920378 None:intergenic 50.0%
! GAAAGTGAGAGTACGGAGTG+TGG + chr3_1:64921734-64921753 Msa0368330:intron 50.0%
!! CACCCATGGTTTCTAGCTAG+AGG + chr3_1:64921778-64921797 Msa0368330:intron 50.0%
CACCCTCTAGCTAGAAACCA+TGG - chr3_1:64921784-64921803 None:intergenic 50.0%
!! CATGGTTTCTAGCTAGAGGG+TGG + chr3_1:64921782-64921801 Msa0368330:intron 50.0%
TTCCACCTTTCTTCGGTCCT+AGG + chr3_1:64922080-64922099 Msa0368330:intron 50.0%
TCCACCTTTCTTCGGTCCTA+GGG + chr3_1:64922081-64922100 Msa0368330:intron 50.0%
TGCTTACATGTAGGGACGGA+GGG - chr3_1:64922210-64922229 None:intergenic 50.0%
! AGGGTGCTTACATGTAGGGA+CGG - chr3_1:64922214-64922233 None:intergenic 50.0%
GTGCTTACATATAGGGACGG+AGG + chr3_1:64922251-64922270 Msa0368330:intron 50.0%
! ATAGGGACGGAGGGAGTATA+TGG + chr3_1:64922261-64922280 Msa0368330:intron 50.0%
TTATCAGGGGAAGGAAGCCT+TGG - chr3_1:64922489-64922508 None:intergenic 50.0%
TTCCTTCCCCTGATAACCGA+AGG + chr3_1:64922493-64922512 Msa0368330:intron 50.0%
TCCTTCCCCTGATAACCGAA+GGG + chr3_1:64922494-64922513 Msa0368330:intron 50.0%
TCTCCACCCTTCGGTTATCA+GGG - chr3_1:64922503-64922522 None:intergenic 50.0%
!! GGCCTTATTGGGTACCTTCT+AGG + chr3_1:64922579-64922598 Msa0368330:intron 50.0%
AGGTGGTATTCTTGCAGTCG+TGG + chr3_1:64923255-64923274 Msa0368330:CDS 50.0%
TGGTATTCTTGCAGTCGTGG+AGG + chr3_1:64923258-64923277 Msa0368330:CDS 50.0%
ACAGTGAGCTCAAGTAGTCC+TGG - chr3_1:64923397-64923416 None:intergenic 50.0%
!! CGCGCTTTTGTCTGAGACTT+CGG - chr3_1:64923430-64923449 None:intergenic 50.0%
CCAGCTATAGGGAGATCACT+TGG - chr3_1:64923658-64923677 None:intergenic 50.0%
CCAAGTGATCTCCCTATAGC+TGG + chr3_1:64923655-64923674 Msa0368330:CDS 50.0%
! CAGAAGCACAGCCAGCTATA+GGG - chr3_1:64923669-64923688 None:intergenic 50.0%
! TCAGAAGCACAGCCAGCTAT+AGG - chr3_1:64923670-64923689 None:intergenic 50.0%
TAGATACCTCCACAATGGCC+TGG - chr3_1:64923836-64923855 None:intergenic 50.0%
ATTGGAGGAGGAGGAGGAAC+AGG - chr3_1:64919849-64919868 None:intergenic 55.0%
! AAGCTGAAGAGCACGACGGA+CGG - chr3_1:64919942-64919961 None:intergenic 55.0%
GCTTCTTAAATCCGGCGTGC+CGG + chr3_1:64919958-64919977 Msa0368330:CDS 55.0%
GAGACTCAACCGAGTCGACT+CGG - chr3_1:64920087-64920106 None:intergenic 55.0%
! TGGGTTGGGGTGTAGAGAGT+TGG + chr3_1:64920882-64920901 Msa0368330:intron 55.0%
CCACCTTTCTTCGGTCCTAG+GGG + chr3_1:64922082-64922101 Msa0368330:intron 55.0%
ACTCCCCTAGGACCGAAGAA+AGG - chr3_1:64922088-64922107 None:intergenic 55.0%
GTGCTTACATGTAGGGACGG+AGG - chr3_1:64922211-64922230 None:intergenic 55.0%
ACCCTTCGGTTATCAGGGGA+AGG - chr3_1:64922498-64922517 None:intergenic 55.0%
TTCCCCTGATAACCGAAGGG+TGG + chr3_1:64922497-64922516 Msa0368330:intron 55.0%
CTCCACCCTTCGGTTATCAG+GGG - chr3_1:64922502-64922521 None:intergenic 55.0%
GTCTCCACCCTTCGGTTATC+AGG - chr3_1:64922504-64922523 None:intergenic 55.0%
TCTTAGAGACGGAAGCCCAC+AGG + chr3_1:64923027-64923046 Msa0368330:CDS 55.0%
CTGCATCAGCTTTCGCCTGT+GGG - chr3_1:64923045-64923064 None:intergenic 55.0%
ACTGCATCAGCTTTCGCCTG+TGG - chr3_1:64923046-64923065 None:intergenic 55.0%
GGCGAAAGCTGATGCAGTGA+TGG + chr3_1:64923048-64923067 Msa0368330:CDS 55.0%
ACCTTCCTCGGATGTCAAGG+CGG - chr3_1:64923239-64923258 None:intergenic 55.0%
ACCACCTTCCTCGGATGTCA+AGG - chr3_1:64923242-64923261 None:intergenic 55.0%
TATGCCAGTCCAGGCCATTG+TGG + chr3_1:64923824-64923843 Msa0368330:three_prime_UTR 55.0%
GAGGAGGAGGAACAGGAGGA+AGG - chr3_1:64919842-64919861 None:intergenic 60.0%
AGAGCACGACGGACGGCTAA+CGG - chr3_1:64919935-64919954 None:intergenic 60.0%
CCCCTAGGACCGAAGAAAGG+TGG - chr3_1:64922085-64922104 None:intergenic 60.0%
CAGAACCGCCTTGACATCCG+AGG + chr3_1:64923231-64923250 Msa0368330:CDS 60.0%
ACCGCCTTGACATCCGAGGA+AGG + chr3_1:64923235-64923254 Msa0368330:CDS 60.0%
GCCTTGACATCCGAGGAAGG+TGG + chr3_1:64923238-64923257 Msa0368330:CDS 60.0%
ACCTCCACAATGGCCTGGAC+TGG - chr3_1:64923831-64923850 None:intergenic 60.0%
GGAGGAGGAGGAGGAACAGG+AGG - chr3_1:64919846-64919865 None:intergenic 65.0%
AGCACGACGGACGGCTAACG+GGG - chr3_1:64919933-64919952 None:intergenic 65.0%
GAGCACGACGGACGGCTAAC+GGG - chr3_1:64919934-64919953 None:intergenic 65.0%
AATCCGGCGTGCCGGAGTTG+CGG + chr3_1:64919966-64919985 Msa0368330:CDS 65.0%
GCGGCTTGAAGCCGCAACTC+CGG - chr3_1:64919980-64919999 None:intergenic 65.0%
GCCAGTCCAGGCCATTGTGG+AGG + chr3_1:64923827-64923846 Msa0368330:three_prime_UTR 65.0%
CGGACGGCTAACGGGGTCTG+CGG - chr3_1:64919926-64919945 None:intergenic 70.0%
AAGCCGCAACTCCGGCACGC+CGG - chr3_1:64919972-64919991 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 64919638 64923976 64919638 ID=Msa0368330;Name=Msa0368330
chr3_1 mRNA 64919638 64923976 64919638 ID=Msa0368330-mRNA-1;Parent=Msa0368330;Name=Msa0368330-mRNA-1;_AED=0.00;_eAED=0.00;_QI=183|1|1|1|1|1|2|271|395
chr3_1 exon 64919638 64920155 64919638 ID=Msa0368330-mRNA-1:exon:12925;Parent=Msa0368330-mRNA-1
chr3_1 exon 64922853 64923976 64922853 ID=Msa0368330-mRNA-1:exon:12926;Parent=Msa0368330-mRNA-1
chr3_1 five_prime_UTR 64919638 64919820 64919638 ID=Msa0368330-mRNA-1:five_prime_utr;Parent=Msa0368330-mRNA-1
chr3_1 CDS 64919821 64920155 64919821 ID=Msa0368330-mRNA-1:cds;Parent=Msa0368330-mRNA-1
chr3_1 CDS 64922853 64923705 64922853 ID=Msa0368330-mRNA-1:cds;Parent=Msa0368330-mRNA-1
chr3_1 three_prime_UTR 64923706 64923976 64923706 ID=Msa0368330-mRNA-1:three_prime_utr;Parent=Msa0368330-mRNA-1
Gene Sequence

>Msa0368330

ATGGACACTCCTCATTCACCTTCCTCCTGTTCCTCCTCCTCCTCCAATTATTCATGGGAAGGAGGGCATCCTACCGACACAATTATTATAGAAGCTGAAGAGCCGCAGACCCCGTTAGCCGTCCGTCGTGCTCTTCAGCTTCTTAAATCCGGCGTGCCGGAGTTGCGGCTTCAAGCCGCACGTGATATCAGGAAACTTACGAAAACATCACAGAGGTGTCGGCGTCAGTTGTCTGAAGCTGTCGGTACGCTTGTTTCTATGCTCCGAGTCGACTCGGTTGAGTCTCATGAACCGGCTCTTCTTGCTTTGCTTAATCTCGCCGTCAAAGATGAAAAGAATAAAATCAATATTGTGGAGGCTGGAGCATTAGAACCAATACTTAGTTTCCTCAAGTCAGATAATCTAAATCTGCAGGCATCTGCAGCTGCAGCTTTGCTCACACTATCTGCCTCTTCAATCAACAAACCAATTATTAGTGGTTGTGGTGCCATTCCCCTTCTTGTCGAGATTCTTAGAGACGGAAGCCCACAGGCGAAAGCTGATGCAGTGATGGCTCTCTCTAATTTATCAACATACCCTAATAATCTTAGCATTATTCTCGAAACAAATCCAATCCCTCACATAGTTGATATCCTCAAAACATGCAAAAAGTCCTCGAAAACAGCTGAAAAATGTTGTGCTTTGATAGAACCCTTGGTGGATTATGATGAATGCAGAACCGCCTTGACATCCGAGGAAGGTGGTATTCTTGCAGTCGTGGAGGTTCTTGAAAACGGCACTCTCCAAAGTAGGGAACATGCTGTTGGAACACTATTGACAATGTGCCAAAGTGATCGATGTAAATACAGGGAACCGATTCTTAGAGAAGGTGTCATTCCAGGACTACTTGAGCTCACTGTACAAGGAACACCGAAGTCTCAGACAAAAGCGCGCACCCTTTTGCAACTACTAAGAGAATCTCCTTATCCAAGATCTGAAATCCAACCCGACACTCTTGAGAATATAGTATGCAACATCATATCTCAAATTGACGGGGATGATCAATCTGGTAAAGCAAAGAAAATGCTAGCTGAGATGGTTCAAGTCAGCATGGAACAAAGTCTGAGGCATTTACAGCAAAGGGCACTTGTATGCACCCCAAGTGATCTCCCTATAGCTGGCTGTGCTTCTGAAGTTTCTTTTAAGTAA
Protein sequence

>Msa0368330

MDTPHSPSSCSSSSSNYSWEGGHPTDTIIIEAEEPQTPLAVRRALQLLKSGVPELRLQAARDIRKLTKTSQRCRRQLSEAVGTLVSMLRVDSVESHEPALLALLNLAVKDEKNKINIVEAGALEPILSFLKSDNLNLQASAAAALLTLSASSINKPIISGCGAIPLLVEILRDGSPQAKADAVMALSNLSTYPNNLSIILETNPIPHIVDILKTCKKSSKTAEKCCALIEPLVDYDECRTALTSEEGGILAVVEVLENGTLQSREHAVGTLLTMCQSDRCKYREPILREGVIPGLLELTVQGTPKSQTKARTLLQLLRESPYPRSEIQPDTLENIVCNIISQIDGDDQSGKAKKMLAEMVQVSMEQSLRHLQQRALVCTPSDLPIAGCASEVSFK*