AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0483330

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0483330 MtrunA17_Chr3g0111451 98.987 395 4 0 1 395 1 395 0.0 787
Msa0483330 MtrunA17_Chr5g0435041 74.176 364 93 1 33 395 12 375 2.80e-180 506
Msa0483330 MtrunA17_Chr5g0429231 45.151 299 161 2 48 344 41 338 8.63e-72 228
Msa0483330 MtrunA17_Chr6g0449461 35.604 323 191 8 48 360 9 324 2.87e-45 159
Msa0483330 MtrunA17_Chr3g0134761 33.133 332 203 8 5 325 10 333 8.98e-35 131
Msa0483330 MtrunA17_Chr1g0152561 31.692 325 212 6 3 325 23 339 4.14e-32 124
Msa0483330 MtrunA17_Chr7g0261371 32.759 290 187 5 31 318 504 787 3.78e-31 125
Msa0483330 MtrunA17_Chr3g0106931 32.857 280 180 5 41 318 553 826 4.49e-31 125
Msa0483330 MtrunA17_Chr3g0137061 30.286 350 208 9 56 375 126 469 1.14e-29 119
Msa0483330 MtrunA17_Chr4g0031431 33.333 273 175 5 45 315 357 624 5.43e-29 119
Msa0483330 MtrunA17_Chr7g0237931 32.061 262 169 5 58 317 351 605 4.25e-27 113
Msa0483330 MtrunA17_Chr8g0377151 33.462 260 158 6 81 331 474 727 1.37e-26 112
Msa0483330 MtrunA17_Chr2g0284461 32.500 280 178 7 45 318 400 674 5.77e-26 110
Msa0483330 MtrunA17_Chr1g0149941 32.000 275 170 7 56 318 189 458 2.50e-25 107
Msa0483330 MtrunA17_Chr2g0290151 32.000 275 146 5 85 320 179 451 4.00e-23 100
Msa0483330 MtrunA17_Chr2g0290151 29.018 224 124 5 124 317 147 365 7.78e-11 63.5
Msa0483330 MtrunA17_Chr1g0183781 30.035 283 150 6 78 318 437 713 1.57e-22 99.8
Msa0483330 MtrunA17_Chr3g0122721 35.088 228 135 7 97 319 489 708 3.05e-20 92.8
Msa0483330 MtrunA17_Chr5g0437411 30.072 276 183 8 48 317 412 683 1.04e-19 91.3
Msa0483330 MtrunA17_Chr5g0437411 28.409 176 122 3 124 298 406 578 4.23e-11 64.7
Msa0483330 MtrunA17_Chr4g0044411 27.402 281 159 4 80 319 372 648 5.16e-19 89.0
Msa0483330 MtrunA17_Chr7g0248251 29.455 275 175 6 54 320 380 643 9.13e-18 85.1
Msa0483330 MtrunA17_Chr1g0199321 25.979 281 161 5 80 318 344 619 3.86e-16 80.1
Msa0483330 MtrunA17_Chr4g0059201 27.875 287 181 10 48 319 429 704 7.30e-14 73.6
Msa0483330 MtrunA17_Chr8g0373031 26.816 179 126 2 141 319 536 709 1.87e-13 72.0
Msa0483330 MtrunA17_Chr7g0234671 27.778 270 179 9 58 318 188 450 6.12e-13 70.1
Msa0483330 MtrunA17_Chr5g0404311 25.616 203 143 3 128 326 520 718 1.28e-12 69.7
Msa0483330 MtrunA17_Chr2g0280671 25.830 271 180 8 56 318 122 379 1.38e-12 68.6
Msa0483330 MtrunA17_Chr7g0275081 25.735 272 187 5 59 321 189 454 2.40e-12 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0483330 AT3G03440.1 70.920 337 96 2 41 375 66 402 1.93e-147 424
Msa0483330 AT4G12710.1 47.164 335 169 5 51 378 57 390 7.61e-80 251
Msa0483330 AT5G14510.1 36.449 321 189 8 48 360 9 322 4.12e-42 150
Msa0483330 AT2G23140.3 32.857 280 180 5 41 318 354 627 3.80e-35 137
Msa0483330 AT2G23140.5 32.857 280 180 5 41 318 354 627 3.80e-35 137
Msa0483330 AT2G23140.2 32.857 280 180 5 41 318 543 816 7.78e-35 137
Msa0483330 AT2G23140.4 32.857 280 180 5 41 318 543 816 7.78e-35 137
Msa0483330 AT2G23140.1 32.857 280 180 5 41 318 546 819 8.34e-35 137
Msa0483330 AT3G01400.1 34.815 270 166 6 58 325 82 343 3.41e-33 127
Msa0483330 AT5G67340.1 33.808 281 177 6 41 318 423 697 9.24e-31 124
Msa0483330 AT5G67340.2 33.808 281 177 6 41 318 423 697 9.24e-31 124
Msa0483330 AT3G54790.2 33.929 280 176 6 48 324 445 718 4.53e-30 122
Msa0483330 AT5G58680.1 34.586 266 164 7 58 319 80 339 4.75e-30 119
Msa0483330 AT3G54790.3 33.929 280 176 6 48 324 481 754 6.55e-30 122
Msa0483330 AT3G54790.1 33.929 280 176 6 48 324 481 754 6.55e-30 122
Msa0483330 AT2G25130.1 34.657 277 156 8 54 318 132 395 1.55e-27 114
Msa0483330 AT1G71020.2 33.451 284 182 6 40 320 194 473 2.38e-26 110
Msa0483330 AT1G71020.1 33.451 284 182 6 40 320 342 621 4.27e-26 110
Msa0483330 AT4G31890.3 34.182 275 163 8 56 318 160 428 2.40e-25 108
Msa0483330 AT4G31890.2 34.182 275 163 8 56 318 160 428 2.40e-25 108
Msa0483330 AT4G31890.1 34.182 275 163 8 56 318 160 428 2.40e-25 108
Msa0483330 AT1G29340.1 31.288 326 202 11 12 327 384 697 2.45e-25 108
Msa0483330 AT1G67530.2 30.986 284 177 7 54 326 439 714 2.54e-24 105
Msa0483330 AT1G67530.1 30.986 284 177 7 54 326 439 714 2.54e-24 105
Msa0483330 AT1G67530.4 30.986 284 177 7 54 326 439 714 2.54e-24 105
Msa0483330 AT3G46510.1 31.852 270 177 5 48 315 361 625 3.48e-24 105
Msa0483330 AT4G16490.1 30.175 285 149 6 85 326 189 466 3.39e-23 101
Msa0483330 AT1G24330.1 32.031 256 155 7 84 329 475 721 1.29e-22 100
Msa0483330 AT1G24330.2 32.031 256 155 7 84 329 475 721 1.29e-22 100
Msa0483330 AT3G54850.1 31.541 279 182 6 45 320 351 623 5.29e-21 95.5
Msa0483330 AT1G23030.1 27.402 281 160 5 81 320 333 610 2.44e-20 93.6
Msa0483330 AT1G27910.1 29.900 301 192 10 31 319 411 704 1.04e-18 88.6
Msa0483330 AT2G28830.1 27.306 271 188 7 48 314 292 557 1.81e-18 87.8
Msa0483330 AT5G42340.1 28.114 281 161 6 79 320 379 657 9.29e-17 82.8
Msa0483330 AT3G07360.5 27.407 270 183 6 59 320 54 318 8.93e-15 75.1
Msa0483330 AT3G07360.3 27.407 270 183 6 59 320 54 318 8.93e-15 75.1
Msa0483330 AT3G07360.9 27.407 270 183 6 59 320 54 318 8.93e-15 75.1
Msa0483330 AT3G07360.6 27.407 270 183 6 59 320 54 318 8.93e-15 75.1
Msa0483330 AT3G07360.2 27.407 270 183 6 59 320 54 318 8.93e-15 75.1
Msa0483330 AT3G07360.8 27.407 270 183 6 59 320 54 318 8.93e-15 75.1
Msa0483330 AT3G07360.10 27.407 270 183 6 59 320 54 318 8.93e-15 75.1
Msa0483330 AT3G07360.7 27.407 270 183 6 59 320 54 318 8.93e-15 75.1
Msa0483330 AT3G07360.4 27.407 270 183 6 59 320 54 318 8.93e-15 75.1
Msa0483330 AT3G07360.1 27.407 270 183 6 59 320 189 453 1.28e-14 75.5
Msa0483330 AT5G62560.1 27.239 268 171 9 63 318 258 513 1.83e-14 75.5
Msa0483330 AT1G60190.1 28.808 302 200 11 30 319 366 664 1.34e-12 69.7
Msa0483330 AT5G65200.1 26.740 273 174 8 63 319 248 510 1.58e-12 69.3
Msa0483330 AT4G21350.1 25.833 240 167 5 56 292 111 342 9.96e-11 63.2

Find 124 sgRNAs with CRISPR-Local

Find 328 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAATAATGCTAAGATTATT+AGG 0.163725 3_3:-91484491 None:intergenic
TTGTTGATAACTTAACTTAT+AGG 0.206381 3_3:-91481179 None:intergenic
CCCTCCTTCCCATGAATAAT+TGG 0.239502 3_3:-91481325 None:intergenic
GCGCCACAACCACTAATAAT+TGG 0.256313 3_3:-91484380 None:intergenic
TTCAAGCCGCACGTGATATT+AGG 0.298964 3_3:+91481451 Msa0483330:CDS
TCAGAAGCACAGCCAGCTAT+AGG 0.347463 3_3:-91485064 None:intergenic
GACAAATACATAAAGTCATA+TGG 0.361269 3_3:-91481157 None:intergenic
CTTAGAGAAGGTGTCATTCC+AGG 0.365119 3_3:+91484773 Msa0483330:CDS
ATCAACAAACCAATTATTAG+TGG 0.366264 3_3:+91484371 Msa0483330:CDS
CAACAGCATGTTCCCTACTT+TGG 0.373828 3_3:-91484697 None:intergenic
CCTCCTCCTCCAATTATTCA+TGG 0.379335 3_3:+91481316 Msa0483330:CDS
GAGCACGACGGACGGCTAAC+GGG 0.401496 3_3:-91481392 None:intergenic
CAGAAGCACAGCCAGCTATA+GGG 0.409997 3_3:-91485063 None:intergenic
ATTCTCTTAGTAGTTGCAAA+AGG 0.416206 3_3:-91484850 None:intergenic
TGGATTTCAGATCTTGGATA+AGG 0.427057 3_3:-91484875 None:intergenic
TCGGGTTGGATTTCAGATCT+TGG 0.431604 3_3:-91484881 None:intergenic
GAGGAGGAGGAACAGGAGGA+AGG 0.436210 3_3:-91481300 None:intergenic
AAAGTGATCGATGTAAATAC+AGG 0.437224 3_3:+91484741 Msa0483330:CDS
GAACAGGAGGAAGGTGAATG+AGG 0.441315 3_3:-91481291 None:intergenic
TTTATCTCACAAACCCCAAA+TGG 0.442137 3_3:-91485150 None:intergenic
TTCTATGCTCCGAGTCGACT+CGG 0.444577 3_3:+91481536 Msa0483330:CDS
GAATAATGCTAAGATTATTA+GGG 0.451130 3_3:-91484490 None:intergenic
GTCAGAAAATCTAAATCTAC+AGG 0.455369 3_3:+91484307 Msa0483330:CDS
CCAGCTATAGGGAGATCACT+TGG 0.456109 3_3:-91485052 None:intergenic
TGCTTTGATAGAACCCTTGG+TGG 0.465287 3_3:+91484592 Msa0483330:CDS
ATATCAACTATGTGAGGGAT+TGG 0.465329 3_3:-91484524 None:intergenic
ACAAATACATAAAGTCATAT+GGG 0.466442 3_3:-91481156 None:intergenic
GCTCTTCAGCTTCTTAAATC+CGG 0.467072 3_3:+91481411 Msa0483330:CDS
CTGCATCAGCTTTCGCCTGT+GGG 0.467126 3_3:-91484439 None:intergenic
AAAATCAATATTGTGGAGGC+TGG 0.467906 3_3:+91484254 Msa0483330:CDS
AAACCAATTATTAGTGGTTG+TGG 0.468936 3_3:+91484377 Msa0483330:CDS
GAGATTTGAAGGTAGGGTGG+AGG 0.469698 3_3:-91481234 None:intergenic
TTAGAGATTTGAAGGTAGGG+TGG 0.470056 3_3:-91481237 None:intergenic
CTCTAAGAATCTCGACAAGA+AGG 0.481238 3_3:-91484409 None:intergenic
AAAACGGCACTCTCCAAAGT+AGG 0.483193 3_3:+91484684 Msa0483330:CDS
TGAATAATTGGAGGAGGAGG+AGG 0.484728 3_3:-91481313 None:intergenic
CTACTTGAGCTCACTGTACA+AGG 0.484972 3_3:+91484797 Msa0483330:CDS
CTCGGTTGAGTCTCATGAAC+CGG 0.490645 3_3:+91481554 Msa0483330:CDS
ACTATATTCTCAAGAGTGTC+GGG 0.493669 3_3:-91484899 None:intergenic
ACCTCCACAATGGCCTGGAC+TGG 0.494679 3_3:-91485224 None:intergenic
AAAGAAAATGCTAGCTGAGA+TGG 0.495708 3_3:+91484970 Msa0483330:CDS
TACTATATTCTCAAGAGTGT+CGG 0.498640 3_3:-91484900 None:intergenic
GTCGTGGAGGTTCTTGAAAA+CGG 0.500560 3_3:+91484668 Msa0483330:CDS
TGTATTTACATCGATCACTT+TGG 0.506488 3_3:-91484739 None:intergenic
ACATCATATCTCAAATTGAC+GGG 0.506554 3_3:+91484927 Msa0483330:CDS
CCAAGTGATCTCCCTATAGC+TGG 0.512340 3_3:+91485052 Msa0483330:CDS
AAAATTGCTTACAATAGTAA+AGG 0.514770 3_3:+91485335 Msa0483330:three_prime_UTR
ACTGCATCAGCTTTCGCCTG+TGG 0.515865 3_3:-91484440 None:intergenic
TCTGAGGCATTTACAGCAAA+GGG 0.516038 3_3:+91485015 Msa0483330:CDS
GACTTGAGGAAACTAAGTAT+TGG 0.523232 3_3:-91484287 None:intergenic
TAGATACCTCCACAATGGCC+TGG 0.524367 3_3:-91485229 None:intergenic
ATGACACCTTCTCTAAGAAT+CGG 0.525032 3_3:-91484767 None:intergenic
GCTTCTTAAATCCGGCGTGC+CGG 0.525457 3_3:+91481419 Msa0483330:CDS
TGCAAGAATACCACCTTCCT+CGG 0.525981 3_3:-91484645 None:intergenic
TTAAGCAAAGCAAGAAGAGC+CGG 0.529207 3_3:-91481573 None:intergenic
TTCTCTTAGTAGTTGCAAAA+GGG 0.529464 3_3:-91484849 None:intergenic
ATTGACGGGGATGATCAATC+TGG 0.531432 3_3:+91484941 Msa0483330:CDS
AGGGTGGAGGTTATTTAGAG+AGG 0.532765 3_3:-91481221 None:intergenic
GTCTGAGGCATTTACAGCAA+AGG 0.533397 3_3:+91485014 Msa0483330:CDS
ACAGTGAGCTCAAGTAGTCC+TGG 0.534417 3_3:-91484791 None:intergenic
AGAGCACGACGGACGGCTAA+CGG 0.537195 3_3:-91481393 None:intergenic
CAGCTATAGGGAGATCACTT+GGG 0.537530 3_3:-91485051 None:intergenic
TCTAAGAATCTCGACAAGAA+GGG 0.542061 3_3:-91484408 None:intergenic
CCATGAATAATTGGAGGAGG+AGG 0.543600 3_3:-91481316 None:intergenic
AATCCGGCGTGCCGGAGTTG+CGG 0.545098 3_3:+91481427 Msa0483330:CDS
CTCCTCCTCCAATTATTCAT+GGG 0.546122 3_3:+91481317 Msa0483330:CDS
AGAGAAAGAGCAGTTGCTGT+TGG 0.548041 3_3:-91481103 None:intergenic
GGCGAAAGCTGATGCAGTGA+TGG 0.548563 3_3:+91484445 Msa0483330:CDS
TCCTTCCCATGAATAATTGG+AGG 0.550242 3_3:-91481322 None:intergenic
TCCAATTATTCATGGGAAGG+AGG 0.552701 3_3:+91481324 Msa0483330:CDS
TTGTGCTTTGATAGAACCCT+TGG 0.555673 3_3:+91484589 Msa0483330:CDS
CAAAGTAGGGAACATGCTGT+TGG 0.556934 3_3:+91484698 Msa0483330:CDS
ACCACCTTCCTCGGATGTCA+AGG 0.557610 3_3:-91484636 None:intergenic
GCGGCTTGAAGCCGCAACTC+CGG 0.558749 3_3:-91481438 None:intergenic
TATTCTCAAGAGTGTCGGGT+TGG 0.560573 3_3:-91484895 None:intergenic
TCCTCCAATTATTCATGGGA+AGG 0.564127 3_3:+91481321 Msa0483330:CDS
AATTGGTTTGTTGATTGAAG+AGG 0.565249 3_3:-91484363 None:intergenic
TCTATAATAATTGTGTCGGT+AGG 0.566656 3_3:-91481351 None:intergenic
CCAATTATTCATGGGAAGGA+GGG 0.567446 3_3:+91481325 Msa0483330:CDS
ATTATGAATTATGCCAGTCC+AGG 0.570094 3_3:+91485211 Msa0483330:three_prime_UTR
TTGTGGAGGTATCTAGTGAC+TGG 0.570735 3_3:+91485237 Msa0483330:three_prime_UTR
CAGGAATAAAATCAATATTG+TGG 0.571152 3_3:+91484247 Msa0483330:intron
AGCTTCTATAATAATTGTGT+CGG 0.572699 3_3:-91481355 None:intergenic
AGGTGGTATTCTTGCAGTCG+TGG 0.573719 3_3:+91484652 Msa0483330:CDS
TTGTAAGACATTAAGAAACA+TGG 0.576017 3_3:+91485279 Msa0483330:three_prime_UTR
CTAAGAATCTCGACAAGAAG+GGG 0.576621 3_3:-91484407 None:intergenic
TCTTAGAGACGGAAGCCCAC+AGG 0.580593 3_3:+91484424 Msa0483330:CDS
TGAGGATATCAACTATGTGA+GGG 0.581995 3_3:-91484529 None:intergenic
TTCCCATGAATAATTGGAGG+AGG 0.585638 3_3:-91481319 None:intergenic
CAAATACATAAAGTCATATG+GGG 0.586046 3_3:-91481155 None:intergenic
AGCACGACGGACGGCTAACG+GGG 0.589929 3_3:-91481391 None:intergenic
TTGAGGATATCAACTATGTG+AGG 0.590212 3_3:-91484530 None:intergenic
GAGACTCAACCGAGTCGACT+CGG 0.590880 3_3:-91481545 None:intergenic
TATGCCAGTCCAGGCCATTG+TGG 0.592164 3_3:+91485220 Msa0483330:three_prime_UTR
AATCTCGACAAGAAGGGGAA+TGG 0.593813 3_3:-91484402 None:intergenic
AAGCTGAAGAGCACGACGGA+CGG 0.604497 3_3:-91481400 None:intergenic
CGTCAGTTGTCTGAAGCTGT+CGG 0.607472 3_3:+91481504 Msa0483330:CDS
CGAAAACATCACAGAGGTGT+CGG 0.611962 3_3:+91481481 Msa0483330:CDS
AACATCATATCTCAAATTGA+CGG 0.612026 3_3:+91484926 Msa0483330:CDS
GCCAGTCCAGGCCATTGTGG+AGG 0.613077 3_3:+91485223 Msa0483330:three_prime_UTR
AAGCCGCAACTCCGGCACGC+CGG 0.613231 3_3:-91481430 None:intergenic
CTTGTCGAGATTCTTAGAGA+CGG 0.615547 3_3:+91484413 Msa0483330:CDS
TTTCTCTCACCTCTTCACAA+TGG 0.622249 3_3:+91481263 Msa0483330:exon
AAACGGCACTCTCCAAAGTA+GGG 0.624721 3_3:+91484685 Msa0483330:CDS
AGCTATAGGGAGATCACTTG+GGG 0.628255 3_3:-91485050 None:intergenic
ACTGCCTTGACATCCGAGGA+AGG 0.630442 3_3:+91484632 Msa0483330:CDS
CATTCATCATAGTCCACCAA+GGG 0.639137 3_3:-91484605 None:intergenic
TGGTATTCTTGCAGTCGTGG+AGG 0.644268 3_3:+91484655 Msa0483330:CDS
GAATAAAATCAATATTGTGG+AGG 0.645985 3_3:+91484250 Msa0483330:CDS
CAGAACTGCCTTGACATCCG+AGG 0.646248 3_3:+91484628 Msa0483330:CDS
AGGGAACCGATTCTTAGAGA+AGG 0.647481 3_3:+91484761 Msa0483330:CDS
AAGTTTCCTAATATCACGTG+CGG 0.647498 3_3:-91481457 None:intergenic
AAGTGATCGATGTAAATACA+GGG 0.660329 3_3:+91484742 Msa0483330:CDS
CATCATATCTCAAATTGACG+GGG 0.663210 3_3:+91484928 Msa0483330:CDS
TGAGATGGTTCAAGTCAGCA+TGG 0.664334 3_3:+91484985 Msa0483330:CDS
TCAGCATGGAACAAAGTCTG+AGG 0.668450 3_3:+91484999 Msa0483330:CDS
GCATTCATCATAGTCCACCA+AGG 0.671799 3_3:-91484606 None:intergenic
CGGACGGCTAACGGGGTCTG+CGG 0.676544 3_3:-91481384 None:intergenic
GAGGAGTGTCCATTGTGAAG+AGG 0.676784 3_3:-91481272 None:intergenic
GTCACTAGATACCTCCACAA+TGG 0.692250 3_3:-91485234 None:intergenic
AAATACATAAAGTCATATGG+GGG 0.701924 3_3:-91481154 None:intergenic
GCCTTGACATCCGAGGAAGG+TGG 0.723996 3_3:+91484635 Msa0483330:CDS
TAAGAAGCTGAAGAGCACGA+CGG 0.746959 3_3:-91481404 None:intergenic
AACTTACGAAAACATCACAG+AGG 0.790561 3_3:+91481475 Msa0483330:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAAAATTAAT+TGG + chr3_3:91481659-91481678 Msa0483330:intron 0.0%
!!! CTTTATTTTTTATTTAAAGT+CGG - chr3_3:91484042-91484061 None:intergenic 10.0%
!! AAAATTTCTATAGAAAAAAA+AGG + chr3_3:91485170-91485189 Msa0483330:three_prime_UTR 10.0%
!! AAATTTCTATAGAAAAAAAA+GGG + chr3_3:91485171-91485190 Msa0483330:three_prime_UTR 10.0%
!!! TTTTTTTGTGTATAGATTAT+TGG + chr3_3:91481688-91481707 Msa0483330:intron 15.0%
!!! ATTTGTATAAGAATTTTTCT+TGG + chr3_3:91482143-91482162 Msa0483330:intron 15.0%
!!! TATTTTCCTTTTATTTTTCA+TGG + chr3_3:91482515-91482534 Msa0483330:intron 15.0%
!! AAAAAAAAAGTTTATCCAAT+TGG + chr3_3:91482683-91482702 Msa0483330:intron 15.0%
!!! AACAAACAAGATAATATTTT+TGG - chr3_3:91484127-91484146 None:intergenic 15.0%
!! ACAAATACATAAAGTCATAT+GGG - chr3_3:91481159-91481178 None:intergenic 20.0%
!!! TTGTTGATAACTTAACTTAT+AGG - chr3_3:91481182-91481201 None:intergenic 20.0%
!!! ATTTTCTTAGAAATTTCTTG+TGG - chr3_3:91481637-91481656 None:intergenic 20.0%
!!! TTTTTTGCATAAGAATGATA+AGG + chr3_3:91481964-91481983 Msa0483330:intron 20.0%
!! GGAAAAAAAAGAAAATGAAA+GGG - chr3_3:91482188-91482207 None:intergenic 20.0%
!! TGGAAAAAAAAGAAAATGAA+AGG - chr3_3:91482189-91482208 None:intergenic 20.0%
!! GAAAATATAGAAAATTTGAG+TGG + chr3_3:91482235-91482254 Msa0483330:intron 20.0%
!!! AGATAGTTTGTTAAGAATAA+TGG + chr3_3:91482322-91482341 Msa0483330:intron 20.0%
!!! GATAGTTTGTTAAGAATAAT+GGG + chr3_3:91482323-91482342 Msa0483330:intron 20.0%
!!! ACTTTTTTTTTTAGAGGAAT+TGG - chr3_3:91482674-91482693 None:intergenic 20.0%
!!! GGATAAACTTTTTTTTTTAG+AGG - chr3_3:91482680-91482699 None:intergenic 20.0%
!! AGTAGGAAAAAAAAATACAA+AGG - chr3_3:91482964-91482983 None:intergenic 20.0%
!! TGCAGAGATATTTAATAAAT+TGG + chr3_3:91483007-91483026 Msa0483330:intron 20.0%
!! GCAGAGATATTTAATAAATT+GGG + chr3_3:91483008-91483027 Msa0483330:intron 20.0%
!!! GAATTTTGATTTCTTTTGTT+TGG + chr3_3:91484064-91484083 Msa0483330:intron 20.0%
!! AATTCAATCATATTCATAAC+TGG + chr3_3:91484214-91484233 Msa0483330:intron 20.0%
!! GAATAATGCTAAGATTATTA+GGG - chr3_3:91484493-91484512 None:intergenic 20.0%
!! AGAATAATGCTAAGATTATT+AGG - chr3_3:91484494-91484513 None:intergenic 20.0%
!!! CTTATTTTGTTTTTCCATTT+GGG + chr3_3:91485136-91485155 Msa0483330:three_prime_UTR 20.0%
!!! TTATTTTGTTTTTCCATTTG+GGG + chr3_3:91485137-91485156 Msa0483330:three_prime_UTR 20.0%
!! ATAGAAAAAAAAGGGAAAAA+AGG + chr3_3:91485179-91485198 Msa0483330:three_prime_UTR 20.0%
!! TAGAAAAAAAAGGGAAAAAA+GGG + chr3_3:91485180-91485199 Msa0483330:three_prime_UTR 20.0%
!! AAAATTGCTTACAATAGTAA+AGG + chr3_3:91485335-91485354 Msa0483330:three_prime_UTR 20.0%
! AAATACATAAAGTCATATGG+GGG - chr3_3:91481157-91481176 None:intergenic 25.0%
! CAAATACATAAAGTCATATG+GGG - chr3_3:91481158-91481177 None:intergenic 25.0%
! GACAAATACATAAAGTCATA+TGG - chr3_3:91481160-91481179 None:intergenic 25.0%
!!! AGAAAGTTTTAGAGATTTGA+AGG - chr3_3:91481248-91481267 None:intergenic 25.0%
! AGCTTCTATAATAATTGTGT+CGG - chr3_3:91481358-91481377 None:intergenic 25.0%
!!! TTTGTTAAGAATAATGGGTT+GGG + chr3_3:91482328-91482347 Msa0483330:intron 25.0%
! TCTTATTCTTATGTCAAAGA+TGG - chr3_3:91482381-91482400 None:intergenic 25.0%
! AATATGACATCAGAAAGAAT+TGG + chr3_3:91482627-91482646 Msa0483330:intron 25.0%
! CTTAAAGGAAAAGAAACAAA+AGG - chr3_3:91482752-91482771 None:intergenic 25.0%
! AAAAAAAAATACAAAGGTGG+TGG - chr3_3:91482958-91482977 None:intergenic 25.0%
! AGGAAAAAAAAATACAAAGG+TGG - chr3_3:91482961-91482980 None:intergenic 25.0%
! TATTTAATAAATTGGGACAC+AGG + chr3_3:91483015-91483034 Msa0483330:intron 25.0%
! TTATGCGTGTTCAAAAATAA+AGG + chr3_3:91483110-91483129 Msa0483330:intron 25.0%
! TATGCGTGTTCAAAAATAAA+GGG + chr3_3:91483111-91483130 Msa0483330:intron 25.0%
! AAGCCAAAACAAGAAATTTA+AGG - chr3_3:91483378-91483397 None:intergenic 25.0%
! TTAATTCAATAACCACTTTG+CGG - chr3_3:91483536-91483555 None:intergenic 25.0%
! AAAGTAAAATTTAATTCCCC+TGG - chr3_3:91483718-91483737 None:intergenic 25.0%
!! AGGGGAATTAAATTTTACTT+TGG + chr3_3:91483717-91483736 Msa0483330:intron 25.0%
! TTGTTAAGTAGATAATCGTT+TGG + chr3_3:91483794-91483813 Msa0483330:intron 25.0%
! TGTTAAGTAGATAATCGTTT+GGG + chr3_3:91483795-91483814 Msa0483330:intron 25.0%
! TGAAATTTATTGCTATAGAC+CGG + chr3_3:91484006-91484025 Msa0483330:intron 25.0%
!! ATCTGAAATAAAGAGCAAAA+AGG - chr3_3:91484153-91484172 None:intergenic 25.0%
! CAAAAAGTTAATCAATACTG+TGG - chr3_3:91484177-91484196 None:intergenic 25.0%
! CAGGAATAAAATCAATATTG+TGG + chr3_3:91484247-91484266 Msa0483330:intron 25.0%
! GAATAAAATCAATATTGTGG+AGG + chr3_3:91484250-91484269 Msa0483330:CDS 25.0%
! ATCAACAAACCAATTATTAG+TGG + chr3_3:91484371-91484390 Msa0483330:CDS 25.0%
! AACATCATATCTCAAATTGA+CGG + chr3_3:91484926-91484945 Msa0483330:CDS 25.0%
!!! TTTTAAGTAATAGTTGCACT+TGG + chr3_3:91485093-91485112 Msa0483330:exon 25.0%
! CCAAATGGAAAAACAAAATA+AGG - chr3_3:91485138-91485157 None:intergenic 25.0%
!!! CCTTATTTTGTTTTTCCATT+TGG + chr3_3:91485135-91485154 Msa0483330:three_prime_UTR 25.0%
! TTGTAAGACATTAAGAAACA+TGG + chr3_3:91485279-91485298 Msa0483330:three_prime_UTR 25.0%
!!! GTTTTAGAGATTTGAAGGTA+GGG - chr3_3:91481243-91481262 None:intergenic 30.0%
!!! AGTTTTAGAGATTTGAAGGT+AGG - chr3_3:91481244-91481263 None:intergenic 30.0%
! TCTATAATAATTGTGTCGGT+AGG - chr3_3:91481354-91481373 None:intergenic 30.0%
!! AGCTTACTTTTCATCTTTGA+CGG - chr3_3:91481604-91481623 None:intergenic 30.0%
TGTGTATAGATTATTGGTAG+TGG + chr3_3:91481694-91481713 Msa0483330:intron 30.0%
!!! TTGAACGTGCTTTTGATTTA+TGG + chr3_3:91481759-91481778 Msa0483330:intron 30.0%
!!! TGAACGTGCTTTTGATTTAT+GGG + chr3_3:91481760-91481779 Msa0483330:intron 30.0%
TTGCATAATCAATTCCTTTC+TGG + chr3_3:91482068-91482087 Msa0483330:intron 30.0%
TTGCATACAAGTAGCATATA+CGG + chr3_3:91482095-91482114 Msa0483330:intron 30.0%
CTTAACAAACTATCTAGTCT+AGG - chr3_3:91482317-91482336 None:intergenic 30.0%
!! GTTTGTTAAGAATAATGGGT+TGG + chr3_3:91482327-91482346 Msa0483330:intron 30.0%
!! TTGTTAAGAATAATGGGTTG+GGG + chr3_3:91482329-91482348 Msa0483330:intron 30.0%
TAAGCAAAGTCATGAAAAAG+TGG - chr3_3:91482407-91482426 None:intergenic 30.0%
!! CTTTTTCATGACTTTGCTTA+TGG + chr3_3:91482407-91482426 Msa0483330:intron 30.0%
ACAGAAAAACACCAATTTCA+TGG - chr3_3:91482493-91482512 None:intergenic 30.0%
!!! TCCTTTTATTTTTCATGGTG+AGG + chr3_3:91482520-91482539 Msa0483330:intron 30.0%
TCCTCACCATGAAAAATAAA+AGG - chr3_3:91482524-91482543 None:intergenic 30.0%
AAGTTTATCCAATTGGATAG+TGG + chr3_3:91482690-91482709 Msa0483330:intron 30.0%
AAGAAAATCCACTATCCAAT+TGG - chr3_3:91482701-91482720 None:intergenic 30.0%
!!! ATTGGATAGTGGATTTTCTT+TGG + chr3_3:91482701-91482720 Msa0483330:intron 30.0%
CAGAAAGAAGATAAGCTTAA+AGG - chr3_3:91482767-91482786 None:intergenic 30.0%
ATGAGAACAATTAGAACCTT+AGG - chr3_3:91482803-91482822 None:intergenic 30.0%
TCTACAACTCAGATGATAAA+AGG + chr3_3:91482983-91483002 Msa0483330:intron 30.0%
! TAACCTCTTTTCTTTTTCCA+AGG - chr3_3:91483093-91483112 None:intergenic 30.0%
GAAAATCACTTTCATGCTAT+GGG + chr3_3:91483203-91483222 Msa0483330:intron 30.0%
! CATTTACACCTCACAAATTT+TGG - chr3_3:91483234-91483253 None:intergenic 30.0%
CATAACAAAAATGTAGGGTA+GGG - chr3_3:91483279-91483298 None:intergenic 30.0%
CTTGGCATAACAAAAATGTA+GGG - chr3_3:91483284-91483303 None:intergenic 30.0%
!! TGGCCTTAAATTTCTTGTTT+TGG + chr3_3:91483372-91483391 Msa0483330:intron 30.0%
!! TAGATGCTTTTTGAGAAGAA+AGG + chr3_3:91483426-91483445 Msa0483330:intron 30.0%
! GGAGTATTTATTTCTTTGCT+AGG - chr3_3:91483588-91483607 None:intergenic 30.0%
! ACCTTTTGCCTCTAATAAAA+GGG - chr3_3:91483632-91483651 None:intergenic 30.0%
AAGATGCAAGAAACTAATCA+TGG - chr3_3:91483955-91483974 None:intergenic 30.0%
!! TGATTAGTTTCTTGCATCTT+AGG + chr3_3:91483955-91483974 Msa0483330:intron 30.0%
!! TGGTATATCATGTTGCTTTA+TGG + chr3_3:91484084-91484103 Msa0483330:intron 30.0%
!! GATTTAGATTTTCTGACTTG+AGG - chr3_3:91484304-91484323 None:intergenic 30.0%
GTCAGAAAATCTAAATCTAC+AGG + chr3_3:91484307-91484326 Msa0483330:CDS 30.0%
!! AATTGGTTTGTTGATTGAAG+AGG - chr3_3:91484366-91484385 None:intergenic 30.0%
AAACCAATTATTAGTGGTTG+TGG + chr3_3:91484377-91484396 Msa0483330:CDS 30.0%
TGTATTTACATCGATCACTT+TGG - chr3_3:91484742-91484761 None:intergenic 30.0%
AAAGTGATCGATGTAAATAC+AGG + chr3_3:91484741-91484760 Msa0483330:CDS 30.0%
AAGTGATCGATGTAAATACA+GGG + chr3_3:91484742-91484761 Msa0483330:CDS 30.0%
TTCTCTTAGTAGTTGCAAAA+GGG - chr3_3:91484852-91484871 None:intergenic 30.0%
ATTCTCTTAGTAGTTGCAAA+AGG - chr3_3:91484853-91484872 None:intergenic 30.0%
! TACTATATTCTCAAGAGTGT+CGG - chr3_3:91484903-91484922 None:intergenic 30.0%
ACATCATATCTCAAATTGAC+GGG + chr3_3:91484927-91484946 Msa0483330:CDS 30.0%
!!! AAGAAACATGGTTTTGTAGT+TGG + chr3_3:91485291-91485310 Msa0483330:three_prime_UTR 30.0%
AAGTTTCCTAATATCACGTG+CGG - chr3_3:91481460-91481479 None:intergenic 35.0%
AACTTACGAAAACATCACAG+AGG + chr3_3:91481475-91481494 Msa0483330:CDS 35.0%
ATGCAAAAAACGCTATGCTT+AGG - chr3_3:91481954-91481973 None:intergenic 35.0%
AGAATGATAAGGAGAAGACA+TGG + chr3_3:91481975-91481994 Msa0483330:intron 35.0%
TTGTATGCAAAGATCCAGAA+AGG - chr3_3:91482085-91482104 None:intergenic 35.0%
ACAAGTAGCATATACGGTTT+AGG + chr3_3:91482101-91482120 Msa0483330:intron 35.0%
TCTTGGATTCTGTTCTTTGT+TGG + chr3_3:91482160-91482179 Msa0483330:intron 35.0%
CTTGGATTCTGTTCTTTGTT+GGG + chr3_3:91482161-91482180 Msa0483330:intron 35.0%
TCCATATCTTTGCATCTCAT+TGG + chr3_3:91482205-91482224 Msa0483330:intron 35.0%
ACCAATGAGATGCAAAGATA+TGG - chr3_3:91482209-91482228 None:intergenic 35.0%
TATCTTTGCATCTCATTGGT+TGG + chr3_3:91482209-91482228 Msa0483330:intron 35.0%
! GTCTAGGTTGAAAGAAAGAA+TGG - chr3_3:91482301-91482320 None:intergenic 35.0%
ATGACTTTGCTTATGGTACT+TGG + chr3_3:91482414-91482433 Msa0483330:intron 35.0%
CAGAAGATAAGCCATGAAAT+TGG + chr3_3:91482479-91482498 Msa0483330:intron 35.0%
CATCTTAGTTGACATTCTAG+TGG - chr3_3:91482563-91482582 None:intergenic 35.0%
!! TGGATTTTCTTTGGTTCACT+TGG + chr3_3:91482710-91482729 Msa0483330:intron 35.0%
!! ATTTTCTTTGGTTCACTTGG+TGG + chr3_3:91482713-91482732 Msa0483330:intron 35.0%
GAACAATTAGAACCTTAGGA+AGG - chr3_3:91482799-91482818 None:intergenic 35.0%
TATCATCTGAGTTGTAGAGT+AGG - chr3_3:91482981-91483000 None:intergenic 35.0%
! ATTTTCCATTTCTCAGCACT+TGG + chr3_3:91483050-91483069 Msa0483330:intron 35.0%
!! TAATACCAAGTGCTGAGAAA+TGG - chr3_3:91483058-91483077 None:intergenic 35.0%
TATTATGTGGCTAAGTTCCT+TGG + chr3_3:91483073-91483092 Msa0483330:intron 35.0%
GTTCCTTGGAAAAAGAAAAG+AGG + chr3_3:91483087-91483106 Msa0483330:intron 35.0%
ATAAAGGGAAAGTGAGAGTA+CGG + chr3_3:91483126-91483145 Msa0483330:intron 35.0%
!!! AAGGTATTGATTTTCACCCA+TGG + chr3_3:91483163-91483182 Msa0483330:intron 35.0%
GGAAAATCACTTTCATGCTA+TGG + chr3_3:91483202-91483221 Msa0483330:intron 35.0%
GCATAACAAAAATGTAGGGT+AGG - chr3_3:91483280-91483299 None:intergenic 35.0%
GCTTGGCATAACAAAAATGT+AGG - chr3_3:91483285-91483304 None:intergenic 35.0%
TTATGCCAAGCAATTGTGAA+GGG + chr3_3:91483294-91483313 Msa0483330:intron 35.0%
AAAATCCCTTCACAATTGCT+TGG - chr3_3:91483302-91483321 None:intergenic 35.0%
CATATAGGTAGTAGATGAGA+GGG - chr3_3:91483341-91483360 None:intergenic 35.0%
ACCTATATGCAAAACAAGCA+TGG + chr3_3:91483352-91483371 Msa0483330:intron 35.0%
!! TAAAAGGGTGCTTACATGTA+GGG - chr3_3:91483617-91483636 None:intergenic 35.0%
!! ATAAAAGGGTGCTTACATGT+AGG - chr3_3:91483618-91483637 None:intergenic 35.0%
! TGTAAGCACCCTTTTATTAG+AGG + chr3_3:91483621-91483640 Msa0483330:intron 35.0%
! ACCCTTTTATTAGAGGCAAA+AGG + chr3_3:91483628-91483647 Msa0483330:intron 35.0%
! CACCTTTTGCCTCTAATAAA+AGG - chr3_3:91483633-91483652 None:intergenic 35.0%
!! GCAAAAGGTGCTTACATATA+GGG + chr3_3:91483643-91483662 Msa0483330:intron 35.0%
ATCACAAGATTGTTAAGCCA+GGG + chr3_3:91483698-91483717 Msa0483330:intron 35.0%
! AATGAATGATAAGAGTGCAG+AGG - chr3_3:91483747-91483766 None:intergenic 35.0%
GGAGAACCAGATTTCAAATA+TGG + chr3_3:91483816-91483835 Msa0483330:intron 35.0%
ACCAGATTTCAAATATGGAC+CGG + chr3_3:91483821-91483840 Msa0483330:intron 35.0%
!!! AATTTTTTGTCTCCACCCTT+CGG - chr3_3:91483909-91483928 None:intergenic 35.0%
AATTTCAATCACACCCTAGA+AGG - chr3_3:91483993-91484012 None:intergenic 35.0%
AAAATCAATATTGTGGAGGC+TGG + chr3_3:91484254-91484273 Msa0483330:CDS 35.0%
GACTTGAGGAAACTAAGTAT+TGG - chr3_3:91484290-91484309 None:intergenic 35.0%
TCTAAGAATCTCGACAAGAA+GGG - chr3_3:91484411-91484430 None:intergenic 35.0%
ATATCAACTATGTGAGGGAT+TGG - chr3_3:91484527-91484546 None:intergenic 35.0%
TGAGGATATCAACTATGTGA+GGG - chr3_3:91484532-91484551 None:intergenic 35.0%
TTGAGGATATCAACTATGTG+AGG - chr3_3:91484533-91484552 None:intergenic 35.0%
! AGGACTTTTTGCATGTTTTG+AGG - chr3_3:91484550-91484569 None:intergenic 35.0%
!! ACATTTTTCAGCTGTTTTCG+AGG - chr3_3:91484570-91484589 None:intergenic 35.0%
! ATGACACCTTCTCTAAGAAT+CGG - chr3_3:91484770-91484789 None:intergenic 35.0%
TGGATTTCAGATCTTGGATA+AGG - chr3_3:91484878-91484897 None:intergenic 35.0%
!! ACTATATTCTCAAGAGTGTC+GGG - chr3_3:91484902-91484921 None:intergenic 35.0%
CATCATATCTCAAATTGACG+GGG + chr3_3:91484928-91484947 Msa0483330:CDS 35.0%
AAAGAAAATGCTAGCTGAGA+TGG + chr3_3:91484970-91484989 Msa0483330:CDS 35.0%
TTTATCTCACAAACCCCAAA+TGG - chr3_3:91485153-91485172 None:intergenic 35.0%
ATTATGAATTATGCCAGTCC+AGG + chr3_3:91485211-91485230 Msa0483330:three_prime_UTR 35.0%
TTAGAGATTTGAAGGTAGGG+TGG - chr3_3:91481240-91481259 None:intergenic 40.0%
TTTCTCTCACCTCTTCACAA+TGG + chr3_3:91481263-91481282 Msa0483330:exon 40.0%
CTCCTCCTCCAATTATTCAT+GGG + chr3_3:91481317-91481336 Msa0483330:CDS 40.0%
TTCCCATGAATAATTGGAGG+AGG - chr3_3:91481322-91481341 None:intergenic 40.0%
TCCTCCAATTATTCATGGGA+AGG + chr3_3:91481321-91481340 Msa0483330:CDS 40.0%
TCCTTCCCATGAATAATTGG+AGG - chr3_3:91481325-91481344 None:intergenic 40.0%
TCCAATTATTCATGGGAAGG+AGG + chr3_3:91481324-91481343 Msa0483330:CDS 40.0%
CCAATTATTCATGGGAAGGA+GGG + chr3_3:91481325-91481344 Msa0483330:CDS 40.0%
GCTCTTCAGCTTCTTAAATC+CGG + chr3_3:91481411-91481430 Msa0483330:CDS 40.0%
TTAAGCAAAGCAAGAAGAGC+CGG - chr3_3:91481576-91481595 None:intergenic 40.0%
! TTTGCATCTCATTGGTTGGT+GGG + chr3_3:91482213-91482232 Msa0483330:intron 40.0%
CTAGTGGTCATAAGATGACA+TGG - chr3_3:91482547-91482566 None:intergenic 40.0%
CAATTAGAACCTTAGGAAGG+AGG - chr3_3:91482796-91482815 None:intergenic 40.0%
TCTCAGCACTTGGTATTATG+TGG + chr3_3:91483060-91483079 Msa0483330:intron 40.0%
AACAAAAATGTAGGGTAGGG+AGG - chr3_3:91483276-91483295 None:intergenic 40.0%
GTTATGCCAAGCAATTGTGA+AGG + chr3_3:91483293-91483312 Msa0483330:intron 40.0%
AGATGAGAGGGTAGGTAATT+TGG - chr3_3:91483329-91483348 None:intergenic 40.0%
GCATATAGGTAGTAGATGAG+AGG - chr3_3:91483342-91483361 None:intergenic 40.0%
!!! GCCATGCTTGTTTTGCATAT+AGG - chr3_3:91483356-91483375 None:intergenic 40.0%
AAAGGTGGAAATGAGAGAGA+TGG - chr3_3:91483469-91483488 None:intergenic 40.0%
CTCTCATTTCCACCTTTCTT+CGG + chr3_3:91483472-91483491 Msa0483330:intron 40.0%
ATATTTGTCCAACCGCAAAG+TGG + chr3_3:91483521-91483540 Msa0483330:intron 40.0%
TTCAATAACCACTTTGCGGT+TGG - chr3_3:91483532-91483551 None:intergenic 40.0%
! TTGCTAGGCACAAGTTTTCA+TGG - chr3_3:91483573-91483592 None:intergenic 40.0%
!! GGCAAAAGGTGCTTACATAT+AGG + chr3_3:91483642-91483661 Msa0483330:intron 40.0%
! AAGGTGCTTACATATAGGGA+CGG + chr3_3:91483647-91483666 Msa0483330:intron 40.0%
CTGGCTTAACAATCTTGTGA+TGG - chr3_3:91483699-91483718 None:intergenic 40.0%
CATCACAAGATTGTTAAGCC+AGG + chr3_3:91483697-91483716 Msa0483330:intron 40.0%
TCACAAGATTGTTAAGCCAG+GGG + chr3_3:91483699-91483718 Msa0483330:intron 40.0%
! TCCGGTCCATATTTGAAATC+TGG - chr3_3:91483825-91483844 None:intergenic 40.0%
! GGTATGTAAAGTCTGGTTTC+CGG - chr3_3:91483843-91483862 None:intergenic 40.0%
! TCTTGCATCTTAGGCCTTAT+TGG + chr3_3:91483964-91483983 Msa0483330:intron 40.0%
!! CTTGCATCTTAGGCCTTATT+GGG + chr3_3:91483965-91483984 Msa0483330:intron 40.0%
TAAAGTCGGAGTTCATTCTC+CGG - chr3_3:91484028-91484047 None:intergenic 40.0%
!! CATAACTGGTCTTATCTTGC+AGG + chr3_3:91484228-91484247 Msa0483330:intron 40.0%
CTAAGAATCTCGACAAGAAG+GGG - chr3_3:91484410-91484429 None:intergenic 40.0%
! CTCTAAGAATCTCGACAAGA+AGG - chr3_3:91484412-91484431 None:intergenic 40.0%
CTTGTCGAGATTCTTAGAGA+CGG + chr3_3:91484413-91484432 Msa0483330:CDS 40.0%
TTGTGCTTTGATAGAACCCT+TGG + chr3_3:91484589-91484608 Msa0483330:CDS 40.0%
CATTCATCATAGTCCACCAA+GGG - chr3_3:91484608-91484627 None:intergenic 40.0%
! TCTGAGGCATTTACAGCAAA+GGG + chr3_3:91485015-91485034 Msa0483330:CDS 40.0%
AGAGAAAGAGCAGTTGCTGT+TGG - chr3_3:91481106-91481125 None:intergenic 45.0%
AGGGTGGAGGTTATTTAGAG+AGG - chr3_3:91481224-91481243 None:intergenic 45.0%
TGAATAATTGGAGGAGGAGG+AGG - chr3_3:91481316-91481335 None:intergenic 45.0%
CCATGAATAATTGGAGGAGG+AGG - chr3_3:91481319-91481338 None:intergenic 45.0%
CCTCCTCCTCCAATTATTCA+TGG + chr3_3:91481316-91481335 Msa0483330:CDS 45.0%
CCCTCCTTCCCATGAATAAT+TGG - chr3_3:91481328-91481347 None:intergenic 45.0%
! TAAGAAGCTGAAGAGCACGA+CGG - chr3_3:91481407-91481426 None:intergenic 45.0%
TTCAAGCCGCACGTGATATT+AGG + chr3_3:91481451-91481470 Msa0483330:CDS 45.0%
! CGAAAACATCACAGAGGTGT+CGG + chr3_3:91481481-91481500 Msa0483330:CDS 45.0%
AGATCGAATCTCCAACACCA+TGG - chr3_3:91481827-91481846 None:intergenic 45.0%
! CTTTGCATCTCATTGGTTGG+TGG + chr3_3:91482212-91482231 Msa0483330:intron 45.0%
CTGAAGTAACCTCCTTCCTA+AGG + chr3_3:91482784-91482803 Msa0483330:intron 45.0%
TACGGAGTGTGGTAGAAGTA+AGG + chr3_3:91483144-91483163 Msa0483330:intron 45.0%
!! ACCCATGGTTTCTAGCTAGA+GGG + chr3_3:91483178-91483197 Msa0483330:intron 45.0%
ACCCTCTAGCTAGAAACCAT+GGG - chr3_3:91483182-91483201 None:intergenic 45.0%
GGGAGTGACCAAAATTTGTG+AGG + chr3_3:91483223-91483242 Msa0483330:intron 45.0%
GTGAGGTGTAAATGAGTTGC+AGG + chr3_3:91483240-91483259 Msa0483330:intron 45.0%
TAGGTAGTAGATGAGAGGGT+AGG - chr3_3:91483337-91483356 None:intergenic 45.0%
GTTCTTTCAACAACTCCCCT+AGG - chr3_3:91483499-91483518 None:intergenic 45.0%
! GGCACAAGTTTTCATGGTAC+TGG - chr3_3:91483567-91483586 None:intergenic 45.0%
TGCTTACATATAGGGACGGA+GGG + chr3_3:91483651-91483670 Msa0483330:intron 45.0%
! ACAGGAGGGTATGTAAAGTC+TGG - chr3_3:91483850-91483869 None:intergenic 45.0%
ATACCCTCCTGTTCAAACTC+TGG + chr3_3:91483858-91483877 Msa0483330:intron 45.0%
GATCCAGAGTTTGAACAGGA+GGG - chr3_3:91483864-91483883 None:intergenic 45.0%
TGATCCAGAGTTTGAACAGG+AGG - chr3_3:91483865-91483884 None:intergenic 45.0%
TGGTGATCCAGAGTTTGAAC+AGG - chr3_3:91483868-91483887 None:intergenic 45.0%
GTTCAAACTCTGGATCACCA+AGG + chr3_3:91483868-91483887 Msa0483330:intron 45.0%
CTTCCTTCCTGATAACCGAA+GGG + chr3_3:91483891-91483910 Msa0483330:intron 45.0%
! GCCTTATTGGGTACCTTCTA+GGG + chr3_3:91483977-91483996 Msa0483330:intron 45.0%
!! ACCCTAGAAGGTACCCAATA+AGG - chr3_3:91483981-91484000 None:intergenic 45.0%
GCGCCACAACCACTAATAAT+TGG - chr3_3:91484383-91484402 None:intergenic 45.0%
AATCTCGACAAGAAGGGGAA+TGG - chr3_3:91484405-91484424 None:intergenic 45.0%
TGCTTTGATAGAACCCTTGG+TGG + chr3_3:91484592-91484611 Msa0483330:CDS 45.0%
GCATTCATCATAGTCCACCA+AGG - chr3_3:91484609-91484628 None:intergenic 45.0%
TGCAAGAATACCACCTTCCT+CGG - chr3_3:91484648-91484667 None:intergenic 45.0%
GTCGTGGAGGTTCTTGAAAA+CGG + chr3_3:91484668-91484687 Msa0483330:CDS 45.0%
AAAACGGCACTCTCCAAAGT+AGG + chr3_3:91484684-91484703 Msa0483330:CDS 45.0%
AAACGGCACTCTCCAAAGTA+GGG + chr3_3:91484685-91484704 Msa0483330:CDS 45.0%
CAACAGCATGTTCCCTACTT+TGG - chr3_3:91484700-91484719 None:intergenic 45.0%
CAAAGTAGGGAACATGCTGT+TGG + chr3_3:91484698-91484717 Msa0483330:CDS 45.0%
! AGGGAACCGATTCTTAGAGA+AGG + chr3_3:91484761-91484780 Msa0483330:CDS 45.0%
!! CTTAGAGAAGGTGTCATTCC+AGG + chr3_3:91484773-91484792 Msa0483330:CDS 45.0%
CTACTTGAGCTCACTGTACA+AGG + chr3_3:91484797-91484816 Msa0483330:CDS 45.0%
!! TCGGGTTGGATTTCAGATCT+TGG - chr3_3:91484884-91484903 None:intergenic 45.0%
!! TATTCTCAAGAGTGTCGGGT+TGG - chr3_3:91484898-91484917 None:intergenic 45.0%
ATTGACGGGGATGATCAATC+TGG + chr3_3:91484941-91484960 Msa0483330:CDS 45.0%
TGAGATGGTTCAAGTCAGCA+TGG + chr3_3:91484985-91485004 Msa0483330:CDS 45.0%
TCAGCATGGAACAAAGTCTG+AGG + chr3_3:91484999-91485018 Msa0483330:CDS 45.0%
! GTCTGAGGCATTTACAGCAA+AGG + chr3_3:91485014-91485033 Msa0483330:CDS 45.0%
AGCTATAGGGAGATCACTTG+GGG - chr3_3:91485053-91485072 None:intergenic 45.0%
CAGCTATAGGGAGATCACTT+GGG - chr3_3:91485054-91485073 None:intergenic 45.0%
GTCACTAGATACCTCCACAA+TGG - chr3_3:91485237-91485256 None:intergenic 45.0%
!! TTGTGGAGGTATCTAGTGAC+TGG + chr3_3:91485237-91485256 Msa0483330:three_prime_UTR 45.0%
!!! TTTATTTTGTTTTTTATTAT+TGG + chr3_3:91482261-91482280 Msa0483330:intron 5.0%
ATATGGGGGAGAGAGAGAGA+AGG - chr3_3:91481143-91481162 None:intergenic 50.0%
GAGATTTGAAGGTAGGGTGG+AGG - chr3_3:91481237-91481256 None:intergenic 50.0%
!! GAGGAGTGTCCATTGTGAAG+AGG - chr3_3:91481275-91481294 None:intergenic 50.0%
GAACAGGAGGAAGGTGAATG+AGG - chr3_3:91481294-91481313 None:intergenic 50.0%
! CGTCAGTTGTCTGAAGCTGT+CGG + chr3_3:91481504-91481523 Msa0483330:CDS 50.0%
TTCTATGCTCCGAGTCGACT+CGG + chr3_3:91481536-91481555 Msa0483330:CDS 50.0%
CTCGGTTGAGTCTCATGAAC+CGG + chr3_3:91481554-91481573 Msa0483330:CDS 50.0%
CATGTGATGCCTTGAAGCCA+TGG + chr3_3:91481807-91481826 Msa0483330:intron 50.0%
ATGCCTTGAAGCCATGGTGT+TGG + chr3_3:91481813-91481832 Msa0483330:intron 50.0%
TCTCCAACACCATGGCTTCA+AGG - chr3_3:91481819-91481838 None:intergenic 50.0%
! GAAAGTGAGAGTACGGAGTG+TGG + chr3_3:91483133-91483152 Msa0483330:intron 50.0%
!! CACCCATGGTTTCTAGCTAG+AGG + chr3_3:91483177-91483196 Msa0483330:intron 50.0%
CACCCTCTAGCTAGAAACCA+TGG - chr3_3:91483183-91483202 None:intergenic 50.0%
!! CATGGTTTCTAGCTAGAGGG+TGG + chr3_3:91483181-91483200 Msa0483330:intron 50.0%
TTCCACCTTTCTTCGGTCCT+AGG + chr3_3:91483479-91483498 Msa0483330:intron 50.0%
TCCACCTTTCTTCGGTCCTA+GGG + chr3_3:91483480-91483499 Msa0483330:intron 50.0%
TGCTTACATGTAGGGACGGA+GGG - chr3_3:91483609-91483628 None:intergenic 50.0%
! AGGGTGCTTACATGTAGGGA+CGG - chr3_3:91483613-91483632 None:intergenic 50.0%
GTGCTTACATATAGGGACGG+AGG + chr3_3:91483650-91483669 Msa0483330:intron 50.0%
! ATAGGGACGGAGGGAGTATA+TGG + chr3_3:91483660-91483679 Msa0483330:intron 50.0%
GGTTATCAGGAAGGAAGCCT+TGG - chr3_3:91483888-91483907 None:intergenic 50.0%
GCTTCCTTCCTGATAACCGA+AGG + chr3_3:91483890-91483909 Msa0483330:intron 50.0%
!! GGCCTTATTGGGTACCTTCT+AGG + chr3_3:91483976-91483995 Msa0483330:intron 50.0%
AGGTGGTATTCTTGCAGTCG+TGG + chr3_3:91484652-91484671 Msa0483330:CDS 50.0%
TGGTATTCTTGCAGTCGTGG+AGG + chr3_3:91484655-91484674 Msa0483330:CDS 50.0%
ACAGTGAGCTCAAGTAGTCC+TGG - chr3_3:91484794-91484813 None:intergenic 50.0%
!! CGCGCTTTTGTCTGAGACTT+CGG - chr3_3:91484827-91484846 None:intergenic 50.0%
CCAGCTATAGGGAGATCACT+TGG - chr3_3:91485055-91485074 None:intergenic 50.0%
CCAAGTGATCTCCCTATAGC+TGG + chr3_3:91485052-91485071 Msa0483330:CDS 50.0%
! CAGAAGCACAGCCAGCTATA+GGG - chr3_3:91485066-91485085 None:intergenic 50.0%
! TCAGAAGCACAGCCAGCTAT+AGG - chr3_3:91485067-91485086 None:intergenic 50.0%
TAGATACCTCCACAATGGCC+TGG - chr3_3:91485232-91485251 None:intergenic 50.0%
ATTGGAGGAGGAGGAGGAAC+AGG - chr3_3:91481310-91481329 None:intergenic 55.0%
! AAGCTGAAGAGCACGACGGA+CGG - chr3_3:91481403-91481422 None:intergenic 55.0%
GCTTCTTAAATCCGGCGTGC+CGG + chr3_3:91481419-91481438 Msa0483330:CDS 55.0%
GAGACTCAACCGAGTCGACT+CGG - chr3_3:91481548-91481567 None:intergenic 55.0%
! TGGGTTGGGGTGTAGAGAGT+TGG + chr3_3:91482342-91482361 Msa0483330:intron 55.0%
CCACCTTTCTTCGGTCCTAG+GGG + chr3_3:91483481-91483500 Msa0483330:intron 55.0%
ACTCCCCTAGGACCGAAGAA+AGG - chr3_3:91483487-91483506 None:intergenic 55.0%
GTGCTTACATGTAGGGACGG+AGG - chr3_3:91483610-91483629 None:intergenic 55.0%
CCACCCTTCGGTTATCAGGA+AGG - chr3_3:91483897-91483916 None:intergenic 55.0%
CCTTCCTGATAACCGAAGGG+TGG + chr3_3:91483894-91483913 Msa0483330:intron 55.0%
GTCTCCACCCTTCGGTTATC+AGG - chr3_3:91483901-91483920 None:intergenic 55.0%
TCTTAGAGACGGAAGCCCAC+AGG + chr3_3:91484424-91484443 Msa0483330:CDS 55.0%
CTGCATCAGCTTTCGCCTGT+GGG - chr3_3:91484442-91484461 None:intergenic 55.0%
ACTGCATCAGCTTTCGCCTG+TGG - chr3_3:91484443-91484462 None:intergenic 55.0%
GGCGAAAGCTGATGCAGTGA+TGG + chr3_3:91484445-91484464 Msa0483330:CDS 55.0%
CAGAACTGCCTTGACATCCG+AGG + chr3_3:91484628-91484647 Msa0483330:CDS 55.0%
ACTGCCTTGACATCCGAGGA+AGG + chr3_3:91484632-91484651 Msa0483330:CDS 55.0%
ACCACCTTCCTCGGATGTCA+AGG - chr3_3:91484639-91484658 None:intergenic 55.0%
TATGCCAGTCCAGGCCATTG+TGG + chr3_3:91485220-91485239 Msa0483330:three_prime_UTR 55.0%
GAGGAGGAGGAACAGGAGGA+AGG - chr3_3:91481303-91481322 None:intergenic 60.0%
AGAGCACGACGGACGGCTAA+CGG - chr3_3:91481396-91481415 None:intergenic 60.0%
CCCCTAGGACCGAAGAAAGG+TGG - chr3_3:91483484-91483503 None:intergenic 60.0%
GCCTTGACATCCGAGGAAGG+TGG + chr3_3:91484635-91484654 Msa0483330:CDS 60.0%
ACCTCCACAATGGCCTGGAC+TGG - chr3_3:91485227-91485246 None:intergenic 60.0%
GGAGGAGGAGGAGGAACAGG+AGG - chr3_3:91481307-91481326 None:intergenic 65.0%
AGCACGACGGACGGCTAACG+GGG - chr3_3:91481394-91481413 None:intergenic 65.0%
GAGCACGACGGACGGCTAAC+GGG - chr3_3:91481395-91481414 None:intergenic 65.0%
AATCCGGCGTGCCGGAGTTG+CGG + chr3_3:91481427-91481446 Msa0483330:CDS 65.0%
GCGGCTTGAAGCCGCAACTC+CGG - chr3_3:91481441-91481460 None:intergenic 65.0%
GCCAGTCCAGGCCATTGTGG+AGG + chr3_3:91485223-91485242 Msa0483330:three_prime_UTR 65.0%
CGGACGGCTAACGGGGTCTG+CGG - chr3_3:91481387-91481406 None:intergenic 70.0%
AAGCCGCAACTCCGGCACGC+CGG - chr3_3:91481433-91481452 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 91481098 91485372 91481098 ID=Msa0483330;Name=Msa0483330
chr3_3 mRNA 91481098 91485372 91481098 ID=Msa0483330-mRNA-1;Parent=Msa0483330;Name=Msa0483330-mRNA-1;_AED=0.00;_eAED=0.00;_QI=184|1|1|1|1|1|2|270|395
chr3_3 exon 91481098 91481616 91481098 ID=Msa0483330-mRNA-1:exon:26678;Parent=Msa0483330-mRNA-1
chr3_3 exon 91484250 91485372 91484250 ID=Msa0483330-mRNA-1:exon:26679;Parent=Msa0483330-mRNA-1
chr3_3 five_prime_UTR 91481098 91481281 91481098 ID=Msa0483330-mRNA-1:five_prime_utr;Parent=Msa0483330-mRNA-1
chr3_3 CDS 91481282 91481616 91481282 ID=Msa0483330-mRNA-1:cds;Parent=Msa0483330-mRNA-1
chr3_3 CDS 91484250 91485102 91484250 ID=Msa0483330-mRNA-1:cds;Parent=Msa0483330-mRNA-1
chr3_3 three_prime_UTR 91485103 91485372 91485103 ID=Msa0483330-mRNA-1:three_prime_utr;Parent=Msa0483330-mRNA-1
Gene Sequence

>Msa0483330

ATGGACACTCCTCATTCACCTTCCTCCTGTTCCTCCTCCTCCTCCAATTATTCATGGGAAGGAGGGCATCCTACCGACACAATTATTATAGAAGCTGAAGAGCCGCAGACCCCGTTAGCCGTCCGTCGTGCTCTTCAGCTTCTTAAATCCGGCGTGCCGGAGTTGCGGCTTCAAGCCGCACGTGATATTAGGAAACTTACGAAAACATCACAGAGGTGTCGGCGTCAGTTGTCTGAAGCTGTCGGTACGCTTGTTTCTATGCTCCGAGTCGACTCGGTTGAGTCTCATGAACCGGCTCTTCTTGCTTTGCTTAATCTCGCCGTCAAAGATGAAAAGAATAAAATCAATATTGTGGAGGCTGGAGCATTAGAACCAATACTTAGTTTCCTCAAGTCAGAAAATCTAAATCTACAGGCATCTGCAGCTGCAGCTTTGCTCACACTATCTGCCTCTTCAATCAACAAACCAATTATTAGTGGTTGTGGCGCCATTCCCCTTCTTGTCGAGATTCTTAGAGACGGAAGCCCACAGGCGAAAGCTGATGCAGTGATGGCTCTCTCTAATTTATCAACATACCCTAATAATCTTAGCATTATTCTCGAAACAAATCCAATCCCTCACATAGTTGATATCCTCAAAACATGCAAAAAGTCCTCGAAAACAGCTGAAAAATGTTGTGCTTTGATAGAACCCTTGGTGGACTATGATGAATGCAGAACTGCCTTGACATCCGAGGAAGGTGGTATTCTTGCAGTCGTGGAGGTTCTTGAAAACGGCACTCTCCAAAGTAGGGAACATGCTGTTGGAACACTATTGACAATGTGCCAAAGTGATCGATGTAAATACAGGGAACCGATTCTTAGAGAAGGTGTCATTCCAGGACTACTTGAGCTCACTGTACAAGGAACACCGAAGTCTCAGACAAAAGCGCGCACCCTTTTGCAACTACTAAGAGAATCTCCTTATCCAAGATCTGAAATCCAACCCGACACTCTTGAGAATATAGTATGCAACATCATATCTCAAATTGACGGGGATGATCAATCTGGTAAAGCAAAGAAAATGCTAGCTGAGATGGTTCAAGTCAGCATGGAACAAAGTCTGAGGCATTTACAGCAAAGGGCACTTGTATGCACCCCAAGTGATCTCCCTATAGCTGGCTGTGCTTCTGAAGTTTCTTTTAAGTAA
Protein sequence

>Msa0483330

MDTPHSPSSCSSSSSNYSWEGGHPTDTIIIEAEEPQTPLAVRRALQLLKSGVPELRLQAARDIRKLTKTSQRCRRQLSEAVGTLVSMLRVDSVESHEPALLALLNLAVKDEKNKINIVEAGALEPILSFLKSENLNLQASAAAALLTLSASSINKPIISGCGAIPLLVEILRDGSPQAKADAVMALSNLSTYPNNLSIILETNPIPHIVDILKTCKKSSKTAEKCCALIEPLVDYDECRTALTSEEGGILAVVEVLENGTLQSREHAVGTLLTMCQSDRCKYREPILREGVIPGLLELTVQGTPKSQTKARTLLQLLRESPYPRSEIQPDTLENIVCNIISQIDGDDQSGKAKKMLAEMVQVSMEQSLRHLQQRALVCTPSDLPIAGCASEVSFK*