Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0368480 | XP_024635084.1 | 89.474 | 304 | 1 | 1 | 1 | 304 | 1 | 273 | 0.0 | 547 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0368480 | sp|Q9M2S6|SDIR1_ARATH | 69.707 | 307 | 56 | 5 | 1 | 304 | 1 | 273 | 1.69e-137 | 392 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0368480 | A0A7J0E893 | 74.138 | 290 | 55 | 1 | 1 | 290 | 1 | 270 | 8.61e-155 | 444 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0368480 | Msa1085060 | 0.966595 | 3.932143e-126 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0368480 | MtrunA17_Chr3g0112041 | 89.474 | 304 | 1 | 1 | 1 | 304 | 1 | 273 | 0.0 | 547 |
| Msa0368480 | MtrunA17_Chr4g0031921 | 51.961 | 306 | 110 | 3 | 1 | 304 | 1 | 271 | 9.85e-100 | 294 |
| Msa0368480 | MtrunA17_Chr4g0031911 | 51.307 | 306 | 112 | 3 | 1 | 304 | 1 | 271 | 1.59e-99 | 293 |
| Msa0368480 | MtrunA17_Chr6g0461611 | 45.283 | 53 | 29 | 0 | 235 | 287 | 227 | 279 | 7.22e-14 | 70.9 |
| Msa0368480 | MtrunA17_Chr1g0169651 | 61.905 | 42 | 16 | 0 | 244 | 285 | 683 | 724 | 7.90e-14 | 72.0 |
| Msa0368480 | MtrunA17_Chr5g0417501 | 51.163 | 43 | 21 | 0 | 244 | 286 | 115 | 157 | 2.47e-12 | 65.5 |
| Msa0368480 | MtrunA17_Chr5g0406031 | 49.057 | 53 | 26 | 1 | 234 | 285 | 179 | 231 | 2.59e-12 | 65.5 |
| Msa0368480 | MtrunA17_Chr8g0371291 | 50.000 | 52 | 25 | 1 | 235 | 285 | 171 | 222 | 4.58e-12 | 64.7 |
| Msa0368480 | MtrunA17_Chr2g0305161 | 50.000 | 50 | 24 | 1 | 236 | 285 | 135 | 183 | 1.15e-11 | 62.8 |
| Msa0368480 | MtrunA17_Chr1g0200721 | 52.830 | 53 | 24 | 1 | 243 | 294 | 234 | 286 | 1.42e-11 | 64.7 |
| Msa0368480 | MtrunA17_Chr7g0275601 | 51.020 | 49 | 23 | 1 | 238 | 285 | 102 | 150 | 2.46e-11 | 61.2 |
| Msa0368480 | MtrunA17_Chr8g0388231 | 52.941 | 51 | 21 | 2 | 236 | 285 | 331 | 379 | 4.18e-11 | 63.2 |
| Msa0368480 | MtrunA17_Chr6g0451051 | 45.455 | 55 | 29 | 1 | 242 | 295 | 64 | 118 | 5.85e-11 | 60.1 |
| Msa0368480 | MtrunA17_Chr6g0451041 | 47.917 | 48 | 24 | 1 | 244 | 290 | 18 | 65 | 6.68e-11 | 58.2 |
| Msa0368480 | MtrunA17_Chr5g0409201 | 40.278 | 72 | 42 | 1 | 233 | 303 | 82 | 153 | 7.54e-11 | 59.7 |
| Msa0368480 | MtrunA17_Chr2g0325141 | 33.721 | 86 | 51 | 2 | 213 | 297 | 65 | 145 | 8.01e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0368480 | AT3G55530.1 | 69.707 | 307 | 56 | 5 | 1 | 304 | 1 | 273 | 1.72e-138 | 392 |
| Msa0368480 | AT1G04790.1 | 60.465 | 43 | 17 | 0 | 243 | 285 | 588 | 630 | 1.96e-14 | 73.9 |
| Msa0368480 | AT1G49850.1 | 41.379 | 87 | 38 | 2 | 212 | 285 | 158 | 244 | 2.70e-13 | 68.9 |
| Msa0368480 | AT1G71980.1 | 60.000 | 45 | 17 | 1 | 242 | 285 | 230 | 274 | 3.62e-12 | 67.0 |
| Msa0368480 | AT2G17730.1 | 38.028 | 71 | 43 | 1 | 216 | 285 | 168 | 238 | 3.69e-12 | 65.5 |
| Msa0368480 | AT5G66070.5 | 43.077 | 65 | 33 | 2 | 225 | 285 | 154 | 218 | 3.87e-12 | 65.1 |
| Msa0368480 | AT5G66070.1 | 43.077 | 65 | 33 | 2 | 225 | 285 | 154 | 218 | 3.87e-12 | 65.1 |
| Msa0368480 | AT3G58720.1 | 35.714 | 84 | 48 | 1 | 227 | 304 | 127 | 210 | 5.28e-12 | 65.1 |
| Msa0368480 | AT5G66070.2 | 43.077 | 65 | 33 | 2 | 225 | 285 | 178 | 242 | 5.32e-12 | 65.1 |
| Msa0368480 | AT3G58720.4 | 35.714 | 84 | 48 | 1 | 227 | 304 | 147 | 230 | 6.21e-12 | 65.1 |
| Msa0368480 | AT3G58720.2 | 41.667 | 60 | 35 | 0 | 227 | 286 | 155 | 214 | 1.30e-11 | 64.3 |
| Msa0368480 | AT5G24870.3 | 46.154 | 52 | 28 | 0 | 239 | 290 | 463 | 514 | 2.06e-11 | 64.7 |
| Msa0368480 | AT5G24870.1 | 46.154 | 52 | 28 | 0 | 239 | 290 | 463 | 514 | 2.06e-11 | 64.7 |
| Msa0368480 | AT5G24870.2 | 46.154 | 52 | 28 | 0 | 239 | 290 | 463 | 514 | 2.06e-11 | 64.7 |
| Msa0368480 | AT5G10650.1 | 46.000 | 50 | 27 | 0 | 239 | 288 | 470 | 519 | 2.08e-11 | 64.7 |
| Msa0368480 | AT5G10650.2 | 46.000 | 50 | 27 | 0 | 239 | 288 | 470 | 519 | 2.08e-11 | 64.7 |
| Msa0368480 | AT5G08139.1 | 45.652 | 46 | 25 | 0 | 242 | 287 | 307 | 352 | 2.19e-11 | 64.3 |
| Msa0368480 | AT5G60820.1 | 46.154 | 52 | 28 | 0 | 236 | 287 | 364 | 415 | 2.28e-11 | 64.3 |
| Msa0368480 | AT1G35625.1 | 50.000 | 54 | 25 | 2 | 242 | 294 | 231 | 283 | 2.33e-11 | 63.9 |
| Msa0368480 | AT1G74410.1 | 32.895 | 76 | 34 | 2 | 211 | 285 | 159 | 218 | 2.54e-11 | 62.8 |
| Msa0368480 | AT3G13430.4 | 36.000 | 75 | 48 | 0 | 225 | 299 | 206 | 280 | 2.63e-11 | 63.9 |
| Msa0368480 | AT3G13430.3 | 36.000 | 75 | 48 | 0 | 225 | 299 | 206 | 280 | 2.63e-11 | 63.9 |
| Msa0368480 | AT3G13430.1 | 36.000 | 75 | 48 | 0 | 225 | 299 | 206 | 280 | 2.63e-11 | 63.9 |
| Msa0368480 | AT3G13430.2 | 36.000 | 75 | 48 | 0 | 225 | 299 | 206 | 280 | 2.63e-11 | 63.9 |
| Msa0368480 | AT4G35840.1 | 38.028 | 71 | 43 | 1 | 216 | 285 | 163 | 233 | 2.88e-11 | 62.8 |
| Msa0368480 | AT3G58720.3 | 41.667 | 60 | 35 | 0 | 227 | 286 | 155 | 214 | 3.09e-11 | 63.5 |
| Msa0368480 | AT5G42940.2 | 37.143 | 70 | 38 | 1 | 216 | 285 | 615 | 678 | 3.31e-11 | 64.3 |
| Msa0368480 | AT5G42940.1 | 37.143 | 70 | 38 | 1 | 216 | 285 | 615 | 678 | 3.31e-11 | 64.3 |
| Msa0368480 | AT1G14200.1 | 40.909 | 44 | 26 | 0 | 243 | 286 | 108 | 151 | 6.19e-11 | 60.8 |
| Msa0368480 | AT3G51325.1 | 44.898 | 49 | 25 | 1 | 240 | 286 | 22 | 70 | 6.69e-11 | 58.5 |
| Msa0368480 | AT5G66160.1 | 59.091 | 44 | 17 | 1 | 243 | 285 | 231 | 274 | 7.47e-11 | 62.4 |
| Msa0368480 | AT5G66160.2 | 59.091 | 44 | 17 | 1 | 243 | 285 | 231 | 274 | 7.68e-11 | 62.4 |
Find 103 sgRNAs with CRISPR-Local
Find 320 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAAGAGCTGATATAGAAAA+TGG | 0.205583 | 3_1:+65182261 | Msa0368480:CDS |
| GCAGCAGCCAGTGGCCTTCT+TGG | 0.225465 | 3_1:+65182819 | Msa0368480:CDS |
| GGCTGCTGCTGCATGAGCTT+GGG | 0.225768 | 3_1:-65182805 | None:intergenic |
| GAAGACCTTACCAGAAAATT+TGG | 0.231832 | 3_1:-65182610 | None:intergenic |
| TGGCTGCTGCTGCATGAGCT+TGG | 0.233454 | 3_1:-65182806 | None:intergenic |
| GTCCACAAATACAAGGTTTC+TGG | 0.243519 | 3_1:+65183202 | Msa0368480:CDS |
| TGCAAATTTCGAGCAGGATC+TGG | 0.318026 | 3_1:+65186284 | Msa0368480:CDS |
| TGTTCATTGTATTAAGTCTT+GGG | 0.325632 | 3_1:+65185081 | Msa0368480:CDS |
| GATATAGAAAATGGGTTTCC+AGG | 0.336999 | 3_1:+65182270 | Msa0368480:CDS |
| ATCTGATCGGAAACGGAGTT+TGG | 0.342721 | 3_1:-65181122 | None:intergenic |
| ATCTGATCTTCTTCGCTCTC+TGG | 0.349493 | 3_1:-65181081 | None:intergenic |
| ATCTCTTCCTCAGTCATAGA+AGG | 0.363639 | 3_1:-65183166 | None:intergenic |
| AGTCCCTTGTTGCCGCAGCC+AGG | 0.363766 | 3_1:-65186252 | None:intergenic |
| TTATGAAACTTTAAGAGCTC+TGG | 0.370204 | 3_1:+65183120 | Msa0368480:CDS |
| TATTTGATATTTCAGAATAT+CGG | 0.383826 | 3_1:+65182148 | Msa0368480:intron |
| TGCAAGCCGAGGGCGTCTGC+AGG | 0.384276 | 3_1:+65182884 | Msa0368480:CDS |
| AACTTGAATTAAAACTTCAT+AGG | 0.392308 | 3_1:-65182210 | None:intergenic |
| TTAAGTTTGTACTTGCTGTT+TGG | 0.399298 | 3_1:-65186567 | None:intergenic |
| CCAGAAAATTTGGTGACATC+TGG | 0.401145 | 3_1:-65182600 | None:intergenic |
| TGACAAACTTGGTAATCTAT+AGG | 0.405290 | 3_1:-65186529 | None:intergenic |
| TTTGTTACTTAACTCCCATA+TGG | 0.407086 | 3_1:-65185126 | None:intergenic |
| TATAGATTACCAAGTTTGTC+AGG | 0.415476 | 3_1:+65186531 | Msa0368480:three_prime_UTR |
| ATTCTGTTTGCAGCTCTGGC+TGG | 0.419069 | 3_1:+65182713 | Msa0368480:intron |
| TAGCTTGCCCTGCCTGCATC+AGG | 0.419997 | 3_1:+65185365 | Msa0368480:CDS |
| AGTTCAGTATCATGAATAAC+AGG | 0.423414 | 3_1:-65182573 | None:intergenic |
| GACCACTTGATGTTCCCATA+TGG | 0.429257 | 3_1:+65185111 | Msa0368480:CDS |
| ATGTTCATTGTATTAAGTCT+TGG | 0.432436 | 3_1:+65185080 | Msa0368480:CDS |
| CGCCTCTCAGGTATAAATCC+TGG | 0.433691 | 3_1:-65182288 | None:intergenic |
| TTGCAGCTCTGGCTGGTGCT+TGG | 0.435630 | 3_1:+65182720 | Msa0368480:intron |
| TACCCTGACGTAGGGATTTG+AGG | 0.436821 | 3_1:+65186460 | Msa0368480:three_prime_UTR |
| ACCACTTGATGTTCCCATAT+GGG | 0.439149 | 3_1:+65185112 | Msa0368480:CDS |
| TTGTTACTTAACTCCCATAT+GGG | 0.441119 | 3_1:-65185125 | None:intergenic |
| AACTTTAAGAGCTCTGGATT+CGG | 0.443410 | 3_1:+65183126 | Msa0368480:CDS |
| TTCAGCTGGCACTTCTTGAT+CGG | 0.445031 | 3_1:+65182916 | Msa0368480:CDS |
| CATACCAATGCACGCCTCTC+AGG | 0.446355 | 3_1:-65182300 | None:intergenic |
| ATTCGATTCGATTCGATTCG+AGG | 0.450301 | 3_1:-65181058 | None:intergenic |
| ATTCCTCAAATCCCTACGTC+AGG | 0.450367 | 3_1:-65186463 | None:intergenic |
| TCAGCTGGCACTTCTTGATC+GGG | 0.463787 | 3_1:+65182917 | Msa0368480:CDS |
| ACGCTAGTTGCATTGATCCC+TGG | 0.464059 | 3_1:+65186234 | Msa0368480:CDS |
| GACCAGAAACCTTGTATTTG+TGG | 0.466017 | 3_1:-65183204 | None:intergenic |
| GCAAATTTCGAGCAGGATCT+GGG | 0.475848 | 3_1:+65186285 | Msa0368480:CDS |
| GATCGGGAGTTTGATGATCT+AGG | 0.485183 | 3_1:+65182933 | Msa0368480:CDS |
| GCAGGGTCTCAGACTTCAGC+TGG | 0.489685 | 3_1:+65182902 | Msa0368480:CDS |
| ACATAGCGACCTGACAAACT+TGG | 0.498142 | 3_1:-65186540 | None:intergenic |
| GTCCCTTGTTGCCGCAGCCA+GGG | 0.498993 | 3_1:-65186251 | None:intergenic |
| CAAGAGCTGATATAGAAAAT+GGG | 0.500384 | 3_1:+65182262 | Msa0368480:CDS |
| GGTAAAAGTAAAGCAAACTT+AGG | 0.504877 | 3_1:-65186635 | None:intergenic |
| AGGTTGAAGATCACGAGAAT+CGG | 0.508685 | 3_1:-65181038 | None:intergenic |
| GCTCACTTGCAGTGTATGCT+TGG | 0.508802 | 3_1:+65185314 | Msa0368480:CDS |
| CTTGTAATTACCCTGACGTA+GGG | 0.510822 | 3_1:+65186452 | Msa0368480:three_prime_UTR |
| GAAACAGACCTGATGCAGGC+AGG | 0.511840 | 3_1:-65185373 | None:intergenic |
| TCTTGATGGCTACAATGCTA+AGG | 0.511885 | 3_1:+65182748 | Msa0368480:CDS |
| AAGCTGAATCTGATCGGAAA+CGG | 0.513031 | 3_1:-65181129 | None:intergenic |
| GAAACCTTGTATTTGTGGAC+AGG | 0.524408 | 3_1:-65183199 | None:intergenic |
| CAGGATAATTCAAATGCGGT+TGG | 0.526813 | 3_1:+65185267 | Msa0368480:CDS |
| ATCCCTGGCTGCGGCAACAA+GGG | 0.527296 | 3_1:+65186249 | Msa0368480:CDS |
| CCTGCTCGAAATTTGCAGAC+AGG | 0.527651 | 3_1:-65186278 | None:intergenic |
| GCTCATGCAGCAGCAGCCAG+TGG | 0.529345 | 3_1:+65182810 | Msa0368480:CDS |
| TGAGACCCTGCAGACGCCCT+CGG | 0.529448 | 3_1:-65182890 | None:intergenic |
| TGTGTGGCCAAGAAGGCCAC+TGG | 0.533669 | 3_1:-65182826 | None:intergenic |
| ACATAATGATATTGCGGACA+TGG | 0.537633 | 3_1:+65186322 | Msa0368480:CDS |
| GTTCATTGTATTAAGTCTTG+GGG | 0.540363 | 3_1:+65185082 | Msa0368480:CDS |
| TCGTTTGTGGCAGAAGACAC+AGG | 0.541361 | 3_1:+65185248 | Msa0368480:intron |
| ATCATTTATATAGATTATTG+TGG | 0.542091 | 3_1:+65185055 | Msa0368480:intron |
| TATACCTGAGAGGCGTGCAT+TGG | 0.542114 | 3_1:+65182296 | Msa0368480:CDS |
| CCTGTCTGCAAATTTCGAGC+AGG | 0.542234 | 3_1:+65186278 | Msa0368480:CDS |
| AACGCCTTCCACTTCGGCTG+AGG | 0.544809 | 3_1:+65184728 | Msa0368480:CDS |
| GTGAGTGAGTTGGAATTACT+AGG | 0.546777 | 3_1:-65182426 | None:intergenic |
| GATCCCTGGCTGCGGCAACA+AGG | 0.548660 | 3_1:+65186248 | Msa0368480:CDS |
| TCTTCCTGTCCACAAATACA+AGG | 0.550485 | 3_1:+65183195 | Msa0368480:CDS |
| CAATGAAACAGACCTGATGC+AGG | 0.560277 | 3_1:-65185377 | None:intergenic |
| AAACAGACCTGATGCAGGCA+GGG | 0.562428 | 3_1:-65185372 | None:intergenic |
| GCAAGCCGAGGGCGTCTGCA+GGG | 0.564406 | 3_1:+65182885 | Msa0368480:CDS |
| TACTGCACCTTCTATGACTG+AGG | 0.566852 | 3_1:+65183159 | Msa0368480:CDS |
| TGCTTGGAGCAAGTTAATGT+TGG | 0.567132 | 3_1:+65185330 | Msa0368480:CDS |
| CGATAGCACTTGCAAGCCGA+GGG | 0.567822 | 3_1:+65182874 | Msa0368480:CDS |
| TACGAGAAAAGTGAGTGAGT+TGG | 0.568555 | 3_1:-65182436 | None:intergenic |
| CTGCTCGAAATTTGCAGACA+GGG | 0.568726 | 3_1:-65186277 | None:intergenic |
| TCGATAGCACTTGCAAGCCG+AGG | 0.569823 | 3_1:+65182873 | Msa0368480:CDS |
| AGATGATACCTCAGCCGAAG+TGG | 0.573491 | 3_1:-65184736 | None:intergenic |
| CGGCTTGCAAGTGCTATCGA+TGG | 0.576690 | 3_1:-65182870 | None:intergenic |
| GAACAAAAGCTGAATCTGAT+CGG | 0.586775 | 3_1:-65181135 | None:intergenic |
| TCCCATATGGGAACATCAAG+TGG | 0.587840 | 3_1:-65185113 | None:intergenic |
| AGGCGTTGCTTGTTGCATTG+AGG | 0.592771 | 3_1:-65184712 | None:intergenic |
| TATAAATGTACAACAGTACA+AGG | 0.596806 | 3_1:-65186598 | None:intergenic |
| CTTGCAAGTGCTATCGATGG+AGG | 0.598024 | 3_1:-65182867 | None:intergenic |
| GTTGCATTGATCCCTGGCTG+CGG | 0.599433 | 3_1:+65186240 | Msa0368480:CDS |
| TCTTGTAATTACCCTGACGT+AGG | 0.609259 | 3_1:+65186451 | Msa0368480:three_prime_UTR |
| GATACCTCAGCCGAAGTGGA+AGG | 0.612027 | 3_1:-65184732 | None:intergenic |
| GCAAGTGAGCTCATCATCAG+AGG | 0.615069 | 3_1:-65185301 | None:intergenic |
| TGATATTTCAGAATATCGGA+AGG | 0.617574 | 3_1:+65182152 | Msa0368480:intron |
| TTCCAGGATTTATACCTGAG+AGG | 0.618398 | 3_1:+65182286 | Msa0368480:CDS |
| GTAGTTCTGTGTGGCCAAGA+AGG | 0.622680 | 3_1:-65182833 | None:intergenic |
| CAGTGGACATAATGATATTG+CGG | 0.629961 | 3_1:+65186316 | Msa0368480:CDS |
| TTCCTCAAATCCCTACGTCA+GGG | 0.630184 | 3_1:-65186462 | None:intergenic |
| ACAAGCAACGCCTTCCACTT+CGG | 0.635583 | 3_1:+65184722 | Msa0368480:CDS |
| TAACATCTATAGTTGTTAGA+CGG | 0.639054 | 3_1:-65186494 | None:intergenic |
| TCTTGGTTCGGTAAAATGCA+TGG | 0.662796 | 3_1:-65180964 | None:intergenic |
| GGATCTGGGTGGAATGACAG+TGG | 0.668864 | 3_1:+65186299 | Msa0368480:CDS |
| GACACAGGATAATTCAAATG+CGG | 0.672978 | 3_1:+65185263 | Msa0368480:CDS |
| AATTTCGAGCAGGATCTGGG+TGG | 0.705429 | 3_1:+65186288 | Msa0368480:CDS |
| TATGCAATCGTAGTTCTGTG+TGG | 0.730334 | 3_1:-65182842 | None:intergenic |
| GAGACTTACGGAAATTGACG+AGG | 0.732054 | 3_1:-65181157 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAGCTTTATATATATATTT+TGG | + | chr3_1:65183635-65183654 | Msa0368480:intron | 10.0% |
| !! | TTACTATATTTACAAATTTA+TGG | + | chr3_1:65184433-65184452 | Msa0368480:intron | 10.0% |
| !! | TTACTATATTTACAAATTTA+TGG | + | chr3_1:65184433-65184452 | Msa0368480:intron | 10.0% |
| !!! | CAGTAATATAATTTTTTTTA+GGG | - | chr3_1:65184655-65184674 | None:intergenic | 10.0% |
| !!! | TCAGTAATATAATTTTTTTT+AGG | - | chr3_1:65184656-65184675 | None:intergenic | 10.0% |
| !! | GTATACTCTATATAATTATT+TGG | + | chr3_1:65182012-65182031 | Msa0368480:intron | 15.0% |
| !! | TATTTGATATTTCAGAATAT+CGG | + | chr3_1:65182148-65182167 | Msa0368480:intron | 15.0% |
| !!! | TATATTTTGGATAATTAACT+CGG | + | chr3_1:65183648-65183667 | Msa0368480:intron | 15.0% |
| !! | TGCTAATAATAAAAGATAAT+GGG | - | chr3_1:65184272-65184291 | None:intergenic | 15.0% |
| !! | ATGCTAATAATAAAAGATAA+TGG | - | chr3_1:65184271-65184290 | None:intergenic | 15.0% |
| !! | ACACACATATATATATATAT+GGG | + | chr3_1:65184196-65184215 | Msa0368480:intron | 15.0% |
| !! | ATGCTAATAATAAAAGATAA+TGG | + | chr3_1:65184271-65184290 | Msa0368480:intron | 15.0% |
| !! | TGCTAATAATAAAAGATAAT+GGG | + | chr3_1:65184272-65184291 | Msa0368480:intron | 15.0% |
| !!! | ATGCATGATATATTTTTTTA+TGG | + | chr3_1:65184325-65184344 | Msa0368480:intron | 15.0% |
| !!! | TGCATGATATATTTTTTTAT+GGG | + | chr3_1:65184326-65184345 | Msa0368480:intron | 15.0% |
| !!! | ATGCATGATATATTTTTTTA+TGG | + | chr3_1:65184325-65184344 | Msa0368480:intron | 15.0% |
| !!! | TGCATGATATATTTTTTTAT+GGG | + | chr3_1:65184326-65184345 | Msa0368480:intron | 15.0% |
| !! | ATCATTTATATAGATTATTG+TGG | + | chr3_1:65185055-65185074 | Msa0368480:intron | 15.0% |
| !!! | AACTACAAGTAAAATTTTAT+AGG | - | chr3_1:65185760-65185779 | None:intergenic | 15.0% |
| !! | ACAAGATAAAAACAAATAAA+CGG | - | chr3_1:65186208-65186227 | None:intergenic | 15.0% |
| !!! | GCGATTTTAAGATTTAATTA+GGG | + | chr3_1:65181312-65181331 | Msa0368480:intron | 20.0% |
| !! | AGTTTATTATGAATAATCTG+CGG | + | chr3_1:65181345-65181364 | Msa0368480:intron | 20.0% |
| !!! | TGTTTGATTATGTTAGTTTA+TGG | + | chr3_1:65181710-65181729 | Msa0368480:intron | 20.0% |
| !!! | TTCTGAAATATCAAATAAGA+TGG | - | chr3_1:65182145-65182164 | None:intergenic | 20.0% |
| !! | AACTTGAATTAAAACTTCAT+AGG | - | chr3_1:65182213-65182232 | None:intergenic | 20.0% |
| !! | ATCAGTACAAAATAATACAT+TGG | - | chr3_1:65182371-65182390 | None:intergenic | 20.0% |
| !!! | AAATGATACACATTTTATCA+AGG | + | chr3_1:65182644-65182663 | Msa0368480:intron | 20.0% |
| !! | AAGAAGAAAAAAACTGAATA+AGG | - | chr3_1:65183086-65183105 | None:intergenic | 20.0% |
| !! | AATGTCAAAATCCATTTAAA+GGG | - | chr3_1:65183270-65183289 | None:intergenic | 20.0% |
| !!! | TTTCAATTTGATTTATGACA+TGG | - | chr3_1:65183364-65183383 | None:intergenic | 20.0% |
| !! | AAATTGAAAATTCATATGTG+AGG | + | chr3_1:65183375-65183394 | Msa0368480:intron | 20.0% |
| !! | AATTGAAAATTCATATGTGA+GGG | + | chr3_1:65183376-65183395 | Msa0368480:intron | 20.0% |
| !! | CACACACATATATATATATA+TGG | + | chr3_1:65184195-65184214 | Msa0368480:intron | 20.0% |
| !! | TATATAGCATTAAAACTAGT+GGG | - | chr3_1:65184240-65184259 | None:intergenic | 20.0% |
| !! | ATATATAGCATTAAAACTAG+TGG | - | chr3_1:65184241-65184260 | None:intergenic | 20.0% |
| !!! | TAAATGGTTTTTTTGTATGA+TGG | + | chr3_1:65184947-65184966 | Msa0368480:intron | 20.0% |
| !! | CATTCAAGAAAATAATAGAA+TGG | - | chr3_1:65185028-65185047 | None:intergenic | 20.0% |
| !!! | TACAATCTTTTCATTTAGAT+TGG | + | chr3_1:65185196-65185215 | Msa0368480:intron | 20.0% |
| !!! | ATTTTACTTGTAGTTGAAAT+TGG | + | chr3_1:65185765-65185784 | Msa0368480:intron | 20.0% |
| !!! | TAAAATGCTTTTCAAAACAA+GGG | - | chr3_1:65185829-65185848 | None:intergenic | 20.0% |
| !!! | TTTTGAAAAGCATTTTACTT+TGG | + | chr3_1:65185832-65185851 | Msa0368480:intron | 20.0% |
| !! | AACAAAAAAAAATAGTGTTC+AGG | - | chr3_1:65185898-65185917 | None:intergenic | 20.0% |
| !!! | AATATCTACACAACTTTTTT+GGG | - | chr3_1:65186066-65186085 | None:intergenic | 20.0% |
| !!! | AAATATCTACACAACTTTTT+TGG | - | chr3_1:65186067-65186086 | None:intergenic | 20.0% |
| !!! | TCAATAATGTTGATTTAATG+TGG | - | chr3_1:65186094-65186113 | None:intergenic | 20.0% |
| !! | TCATAATTAAAAATTAGACG+AGG | - | chr3_1:65186356-65186375 | None:intergenic | 20.0% |
| ! | GATGAAATTGAAAATGGAAT+TGG | - | chr3_1:65181212-65181231 | None:intergenic | 25.0% |
| !!! | CGCGATTTTAAGATTTAATT+AGG | + | chr3_1:65181311-65181330 | Msa0368480:intron | 25.0% |
| !!! | ATTTTGAGGAAAATGGTTTA+AGG | + | chr3_1:65181477-65181496 | Msa0368480:intron | 25.0% |
| !!! | TAGTGTTTTTGTTTGATTAG+AGG | + | chr3_1:65181517-65181536 | Msa0368480:intron | 25.0% |
| ! | TATGATACTTGCATAATGAA+TGG | + | chr3_1:65181561-65181580 | Msa0368480:intron | 25.0% |
| ! | ATGATACTTGCATAATGAAT+GGG | + | chr3_1:65181562-65181581 | Msa0368480:intron | 25.0% |
| ! | TTTGTAAGGAAAATGGTTTA+AGG | + | chr3_1:65181667-65181686 | Msa0368480:intron | 25.0% |
| ! | TTAGGGATTAAAATTAGAGT+AGG | + | chr3_1:65181747-65181766 | Msa0368480:intron | 25.0% |
| !!! | AAAAATCTTCCCCTTATTTT+AGG | - | chr3_1:65181796-65181815 | None:intergenic | 25.0% |
| !! | AGAATAACAGAAATGTGTTT+TGG | + | chr3_1:65181875-65181894 | Msa0368480:intron | 25.0% |
| !!! | AGAAATGTGTTTTGGATATT+AGG | + | chr3_1:65181883-65181902 | Msa0368480:intron | 25.0% |
| ! | AAGAATAGTTAAGAAAACGT+TGG | - | chr3_1:65181910-65181929 | None:intergenic | 25.0% |
| !!! | AAGGTTTTAGTTATTGATTC+TGG | + | chr3_1:65182171-65182190 | Msa0368480:five_prime_UTR | 25.0% |
| ! | GAATGTCAAAATCCATTTAA+AGG | - | chr3_1:65183271-65183290 | None:intergenic | 25.0% |
| !! | GTTATTTCGATTAAGAACTT+TGG | + | chr3_1:65183496-65183515 | Msa0368480:intron | 25.0% |
| ! | TCTATATTGAAAGAGAAACA+TGG | + | chr3_1:65183676-65183695 | Msa0368480:intron | 25.0% |
| !! | ATTAGTAGATTAGCCAAAAT+AGG | + | chr3_1:65183827-65183846 | Msa0368480:intron | 25.0% |
| ! | CACATATATATATATATGGG+AGG | + | chr3_1:65184199-65184218 | Msa0368480:intron | 25.0% |
| !! | TTTTTATGGGTTTAGATTCA+AGG | + | chr3_1:65184339-65184358 | Msa0368480:intron | 25.0% |
| ! | ATTTACATGCCCTAAAATAA+TGG | + | chr3_1:65184457-65184476 | Msa0368480:intron | 25.0% |
| ! | TTTACATGCCCTAAAATAAT+GGG | + | chr3_1:65184458-65184477 | Msa0368480:intron | 25.0% |
| !!! | CATAACTACCCATTATTTTA+GGG | - | chr3_1:65184469-65184488 | None:intergenic | 25.0% |
| !! | TCATAACTACCCATTATTTT+AGG | - | chr3_1:65184470-65184489 | None:intergenic | 25.0% |
| !! | TTTTTATGGGTTTAGATTCA+AGG | + | chr3_1:65184339-65184358 | Msa0368480:intron | 25.0% |
| ! | TTCAAGGTTATTAATAGTGT+AGG | + | chr3_1:65184355-65184374 | Msa0368480:intron | 25.0% |
| ! | CATGTTATTACTTATTACTG+TGG | + | chr3_1:65184876-65184895 | Msa0368480:intron | 25.0% |
| ! | AAGTGCTTATAATCTGTAAA+TGG | + | chr3_1:65184931-65184950 | Msa0368480:intron | 25.0% |
| ! | ATGTTCATTGTATTAAGTCT+TGG | + | chr3_1:65185080-65185099 | Msa0368480:CDS | 25.0% |
| ! | TGTTCATTGTATTAAGTCTT+GGG | + | chr3_1:65185081-65185100 | Msa0368480:CDS | 25.0% |
| ! | GATTATGTGATAAGAAAATC+TGG | + | chr3_1:65185562-65185581 | Msa0368480:intron | 25.0% |
| !! | GTAAAATGCTTTTCAAAACA+AGG | - | chr3_1:65185830-65185849 | None:intergenic | 25.0% |
| !!! | ACTATTTTTTTTTGTTCCGA+AGG | + | chr3_1:65185902-65185921 | Msa0368480:intron | 25.0% |
| ! | CTAAGTATATAAAAACCTCA+TGG | + | chr3_1:65186140-65186159 | Msa0368480:intron | 25.0% |
| ! | TAACATCTATAGTTGTTAGA+CGG | - | chr3_1:65186497-65186516 | None:intergenic | 25.0% |
| ! | TATAAATGTACAACAGTACA+AGG | - | chr3_1:65186601-65186620 | None:intergenic | 25.0% |
| GAAATTGAAAATGGAATTGG+TGG | - | chr3_1:65181209-65181228 | None:intergenic | 30.0% | |
| TGAGGAGATGAAATTGAAAA+TGG | - | chr3_1:65181218-65181237 | None:intergenic | 30.0% | |
| GAAAAATGTGAAAACATAGC+AGG | - | chr3_1:65181248-65181267 | None:intergenic | 30.0% | |
| ! | TTGATTTTTGCTGCATTTTG+AGG | + | chr3_1:65181463-65181482 | Msa0368480:intron | 30.0% |
| ATGGTTTAAGGATCACTAAA+TGG | + | chr3_1:65181489-65181508 | Msa0368480:intron | 30.0% | |
| CATACAACATTAACAAATCG+CGG | - | chr3_1:65181545-65181564 | None:intergenic | 30.0% | |
| AACACTTCAATTCCATTTAG+TGG | - | chr3_1:65181694-65181713 | None:intergenic | 30.0% | |
| ! | TATGTTAGTTTATGGCCATA+TGG | + | chr3_1:65181718-65181737 | Msa0368480:intron | 30.0% |
| TGTTACTCATGCCTAAAATA+AGG | + | chr3_1:65181782-65181801 | Msa0368480:intron | 30.0% | |
| GTTACTCATGCCTAAAATAA+GGG | + | chr3_1:65181783-65181802 | Msa0368480:intron | 30.0% | |
| TTACTCATGCCTAAAATAAG+GGG | + | chr3_1:65181784-65181803 | Msa0368480:intron | 30.0% | |
| !! | TCAGCATTGATGAAAATTCA+CGG | - | chr3_1:65181853-65181872 | None:intergenic | 30.0% |
| GATTTCAGATAAGTGATGAT+AGG | + | chr3_1:65181969-65181988 | Msa0368480:intron | 30.0% | |
| TGATATTTCAGAATATCGGA+AGG | + | chr3_1:65182152-65182171 | Msa0368480:intron | 30.0% | |
| CAAGAGCTGATATAGAAAAT+GGG | + | chr3_1:65182262-65182281 | Msa0368480:CDS | 30.0% | |
| TATACAGAGTAAGTTGTCAA+TGG | - | chr3_1:65182541-65182560 | None:intergenic | 30.0% | |
| AGTTCAGTATCATGAATAAC+AGG | - | chr3_1:65182576-65182595 | None:intergenic | 30.0% | |
| ! | TTATGAAACTTTAAGAGCTC+TGG | + | chr3_1:65183120-65183139 | Msa0368480:CDS | 30.0% |
| !! | TGACAGATTACTTACTTTTG+GGG | - | chr3_1:65183229-65183248 | None:intergenic | 30.0% |
| !! | CTGACAGATTACTTACTTTT+GGG | - | chr3_1:65183230-65183249 | None:intergenic | 30.0% |
| ! | TCTGACAGATTACTTACTTT+TGG | - | chr3_1:65183231-65183250 | None:intergenic | 30.0% |
| TGTTATTACCTCCCTTTAAA+TGG | + | chr3_1:65183256-65183275 | Msa0368480:intron | 30.0% | |
| !! | AATAGTGAGTTTCACTTTTC+GGG | - | chr3_1:65183340-65183359 | None:intergenic | 30.0% |
| !! | CAATAGTGAGTTTCACTTTT+CGG | - | chr3_1:65183341-65183360 | None:intergenic | 30.0% |
| TGATATATTGATCGATGACA+TGG | + | chr3_1:65183451-65183470 | Msa0368480:intron | 30.0% | |
| GTAATAATAGGCATCACTAA+AGG | - | chr3_1:65183524-65183543 | None:intergenic | 30.0% | |
| ACACGACATAGAGTAATAAT+AGG | - | chr3_1:65183536-65183555 | None:intergenic | 30.0% | |
| ! | TTTTATCTGGCAATATGAAG+AGG | + | chr3_1:65183561-65183580 | Msa0368480:intron | 30.0% |
| GGTAGTTATAATTTAACAGC+TGG | - | chr3_1:65183940-65183959 | None:intergenic | 30.0% | |
| ATTCACTTGTCTAGACAAAA+TGG | - | chr3_1:65184804-65184823 | None:intergenic | 30.0% | |
| !! | ATAACTTTGCTGATTCTTTG+AGG | + | chr3_1:65184840-65184859 | Msa0368480:intron | 30.0% |
| !! | TAACTTTGCTGATTCTTTGA+GGG | + | chr3_1:65184841-65184860 | Msa0368480:intron | 30.0% |
| GTTCATTGTATTAAGTCTTG+GGG | + | chr3_1:65185082-65185101 | Msa0368480:CDS | 30.0% | |
| ! | TTGTTACTTAACTCCCATAT+GGG | - | chr3_1:65185128-65185147 | None:intergenic | 30.0% |
| ! | TTTGTTACTTAACTCCCATA+TGG | - | chr3_1:65185129-65185148 | None:intergenic | 30.0% |
| ! | TCTTTTCATTTAGATTGGAG+TGG | + | chr3_1:65185201-65185220 | Msa0368480:intron | 30.0% |
| ! | GATTCATTTCTTTTCGTTTG+TGG | + | chr3_1:65185235-65185254 | Msa0368480:intron | 30.0% |
| ATCTAACATAGGGTTTACAT+AGG | + | chr3_1:65185594-65185613 | Msa0368480:intron | 30.0% | |
| TCTAACATAGGGTTTACATA+GGG | + | chr3_1:65185595-65185614 | Msa0368480:intron | 30.0% | |
| CTTGAGTTTACCTATTGAAA+AGG | + | chr3_1:65185870-65185889 | Msa0368480:intron | 30.0% | |
| TGTAGATATCTGACTTTACA+TGG | + | chr3_1:65186008-65186027 | Msa0368480:intron | 30.0% | |
| CAAGGAAAAAACTAGATTAG+GGG | - | chr3_1:65186043-65186062 | None:intergenic | 30.0% | |
| GCAAGGAAAAAACTAGATTA+GGG | - | chr3_1:65186044-65186063 | None:intergenic | 30.0% | |
| ! | TGACAAACTTGGTAATCTAT+AGG | - | chr3_1:65186532-65186551 | None:intergenic | 30.0% |
| TATAGATTACCAAGTTTGTC+AGG | + | chr3_1:65186531-65186550 | Msa0368480:three_prime_UTR | 30.0% | |
| !! | TTAAGTTTGTACTTGCTGTT+TGG | - | chr3_1:65186570-65186589 | None:intergenic | 30.0% |
| ! | TTTTCGTATGTGTCTTGGTT+CGG | - | chr3_1:65180979-65180998 | None:intergenic | 35.0% |
| ! | CGTATTTTTCGTATGTGTCT+TGG | - | chr3_1:65180984-65181003 | None:intergenic | 35.0% |
| AGACACATACGAAAAATACG+TGG | + | chr3_1:65180984-65181003 | Msa0368480:five_prime_UTR | 35.0% | |
| GAACAAAAGCTGAATCTGAT+CGG | - | chr3_1:65181138-65181157 | None:intergenic | 35.0% | |
| ! | AACATAGCAGGAACATTTTG+AGG | - | chr3_1:65181236-65181255 | None:intergenic | 35.0% |
| ATCGTTTATCATGCTTGAAG+TGG | + | chr3_1:65181425-65181444 | Msa0368480:intron | 35.0% | |
| TTATCATGCTTGAAGTGGTT+TGG | + | chr3_1:65181430-65181449 | Msa0368480:intron | 35.0% | |
| TGCAGCAAAAATCAAAACCT+AGG | - | chr3_1:65181458-65181477 | None:intergenic | 35.0% | |
| !! | TTGCTGCATTTTGAGGAAAA+TGG | + | chr3_1:65181470-65181489 | Msa0368480:intron | 35.0% |
| TCGAAGATTACACAATTGCA+AGG | - | chr3_1:65181623-65181642 | None:intergenic | 35.0% | |
| TGGTGTGTTTGTAAGGAAAA+TGG | + | chr3_1:65181660-65181679 | Msa0368480:intron | 35.0% | |
| ATGGTTTAAGGACCACTAAA+TGG | + | chr3_1:65181679-65181698 | Msa0368480:intron | 35.0% | |
| AATCCCTAACAACTACCATA+TGG | - | chr3_1:65181736-65181755 | None:intergenic | 35.0% | |
| GATGATAGGTTTAGTATGTG+TGG | + | chr3_1:65181983-65182002 | Msa0368480:intron | 35.0% | |
| AATCACAGAGCGGATATAAT+CGG | - | chr3_1:65182065-65182084 | None:intergenic | 35.0% | |
| TCCTCGAAAAACAAAACTCA+TGG | - | chr3_1:65182241-65182260 | None:intergenic | 35.0% | |
| GCAAGAGCTGATATAGAAAA+TGG | + | chr3_1:65182261-65182280 | Msa0368480:CDS | 35.0% | |
| ! | GATATAGAAAATGGGTTTCC+AGG | + | chr3_1:65182270-65182289 | Msa0368480:CDS | 35.0% |
| CATCGAAGAAAACACAGAAA+AGG | - | chr3_1:65182515-65182534 | None:intergenic | 35.0% | |
| !! | TGTCACCAAATTTTCTGGTA+AGG | + | chr3_1:65182605-65182624 | Msa0368480:intron | 35.0% |
| GAAGACCTTACCAGAAAATT+TGG | - | chr3_1:65182613-65182632 | None:intergenic | 35.0% | |
| !! | AACTTTAAGAGCTCTGGATT+CGG | + | chr3_1:65183126-65183145 | Msa0368480:CDS | 35.0% |
| GTCAAAATCCATTTAAAGGG+AGG | - | chr3_1:65183267-65183286 | None:intergenic | 35.0% | |
| !! | ATAGTGAGTTTCACTTTTCG+GGG | - | chr3_1:65183339-65183358 | None:intergenic | 35.0% |
| ATGTGAGGGTAAACAAGTAA+AGG | + | chr3_1:65183390-65183409 | Msa0368480:intron | 35.0% | |
| !!! | ATGGAAATGCTGATTTTCAC+TGG | + | chr3_1:65183470-65183489 | Msa0368480:intron | 35.0% |
| !! | TGTCGTGTAGTCATTTTATC+TGG | + | chr3_1:65183548-65183567 | Msa0368480:intron | 35.0% |
| ! | AGTTATCTTGAAGAGCATGT+TGG | + | chr3_1:65183739-65183758 | Msa0368480:intron | 35.0% |
| AAGCACTTGTTTGACTGTTT+AGG | - | chr3_1:65183805-65183824 | None:intergenic | 35.0% | |
| GGTAGTTATGATTTAACAGC+TGG | + | chr3_1:65184293-65184312 | Msa0368480:intron | 35.0% | |
| GGTAGTTATGATTTAACAGC+TGG | + | chr3_1:65184293-65184312 | Msa0368480:intron | 35.0% | |
| CTTGTCTAGACAAAATGGAA+GGG | - | chr3_1:65184799-65184818 | None:intergenic | 35.0% | |
| ACTTGTCTAGACAAAATGGA+AGG | - | chr3_1:65184800-65184819 | None:intergenic | 35.0% | |
| GACACAGGATAATTCAAATG+CGG | + | chr3_1:65185263-65185282 | Msa0368480:CDS | 35.0% | |
| AGGTAAACTCAAGCTCATAA+TGG | - | chr3_1:65185863-65185882 | None:intergenic | 35.0% | |
| GGAGAAATCATTCATTCCTT+CGG | - | chr3_1:65185921-65185940 | None:intergenic | 35.0% | |
| GGCAAGGAAAAAACTAGATT+AGG | - | chr3_1:65186045-65186064 | None:intergenic | 35.0% | |
| CAGTGGACATAATGATATTG+CGG | + | chr3_1:65186316-65186335 | Msa0368480:CDS | 35.0% | |
| ACATAATGATATTGCGGACA+TGG | + | chr3_1:65186322-65186341 | Msa0368480:CDS | 35.0% | |
| !! | TCTTGGTTCGGTAAAATGCA+TGG | - | chr3_1:65180967-65180986 | None:intergenic | 40.0% |
| AGGTTGAAGATCACGAGAAT+CGG | - | chr3_1:65181041-65181060 | None:intergenic | 40.0% | |
| ! | ATTCGATTCGATTCGATTCG+AGG | - | chr3_1:65181061-65181080 | None:intergenic | 40.0% |
| AAGCTGAATCTGATCGGAAA+CGG | - | chr3_1:65181132-65181151 | None:intergenic | 40.0% | |
| CATTTGGGAATGGAGACTTA+CGG | - | chr3_1:65181172-65181191 | None:intergenic | 40.0% | |
| !! | TGAGAGAAAGCATTTGGGAA+TGG | - | chr3_1:65181182-65181201 | None:intergenic | 40.0% |
| TTGCATAATGAATGGGTGCA+GGG | + | chr3_1:65181569-65181588 | Msa0368480:intron | 40.0% | |
| !! | CGATAATGCTTGAAGCGTTT+TGG | + | chr3_1:65181640-65181659 | Msa0368480:intron | 40.0% |
| !! | AGCGTTTTGGTGTGTTTGTA+AGG | + | chr3_1:65181653-65181672 | Msa0368480:intron | 40.0% |
| ATGGCCATATGGTAGTTGTT+AGG | + | chr3_1:65181729-65181748 | Msa0368480:intron | 40.0% | |
| TGGCCATATGGTAGTTGTTA+GGG | + | chr3_1:65181730-65181749 | Msa0368480:intron | 40.0% | |
| ATCACAGAGCGGATATAATC+GGG | - | chr3_1:65182064-65182083 | None:intergenic | 40.0% | |
| ATTCAACAGGAATCACAGAG+CGG | - | chr3_1:65182075-65182094 | None:intergenic | 40.0% | |
| GCTTGAGGATGAAATTCAAC+AGG | - | chr3_1:65182088-65182107 | None:intergenic | 40.0% | |
| CAACACTAAACACATGCTTG+AGG | - | chr3_1:65182103-65182122 | None:intergenic | 40.0% | |
| !!! | GCCATGAGTTTTGTTTTTCG+AGG | + | chr3_1:65182237-65182256 | Msa0368480:exon | 40.0% |
| TTCCAGGATTTATACCTGAG+AGG | + | chr3_1:65182286-65182305 | Msa0368480:CDS | 40.0% | |
| ! | GTGAGTGAGTTGGAATTACT+AGG | - | chr3_1:65182429-65182448 | None:intergenic | 40.0% |
| TACGAGAAAAGTGAGTGAGT+TGG | - | chr3_1:65182439-65182458 | None:intergenic | 40.0% | |
| !! | TCACTCACTTTTCTCGTAAC+AGG | + | chr3_1:65182441-65182460 | Msa0368480:CDS | 40.0% |
| ! | CCAGAAAATTTGGTGACATC+TGG | - | chr3_1:65182603-65182622 | None:intergenic | 40.0% |
| ! | CCAGATGTCACCAAATTTTC+TGG | + | chr3_1:65182600-65182619 | Msa0368480:CDS | 40.0% |
| ! | TCTTGATGGCTACAATGCTA+AGG | + | chr3_1:65182748-65182767 | Msa0368480:CDS | 40.0% |
| ! | TATGCAATCGTAGTTCTGTG+TGG | - | chr3_1:65182845-65182864 | None:intergenic | 40.0% |
| ATCTCTTCCTCAGTCATAGA+AGG | - | chr3_1:65183169-65183188 | None:intergenic | 40.0% | |
| TCTTCCTGTCCACAAATACA+AGG | + | chr3_1:65183195-65183214 | Msa0368480:CDS | 40.0% | |
| GAAACCTTGTATTTGTGGAC+AGG | - | chr3_1:65183202-65183221 | None:intergenic | 40.0% | |
| GTCCACAAATACAAGGTTTC+TGG | + | chr3_1:65183202-65183221 | Msa0368480:CDS | 40.0% | |
| GACCAGAAACCTTGTATTTG+TGG | - | chr3_1:65183207-65183226 | None:intergenic | 40.0% | |
| ATTAGTGAGTAGTGACTGAC+AGG | + | chr3_1:65183605-65183624 | Msa0368480:intron | 40.0% | |
| ! | TGGCTTATGAACGCCTATTT+TGG | - | chr3_1:65183843-65183862 | None:intergenic | 40.0% |
| ! | ATTCTCTCTGGTGCCAATTT+GGG | + | chr3_1:65184092-65184111 | Msa0368480:intron | 40.0% |
| ATCTATGTGTGTCTGTGTGA+GGG | - | chr3_1:65184409-65184428 | None:intergenic | 40.0% | |
| TATCTATGTGTGTCTGTGTG+AGG | - | chr3_1:65184410-65184429 | None:intergenic | 40.0% | |
| ATCTATGTGTGTCTGTGTGA+GGG | - | chr3_1:65184409-65184428 | None:intergenic | 40.0% | |
| TATCTATGTGTGTCTGTGTG+AGG | - | chr3_1:65184410-65184429 | None:intergenic | 40.0% | |
| ACCACTTGATGTTCCCATAT+GGG | + | chr3_1:65185112-65185131 | Msa0368480:CDS | 40.0% | |
| TTCATTTAGATTGGAGTGGC+AGG | + | chr3_1:65185205-65185224 | Msa0368480:intron | 40.0% | |
| CAGGATAATTCAAATGCGGT+TGG | + | chr3_1:65185267-65185286 | Msa0368480:CDS | 40.0% | |
| TGCTTGGAGCAAGTTAATGT+TGG | + | chr3_1:65185330-65185349 | Msa0368480:CDS | 40.0% | |
| CAGAGATGATTCAGTTGAAC+TGG | - | chr3_1:65185463-65185482 | None:intergenic | 40.0% | |
| ! | GATAAGAAAATCTGGAGCGT+TGG | + | chr3_1:65185570-65185589 | Msa0368480:intron | 40.0% |
| AACATAGGGTTTACATAGGG+TGG | + | chr3_1:65185598-65185617 | Msa0368480:intron | 40.0% | |
| CAAGGGCAATGCTACAAAAA+AGG | - | chr3_1:65185812-65185831 | None:intergenic | 40.0% | |
| ! | TGTTCAGGTGCCTTTTCAAT+AGG | - | chr3_1:65185883-65185902 | None:intergenic | 40.0% |
| GGAAAAAACTAGATTAGGGG+AGG | - | chr3_1:65186040-65186059 | None:intergenic | 40.0% | |
| !!! | CTACACAACTTTTTTGGGCA+AGG | - | chr3_1:65186061-65186080 | None:intergenic | 40.0% |
| ! | TCGACAAAGTATCAACCATG+AGG | - | chr3_1:65186158-65186177 | None:intergenic | 40.0% |
| TCTTGTAATTACCCTGACGT+AGG | + | chr3_1:65186451-65186470 | Msa0368480:three_prime_UTR | 40.0% | |
| CTTGTAATTACCCTGACGTA+GGG | + | chr3_1:65186452-65186471 | Msa0368480:three_prime_UTR | 40.0% | |
| ATCTGATCTTCTTCGCTCTC+TGG | - | chr3_1:65181084-65181103 | None:intergenic | 45.0% | |
| ATCTGATCGGAAACGGAGTT+TGG | - | chr3_1:65181125-65181144 | None:intergenic | 45.0% | |
| GAGACTTACGGAAATTGACG+AGG | - | chr3_1:65181160-65181179 | None:intergenic | 45.0% | |
| !! | GCGTGTGAGAGAAAGCATTT+GGG | - | chr3_1:65181187-65181206 | None:intergenic | 45.0% |
| CTTGCATAATGAATGGGTGC+AGG | + | chr3_1:65181568-65181587 | Msa0368480:intron | 45.0% | |
| GTTCATTCTGTTTGCAGCTC+TGG | + | chr3_1:65182709-65182728 | Msa0368480:intron | 45.0% | |
| !!! | GGTGCTTGGTGTTTTCTTGA+TGG | + | chr3_1:65182734-65182753 | Msa0368480:CDS | 45.0% |
| TTCAGCTGGCACTTCTTGAT+CGG | + | chr3_1:65182916-65182935 | Msa0368480:CDS | 45.0% | |
| ! | GATCGGGAGTTTGATGATCT+AGG | + | chr3_1:65182933-65182952 | Msa0368480:CDS | 45.0% |
| TACTGCACCTTCTATGACTG+AGG | + | chr3_1:65183159-65183178 | Msa0368480:CDS | 45.0% | |
| !! | AGTTTCACTTTTCGGGGATG+GGG | - | chr3_1:65183333-65183352 | None:intergenic | 45.0% |
| !! | GAGTTTCACTTTTCGGGGAT+GGG | - | chr3_1:65183334-65183353 | None:intergenic | 45.0% |
| !! | TGAGTTTCACTTTTCGGGGA+TGG | - | chr3_1:65183335-65183354 | None:intergenic | 45.0% |
| GAGCGAGATTGTGTTTGGAT+TGG | - | chr3_1:65183863-65183882 | None:intergenic | 45.0% | |
| AGAGAGAGCGAGATTGTGTT+TGG | - | chr3_1:65183868-65183887 | None:intergenic | 45.0% | |
| TTGACACACACAACCCACTT+GGG | + | chr3_1:65184008-65184027 | Msa0368480:intron | 45.0% | |
| ! | GATTCTCTCTGGTGCCAATT+TGG | + | chr3_1:65184091-65184110 | Msa0368480:intron | 45.0% |
| GCTAAATAGCCCACCCAAAT+TGG | - | chr3_1:65184108-65184127 | None:intergenic | 45.0% | |
| TCGTGTTGAGCTTGTAGACT+TGG | + | chr3_1:65184994-65185013 | Msa0368480:intron | 45.0% | |
| GACCACTTGATGTTCCCATA+TGG | + | chr3_1:65185111-65185130 | Msa0368480:CDS | 45.0% | |
| TCCCATATGGGAACATCAAG+TGG | - | chr3_1:65185116-65185135 | None:intergenic | 45.0% | |
| CAATGAAACAGACCTGATGC+AGG | - | chr3_1:65185380-65185399 | None:intergenic | 45.0% | |
| !! | GAGCGTTGGCATCTAACATA+GGG | + | chr3_1:65185584-65185603 | Msa0368480:intron | 45.0% |
| CTGCTCGAAATTTGCAGACA+GGG | - | chr3_1:65186280-65186299 | None:intergenic | 45.0% | |
| TGCAAATTTCGAGCAGGATC+TGG | + | chr3_1:65186284-65186303 | Msa0368480:CDS | 45.0% | |
| GCAAATTTCGAGCAGGATCT+GGG | + | chr3_1:65186285-65186304 | Msa0368480:CDS | 45.0% | |
| TTCCTCAAATCCCTACGTCA+GGG | - | chr3_1:65186465-65186484 | None:intergenic | 45.0% | |
| ATTCCTCAAATCCCTACGTC+AGG | - | chr3_1:65186466-65186485 | None:intergenic | 45.0% | |
| ACATAGCGACCTGACAAACT+TGG | - | chr3_1:65186543-65186562 | None:intergenic | 45.0% | |
| !! | GGCGTGTGAGAGAAAGCATT+TGG | - | chr3_1:65181188-65181207 | None:intergenic | 50.0% |
| ! | CTTGAAGTGGTTTGGCTCCT+AGG | + | chr3_1:65181438-65181457 | Msa0368480:intron | 50.0% |
| CGCCTCTCAGGTATAAATCC+TGG | - | chr3_1:65182291-65182310 | None:intergenic | 50.0% | |
| ! | TATACCTGAGAGGCGTGCAT+TGG | + | chr3_1:65182296-65182315 | Msa0368480:CDS | 50.0% |
| ! | ATTCTGTTTGCAGCTCTGGC+TGG | + | chr3_1:65182713-65182732 | Msa0368480:intron | 50.0% |
| ! | GTAGTTCTGTGTGGCCAAGA+AGG | - | chr3_1:65182836-65182855 | None:intergenic | 50.0% |
| CTTGCAAGTGCTATCGATGG+AGG | - | chr3_1:65182870-65182889 | None:intergenic | 50.0% | |
| TCAGCTGGCACTTCTTGATC+GGG | + | chr3_1:65182917-65182936 | Msa0368480:CDS | 50.0% | |
| CTTGACACACACAACCCACT+TGG | + | chr3_1:65184007-65184026 | Msa0368480:intron | 50.0% | |
| !! | GTGGTATTGGCTTGGGTCTT+GGG | + | chr3_1:65184039-65184058 | Msa0368480:intron | 50.0% |
| GAATCGAACCTGAGACCTTG+CGG | - | chr3_1:65184076-65184095 | None:intergenic | 50.0% | |
| GTCTCAGGTTCGATTCTCTC+TGG | + | chr3_1:65184080-65184099 | Msa0368480:intron | 50.0% | |
| ! | TCTCTGGTGCCAATTTGGGT+GGG | + | chr3_1:65184096-65184115 | Msa0368480:intron | 50.0% |
| ! | AGGCGTTGCTTGTTGCATTG+AGG | - | chr3_1:65184715-65184734 | None:intergenic | 50.0% |
| ACAAGCAACGCCTTCCACTT+CGG | + | chr3_1:65184722-65184741 | Msa0368480:CDS | 50.0% | |
| AGATGATACCTCAGCCGAAG+TGG | - | chr3_1:65184739-65184758 | None:intergenic | 50.0% | |
| TACCGCCAGGGATATTACAC+GGG | - | chr3_1:65184906-65184925 | None:intergenic | 50.0% | |
| GTACCGCCAGGGATATTACA+CGG | - | chr3_1:65184907-65184926 | None:intergenic | 50.0% | |
| TGTAATATCCCTGGCGGTAC+AGG | + | chr3_1:65184907-65184926 | Msa0368480:intron | 50.0% | |
| GTAATATCCCTGGCGGTACA+GGG | + | chr3_1:65184908-65184927 | Msa0368480:intron | 50.0% | |
| TCGTTTGTGGCAGAAGACAC+AGG | + | chr3_1:65185248-65185267 | Msa0368480:intron | 50.0% | |
| GCAAGTGAGCTCATCATCAG+AGG | - | chr3_1:65185304-65185323 | None:intergenic | 50.0% | |
| GCTCACTTGCAGTGTATGCT+TGG | + | chr3_1:65185314-65185333 | Msa0368480:CDS | 50.0% | |
| AAACAGACCTGATGCAGGCA+GGG | - | chr3_1:65185375-65185394 | None:intergenic | 50.0% | |
| !! | GGAGCGTTGGCATCTAACAT+AGG | + | chr3_1:65185583-65185602 | Msa0368480:intron | 50.0% |
| ! | ACGCTAGTTGCATTGATCCC+TGG | + | chr3_1:65186234-65186253 | Msa0368480:CDS | 50.0% |
| CCTGCTCGAAATTTGCAGAC+AGG | - | chr3_1:65186281-65186300 | None:intergenic | 50.0% | |
| CCTGTCTGCAAATTTCGAGC+AGG | + | chr3_1:65186278-65186297 | Msa0368480:CDS | 50.0% | |
| AATTTCGAGCAGGATCTGGG+TGG | + | chr3_1:65186288-65186307 | Msa0368480:CDS | 50.0% | |
| TACCCTGACGTAGGGATTTG+AGG | + | chr3_1:65186460-65186479 | Msa0368480:three_prime_UTR | 50.0% | |
| CATACCAATGCACGCCTCTC+AGG | - | chr3_1:65182303-65182322 | None:intergenic | 55.0% | |
| CGGCTTGCAAGTGCTATCGA+TGG | - | chr3_1:65182873-65182892 | None:intergenic | 55.0% | |
| TCGATAGCACTTGCAAGCCG+AGG | + | chr3_1:65182873-65182892 | Msa0368480:CDS | 55.0% | |
| CGATAGCACTTGCAAGCCGA+GGG | + | chr3_1:65182874-65182893 | Msa0368480:CDS | 55.0% | |
| CACACACAACCCACTTGGGT+TGG | + | chr3_1:65184012-65184031 | Msa0368480:intron | 55.0% | |
| !! | TTGGGTTGGCCTGGTGGTAT+TGG | + | chr3_1:65184026-65184045 | Msa0368480:intron | 55.0% |
| !! | TTGGCCTGGTGGTATTGGCT+TGG | + | chr3_1:65184031-65184050 | Msa0368480:intron | 55.0% |
| !! | TGGCCTGGTGGTATTGGCTT+GGG | + | chr3_1:65184032-65184051 | Msa0368480:intron | 55.0% |
| AGACCCAAGCCAATACCACC+AGG | - | chr3_1:65184038-65184057 | None:intergenic | 55.0% | |
| !! | GGTGGTATTGGCTTGGGTCT+TGG | + | chr3_1:65184038-65184057 | Msa0368480:intron | 55.0% |
| ! | CTCTCTGGTGCCAATTTGGG+TGG | + | chr3_1:65184095-65184114 | Msa0368480:intron | 55.0% |
| GTGTCTGTGTGAGGGCAGAT+TGG | - | chr3_1:65184401-65184420 | None:intergenic | 55.0% | |
| GTGTCTGTGTGAGGGCAGAT+TGG | - | chr3_1:65184401-65184420 | None:intergenic | 55.0% | |
| GATACCTCAGCCGAAGTGGA+AGG | - | chr3_1:65184735-65184754 | None:intergenic | 55.0% | |
| GTCTCCCCGTGTAATATCCC+TGG | + | chr3_1:65184898-65184917 | Msa0368480:intron | 55.0% | |
| TCCCCGTGTAATATCCCTGG+CGG | + | chr3_1:65184901-65184920 | Msa0368480:intron | 55.0% | |
| ACCGCCAGGGATATTACACG+GGG | - | chr3_1:65184905-65184924 | None:intergenic | 55.0% | |
| GAAACAGACCTGATGCAGGC+AGG | - | chr3_1:65185376-65185395 | None:intergenic | 55.0% | |
| ! | GTTGCATTGATCCCTGGCTG+CGG | + | chr3_1:65186240-65186259 | Msa0368480:CDS | 55.0% |
| GGATCTGGGTGGAATGACAG+TGG | + | chr3_1:65186299-65186318 | Msa0368480:CDS | 55.0% | |
| ! | TTGCAGCTCTGGCTGGTGCT+TGG | + | chr3_1:65182720-65182739 | Msa0368480:intron | 60.0% |
| GGCTGCTGCTGCATGAGCTT+GGG | - | chr3_1:65182808-65182827 | None:intergenic | 60.0% | |
| TGGCTGCTGCTGCATGAGCT+TGG | - | chr3_1:65182809-65182828 | None:intergenic | 60.0% | |
| TGTGTGGCCAAGAAGGCCAC+TGG | - | chr3_1:65182829-65182848 | None:intergenic | 60.0% | |
| GCAGGGTCTCAGACTTCAGC+TGG | + | chr3_1:65182902-65182921 | Msa0368480:CDS | 60.0% | |
| !! | ACAACCCACTTGGGTTGGCC+TGG | + | chr3_1:65184017-65184036 | Msa0368480:intron | 60.0% |
| ACCACCAGGCCAACCCAAGT+GGG | - | chr3_1:65184024-65184043 | None:intergenic | 60.0% | |
| TACCACCAGGCCAACCCAAG+TGG | - | chr3_1:65184025-65184044 | None:intergenic | 60.0% | |
| TCGAACCTGAGACCTTGCGG+AGG | - | chr3_1:65184073-65184092 | None:intergenic | 60.0% | |
| AACGCCTTCCACTTCGGCTG+AGG | + | chr3_1:65184728-65184747 | Msa0368480:CDS | 60.0% | |
| AGCACTTCCCTGTACCGCCA+GGG | - | chr3_1:65184918-65184937 | None:intergenic | 60.0% | |
| AAGCACTTCCCTGTACCGCC+AGG | - | chr3_1:65184919-65184938 | None:intergenic | 60.0% | |
| ! | TAGCTTGCCCTGCCTGCATC+AGG | + | chr3_1:65185365-65185384 | Msa0368480:CDS | 60.0% |
| ATCCCTGGCTGCGGCAACAA+GGG | + | chr3_1:65186249-65186268 | Msa0368480:CDS | 60.0% | |
| GCTCATGCAGCAGCAGCCAG+TGG | + | chr3_1:65182810-65182829 | Msa0368480:CDS | 65.0% | |
| GCAGCAGCCAGTGGCCTTCT+TGG | + | chr3_1:65182819-65182838 | Msa0368480:CDS | 65.0% | |
| TGAGACCCTGCAGACGCCCT+CGG | - | chr3_1:65182893-65182912 | None:intergenic | 65.0% | |
| !! | ACCCACTTGGGTTGGCCTGG+TGG | + | chr3_1:65184020-65184039 | Msa0368480:intron | 65.0% |
| ! | TGGGAGTGTGCTCCTCCGCA+AGG | + | chr3_1:65184058-65184077 | Msa0368480:intron | 65.0% |
| GTGCTCCTCCGCAAGGTCTC+AGG | + | chr3_1:65184065-65184084 | Msa0368480:intron | 65.0% | |
| GATCCCTGGCTGCGGCAACA+AGG | + | chr3_1:65186248-65186267 | Msa0368480:CDS | 65.0% | |
| GTCCCTTGTTGCCGCAGCCA+GGG | - | chr3_1:65186254-65186273 | None:intergenic | 65.0% | |
| AGTCCCTTGTTGCCGCAGCC+AGG | - | chr3_1:65186255-65186274 | None:intergenic | 65.0% | |
| !! | TGCAAGCCGAGGGCGTCTGC+AGG | + | chr3_1:65182884-65182903 | Msa0368480:CDS | 70.0% |
| !! | GCAAGCCGAGGGCGTCTGCA+GGG | + | chr3_1:65182885-65182904 | Msa0368480:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 65180959 | 65186645 | 65180959 | ID=Msa0368480;Name=Msa0368480 |
| chr3_1 | mRNA | 65180959 | 65186645 | 65180959 | ID=Msa0368480-mRNA-1;Parent=Msa0368480;Name=Msa0368480-mRNA-1;_AED=0.19;_eAED=0.19;_QI=289|0.77|0.9|1|0.88|0.8|10|296|304 |
| chr3_1 | exon | 65180959 | 65181170 | 65180959 | ID=Msa0368480-mRNA-1:exon:13043;Parent=Msa0368480-mRNA-1 |
| chr3_1 | exon | 65182163 | 65182317 | 65182163 | ID=Msa0368480-mRNA-1:exon:13044;Parent=Msa0368480-mRNA-1 |
| chr3_1 | exon | 65182408 | 65182462 | 65182408 | ID=Msa0368480-mRNA-1:exon:13045;Parent=Msa0368480-mRNA-1 |
| chr3_1 | exon | 65182569 | 65182621 | 65182569 | ID=Msa0368480-mRNA-1:exon:13046;Parent=Msa0368480-mRNA-1 |
| chr3_1 | exon | 65182726 | 65182954 | 65182726 | ID=Msa0368480-mRNA-1:exon:13047;Parent=Msa0368480-mRNA-1 |
| chr3_1 | exon | 65183119 | 65183233 | 65183119 | ID=Msa0368480-mRNA-1:exon:13048;Parent=Msa0368480-mRNA-1 |
| chr3_1 | exon | 65184704 | 65184749 | 65184704 | ID=Msa0368480-mRNA-1:exon:13049;Parent=Msa0368480-mRNA-1 |
| chr3_1 | exon | 65185068 | 65185160 | 65185068 | ID=Msa0368480-mRNA-1:exon:13050;Parent=Msa0368480-mRNA-1 |
| chr3_1 | exon | 65185261 | 65185386 | 65185261 | ID=Msa0368480-mRNA-1:exon:13051;Parent=Msa0368480-mRNA-1 |
| chr3_1 | exon | 65186230 | 65186645 | 65186230 | ID=Msa0368480-mRNA-1:exon:13052;Parent=Msa0368480-mRNA-1 |
| chr3_1 | five_prime_UTR | 65180959 | 65181170 | 65180959 | ID=Msa0368480-mRNA-1:five_prime_utr;Parent=Msa0368480-mRNA-1 |
| chr3_1 | five_prime_UTR | 65182163 | 65182239 | 65182163 | ID=Msa0368480-mRNA-1:five_prime_utr;Parent=Msa0368480-mRNA-1 |
| chr3_1 | CDS | 65182240 | 65182317 | 65182240 | ID=Msa0368480-mRNA-1:cds;Parent=Msa0368480-mRNA-1 |
| chr3_1 | CDS | 65182408 | 65182462 | 65182408 | ID=Msa0368480-mRNA-1:cds;Parent=Msa0368480-mRNA-1 |
| chr3_1 | CDS | 65182569 | 65182621 | 65182569 | ID=Msa0368480-mRNA-1:cds;Parent=Msa0368480-mRNA-1 |
| chr3_1 | CDS | 65182726 | 65182954 | 65182726 | ID=Msa0368480-mRNA-1:cds;Parent=Msa0368480-mRNA-1 |
| chr3_1 | CDS | 65183119 | 65183233 | 65183119 | ID=Msa0368480-mRNA-1:cds;Parent=Msa0368480-mRNA-1 |
| chr3_1 | CDS | 65184704 | 65184749 | 65184704 | ID=Msa0368480-mRNA-1:cds;Parent=Msa0368480-mRNA-1 |
| chr3_1 | CDS | 65185068 | 65185160 | 65185068 | ID=Msa0368480-mRNA-1:cds;Parent=Msa0368480-mRNA-1 |
| chr3_1 | CDS | 65185261 | 65185386 | 65185261 | ID=Msa0368480-mRNA-1:cds;Parent=Msa0368480-mRNA-1 |
| chr3_1 | CDS | 65186230 | 65186349 | 65186230 | ID=Msa0368480-mRNA-1:cds;Parent=Msa0368480-mRNA-1 |
| chr3_1 | three_prime_UTR | 65186350 | 65186645 | 65186350 | ID=Msa0368480-mRNA-1:three_prime_utr;Parent=Msa0368480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
