Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1085060 | GFY82169.1 | 74.138 | 290 | 55 | 1 | 1 | 290 | 1 | 270 | 1.80e-154 | 444 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1085060 | sp|Q9M2S6|SDIR1_ARATH | 69.707 | 307 | 56 | 5 | 1 | 304 | 1 | 273 | 1.69e-137 | 392 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1085060 | A0A072UZ54 | 89.474 | 304 | 1 | 1 | 1 | 304 | 1 | 273 | 0.0 | 547 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0368480 | Msa1085060 | 0.966595 | 3.932143e-126 | -8.615850e-47 |
| Msa0410290 | Msa1085060 | 0.824463 | 7.962142e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1085060 | MtrunA17_Chr3g0112041 | 89.474 | 304 | 1 | 1 | 1 | 304 | 1 | 273 | 0.0 | 547 |
| Msa1085060 | MtrunA17_Chr4g0031921 | 51.961 | 306 | 110 | 3 | 1 | 304 | 1 | 271 | 9.85e-100 | 294 |
| Msa1085060 | MtrunA17_Chr4g0031911 | 51.307 | 306 | 112 | 3 | 1 | 304 | 1 | 271 | 1.59e-99 | 293 |
| Msa1085060 | MtrunA17_Chr6g0461611 | 45.283 | 53 | 29 | 0 | 235 | 287 | 227 | 279 | 7.22e-14 | 70.9 |
| Msa1085060 | MtrunA17_Chr1g0169651 | 61.905 | 42 | 16 | 0 | 244 | 285 | 683 | 724 | 7.90e-14 | 72.0 |
| Msa1085060 | MtrunA17_Chr5g0417501 | 51.163 | 43 | 21 | 0 | 244 | 286 | 115 | 157 | 2.47e-12 | 65.5 |
| Msa1085060 | MtrunA17_Chr5g0406031 | 49.057 | 53 | 26 | 1 | 234 | 285 | 179 | 231 | 2.59e-12 | 65.5 |
| Msa1085060 | MtrunA17_Chr8g0371291 | 50.000 | 52 | 25 | 1 | 235 | 285 | 171 | 222 | 4.58e-12 | 64.7 |
| Msa1085060 | MtrunA17_Chr2g0305161 | 50.000 | 50 | 24 | 1 | 236 | 285 | 135 | 183 | 1.15e-11 | 62.8 |
| Msa1085060 | MtrunA17_Chr1g0200721 | 52.830 | 53 | 24 | 1 | 243 | 294 | 234 | 286 | 1.42e-11 | 64.7 |
| Msa1085060 | MtrunA17_Chr7g0275601 | 51.020 | 49 | 23 | 1 | 238 | 285 | 102 | 150 | 2.46e-11 | 61.2 |
| Msa1085060 | MtrunA17_Chr8g0388231 | 52.941 | 51 | 21 | 2 | 236 | 285 | 331 | 379 | 4.18e-11 | 63.2 |
| Msa1085060 | MtrunA17_Chr6g0451051 | 45.455 | 55 | 29 | 1 | 242 | 295 | 64 | 118 | 5.85e-11 | 60.1 |
| Msa1085060 | MtrunA17_Chr6g0451041 | 47.917 | 48 | 24 | 1 | 244 | 290 | 18 | 65 | 6.68e-11 | 58.2 |
| Msa1085060 | MtrunA17_Chr5g0409201 | 40.278 | 72 | 42 | 1 | 233 | 303 | 82 | 153 | 7.54e-11 | 59.7 |
| Msa1085060 | MtrunA17_Chr2g0325141 | 33.721 | 86 | 51 | 2 | 213 | 297 | 65 | 145 | 8.01e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1085060 | AT3G55530.1 | 69.707 | 307 | 56 | 5 | 1 | 304 | 1 | 273 | 1.72e-138 | 392 |
| Msa1085060 | AT1G04790.1 | 60.465 | 43 | 17 | 0 | 243 | 285 | 588 | 630 | 1.96e-14 | 73.9 |
| Msa1085060 | AT1G49850.1 | 41.379 | 87 | 38 | 2 | 212 | 285 | 158 | 244 | 2.70e-13 | 68.9 |
| Msa1085060 | AT1G71980.1 | 60.000 | 45 | 17 | 1 | 242 | 285 | 230 | 274 | 3.62e-12 | 67.0 |
| Msa1085060 | AT2G17730.1 | 38.028 | 71 | 43 | 1 | 216 | 285 | 168 | 238 | 3.69e-12 | 65.5 |
| Msa1085060 | AT5G66070.5 | 43.077 | 65 | 33 | 2 | 225 | 285 | 154 | 218 | 3.87e-12 | 65.1 |
| Msa1085060 | AT5G66070.1 | 43.077 | 65 | 33 | 2 | 225 | 285 | 154 | 218 | 3.87e-12 | 65.1 |
| Msa1085060 | AT3G58720.1 | 35.714 | 84 | 48 | 1 | 227 | 304 | 127 | 210 | 5.28e-12 | 65.1 |
| Msa1085060 | AT5G66070.2 | 43.077 | 65 | 33 | 2 | 225 | 285 | 178 | 242 | 5.32e-12 | 65.1 |
| Msa1085060 | AT3G58720.4 | 35.714 | 84 | 48 | 1 | 227 | 304 | 147 | 230 | 6.21e-12 | 65.1 |
| Msa1085060 | AT3G58720.2 | 41.667 | 60 | 35 | 0 | 227 | 286 | 155 | 214 | 1.30e-11 | 64.3 |
| Msa1085060 | AT5G24870.3 | 46.154 | 52 | 28 | 0 | 239 | 290 | 463 | 514 | 2.06e-11 | 64.7 |
| Msa1085060 | AT5G24870.1 | 46.154 | 52 | 28 | 0 | 239 | 290 | 463 | 514 | 2.06e-11 | 64.7 |
| Msa1085060 | AT5G24870.2 | 46.154 | 52 | 28 | 0 | 239 | 290 | 463 | 514 | 2.06e-11 | 64.7 |
| Msa1085060 | AT5G10650.1 | 46.000 | 50 | 27 | 0 | 239 | 288 | 470 | 519 | 2.08e-11 | 64.7 |
| Msa1085060 | AT5G10650.2 | 46.000 | 50 | 27 | 0 | 239 | 288 | 470 | 519 | 2.08e-11 | 64.7 |
| Msa1085060 | AT5G08139.1 | 45.652 | 46 | 25 | 0 | 242 | 287 | 307 | 352 | 2.19e-11 | 64.3 |
| Msa1085060 | AT5G60820.1 | 46.154 | 52 | 28 | 0 | 236 | 287 | 364 | 415 | 2.28e-11 | 64.3 |
| Msa1085060 | AT1G35625.1 | 50.000 | 54 | 25 | 2 | 242 | 294 | 231 | 283 | 2.33e-11 | 63.9 |
| Msa1085060 | AT1G74410.1 | 32.895 | 76 | 34 | 2 | 211 | 285 | 159 | 218 | 2.54e-11 | 62.8 |
| Msa1085060 | AT3G13430.4 | 36.000 | 75 | 48 | 0 | 225 | 299 | 206 | 280 | 2.63e-11 | 63.9 |
| Msa1085060 | AT3G13430.3 | 36.000 | 75 | 48 | 0 | 225 | 299 | 206 | 280 | 2.63e-11 | 63.9 |
| Msa1085060 | AT3G13430.1 | 36.000 | 75 | 48 | 0 | 225 | 299 | 206 | 280 | 2.63e-11 | 63.9 |
| Msa1085060 | AT3G13430.2 | 36.000 | 75 | 48 | 0 | 225 | 299 | 206 | 280 | 2.63e-11 | 63.9 |
| Msa1085060 | AT4G35840.1 | 38.028 | 71 | 43 | 1 | 216 | 285 | 163 | 233 | 2.88e-11 | 62.8 |
| Msa1085060 | AT3G58720.3 | 41.667 | 60 | 35 | 0 | 227 | 286 | 155 | 214 | 3.09e-11 | 63.5 |
| Msa1085060 | AT5G42940.2 | 37.143 | 70 | 38 | 1 | 216 | 285 | 615 | 678 | 3.31e-11 | 64.3 |
| Msa1085060 | AT5G42940.1 | 37.143 | 70 | 38 | 1 | 216 | 285 | 615 | 678 | 3.31e-11 | 64.3 |
| Msa1085060 | AT1G14200.1 | 40.909 | 44 | 26 | 0 | 243 | 286 | 108 | 151 | 6.19e-11 | 60.8 |
| Msa1085060 | AT3G51325.1 | 44.898 | 49 | 25 | 1 | 240 | 286 | 22 | 70 | 6.69e-11 | 58.5 |
| Msa1085060 | AT5G66160.1 | 59.091 | 44 | 17 | 1 | 243 | 285 | 231 | 274 | 7.47e-11 | 62.4 |
| Msa1085060 | AT5G66160.2 | 59.091 | 44 | 17 | 1 | 243 | 285 | 231 | 274 | 7.68e-11 | 62.4 |
Find 103 sgRNAs with CRISPR-Local
Find 321 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAAGAGCTGATATAGAAAA+TGG | 0.205583 | 7_2:+85457358 | Msa1085060:CDS |
| GCAGCAGCCAGTGGCCTTCT+TGG | 0.225465 | 7_2:+85457916 | Msa1085060:CDS |
| GGCTGCTGCTGCATGAGCTT+GGG | 0.225768 | 7_2:-85457902 | None:intergenic |
| GAAGACCTTACCAGAAAATT+TGG | 0.231832 | 7_2:-85457707 | None:intergenic |
| TGGCTGCTGCTGCATGAGCT+TGG | 0.233454 | 7_2:-85457903 | None:intergenic |
| GTCCACAAATACAAGGTTTC+TGG | 0.243519 | 7_2:+85458299 | Msa1085060:CDS |
| TGCAAATTTCGAGCAGGATC+TGG | 0.318026 | 7_2:+85461378 | Msa1085060:CDS |
| TGTTCATTGTATTAAGTCTT+GGG | 0.325632 | 7_2:+85460174 | Msa1085060:CDS |
| GATATAGAAAATGGGTTTCC+AGG | 0.336999 | 7_2:+85457367 | Msa1085060:CDS |
| ATCTGATCGGAAACGGAGTT+TGG | 0.342721 | 7_2:-85456219 | None:intergenic |
| ATCTGATCTTCTTCGCTCTC+TGG | 0.349493 | 7_2:-85456178 | None:intergenic |
| ATCTCTTCCTCAGTCATAGA+AGG | 0.363639 | 7_2:-85458263 | None:intergenic |
| AGTCCCTTGTTGCCGCAGCC+AGG | 0.363766 | 7_2:-85461346 | None:intergenic |
| TTATGAAACTTTAAGAGCTC+TGG | 0.370204 | 7_2:+85458217 | Msa1085060:CDS |
| TATTTGATATTTCAGAATAT+CGG | 0.383826 | 7_2:+85457245 | Msa1085060:intron |
| TGCAAGCCGAGGGCGTCTGC+AGG | 0.384276 | 7_2:+85457981 | Msa1085060:CDS |
| AACTTGAATTAAAACTTCAT+AGG | 0.392308 | 7_2:-85457307 | None:intergenic |
| TTAAGTTTGTACTTGCTGTT+TGG | 0.399298 | 7_2:-85461661 | None:intergenic |
| CCAGAAAATTTGGTGACATC+TGG | 0.401145 | 7_2:-85457697 | None:intergenic |
| TGACAAACTTGGTAATCTAT+AGG | 0.405290 | 7_2:-85461623 | None:intergenic |
| TTTGTTACTTAACTCCCATA+TGG | 0.407086 | 7_2:-85460219 | None:intergenic |
| TATAGATTACCAAGTTTGTC+AGG | 0.415476 | 7_2:+85461625 | Msa1085060:three_prime_UTR |
| ATTCTGTTTGCAGCTCTGGC+TGG | 0.419069 | 7_2:+85457810 | Msa1085060:intron |
| TAGCTTGCCCTGCCTGCATC+AGG | 0.419997 | 7_2:+85460458 | Msa1085060:CDS |
| AGTTCAGTATCATGAATAAC+AGG | 0.423414 | 7_2:-85457670 | None:intergenic |
| GACCACTTGATGTTCCCATA+TGG | 0.429257 | 7_2:+85460204 | Msa1085060:CDS |
| ATGTTCATTGTATTAAGTCT+TGG | 0.432436 | 7_2:+85460173 | Msa1085060:CDS |
| CGCCTCTCAGGTATAAATCC+TGG | 0.433691 | 7_2:-85457385 | None:intergenic |
| TTGCAGCTCTGGCTGGTGCT+TGG | 0.435630 | 7_2:+85457817 | Msa1085060:intron |
| TACCCTGACGTAGGGATTTG+AGG | 0.436821 | 7_2:+85461554 | Msa1085060:three_prime_UTR |
| ACCACTTGATGTTCCCATAT+GGG | 0.439149 | 7_2:+85460205 | Msa1085060:CDS |
| TTGTTACTTAACTCCCATAT+GGG | 0.441119 | 7_2:-85460218 | None:intergenic |
| AACTTTAAGAGCTCTGGATT+CGG | 0.443410 | 7_2:+85458223 | Msa1085060:CDS |
| TTCAGCTGGCACTTCTTGAT+CGG | 0.445031 | 7_2:+85458013 | Msa1085060:CDS |
| CATACCAATGCACGCCTCTC+AGG | 0.446355 | 7_2:-85457397 | None:intergenic |
| ATTCGATTCGATTCGATTCG+AGG | 0.450301 | 7_2:-85456155 | None:intergenic |
| ATTCCTCAAATCCCTACGTC+AGG | 0.450367 | 7_2:-85461557 | None:intergenic |
| TCAGCTGGCACTTCTTGATC+GGG | 0.463787 | 7_2:+85458014 | Msa1085060:CDS |
| ACGCTAGTTGCATTGATCCC+TGG | 0.464059 | 7_2:+85461328 | Msa1085060:CDS |
| GACCAGAAACCTTGTATTTG+TGG | 0.466017 | 7_2:-85458301 | None:intergenic |
| GCAAATTTCGAGCAGGATCT+GGG | 0.475848 | 7_2:+85461379 | Msa1085060:CDS |
| GATCGGGAGTTTGATGATCT+AGG | 0.485183 | 7_2:+85458030 | Msa1085060:CDS |
| GCAGGGTCTCAGACTTCAGC+TGG | 0.489685 | 7_2:+85457999 | Msa1085060:CDS |
| ACATAGCGACCTGACAAACT+TGG | 0.498142 | 7_2:-85461634 | None:intergenic |
| GTCCCTTGTTGCCGCAGCCA+GGG | 0.498993 | 7_2:-85461345 | None:intergenic |
| CAAGAGCTGATATAGAAAAT+GGG | 0.500384 | 7_2:+85457359 | Msa1085060:CDS |
| GGTAAAAGTAAAGCAAACTT+AGG | 0.504877 | 7_2:-85461729 | None:intergenic |
| AGGTTGAAGATCACGAGAAT+CGG | 0.508685 | 7_2:-85456135 | None:intergenic |
| GCTCACTTGCAGTGTATGCT+TGG | 0.508802 | 7_2:+85460407 | Msa1085060:CDS |
| CTTGTAATTACCCTGACGTA+GGG | 0.510822 | 7_2:+85461546 | Msa1085060:three_prime_UTR |
| GAAACAGACCTGATGCAGGC+AGG | 0.511840 | 7_2:-85460466 | None:intergenic |
| TCTTGATGGCTACAATGCTA+AGG | 0.511885 | 7_2:+85457845 | Msa1085060:CDS |
| AAGCTGAATCTGATCGGAAA+CGG | 0.513031 | 7_2:-85456226 | None:intergenic |
| GAAACCTTGTATTTGTGGAC+AGG | 0.524408 | 7_2:-85458296 | None:intergenic |
| CAGGATAATTCAAATGCGGT+TGG | 0.526813 | 7_2:+85460360 | Msa1085060:CDS |
| ATCCCTGGCTGCGGCAACAA+GGG | 0.527296 | 7_2:+85461343 | Msa1085060:CDS |
| CCTGCTCGAAATTTGCAGAC+AGG | 0.527651 | 7_2:-85461372 | None:intergenic |
| GCTCATGCAGCAGCAGCCAG+TGG | 0.529345 | 7_2:+85457907 | Msa1085060:CDS |
| TGAGACCCTGCAGACGCCCT+CGG | 0.529448 | 7_2:-85457987 | None:intergenic |
| TGTGTGGCCAAGAAGGCCAC+TGG | 0.533669 | 7_2:-85457923 | None:intergenic |
| ACATAATGATATTGCGGACA+TGG | 0.537633 | 7_2:+85461416 | Msa1085060:CDS |
| GTTCATTGTATTAAGTCTTG+GGG | 0.540363 | 7_2:+85460175 | Msa1085060:CDS |
| TCGTTTGTGGCAGAAGACAC+AGG | 0.541361 | 7_2:+85460341 | Msa1085060:intron |
| ATCATTTATATAGATTATTG+TGG | 0.542091 | 7_2:+85460148 | Msa1085060:intron |
| TATACCTGAGAGGCGTGCAT+TGG | 0.542114 | 7_2:+85457393 | Msa1085060:CDS |
| CCTGTCTGCAAATTTCGAGC+AGG | 0.542234 | 7_2:+85461372 | Msa1085060:CDS |
| AACGCCTTCCACTTCGGCTG+AGG | 0.544809 | 7_2:+85459821 | Msa1085060:CDS |
| GTGAGTGAGTTGGAATTACT+AGG | 0.546777 | 7_2:-85457523 | None:intergenic |
| GATCCCTGGCTGCGGCAACA+AGG | 0.548660 | 7_2:+85461342 | Msa1085060:CDS |
| TCTTCCTGTCCACAAATACA+AGG | 0.550485 | 7_2:+85458292 | Msa1085060:CDS |
| CAATGAAACAGACCTGATGC+AGG | 0.560277 | 7_2:-85460470 | None:intergenic |
| AAACAGACCTGATGCAGGCA+GGG | 0.562428 | 7_2:-85460465 | None:intergenic |
| GCAAGCCGAGGGCGTCTGCA+GGG | 0.564406 | 7_2:+85457982 | Msa1085060:CDS |
| TACTGCACCTTCTATGACTG+AGG | 0.566852 | 7_2:+85458256 | Msa1085060:CDS |
| TGCTTGGAGCAAGTTAATGT+TGG | 0.567132 | 7_2:+85460423 | Msa1085060:CDS |
| CGATAGCACTTGCAAGCCGA+GGG | 0.567822 | 7_2:+85457971 | Msa1085060:CDS |
| TACGAGAAAAGTGAGTGAGT+TGG | 0.568555 | 7_2:-85457533 | None:intergenic |
| CTGCTCGAAATTTGCAGACA+GGG | 0.568726 | 7_2:-85461371 | None:intergenic |
| TCGATAGCACTTGCAAGCCG+AGG | 0.569823 | 7_2:+85457970 | Msa1085060:CDS |
| AGATGATACCTCAGCCGAAG+TGG | 0.573491 | 7_2:-85459829 | None:intergenic |
| CGGCTTGCAAGTGCTATCGA+TGG | 0.576690 | 7_2:-85457967 | None:intergenic |
| GAACAAAAGCTGAATCTGAT+CGG | 0.586775 | 7_2:-85456232 | None:intergenic |
| TCCCATATGGGAACATCAAG+TGG | 0.587840 | 7_2:-85460206 | None:intergenic |
| AGGCGTTGCTTGTTGCATTG+AGG | 0.592771 | 7_2:-85459805 | None:intergenic |
| TATAAATGTACAACAGTACA+AGG | 0.596806 | 7_2:-85461692 | None:intergenic |
| CTTGCAAGTGCTATCGATGG+AGG | 0.598024 | 7_2:-85457964 | None:intergenic |
| GTTGCATTGATCCCTGGCTG+CGG | 0.599433 | 7_2:+85461334 | Msa1085060:CDS |
| TCTTGTAATTACCCTGACGT+AGG | 0.609259 | 7_2:+85461545 | Msa1085060:three_prime_UTR |
| GATACCTCAGCCGAAGTGGA+AGG | 0.612027 | 7_2:-85459825 | None:intergenic |
| GCAAGTGAGCTCATCATCAG+AGG | 0.615069 | 7_2:-85460394 | None:intergenic |
| TGATATTTCAGAATATCGGA+AGG | 0.617574 | 7_2:+85457249 | Msa1085060:intron |
| TTCCAGGATTTATACCTGAG+AGG | 0.618398 | 7_2:+85457383 | Msa1085060:CDS |
| GTAGTTCTGTGTGGCCAAGA+AGG | 0.622680 | 7_2:-85457930 | None:intergenic |
| CAGTGGACATAATGATATTG+CGG | 0.629961 | 7_2:+85461410 | Msa1085060:CDS |
| TTCCTCAAATCCCTACGTCA+GGG | 0.630184 | 7_2:-85461556 | None:intergenic |
| ACAAGCAACGCCTTCCACTT+CGG | 0.635583 | 7_2:+85459815 | Msa1085060:CDS |
| TAACATCTATAGTTGTTAGA+CGG | 0.639054 | 7_2:-85461588 | None:intergenic |
| TCTTGGTTCGGTAAAATGCA+TGG | 0.662796 | 7_2:-85456061 | None:intergenic |
| GGATCTGGGTGGAATGACAG+TGG | 0.668864 | 7_2:+85461393 | Msa1085060:CDS |
| GACACAGGATAATTCAAATG+CGG | 0.672978 | 7_2:+85460356 | Msa1085060:CDS |
| AATTTCGAGCAGGATCTGGG+TGG | 0.705429 | 7_2:+85461382 | Msa1085060:CDS |
| TATGCAATCGTAGTTCTGTG+TGG | 0.730334 | 7_2:-85457939 | None:intergenic |
| GAGACTTACGGAAATTGACG+AGG | 0.732054 | 7_2:-85456254 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAGCTTTATATATATATTT+TGG | + | chr7_2:85458732-85458751 | Msa1085060:intron | 10.0% |
| !! | ACACATATATATATATATAT+GGG | + | chr7_2:85459289-85459308 | Msa1085060:intron | 10.0% |
| !! | TTACTATATTTACAAATTTA+TGG | + | chr7_2:85459526-85459545 | Msa1085060:intron | 10.0% |
| !! | TTACTATATTTACAAATTTA+TGG | + | chr7_2:85459526-85459545 | Msa1085060:intron | 10.0% |
| !!! | CAGTAATATAATTTTTTTTA+GGG | - | chr7_2:85459748-85459767 | None:intergenic | 10.0% |
| !!! | TCAGTAATATAATTTTTTTT+AGG | - | chr7_2:85459749-85459768 | None:intergenic | 10.0% |
| !! | GTATACTCTATATAATTATT+TGG | + | chr7_2:85457109-85457128 | Msa1085060:intron | 15.0% |
| !! | TATTTGATATTTCAGAATAT+CGG | + | chr7_2:85457245-85457264 | Msa1085060:intron | 15.0% |
| !!! | TATATTTTGGATAATTAACT+CGG | + | chr7_2:85458745-85458764 | Msa1085060:intron | 15.0% |
| !! | TGCTAATAATAAAAGATAAT+GGG | - | chr7_2:85459365-85459384 | None:intergenic | 15.0% |
| !! | ATGCTAATAATAAAAGATAA+TGG | - | chr7_2:85459364-85459383 | None:intergenic | 15.0% |
| !! | CACACATATATATATATATA+TGG | + | chr7_2:85459288-85459307 | Msa1085060:intron | 15.0% |
| !! | ATGCTAATAATAAAAGATAA+TGG | + | chr7_2:85459364-85459383 | Msa1085060:intron | 15.0% |
| !! | TGCTAATAATAAAAGATAAT+GGG | + | chr7_2:85459365-85459384 | Msa1085060:intron | 15.0% |
| !!! | ATGCATGATATATTTTTTTA+TGG | + | chr7_2:85459418-85459437 | Msa1085060:intron | 15.0% |
| !!! | TGCATGATATATTTTTTTAT+GGG | + | chr7_2:85459419-85459438 | Msa1085060:intron | 15.0% |
| !!! | ATGCATGATATATTTTTTTA+TGG | + | chr7_2:85459418-85459437 | Msa1085060:intron | 15.0% |
| !!! | TGCATGATATATTTTTTTAT+GGG | + | chr7_2:85459419-85459438 | Msa1085060:intron | 15.0% |
| !! | ATCATTTATATAGATTATTG+TGG | + | chr7_2:85460148-85460167 | Msa1085060:intron | 15.0% |
| !!! | AACTACAAGTAAAATTTTAT+AGG | - | chr7_2:85460855-85460874 | None:intergenic | 15.0% |
| !! | ACAAGATAAAAACAAATAAA+CGG | - | chr7_2:85461302-85461321 | None:intergenic | 15.0% |
| !!! | GCGATTTTAAGATTTAATTA+GGG | + | chr7_2:85456409-85456428 | Msa1085060:intron | 20.0% |
| !! | AGTTTATTATGAATAATCTG+CGG | + | chr7_2:85456442-85456461 | Msa1085060:intron | 20.0% |
| !!! | TGTTTGATTATGTTAGTTTA+TGG | + | chr7_2:85456807-85456826 | Msa1085060:intron | 20.0% |
| !!! | TTCTGAAATATCAAATAAGA+TGG | - | chr7_2:85457242-85457261 | None:intergenic | 20.0% |
| !! | AACTTGAATTAAAACTTCAT+AGG | - | chr7_2:85457310-85457329 | None:intergenic | 20.0% |
| !! | ATCAGTACAAAATAATACAT+TGG | - | chr7_2:85457468-85457487 | None:intergenic | 20.0% |
| !!! | AAATGATACACATTTTATCA+AGG | + | chr7_2:85457741-85457760 | Msa1085060:intron | 20.0% |
| !! | AAGAAGAAAAAAACTGAATA+AGG | - | chr7_2:85458183-85458202 | None:intergenic | 20.0% |
| !! | AATGTCAAAATCCATTTAAA+GGG | - | chr7_2:85458367-85458386 | None:intergenic | 20.0% |
| !!! | TTTCAATTTGATTTATGACA+TGG | - | chr7_2:85458461-85458480 | None:intergenic | 20.0% |
| !! | AAATTGAAAATTCATATGTG+AGG | + | chr7_2:85458472-85458491 | Msa1085060:intron | 20.0% |
| !! | AATTGAAAATTCATATGTGA+GGG | + | chr7_2:85458473-85458492 | Msa1085060:intron | 20.0% |
| !! | CATATATATATATATATGGG+AGG | + | chr7_2:85459292-85459311 | Msa1085060:intron | 20.0% |
| !! | TATATAGCATTAAAACTAGT+GGG | - | chr7_2:85459333-85459352 | None:intergenic | 20.0% |
| !! | ATATATAGCATTAAAACTAG+TGG | - | chr7_2:85459334-85459353 | None:intergenic | 20.0% |
| !!! | TAAATGGTTTTTTTGTATGA+TGG | + | chr7_2:85460040-85460059 | Msa1085060:intron | 20.0% |
| !! | CATTCAAGAAAATAATAGAA+TGG | - | chr7_2:85460121-85460140 | None:intergenic | 20.0% |
| !!! | TACAATCTTTTCATTTAGAT+TGG | + | chr7_2:85460289-85460308 | Msa1085060:intron | 20.0% |
| !!! | ATTTTACTTGTAGTTGAAAT+TGG | + | chr7_2:85460860-85460879 | Msa1085060:intron | 20.0% |
| !!! | TAAAATGCTTTTCAAAACAA+GGG | - | chr7_2:85460924-85460943 | None:intergenic | 20.0% |
| !!! | TTTTGAAAAGCATTTTACTT+TGG | + | chr7_2:85460927-85460946 | Msa1085060:intron | 20.0% |
| !!! | AATATCTACACAACTTTTTT+GGG | - | chr7_2:85461160-85461179 | None:intergenic | 20.0% |
| !!! | AAATATCTACACAACTTTTT+TGG | - | chr7_2:85461161-85461180 | None:intergenic | 20.0% |
| !!! | TCAATAATGTTGATTTAATG+TGG | - | chr7_2:85461188-85461207 | None:intergenic | 20.0% |
| !! | TCATAATTAAAAATTAGACG+AGG | - | chr7_2:85461450-85461469 | None:intergenic | 20.0% |
| ! | GATGAAATTGAAAATGGAAT+TGG | - | chr7_2:85456309-85456328 | None:intergenic | 25.0% |
| !!! | CGCGATTTTAAGATTTAATT+AGG | + | chr7_2:85456408-85456427 | Msa1085060:intron | 25.0% |
| !!! | ATTTTGAGGAAAATGGTTTA+AGG | + | chr7_2:85456574-85456593 | Msa1085060:intron | 25.0% |
| !!! | TAGTGTTTTTGTTTGATTAG+AGG | + | chr7_2:85456614-85456633 | Msa1085060:intron | 25.0% |
| ! | TATGATACTTGCATAATGAA+TGG | + | chr7_2:85456658-85456677 | Msa1085060:intron | 25.0% |
| ! | ATGATACTTGCATAATGAAT+GGG | + | chr7_2:85456659-85456678 | Msa1085060:intron | 25.0% |
| ! | TTTGTAAGGAAAATGGTTTA+AGG | + | chr7_2:85456764-85456783 | Msa1085060:intron | 25.0% |
| ! | TTAGGGATTAAAATTAGAGT+AGG | + | chr7_2:85456844-85456863 | Msa1085060:intron | 25.0% |
| !!! | AAAAATCTTCCCCTTATTTT+AGG | - | chr7_2:85456893-85456912 | None:intergenic | 25.0% |
| !! | AGAATAACAGAAATGTGTTT+TGG | + | chr7_2:85456972-85456991 | Msa1085060:intron | 25.0% |
| !!! | AGAAATGTGTTTTGGATATT+AGG | + | chr7_2:85456980-85456999 | Msa1085060:intron | 25.0% |
| ! | AAGAATAGTTAAGAAAACGT+TGG | - | chr7_2:85457007-85457026 | None:intergenic | 25.0% |
| !!! | AAGGTTTTAGTTATTGATTC+TGG | + | chr7_2:85457268-85457287 | Msa1085060:five_prime_UTR | 25.0% |
| ! | GAATGTCAAAATCCATTTAA+AGG | - | chr7_2:85458368-85458387 | None:intergenic | 25.0% |
| !! | GTTATTTCGATTAAGAACTT+TGG | + | chr7_2:85458593-85458612 | Msa1085060:intron | 25.0% |
| ! | TCTATATTGAAAGAGAAACA+TGG | + | chr7_2:85458773-85458792 | Msa1085060:intron | 25.0% |
| !! | ATTAGTAGATTAGCCAAAAT+AGG | + | chr7_2:85458924-85458943 | Msa1085060:intron | 25.0% |
| !! | TTTTTATGGGTTTAGATTCA+AGG | + | chr7_2:85459432-85459451 | Msa1085060:intron | 25.0% |
| ! | ATTTACATGCCCTAAAATAA+TGG | + | chr7_2:85459550-85459569 | Msa1085060:intron | 25.0% |
| ! | TTTACATGCCCTAAAATAAT+GGG | + | chr7_2:85459551-85459570 | Msa1085060:intron | 25.0% |
| !!! | CATAACTACCCATTATTTTA+GGG | - | chr7_2:85459562-85459581 | None:intergenic | 25.0% |
| !! | TCATAACTACCCATTATTTT+AGG | - | chr7_2:85459563-85459582 | None:intergenic | 25.0% |
| !! | TTTTTATGGGTTTAGATTCA+AGG | + | chr7_2:85459432-85459451 | Msa1085060:intron | 25.0% |
| ! | TTCAAGGTTATTAATAGTGT+AGG | + | chr7_2:85459448-85459467 | Msa1085060:intron | 25.0% |
| ! | CATGTTATTACTTATTACTG+TGG | + | chr7_2:85459969-85459988 | Msa1085060:intron | 25.0% |
| ! | AAGTGCTTATAATCTGTAAA+TGG | + | chr7_2:85460024-85460043 | Msa1085060:intron | 25.0% |
| ! | ATGTTCATTGTATTAAGTCT+TGG | + | chr7_2:85460173-85460192 | Msa1085060:CDS | 25.0% |
| ! | TGTTCATTGTATTAAGTCTT+GGG | + | chr7_2:85460174-85460193 | Msa1085060:CDS | 25.0% |
| ! | GATTATGTGATAAGAAAATC+TGG | + | chr7_2:85460655-85460674 | Msa1085060:intron | 25.0% |
| !! | GTAAAATGCTTTTCAAAACA+AGG | - | chr7_2:85460925-85460944 | None:intergenic | 25.0% |
| ! | GAACAAAAAAAATAGTGTTC+AGG | - | chr7_2:85460993-85461012 | None:intergenic | 25.0% |
| ! | CTAAGTATATAAAAACCTCA+TGG | + | chr7_2:85461234-85461253 | Msa1085060:intron | 25.0% |
| ! | TAACATCTATAGTTGTTAGA+CGG | - | chr7_2:85461591-85461610 | None:intergenic | 25.0% |
| ! | TATAAATGTACAACAGTACA+AGG | - | chr7_2:85461695-85461714 | None:intergenic | 25.0% |
| GAAATTGAAAATGGAATTGG+TGG | - | chr7_2:85456306-85456325 | None:intergenic | 30.0% | |
| TGAGGAGATGAAATTGAAAA+TGG | - | chr7_2:85456315-85456334 | None:intergenic | 30.0% | |
| GAAAAATGTGAAAACATAGC+AGG | - | chr7_2:85456345-85456364 | None:intergenic | 30.0% | |
| ! | TTGATTTTTGCTGCATTTTG+AGG | + | chr7_2:85456560-85456579 | Msa1085060:intron | 30.0% |
| ATGGTTTAAGGATCACTAAA+TGG | + | chr7_2:85456586-85456605 | Msa1085060:intron | 30.0% | |
| CATACAACATTAACAAATCG+CGG | - | chr7_2:85456642-85456661 | None:intergenic | 30.0% | |
| AACACTTCAATTCCATTTAG+TGG | - | chr7_2:85456791-85456810 | None:intergenic | 30.0% | |
| ! | TATGTTAGTTTATGGCCATA+TGG | + | chr7_2:85456815-85456834 | Msa1085060:intron | 30.0% |
| TGTTACTCATGCCTAAAATA+AGG | + | chr7_2:85456879-85456898 | Msa1085060:intron | 30.0% | |
| GTTACTCATGCCTAAAATAA+GGG | + | chr7_2:85456880-85456899 | Msa1085060:intron | 30.0% | |
| TTACTCATGCCTAAAATAAG+GGG | + | chr7_2:85456881-85456900 | Msa1085060:intron | 30.0% | |
| !! | TCAGCATTGATGAAAATTCA+CGG | - | chr7_2:85456950-85456969 | None:intergenic | 30.0% |
| GATTTCAGATAAGTGATGAT+AGG | + | chr7_2:85457066-85457085 | Msa1085060:intron | 30.0% | |
| TGATATTTCAGAATATCGGA+AGG | + | chr7_2:85457249-85457268 | Msa1085060:intron | 30.0% | |
| CAAGAGCTGATATAGAAAAT+GGG | + | chr7_2:85457359-85457378 | Msa1085060:CDS | 30.0% | |
| TATACAGAGTAAGTTGTCAA+TGG | - | chr7_2:85457638-85457657 | None:intergenic | 30.0% | |
| AGTTCAGTATCATGAATAAC+AGG | - | chr7_2:85457673-85457692 | None:intergenic | 30.0% | |
| ! | TTATGAAACTTTAAGAGCTC+TGG | + | chr7_2:85458217-85458236 | Msa1085060:CDS | 30.0% |
| !! | TGACAGATTACTTACTTTTG+GGG | - | chr7_2:85458326-85458345 | None:intergenic | 30.0% |
| !! | CTGACAGATTACTTACTTTT+GGG | - | chr7_2:85458327-85458346 | None:intergenic | 30.0% |
| ! | TCTGACAGATTACTTACTTT+TGG | - | chr7_2:85458328-85458347 | None:intergenic | 30.0% |
| TGTTATTACCTCCCTTTAAA+TGG | + | chr7_2:85458353-85458372 | Msa1085060:intron | 30.0% | |
| !! | AATAGTGAGTTTCACTTTTC+GGG | - | chr7_2:85458437-85458456 | None:intergenic | 30.0% |
| !! | CAATAGTGAGTTTCACTTTT+CGG | - | chr7_2:85458438-85458457 | None:intergenic | 30.0% |
| TGATATATTGATCGATGACA+TGG | + | chr7_2:85458548-85458567 | Msa1085060:intron | 30.0% | |
| GTAATAATAGGCATCACTAA+AGG | - | chr7_2:85458621-85458640 | None:intergenic | 30.0% | |
| ACACGACATAGAGTAATAAT+AGG | - | chr7_2:85458633-85458652 | None:intergenic | 30.0% | |
| ! | TTTTATCTGGCAATATGAAG+AGG | + | chr7_2:85458658-85458677 | Msa1085060:intron | 30.0% |
| GGTAGTTATAATTTAACAGC+TGG | - | chr7_2:85459035-85459054 | None:intergenic | 30.0% | |
| ATTCACTTGTCTAGACAAAA+TGG | - | chr7_2:85459897-85459916 | None:intergenic | 30.0% | |
| !! | ATAACTTTGCTGATTCTTTG+AGG | + | chr7_2:85459933-85459952 | Msa1085060:intron | 30.0% |
| !! | TAACTTTGCTGATTCTTTGA+GGG | + | chr7_2:85459934-85459953 | Msa1085060:intron | 30.0% |
| GTTCATTGTATTAAGTCTTG+GGG | + | chr7_2:85460175-85460194 | Msa1085060:CDS | 30.0% | |
| ! | TTGTTACTTAACTCCCATAT+GGG | - | chr7_2:85460221-85460240 | None:intergenic | 30.0% |
| ! | TTTGTTACTTAACTCCCATA+TGG | - | chr7_2:85460222-85460241 | None:intergenic | 30.0% |
| ! | TCTTTTCATTTAGATTGGAG+TGG | + | chr7_2:85460294-85460313 | Msa1085060:intron | 30.0% |
| ! | GATTCATTTCTTTTCGTTTG+TGG | + | chr7_2:85460328-85460347 | Msa1085060:intron | 30.0% |
| ATCTAACATAGGGTTTACAT+AGG | + | chr7_2:85460687-85460706 | Msa1085060:intron | 30.0% | |
| TCTAACATAGGGTTTACATA+GGG | + | chr7_2:85460688-85460707 | Msa1085060:intron | 30.0% | |
| CTTGAGTTTACCTATTGAAA+AGG | + | chr7_2:85460965-85460984 | Msa1085060:intron | 30.0% | |
| !!! | CACTATTTTTTTTGTTCCGA+AGG | + | chr7_2:85460996-85461015 | Msa1085060:intron | 30.0% |
| ! | TCAGTTTCTAGATTCTAAAC+GGG | - | chr7_2:85461036-85461055 | None:intergenic | 30.0% |
| TGTAGATATCTGACTTTACA+TGG | + | chr7_2:85461102-85461121 | Msa1085060:intron | 30.0% | |
| CAAGGAAAAAACTAGATTAG+GGG | - | chr7_2:85461137-85461156 | None:intergenic | 30.0% | |
| GCAAGGAAAAAACTAGATTA+GGG | - | chr7_2:85461138-85461157 | None:intergenic | 30.0% | |
| ! | TGACAAACTTGGTAATCTAT+AGG | - | chr7_2:85461626-85461645 | None:intergenic | 30.0% |
| TATAGATTACCAAGTTTGTC+AGG | + | chr7_2:85461625-85461644 | Msa1085060:three_prime_UTR | 30.0% | |
| !! | TTAAGTTTGTACTTGCTGTT+TGG | - | chr7_2:85461664-85461683 | None:intergenic | 30.0% |
| ! | TTTTCGTATGTGTCTTGGTT+CGG | - | chr7_2:85456076-85456095 | None:intergenic | 35.0% |
| ! | CGTATTTTTCGTATGTGTCT+TGG | - | chr7_2:85456081-85456100 | None:intergenic | 35.0% |
| AGACACATACGAAAAATACG+TGG | + | chr7_2:85456081-85456100 | Msa1085060:five_prime_UTR | 35.0% | |
| GAACAAAAGCTGAATCTGAT+CGG | - | chr7_2:85456235-85456254 | None:intergenic | 35.0% | |
| ! | AACATAGCAGGAACATTTTG+AGG | - | chr7_2:85456333-85456352 | None:intergenic | 35.0% |
| ATCGTTTATCATGCTTGAAG+TGG | + | chr7_2:85456522-85456541 | Msa1085060:intron | 35.0% | |
| TTATCATGCTTGAAGTGGTT+TGG | + | chr7_2:85456527-85456546 | Msa1085060:intron | 35.0% | |
| TGCAGCAAAAATCAAAACCT+AGG | - | chr7_2:85456555-85456574 | None:intergenic | 35.0% | |
| !! | TTGCTGCATTTTGAGGAAAA+TGG | + | chr7_2:85456567-85456586 | Msa1085060:intron | 35.0% |
| TCGAAGATTACACAATTGCA+AGG | - | chr7_2:85456720-85456739 | None:intergenic | 35.0% | |
| TGGTGTGTTTGTAAGGAAAA+TGG | + | chr7_2:85456757-85456776 | Msa1085060:intron | 35.0% | |
| ATGGTTTAAGGACCACTAAA+TGG | + | chr7_2:85456776-85456795 | Msa1085060:intron | 35.0% | |
| AATCCCTAACAACTACCATA+TGG | - | chr7_2:85456833-85456852 | None:intergenic | 35.0% | |
| GATGATAGGTTTAGTATGTG+TGG | + | chr7_2:85457080-85457099 | Msa1085060:intron | 35.0% | |
| AATCACAGAGCGGATATAAT+CGG | - | chr7_2:85457162-85457181 | None:intergenic | 35.0% | |
| TCCTCGAAAAACAAAACTCA+TGG | - | chr7_2:85457338-85457357 | None:intergenic | 35.0% | |
| GCAAGAGCTGATATAGAAAA+TGG | + | chr7_2:85457358-85457377 | Msa1085060:CDS | 35.0% | |
| ! | GATATAGAAAATGGGTTTCC+AGG | + | chr7_2:85457367-85457386 | Msa1085060:CDS | 35.0% |
| CATCGAAGAAAACACAGAAA+AGG | - | chr7_2:85457612-85457631 | None:intergenic | 35.0% | |
| !! | TGTCACCAAATTTTCTGGTA+AGG | + | chr7_2:85457702-85457721 | Msa1085060:intron | 35.0% |
| GAAGACCTTACCAGAAAATT+TGG | - | chr7_2:85457710-85457729 | None:intergenic | 35.0% | |
| !! | AACTTTAAGAGCTCTGGATT+CGG | + | chr7_2:85458223-85458242 | Msa1085060:CDS | 35.0% |
| GTCAAAATCCATTTAAAGGG+AGG | - | chr7_2:85458364-85458383 | None:intergenic | 35.0% | |
| !! | ATAGTGAGTTTCACTTTTCG+GGG | - | chr7_2:85458436-85458455 | None:intergenic | 35.0% |
| ATGTGAGGGTAAACAAGTAA+AGG | + | chr7_2:85458487-85458506 | Msa1085060:intron | 35.0% | |
| !!! | ATGGAAATGCTGATTTTCAC+TGG | + | chr7_2:85458567-85458586 | Msa1085060:intron | 35.0% |
| !! | TGTCGTGTAGTCATTTTATC+TGG | + | chr7_2:85458645-85458664 | Msa1085060:intron | 35.0% |
| ! | AGTTATCTTGAAGAGCATGT+TGG | + | chr7_2:85458836-85458855 | Msa1085060:intron | 35.0% |
| AAGCACTTGTTTGACTGTTT+AGG | - | chr7_2:85458902-85458921 | None:intergenic | 35.0% | |
| GGTAGTTATGATTTAACAGC+TGG | + | chr7_2:85459386-85459405 | Msa1085060:intron | 35.0% | |
| GGTAGTTATGATTTAACAGC+TGG | + | chr7_2:85459386-85459405 | Msa1085060:intron | 35.0% | |
| CTTGTCTAGACAAAATGGAA+GGG | - | chr7_2:85459892-85459911 | None:intergenic | 35.0% | |
| ACTTGTCTAGACAAAATGGA+AGG | - | chr7_2:85459893-85459912 | None:intergenic | 35.0% | |
| GACACAGGATAATTCAAATG+CGG | + | chr7_2:85460356-85460375 | Msa1085060:CDS | 35.0% | |
| AGGTAAACTCAAGCTCATAA+TGG | - | chr7_2:85460958-85460977 | None:intergenic | 35.0% | |
| GGAGAAATCATTCATTCCTT+CGG | - | chr7_2:85461015-85461034 | None:intergenic | 35.0% | |
| GGCAAGGAAAAAACTAGATT+AGG | - | chr7_2:85461139-85461158 | None:intergenic | 35.0% | |
| CAGTGGACATAATGATATTG+CGG | + | chr7_2:85461410-85461429 | Msa1085060:CDS | 35.0% | |
| ACATAATGATATTGCGGACA+TGG | + | chr7_2:85461416-85461435 | Msa1085060:CDS | 35.0% | |
| !! | TCTTGGTTCGGTAAAATGCA+TGG | - | chr7_2:85456064-85456083 | None:intergenic | 40.0% |
| AGGTTGAAGATCACGAGAAT+CGG | - | chr7_2:85456138-85456157 | None:intergenic | 40.0% | |
| ! | ATTCGATTCGATTCGATTCG+AGG | - | chr7_2:85456158-85456177 | None:intergenic | 40.0% |
| AAGCTGAATCTGATCGGAAA+CGG | - | chr7_2:85456229-85456248 | None:intergenic | 40.0% | |
| CATTTGGGAATGGAGACTTA+CGG | - | chr7_2:85456269-85456288 | None:intergenic | 40.0% | |
| !! | TGAGAGAAAGCATTTGGGAA+TGG | - | chr7_2:85456279-85456298 | None:intergenic | 40.0% |
| TTGCATAATGAATGGGTGCA+GGG | + | chr7_2:85456666-85456685 | Msa1085060:intron | 40.0% | |
| !! | CGATAATGCTTGAAGCGTTT+TGG | + | chr7_2:85456737-85456756 | Msa1085060:intron | 40.0% |
| !! | AGCGTTTTGGTGTGTTTGTA+AGG | + | chr7_2:85456750-85456769 | Msa1085060:intron | 40.0% |
| ATGGCCATATGGTAGTTGTT+AGG | + | chr7_2:85456826-85456845 | Msa1085060:intron | 40.0% | |
| TGGCCATATGGTAGTTGTTA+GGG | + | chr7_2:85456827-85456846 | Msa1085060:intron | 40.0% | |
| ATCACAGAGCGGATATAATC+GGG | - | chr7_2:85457161-85457180 | None:intergenic | 40.0% | |
| ATTCAACAGGAATCACAGAG+CGG | - | chr7_2:85457172-85457191 | None:intergenic | 40.0% | |
| GCTTGAGGATGAAATTCAAC+AGG | - | chr7_2:85457185-85457204 | None:intergenic | 40.0% | |
| CAACACTAAACACATGCTTG+AGG | - | chr7_2:85457200-85457219 | None:intergenic | 40.0% | |
| !!! | GCCATGAGTTTTGTTTTTCG+AGG | + | chr7_2:85457334-85457353 | Msa1085060:exon | 40.0% |
| TTCCAGGATTTATACCTGAG+AGG | + | chr7_2:85457383-85457402 | Msa1085060:CDS | 40.0% | |
| ! | GTGAGTGAGTTGGAATTACT+AGG | - | chr7_2:85457526-85457545 | None:intergenic | 40.0% |
| TACGAGAAAAGTGAGTGAGT+TGG | - | chr7_2:85457536-85457555 | None:intergenic | 40.0% | |
| !! | TCACTCACTTTTCTCGTAAC+AGG | + | chr7_2:85457538-85457557 | Msa1085060:CDS | 40.0% |
| ! | CCAGAAAATTTGGTGACATC+TGG | - | chr7_2:85457700-85457719 | None:intergenic | 40.0% |
| ! | CCAGATGTCACCAAATTTTC+TGG | + | chr7_2:85457697-85457716 | Msa1085060:CDS | 40.0% |
| ! | TCTTGATGGCTACAATGCTA+AGG | + | chr7_2:85457845-85457864 | Msa1085060:CDS | 40.0% |
| ! | TATGCAATCGTAGTTCTGTG+TGG | - | chr7_2:85457942-85457961 | None:intergenic | 40.0% |
| ATCTCTTCCTCAGTCATAGA+AGG | - | chr7_2:85458266-85458285 | None:intergenic | 40.0% | |
| TCTTCCTGTCCACAAATACA+AGG | + | chr7_2:85458292-85458311 | Msa1085060:CDS | 40.0% | |
| GAAACCTTGTATTTGTGGAC+AGG | - | chr7_2:85458299-85458318 | None:intergenic | 40.0% | |
| GTCCACAAATACAAGGTTTC+TGG | + | chr7_2:85458299-85458318 | Msa1085060:CDS | 40.0% | |
| GACCAGAAACCTTGTATTTG+TGG | - | chr7_2:85458304-85458323 | None:intergenic | 40.0% | |
| ATTAGTGAGTAGTGACTGAC+AGG | + | chr7_2:85458702-85458721 | Msa1085060:intron | 40.0% | |
| ! | TGGCTTATGAACGCCTATTT+TGG | - | chr7_2:85458940-85458959 | None:intergenic | 40.0% |
| ! | ATTCTCTCTGGTGCCAATTT+GGG | + | chr7_2:85459187-85459206 | Msa1085060:intron | 40.0% |
| ATCTATGTGTGTCTGTGTGA+GGG | - | chr7_2:85459502-85459521 | None:intergenic | 40.0% | |
| TATCTATGTGTGTCTGTGTG+AGG | - | chr7_2:85459503-85459522 | None:intergenic | 40.0% | |
| ATCTATGTGTGTCTGTGTGA+GGG | - | chr7_2:85459502-85459521 | None:intergenic | 40.0% | |
| TATCTATGTGTGTCTGTGTG+AGG | - | chr7_2:85459503-85459522 | None:intergenic | 40.0% | |
| ACCACTTGATGTTCCCATAT+GGG | + | chr7_2:85460205-85460224 | Msa1085060:CDS | 40.0% | |
| TTCATTTAGATTGGAGTGGC+AGG | + | chr7_2:85460298-85460317 | Msa1085060:intron | 40.0% | |
| CAGGATAATTCAAATGCGGT+TGG | + | chr7_2:85460360-85460379 | Msa1085060:CDS | 40.0% | |
| TGCTTGGAGCAAGTTAATGT+TGG | + | chr7_2:85460423-85460442 | Msa1085060:CDS | 40.0% | |
| CAGAGATGATTCAGTTGAAC+TGG | - | chr7_2:85460556-85460575 | None:intergenic | 40.0% | |
| ! | GATAAGAAAATCTGGAGCGT+TGG | + | chr7_2:85460663-85460682 | Msa1085060:intron | 40.0% |
| AACATAGGGTTTACATAGGG+TGG | + | chr7_2:85460691-85460710 | Msa1085060:intron | 40.0% | |
| CAAGGGCAATGCTACAAAAA+AGG | - | chr7_2:85460907-85460926 | None:intergenic | 40.0% | |
| ! | TGTTCAGGTGCCTTTTCAAT+AGG | - | chr7_2:85460978-85460997 | None:intergenic | 40.0% |
| GGAAAAAACTAGATTAGGGG+AGG | - | chr7_2:85461134-85461153 | None:intergenic | 40.0% | |
| !!! | CTACACAACTTTTTTGGGCA+AGG | - | chr7_2:85461155-85461174 | None:intergenic | 40.0% |
| ! | TCGACAAAGTATCAACCATG+AGG | - | chr7_2:85461252-85461271 | None:intergenic | 40.0% |
| TCTTGTAATTACCCTGACGT+AGG | + | chr7_2:85461545-85461564 | Msa1085060:three_prime_UTR | 40.0% | |
| CTTGTAATTACCCTGACGTA+GGG | + | chr7_2:85461546-85461565 | Msa1085060:three_prime_UTR | 40.0% | |
| ATCTGATCTTCTTCGCTCTC+TGG | - | chr7_2:85456181-85456200 | None:intergenic | 45.0% | |
| ATCTGATCGGAAACGGAGTT+TGG | - | chr7_2:85456222-85456241 | None:intergenic | 45.0% | |
| GAGACTTACGGAAATTGACG+AGG | - | chr7_2:85456257-85456276 | None:intergenic | 45.0% | |
| !! | GCGTGTGAGAGAAAGCATTT+GGG | - | chr7_2:85456284-85456303 | None:intergenic | 45.0% |
| CTTGCATAATGAATGGGTGC+AGG | + | chr7_2:85456665-85456684 | Msa1085060:intron | 45.0% | |
| GTTCATTCTGTTTGCAGCTC+TGG | + | chr7_2:85457806-85457825 | Msa1085060:intron | 45.0% | |
| !!! | GGTGCTTGGTGTTTTCTTGA+TGG | + | chr7_2:85457831-85457850 | Msa1085060:CDS | 45.0% |
| TTCAGCTGGCACTTCTTGAT+CGG | + | chr7_2:85458013-85458032 | Msa1085060:CDS | 45.0% | |
| ! | GATCGGGAGTTTGATGATCT+AGG | + | chr7_2:85458030-85458049 | Msa1085060:CDS | 45.0% |
| TACTGCACCTTCTATGACTG+AGG | + | chr7_2:85458256-85458275 | Msa1085060:CDS | 45.0% | |
| !! | AGTTTCACTTTTCGGGGATG+GGG | - | chr7_2:85458430-85458449 | None:intergenic | 45.0% |
| !! | GAGTTTCACTTTTCGGGGAT+GGG | - | chr7_2:85458431-85458450 | None:intergenic | 45.0% |
| !! | TGAGTTTCACTTTTCGGGGA+TGG | - | chr7_2:85458432-85458451 | None:intergenic | 45.0% |
| GAGCGAGATTGTGTTTGGAT+TGG | - | chr7_2:85458960-85458979 | None:intergenic | 45.0% | |
| AGAGAGAGCGAGATTGTGTT+TGG | - | chr7_2:85458965-85458984 | None:intergenic | 45.0% | |
| TTGACACACACAACCCACTT+GGG | + | chr7_2:85459103-85459122 | Msa1085060:intron | 45.0% | |
| ! | GATTCTCTCTGGTGCCAATT+TGG | + | chr7_2:85459186-85459205 | Msa1085060:intron | 45.0% |
| GCTAAATAGCCCACCCAAAT+TGG | - | chr7_2:85459203-85459222 | None:intergenic | 45.0% | |
| TCGTGTTGAGCTTGTAGACT+TGG | + | chr7_2:85460087-85460106 | Msa1085060:intron | 45.0% | |
| GACCACTTGATGTTCCCATA+TGG | + | chr7_2:85460204-85460223 | Msa1085060:CDS | 45.0% | |
| TCCCATATGGGAACATCAAG+TGG | - | chr7_2:85460209-85460228 | None:intergenic | 45.0% | |
| CAATGAAACAGACCTGATGC+AGG | - | chr7_2:85460473-85460492 | None:intergenic | 45.0% | |
| !! | GAGCGTTGGCATCTAACATA+GGG | + | chr7_2:85460677-85460696 | Msa1085060:intron | 45.0% |
| CTGCTCGAAATTTGCAGACA+GGG | - | chr7_2:85461374-85461393 | None:intergenic | 45.0% | |
| TGCAAATTTCGAGCAGGATC+TGG | + | chr7_2:85461378-85461397 | Msa1085060:CDS | 45.0% | |
| GCAAATTTCGAGCAGGATCT+GGG | + | chr7_2:85461379-85461398 | Msa1085060:CDS | 45.0% | |
| TTCCTCAAATCCCTACGTCA+GGG | - | chr7_2:85461559-85461578 | None:intergenic | 45.0% | |
| ATTCCTCAAATCCCTACGTC+AGG | - | chr7_2:85461560-85461579 | None:intergenic | 45.0% | |
| ACATAGCGACCTGACAAACT+TGG | - | chr7_2:85461637-85461656 | None:intergenic | 45.0% | |
| !! | GGCGTGTGAGAGAAAGCATT+TGG | - | chr7_2:85456285-85456304 | None:intergenic | 50.0% |
| ! | CTTGAAGTGGTTTGGCTCCT+AGG | + | chr7_2:85456535-85456554 | Msa1085060:intron | 50.0% |
| CGCCTCTCAGGTATAAATCC+TGG | - | chr7_2:85457388-85457407 | None:intergenic | 50.0% | |
| ! | TATACCTGAGAGGCGTGCAT+TGG | + | chr7_2:85457393-85457412 | Msa1085060:CDS | 50.0% |
| ! | ATTCTGTTTGCAGCTCTGGC+TGG | + | chr7_2:85457810-85457829 | Msa1085060:intron | 50.0% |
| ! | GTAGTTCTGTGTGGCCAAGA+AGG | - | chr7_2:85457933-85457952 | None:intergenic | 50.0% |
| CTTGCAAGTGCTATCGATGG+AGG | - | chr7_2:85457967-85457986 | None:intergenic | 50.0% | |
| TCAGCTGGCACTTCTTGATC+GGG | + | chr7_2:85458014-85458033 | Msa1085060:CDS | 50.0% | |
| CTTGACACACACAACCCACT+TGG | + | chr7_2:85459102-85459121 | Msa1085060:intron | 50.0% | |
| !! | GTGGTATTGGCTTGGGTCTT+GGG | + | chr7_2:85459134-85459153 | Msa1085060:intron | 50.0% |
| GAATCGAACCTGAGACCTTG+CGG | - | chr7_2:85459171-85459190 | None:intergenic | 50.0% | |
| GTCTCAGGTTCGATTCTCTC+TGG | + | chr7_2:85459175-85459194 | Msa1085060:intron | 50.0% | |
| ! | TCTCTGGTGCCAATTTGGGT+GGG | + | chr7_2:85459191-85459210 | Msa1085060:intron | 50.0% |
| ! | AGGCGTTGCTTGTTGCATTG+AGG | - | chr7_2:85459808-85459827 | None:intergenic | 50.0% |
| ACAAGCAACGCCTTCCACTT+CGG | + | chr7_2:85459815-85459834 | Msa1085060:CDS | 50.0% | |
| AGATGATACCTCAGCCGAAG+TGG | - | chr7_2:85459832-85459851 | None:intergenic | 50.0% | |
| TACCGCCAGGGATATTACAC+GGG | - | chr7_2:85459999-85460018 | None:intergenic | 50.0% | |
| GTACCGCCAGGGATATTACA+CGG | - | chr7_2:85460000-85460019 | None:intergenic | 50.0% | |
| TGTAATATCCCTGGCGGTAC+AGG | + | chr7_2:85460000-85460019 | Msa1085060:intron | 50.0% | |
| GTAATATCCCTGGCGGTACA+GGG | + | chr7_2:85460001-85460020 | Msa1085060:intron | 50.0% | |
| TCGTTTGTGGCAGAAGACAC+AGG | + | chr7_2:85460341-85460360 | Msa1085060:intron | 50.0% | |
| GCAAGTGAGCTCATCATCAG+AGG | - | chr7_2:85460397-85460416 | None:intergenic | 50.0% | |
| GCTCACTTGCAGTGTATGCT+TGG | + | chr7_2:85460407-85460426 | Msa1085060:CDS | 50.0% | |
| AAACAGACCTGATGCAGGCA+GGG | - | chr7_2:85460468-85460487 | None:intergenic | 50.0% | |
| !! | GGAGCGTTGGCATCTAACAT+AGG | + | chr7_2:85460676-85460695 | Msa1085060:intron | 50.0% |
| ! | ACGCTAGTTGCATTGATCCC+TGG | + | chr7_2:85461328-85461347 | Msa1085060:CDS | 50.0% |
| CCTGCTCGAAATTTGCAGAC+AGG | - | chr7_2:85461375-85461394 | None:intergenic | 50.0% | |
| CCTGTCTGCAAATTTCGAGC+AGG | + | chr7_2:85461372-85461391 | Msa1085060:CDS | 50.0% | |
| AATTTCGAGCAGGATCTGGG+TGG | + | chr7_2:85461382-85461401 | Msa1085060:CDS | 50.0% | |
| TACCCTGACGTAGGGATTTG+AGG | + | chr7_2:85461554-85461573 | Msa1085060:three_prime_UTR | 50.0% | |
| CATACCAATGCACGCCTCTC+AGG | - | chr7_2:85457400-85457419 | None:intergenic | 55.0% | |
| CGGCTTGCAAGTGCTATCGA+TGG | - | chr7_2:85457970-85457989 | None:intergenic | 55.0% | |
| TCGATAGCACTTGCAAGCCG+AGG | + | chr7_2:85457970-85457989 | Msa1085060:CDS | 55.0% | |
| CGATAGCACTTGCAAGCCGA+GGG | + | chr7_2:85457971-85457990 | Msa1085060:CDS | 55.0% | |
| CACACACAACCCACTTGGGT+TGG | + | chr7_2:85459107-85459126 | Msa1085060:intron | 55.0% | |
| !! | TTGGGTTGGCCTGGTGGTAT+TGG | + | chr7_2:85459121-85459140 | Msa1085060:intron | 55.0% |
| !! | TTGGCCTGGTGGTATTGGCT+TGG | + | chr7_2:85459126-85459145 | Msa1085060:intron | 55.0% |
| !! | TGGCCTGGTGGTATTGGCTT+GGG | + | chr7_2:85459127-85459146 | Msa1085060:intron | 55.0% |
| AGACCCAAGCCAATACCACC+AGG | - | chr7_2:85459133-85459152 | None:intergenic | 55.0% | |
| !! | GGTGGTATTGGCTTGGGTCT+TGG | + | chr7_2:85459133-85459152 | Msa1085060:intron | 55.0% |
| ! | CTCTCTGGTGCCAATTTGGG+TGG | + | chr7_2:85459190-85459209 | Msa1085060:intron | 55.0% |
| GTGTCTGTGTGAGGGCAGAT+TGG | - | chr7_2:85459494-85459513 | None:intergenic | 55.0% | |
| GTGTCTGTGTGAGGGCAGAT+TGG | - | chr7_2:85459494-85459513 | None:intergenic | 55.0% | |
| GATACCTCAGCCGAAGTGGA+AGG | - | chr7_2:85459828-85459847 | None:intergenic | 55.0% | |
| GTCTCCCCGTGTAATATCCC+TGG | + | chr7_2:85459991-85460010 | Msa1085060:intron | 55.0% | |
| TCCCCGTGTAATATCCCTGG+CGG | + | chr7_2:85459994-85460013 | Msa1085060:intron | 55.0% | |
| ACCGCCAGGGATATTACACG+GGG | - | chr7_2:85459998-85460017 | None:intergenic | 55.0% | |
| GAAACAGACCTGATGCAGGC+AGG | - | chr7_2:85460469-85460488 | None:intergenic | 55.0% | |
| ! | GTTGCATTGATCCCTGGCTG+CGG | + | chr7_2:85461334-85461353 | Msa1085060:CDS | 55.0% |
| GGATCTGGGTGGAATGACAG+TGG | + | chr7_2:85461393-85461412 | Msa1085060:CDS | 55.0% | |
| ! | TTGCAGCTCTGGCTGGTGCT+TGG | + | chr7_2:85457817-85457836 | Msa1085060:intron | 60.0% |
| GGCTGCTGCTGCATGAGCTT+GGG | - | chr7_2:85457905-85457924 | None:intergenic | 60.0% | |
| TGGCTGCTGCTGCATGAGCT+TGG | - | chr7_2:85457906-85457925 | None:intergenic | 60.0% | |
| TGTGTGGCCAAGAAGGCCAC+TGG | - | chr7_2:85457926-85457945 | None:intergenic | 60.0% | |
| GCAGGGTCTCAGACTTCAGC+TGG | + | chr7_2:85457999-85458018 | Msa1085060:CDS | 60.0% | |
| !! | ACAACCCACTTGGGTTGGCC+TGG | + | chr7_2:85459112-85459131 | Msa1085060:intron | 60.0% |
| ACCACCAGGCCAACCCAAGT+GGG | - | chr7_2:85459119-85459138 | None:intergenic | 60.0% | |
| TACCACCAGGCCAACCCAAG+TGG | - | chr7_2:85459120-85459139 | None:intergenic | 60.0% | |
| TCGAACCTGAGACCTTGCGG+AGG | - | chr7_2:85459168-85459187 | None:intergenic | 60.0% | |
| AACGCCTTCCACTTCGGCTG+AGG | + | chr7_2:85459821-85459840 | Msa1085060:CDS | 60.0% | |
| AGCACTTCCCTGTACCGCCA+GGG | - | chr7_2:85460011-85460030 | None:intergenic | 60.0% | |
| AAGCACTTCCCTGTACCGCC+AGG | - | chr7_2:85460012-85460031 | None:intergenic | 60.0% | |
| ! | TAGCTTGCCCTGCCTGCATC+AGG | + | chr7_2:85460458-85460477 | Msa1085060:CDS | 60.0% |
| ATCCCTGGCTGCGGCAACAA+GGG | + | chr7_2:85461343-85461362 | Msa1085060:CDS | 60.0% | |
| GCTCATGCAGCAGCAGCCAG+TGG | + | chr7_2:85457907-85457926 | Msa1085060:CDS | 65.0% | |
| GCAGCAGCCAGTGGCCTTCT+TGG | + | chr7_2:85457916-85457935 | Msa1085060:CDS | 65.0% | |
| TGAGACCCTGCAGACGCCCT+CGG | - | chr7_2:85457990-85458009 | None:intergenic | 65.0% | |
| !! | ACCCACTTGGGTTGGCCTGG+TGG | + | chr7_2:85459115-85459134 | Msa1085060:intron | 65.0% |
| ! | TGGGAGTGTGCTCCTCCGCA+AGG | + | chr7_2:85459153-85459172 | Msa1085060:intron | 65.0% |
| GTGCTCCTCCGCAAGGTCTC+AGG | + | chr7_2:85459160-85459179 | Msa1085060:intron | 65.0% | |
| GATCCCTGGCTGCGGCAACA+AGG | + | chr7_2:85461342-85461361 | Msa1085060:CDS | 65.0% | |
| GTCCCTTGTTGCCGCAGCCA+GGG | - | chr7_2:85461348-85461367 | None:intergenic | 65.0% | |
| AGTCCCTTGTTGCCGCAGCC+AGG | - | chr7_2:85461349-85461368 | None:intergenic | 65.0% | |
| !! | TGCAAGCCGAGGGCGTCTGC+AGG | + | chr7_2:85457981-85458000 | Msa1085060:CDS | 70.0% |
| !! | GCAAGCCGAGGGCGTCTGCA+GGG | + | chr7_2:85457982-85458001 | Msa1085060:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 85456056 | 85461739 | 85456056 | ID=Msa1085060;Name=Msa1085060 |
| chr7_2 | mRNA | 85456056 | 85461739 | 85456056 | ID=Msa1085060-mRNA-1;Parent=Msa1085060;Name=Msa1085060-mRNA-1;_AED=0.24;_eAED=0.24;_QI=289|0.77|0.9|1|0.88|0.8|10|296|304 |
| chr7_2 | exon | 85456056 | 85456267 | 85456056 | ID=Msa1085060-mRNA-1:exon:23074;Parent=Msa1085060-mRNA-1 |
| chr7_2 | exon | 85457260 | 85457414 | 85457260 | ID=Msa1085060-mRNA-1:exon:23075;Parent=Msa1085060-mRNA-1 |
| chr7_2 | exon | 85457505 | 85457559 | 85457505 | ID=Msa1085060-mRNA-1:exon:23076;Parent=Msa1085060-mRNA-1 |
| chr7_2 | exon | 85457666 | 85457718 | 85457666 | ID=Msa1085060-mRNA-1:exon:23077;Parent=Msa1085060-mRNA-1 |
| chr7_2 | exon | 85457823 | 85458051 | 85457823 | ID=Msa1085060-mRNA-1:exon:23078;Parent=Msa1085060-mRNA-1 |
| chr7_2 | exon | 85458216 | 85458330 | 85458216 | ID=Msa1085060-mRNA-1:exon:23079;Parent=Msa1085060-mRNA-1 |
| chr7_2 | exon | 85459797 | 85459842 | 85459797 | ID=Msa1085060-mRNA-1:exon:23080;Parent=Msa1085060-mRNA-1 |
| chr7_2 | exon | 85460161 | 85460253 | 85460161 | ID=Msa1085060-mRNA-1:exon:23081;Parent=Msa1085060-mRNA-1 |
| chr7_2 | exon | 85460354 | 85460479 | 85460354 | ID=Msa1085060-mRNA-1:exon:23082;Parent=Msa1085060-mRNA-1 |
| chr7_2 | exon | 85461324 | 85461739 | 85461324 | ID=Msa1085060-mRNA-1:exon:23083;Parent=Msa1085060-mRNA-1 |
| chr7_2 | five_prime_UTR | 85456056 | 85456267 | 85456056 | ID=Msa1085060-mRNA-1:five_prime_utr;Parent=Msa1085060-mRNA-1 |
| chr7_2 | five_prime_UTR | 85457260 | 85457336 | 85457260 | ID=Msa1085060-mRNA-1:five_prime_utr;Parent=Msa1085060-mRNA-1 |
| chr7_2 | CDS | 85457337 | 85457414 | 85457337 | ID=Msa1085060-mRNA-1:cds;Parent=Msa1085060-mRNA-1 |
| chr7_2 | CDS | 85457505 | 85457559 | 85457505 | ID=Msa1085060-mRNA-1:cds;Parent=Msa1085060-mRNA-1 |
| chr7_2 | CDS | 85457666 | 85457718 | 85457666 | ID=Msa1085060-mRNA-1:cds;Parent=Msa1085060-mRNA-1 |
| chr7_2 | CDS | 85457823 | 85458051 | 85457823 | ID=Msa1085060-mRNA-1:cds;Parent=Msa1085060-mRNA-1 |
| chr7_2 | CDS | 85458216 | 85458330 | 85458216 | ID=Msa1085060-mRNA-1:cds;Parent=Msa1085060-mRNA-1 |
| chr7_2 | CDS | 85459797 | 85459842 | 85459797 | ID=Msa1085060-mRNA-1:cds;Parent=Msa1085060-mRNA-1 |
| chr7_2 | CDS | 85460161 | 85460253 | 85460161 | ID=Msa1085060-mRNA-1:cds;Parent=Msa1085060-mRNA-1 |
| chr7_2 | CDS | 85460354 | 85460479 | 85460354 | ID=Msa1085060-mRNA-1:cds;Parent=Msa1085060-mRNA-1 |
| chr7_2 | CDS | 85461324 | 85461443 | 85461324 | ID=Msa1085060-mRNA-1:cds;Parent=Msa1085060-mRNA-1 |
| chr7_2 | three_prime_UTR | 85461444 | 85461739 | 85461444 | ID=Msa1085060-mRNA-1:three_prime_utr;Parent=Msa1085060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
