Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0369120 | XP_003600880.1 | 99.487 | 195 | 1 | 0 | 1 | 195 | 1 | 195 | 2.43e-131 | 379 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0369120 | G7JB79 | 99.487 | 195 | 1 | 0 | 1 | 195 | 1 | 195 | 1.16e-131 | 379 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0369120 | Msa0416560 | 0.854553 | 1.140334e-61 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0369120 | MtrunA17_Chr3g0113341 | 99.487 | 195 | 1 | 0 | 1 | 195 | 1 | 195 | 2.23e-135 | 379 |
| Msa0369120 | MtrunA17_Chr2g0332311 | 42.553 | 188 | 87 | 4 | 24 | 195 | 9 | 191 | 2.17e-34 | 129 |
| Msa0369120 | MtrunA17_Chr4g0003831 | 40.741 | 189 | 90 | 4 | 24 | 195 | 10 | 193 | 1.24e-32 | 124 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0369120 | AT2G40095.1 | 60.825 | 194 | 57 | 5 | 14 | 195 | 1 | 187 | 2.45e-71 | 217 |
| Msa0369120 | AT2G40095.2 | 60.825 | 194 | 57 | 5 | 14 | 195 | 1 | 187 | 2.45e-71 | 217 |
| Msa0369120 | AT2G40095.3 | 60.825 | 194 | 57 | 5 | 14 | 195 | 1 | 187 | 7.07e-71 | 216 |
| Msa0369120 | AT3G55880.1 | 60.406 | 197 | 60 | 5 | 14 | 195 | 1 | 194 | 1.74e-64 | 199 |
| Msa0369120 | AT3G55880.4 | 60.406 | 197 | 60 | 5 | 14 | 195 | 1 | 194 | 1.74e-64 | 199 |
| Msa0369120 | AT3G55880.2 | 60.406 | 197 | 60 | 5 | 14 | 195 | 1 | 194 | 2.02e-64 | 199 |
| Msa0369120 | AT3G55880.3 | 60.406 | 197 | 60 | 5 | 14 | 195 | 1 | 194 | 2.02e-64 | 199 |
| Msa0369120 | AT1G80280.1 | 43.158 | 190 | 86 | 4 | 21 | 195 | 9 | 191 | 1.64e-32 | 124 |
| Msa0369120 | AT1G52750.1 | 38.251 | 183 | 98 | 5 | 21 | 195 | 11 | 186 | 1.13e-25 | 105 |
| Msa0369120 | AT1G15490.3 | 41.053 | 190 | 90 | 5 | 21 | 195 | 9 | 191 | 6.39e-24 | 100 |
| Msa0369120 | AT1G15490.1 | 41.053 | 190 | 90 | 5 | 21 | 195 | 9 | 191 | 6.47e-24 | 100 |
Find 72 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGAATTTCCTTTGTCTTC+TGG | 0.228232 | 3_1:-66240402 | Msa0369120:CDS |
| TGATGATGATGATTTATTAT+AGG | 0.247108 | 3_1:+66241925 | None:intergenic |
| GATTGGTGTTATAGCCTTAT+AGG | 0.257692 | 3_1:-66239200 | Msa0369120:three_prime_UTR |
| TATTGATATTAGAACAAAAT+AGG | 0.259206 | 3_1:-66240426 | Msa0369120:intron |
| TTTAAAGCTGTTTATGTGTT+TGG | 0.273584 | 3_1:-66241391 | Msa0369120:CDS |
| TCTCTCTTCTTGTAGAATCT+TGG | 0.303598 | 3_1:+66239572 | None:intergenic |
| CTCTCTTCTTGTAGAATCTT+GGG | 0.319694 | 3_1:+66239573 | None:intergenic |
| AATTAATGGATTGTTGGTTA+TGG | 0.325029 | 3_1:-66239081 | Msa0369120:three_prime_UTR |
| ATTATTCAAAGGAGCTGAAA+TGG | 0.332065 | 3_1:-66241883 | Msa0369120:CDS |
| AATGAGAAGAGAGTGTTGTT+AGG | 0.339636 | 3_1:+66241685 | None:intergenic |
| CAGATTTCAGCTTGCACAAA+TGG | 0.343327 | 3_1:-66239609 | Msa0369120:CDS |
| ATCATCATCATCATGAGAAT+TGG | 0.348456 | 3_1:-66241915 | Msa0369120:exon |
| TAGAGAGAGAAGAAAGCTTT+TGG | 0.358985 | 3_1:-66241269 | Msa0369120:CDS |
| CTCTCTACAACTTGTTCTAT+AGG | 0.360607 | 3_1:+66241285 | None:intergenic |
| ATAGGAAAATAAAGAAATAA+AGG | 0.367369 | 3_1:+66241943 | None:intergenic |
| CATATATACATATACCTATA+AGG | 0.369358 | 3_1:+66239186 | None:intergenic |
| GTTGTTAGGGAAAGAGAAAC+AGG | 0.374990 | 3_1:+66241699 | None:intergenic |
| GCTGTTTATGTGTTTGGAAA+TGG | 0.390941 | 3_1:-66241385 | Msa0369120:CDS |
| TCAGCAATAACCAATAGAAC+CGG | 0.440120 | 3_1:+66241759 | None:intergenic |
| ATGAGAAGAGAGTGTTGTTA+GGG | 0.444090 | 3_1:+66241686 | None:intergenic |
| TTGTTGTGTGATTGCTTACA+AGG | 0.450633 | 3_1:+66241984 | None:intergenic |
| GGAAATGGAAGTGGTTATGT+TGG | 0.452642 | 3_1:-66241370 | Msa0369120:CDS |
| GTGTTCTTGTGCGTTGGCTG+TGG | 0.460083 | 3_1:-66241323 | Msa0369120:CDS |
| GGACTAACATATTAGATTAG+AGG | 0.465856 | 3_1:-66239524 | Msa0369120:intron |
| TTACAAGGTGAAGGGTTAAG+AGG | 0.474730 | 3_1:+66241999 | None:intergenic |
| TCAGGTTTCCTAAGGAATGC+TGG | 0.476645 | 3_1:-66239294 | Msa0369120:intron |
| ATCGTTGTTATACACAAATA+AGG | 0.477435 | 3_1:+66241445 | None:intergenic |
| AGAGAGGAAGGCGCAGGCCA+AGG | 0.482276 | 3_1:+66242042 | None:intergenic |
| AAAGAATACCAGCATTCCTT+AGG | 0.482309 | 3_1:+66239286 | None:intergenic |
| CTACTTACAGAAAATGATGA+AGG | 0.486815 | 3_1:+66241602 | None:intergenic |
| ATCTTGTTTCAGGTTTCCTA+AGG | 0.488123 | 3_1:-66239302 | Msa0369120:intron |
| GGAAGCAAATTATTATTCAA+AGG | 0.489130 | 3_1:-66241894 | Msa0369120:CDS |
| GTTTGTGTGTTCTTGTGCGT+TGG | 0.489131 | 3_1:-66241329 | Msa0369120:CDS |
| TGAAACATAAAATTGTTGAT+TGG | 0.493354 | 3_1:-66239217 | Msa0369120:three_prime_UTR |
| AGTTTGTATCGGTCATATAG+AGG | 0.494311 | 3_1:+66242134 | None:intergenic |
| AATTTCCTTTGTCTTCTGGA+AGG | 0.502054 | 3_1:-66240398 | Msa0369120:intron |
| AGTGTTGAGAGAAGAGCTGA+AGG | 0.503134 | 3_1:+66241726 | None:intergenic |
| AGATTTCAGCTTGCACAAAT+GGG | 0.503541 | 3_1:-66239608 | Msa0369120:CDS |
| TTATTCAAAGGAGCTGAAAT+GGG | 0.504508 | 3_1:-66241882 | Msa0369120:CDS |
| TGTTCTTGTGCGTTGGCTGT+GGG | 0.508786 | 3_1:-66241322 | Msa0369120:CDS |
| CCTCTTGATCGTGAAAGTCT+TGG | 0.511477 | 3_1:+66241469 | None:intergenic |
| TGTATCGGTCATATAGAGGT+TGG | 0.527744 | 3_1:+66242138 | None:intergenic |
| ATAAGATATACACCAATCAA+AGG | 0.537931 | 3_1:+66239127 | None:intergenic |
| TTAAGTCCTCATGTTCATCA+AGG | 0.539933 | 3_1:-66239422 | Msa0369120:three_prime_UTR |
| TAAGATATACACCAATCAAA+GGG | 0.546528 | 3_1:+66239128 | None:intergenic |
| TATGTGTTTGGAAATGGAAG+TGG | 0.547223 | 3_1:-66241379 | Msa0369120:CDS |
| TGTGATTGCTTACAAGGTGA+AGG | 0.548103 | 3_1:+66241990 | None:intergenic |
| AAAGAGAGGGATAGAGAGGA+AGG | 0.548621 | 3_1:+66242030 | None:intergenic |
| CAGCAATAACCAATAGAACC+GGG | 0.564536 | 3_1:+66241760 | None:intergenic |
| AGGGATAGAGAGGAAGGCGC+AGG | 0.568817 | 3_1:+66242036 | None:intergenic |
| AACTAGACTATAATCAGTGG+TGG | 0.570411 | 3_1:+66239258 | None:intergenic |
| GGTGTTTATAGTTTATGTGA+TGG | 0.578444 | 3_1:-66241493 | Msa0369120:CDS |
| GGATCTTATGATTGAAACGA+GGG | 0.584128 | 3_1:+66241623 | None:intergenic |
| TACAAGGTGAAGGGTTAAGA+GGG | 0.584226 | 3_1:+66242000 | None:intergenic |
| ATCTAAAAGAATATTAAGAG+TGG | 0.588910 | 3_1:-66241838 | Msa0369120:CDS |
| TTATGTTTAGAAGTTTGTAT+CGG | 0.592182 | 3_1:+66242123 | None:intergenic |
| TGTAGAATCTTGGGATACCT+CGG | 0.594660 | 3_1:+66239582 | None:intergenic |
| AATGATCAGTCACTCACTGT+GGG | 0.604017 | 3_1:-66239545 | Msa0369120:CDS |
| CCAAGACTTTCACGATCAAG+AGG | 0.609953 | 3_1:-66241469 | Msa0369120:CDS |
| GGCTGTGGGACATGTTGTCG+TGG | 0.612882 | 3_1:-66241308 | Msa0369120:CDS |
| AATGGAAGTGGTTATGTTGG+AGG | 0.614918 | 3_1:-66241367 | Msa0369120:CDS |
| GGCATTCCTTGATGAACATG+AGG | 0.624080 | 3_1:+66239416 | None:intergenic |
| CTTGCACAAATGGGTATCCG+AGG | 0.640579 | 3_1:-66239599 | Msa0369120:CDS |
| GTGATTGCTTACAAGGTGAA+GGG | 0.640826 | 3_1:+66241991 | None:intergenic |
| ATGTTCATCAAGGAATGCCA+CGG | 0.654170 | 3_1:-66239412 | Msa0369120:intron |
| GTAAACTAGACTATAATCAG+TGG | 0.658690 | 3_1:+66239255 | None:intergenic |
| ACTAGACTATAATCAGTGGT+GGG | 0.664012 | 3_1:+66239259 | None:intergenic |
| CAATACCTTCCAGAAGACAA+AGG | 0.670613 | 3_1:+66240393 | None:intergenic |
| AAATGATCAGTCACTCACTG+TGG | 0.673405 | 3_1:-66239546 | Msa0369120:CDS |
| AGCAATAACCAATAGAACCG+GGG | 0.697692 | 3_1:+66241761 | None:intergenic |
| AGGATCTTATGATTGAAACG+AGG | 0.704662 | 3_1:+66241622 | None:intergenic |
| GATCTTATGATTGAAACGAG+GGG | 0.745500 | 3_1:+66241624 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATATATAAAAATTAA+TGG | - | chr3_1:66242122-66242141 | Msa0369120:five_prime_UTR | 0.0% |
| !! | ATATTATAGTATCAATTAAA+AGG | + | chr3_1:66240248-66240267 | None:intergenic | 10.0% |
| !! | ATAGGAAAATAAAGAAATAA+AGG | + | chr3_1:66239277-66239296 | None:intergenic | 15.0% |
| !!! | TTTTATTTCATTTTTGATGT+AGG | - | chr3_1:66239703-66239722 | Msa0369120:intron | 15.0% |
| !! | TTAGTCAAAAATAAACATTA+TGG | - | chr3_1:66240303-66240322 | Msa0369120:intron | 15.0% |
| !! | TATTGATATTAGAACAAAAT+AGG | - | chr3_1:66240791-66240810 | Msa0369120:intron | 15.0% |
| !! | TACAAATTTGGATTAAAAAT+TGG | + | chr3_1:66241105-66241124 | None:intergenic | 15.0% |
| !! | CTTTATCAAAATTACAAATT+TGG | + | chr3_1:66241117-66241136 | None:intergenic | 15.0% |
| !! | ATAATAATTTACAAACAACT+AGG | - | chr3_1:66241295-66241314 | Msa0369120:CDS | 15.0% |
| !! | GATCTTTATAATTATTAAGT+GGG | + | chr3_1:66241484-66241503 | None:intergenic | 15.0% |
| !! | AGATCTTTATAATTATTAAG+TGG | + | chr3_1:66241485-66241504 | None:intergenic | 15.0% |
| !!! | TATAAAAATTAATGGATTGT+TGG | - | chr3_1:66242130-66242149 | Msa0369120:five_prime_UTR | 15.0% |
| !! | TTATGTTTAGAAGTTTGTAT+CGG | + | chr3_1:66239097-66239116 | None:intergenic | 20.0% |
| !!! | TGATGATGATGATTTATTAT+AGG | + | chr3_1:66239295-66239314 | None:intergenic | 20.0% |
| !! | ATCTAAAAGAATATTAAGAG+TGG | - | chr3_1:66239379-66239398 | Msa0369120:intron | 20.0% |
| !! | TTTGAAAAATTTATGTGAGA+AGG | + | chr3_1:66240033-66240052 | None:intergenic | 20.0% |
| !!! | AATTTCATCTTTTAGAATGT+AGG | - | chr3_1:66240608-66240627 | Msa0369120:intron | 20.0% |
| !! | TGTTCTAATATCAATAAGAA+AGG | + | chr3_1:66240787-66240806 | None:intergenic | 20.0% |
| !! | CAAAGCTGAAAAAATTAAAT+AGG | + | chr3_1:66240903-66240922 | None:intergenic | 20.0% |
| !!! | CTATTTAATTTTTTCAGCTT+TGG | - | chr3_1:66240901-66240920 | Msa0369120:intron | 20.0% |
| !! | AATTTGGATTAAAAATTGGA+GGG | + | chr3_1:66241101-66241120 | None:intergenic | 20.0% |
| !! | AAATTTGGATTAAAAATTGG+AGG | + | chr3_1:66241102-66241121 | None:intergenic | 20.0% |
| !!! | ATTTTGATAAAATCAAGACT+TGG | - | chr3_1:66241162-66241181 | Msa0369120:intron | 20.0% |
| !! | TATTATGTATAGTCAAAATG+TGG | + | chr3_1:66241278-66241297 | None:intergenic | 20.0% |
| !! | TGTAGATAAACATATAAATG+TGG | + | chr3_1:66241537-66241556 | None:intergenic | 20.0% |
| !!! | AAGATATCAAAAGTATAACA+TGG | + | chr3_1:66241586-66241605 | None:intergenic | 20.0% |
| !! | AGGAATATATATTAGATTAG+AGG | - | chr3_1:66241713-66241732 | Msa0369120:CDS | 20.0% |
| !!! | ATCAACAATTTTATGTTTCA+TGG | + | chr3_1:66242000-66242019 | None:intergenic | 20.0% |
| !! | TGAAACATAAAATTGTTGAT+TGG | - | chr3_1:66242000-66242019 | Msa0369120:five_prime_UTR | 20.0% |
| !! | CATATATACATATACCTATA+AGG | + | chr3_1:66242034-66242053 | None:intergenic | 20.0% |
| ! | GGAAGCAAATTATTATTCAA+AGG | - | chr3_1:66239323-66239342 | Msa0369120:intron | 25.0% |
| !! | TTAATTTTCAATGACCCTTT+TGG | - | chr3_1:66239661-66239680 | Msa0369120:intron | 25.0% |
| ! | CCTTCAATTAAAATCCAAAA+GGG | + | chr3_1:66239678-66239697 | None:intergenic | 25.0% |
| !!! | CCTTTTGGATTTTAATTGAA+GGG | - | chr3_1:66239676-66239695 | Msa0369120:intron | 25.0% |
| ! | ATCGTTGTTATACACAAATA+AGG | + | chr3_1:66239775-66239794 | None:intergenic | 25.0% |
| !! | TTTAAAGCTGTTTATGTGTT+TGG | - | chr3_1:66239826-66239845 | Msa0369120:intron | 25.0% |
| !! | CATTGATATTTTCAGCATTT+TGG | - | chr3_1:66240274-66240293 | Msa0369120:intron | 25.0% |
| !!! | AACTAATGGGAATTTTTTTG+AGG | - | chr3_1:66240704-66240723 | Msa0369120:intron | 25.0% |
| !! | TTTTAAATGGTACTTACGAT+AGG | + | chr3_1:66240743-66240762 | None:intergenic | 25.0% |
| !! | GTAAGTACCATTTAAAATCA+AGG | - | chr3_1:66240746-66240765 | Msa0369120:intron | 25.0% |
| !! | GAAGTTTCCTTGATTTTAAA+TGG | + | chr3_1:66240756-66240775 | None:intergenic | 25.0% |
| !! | TTTTGAATACAGCATATATG+AGG | - | chr3_1:66240944-66240963 | Msa0369120:intron | 25.0% |
| ! | GGGTATAAATGTATAATACA+TGG | - | chr3_1:66240985-66241004 | Msa0369120:intron | 25.0% |
| ! | ACTAGTATATGAATATGATG+TGG | + | chr3_1:66241031-66241050 | None:intergenic | 25.0% |
| ! | ATTTGGAAGAGTAATTCAAT+GGG | + | chr3_1:66241070-66241089 | None:intergenic | 25.0% |
| ! | TATTTGGAAGAGTAATTCAA+TGG | + | chr3_1:66241071-66241090 | None:intergenic | 25.0% |
| !! | GTCTTGATTTTATCAAAATC+AGG | + | chr3_1:66241161-66241180 | None:intergenic | 25.0% |
| !!! | TATTTTTTGCCTTAAGAGAA+TGG | - | chr3_1:66241385-66241404 | Msa0369120:CDS | 25.0% |
| ! | TATTATTAATTGTTGCCAGT+GGG | + | chr3_1:66241454-66241473 | None:intergenic | 25.0% |
| !! | AAAGAGTAGCAATTAGATTT+TGG | + | chr3_1:66241891-66241910 | None:intergenic | 25.0% |
| !!! | CATTTTATTTTCCCTTTGAT+TGG | - | chr3_1:66242078-66242097 | Msa0369120:five_prime_UTR | 25.0% |
| ! | TAAGATATACACCAATCAAA+GGG | + | chr3_1:66242092-66242111 | None:intergenic | 25.0% |
| ! | ATAAGATATACACCAATCAA+AGG | + | chr3_1:66242093-66242112 | None:intergenic | 25.0% |
| !!! | AATTAATGGATTGTTGGTTA+TGG | - | chr3_1:66242136-66242155 | Msa0369120:five_prime_UTR | 25.0% |
| ATCATCATCATCATGAGAAT+TGG | - | chr3_1:66239302-66239321 | Msa0369120:intron | 30.0% | |
| ATTATTCAAAGGAGCTGAAA+TGG | - | chr3_1:66239334-66239353 | Msa0369120:intron | 30.0% | |
| TTATTCAAAGGAGCTGAAAT+GGG | - | chr3_1:66239335-66239354 | Msa0369120:intron | 30.0% | |
| CTACTTACAGAAAATGATGA+AGG | + | chr3_1:66239618-66239637 | None:intergenic | 30.0% | |
| !!! | CCCTTTTGGATTTTAATTGA+AGG | - | chr3_1:66239675-66239694 | Msa0369120:intron | 30.0% |
| CCCTTCAATTAAAATCCAAA+AGG | + | chr3_1:66239679-66239698 | None:intergenic | 30.0% | |
| GGTGTTTATAGTTTATGTGA+TGG | - | chr3_1:66239724-66239743 | Msa0369120:intron | 30.0% | |
| TATCAATTAAAAGGTTCACG+CGG | + | chr3_1:66240239-66240258 | None:intergenic | 30.0% | |
| !!! | GGAATTTTTTTGAGGTAACA+AGG | - | chr3_1:66240712-66240731 | Msa0369120:intron | 30.0% |
| ATGTATAATACATGGCCATA+AGG | - | chr3_1:66240993-66241012 | Msa0369120:intron | 30.0% | |
| TGTATAATACATGGCCATAA+GGG | - | chr3_1:66240994-66241013 | Msa0369120:intron | 30.0% | |
| TTCAAAGAATATGTGCAAGT+GGG | - | chr3_1:66241232-66241251 | Msa0369120:intron | 30.0% | |
| CTATTATTAATTGTTGCCAG+TGG | + | chr3_1:66241455-66241474 | None:intergenic | 30.0% | |
| CACTGGCAACAATTAATAAT+AGG | - | chr3_1:66241453-66241472 | Msa0369120:CDS | 30.0% | |
| GGACTAACATATTAGATTAG+AGG | - | chr3_1:66241693-66241712 | Msa0369120:CDS | 30.0% | |
| ! | CTCTTTCTTAATCTTGTTTC+AGG | - | chr3_1:66241905-66241924 | Msa0369120:CDS | 30.0% |
| GTAAACTAGACTATAATCAG+TGG | + | chr3_1:66241965-66241984 | None:intergenic | 30.0% | |
| ! | AGTTTGTATCGGTCATATAG+AGG | + | chr3_1:66239086-66239105 | None:intergenic | 35.0% |
| ! | TAGTCAATTTTGTTGCACCT+TGG | - | chr3_1:66239158-66239177 | Msa0369120:three_prime_UTR | 35.0% |
| TTGTTGTGTGATTGCTTACA+AGG | + | chr3_1:66239236-66239255 | None:intergenic | 35.0% | |
| TCAGCAATAACCAATAGAAC+CGG | + | chr3_1:66239461-66239480 | None:intergenic | 35.0% | |
| !! | ATGAGAAGAGAGTGTTGTTA+GGG | + | chr3_1:66239534-66239553 | None:intergenic | 35.0% |
| !! | AATGAGAAGAGAGTGTTGTT+AGG | + | chr3_1:66239535-66239554 | None:intergenic | 35.0% |
| GATCTTATGATTGAAACGAG+GGG | + | chr3_1:66239596-66239615 | None:intergenic | 35.0% | |
| GGATCTTATGATTGAAACGA+GGG | + | chr3_1:66239597-66239616 | None:intergenic | 35.0% | |
| AGGATCTTATGATTGAAACG+AGG | + | chr3_1:66239598-66239617 | None:intergenic | 35.0% | |
| GCTGTTTATGTGTTTGGAAA+TGG | - | chr3_1:66239832-66239851 | Msa0369120:intron | 35.0% | |
| TATGTGTTTGGAAATGGAAG+TGG | - | chr3_1:66239838-66239857 | Msa0369120:intron | 35.0% | |
| ! | CTCTCTACAACTTGTTCTAT+AGG | + | chr3_1:66239935-66239954 | None:intergenic | 35.0% |
| ! | TAGAGAGAGAAGAAAGCTTT+TGG | - | chr3_1:66239948-66239967 | Msa0369120:intron | 35.0% |
| !! | TGGTTGGTAAATGGATTGAA+GGG | + | chr3_1:66240006-66240025 | None:intergenic | 35.0% |
| AATTTATGTGAGAAGGCAAG+TGG | + | chr3_1:66240026-66240045 | None:intergenic | 35.0% | |
| CGTAAATTTGTGTGCAAATG+TGG | - | chr3_1:66240202-66240221 | Msa0369120:intron | 35.0% | |
| TAAGCAAACTGGAAACTACT+TGG | + | chr3_1:66240652-66240671 | None:intergenic | 35.0% | |
| ! | TTCCAGTTTGCTTAATGACT+TGG | - | chr3_1:66240658-66240677 | Msa0369120:intron | 35.0% |
| ! | TTGCTTAATGACTTGGAGTA+TGG | - | chr3_1:66240665-66240684 | Msa0369120:intron | 35.0% |
| CTTTCACGATAGGAACTAAT+GGG | - | chr3_1:66240691-66240710 | Msa0369120:intron | 35.0% | |
| AAATGGTACTTACGATAGGT+GGG | + | chr3_1:66240739-66240758 | None:intergenic | 35.0% | |
| TAAATGGTACTTACGATAGG+TGG | + | chr3_1:66240740-66240759 | None:intergenic | 35.0% | |
| GTTGAATTTCCTTTGTCTTC+TGG | - | chr3_1:66240815-66240834 | Msa0369120:intron | 35.0% | |
| AATTTCCTTTGTCTTCTGGA+AGG | - | chr3_1:66240819-66240838 | Msa0369120:intron | 35.0% | |
| ! | ACTTTGATGACAATTCCACT+TGG | - | chr3_1:66240852-66240871 | Msa0369120:intron | 35.0% |
| TGAATACAGCATATATGAGG+TGG | - | chr3_1:66240947-66240966 | Msa0369120:intron | 35.0% | |
| ATATGAGGTGGTTGTTAAGT+TGG | - | chr3_1:66240959-66240978 | Msa0369120:intron | 35.0% | |
| TATGAGGTGGTTGTTAAGTT+GGG | - | chr3_1:66240960-66240979 | Msa0369120:intron | 35.0% | |
| GTATAATACATGGCCATAAG+GGG | - | chr3_1:66240995-66241014 | Msa0369120:intron | 35.0% | |
| GTTCAAAGAATATGTGCAAG+TGG | - | chr3_1:66241231-66241250 | Msa0369120:intron | 35.0% | |
| CAAAATGTGGTCACCAATTT+AGG | + | chr3_1:66241265-66241284 | None:intergenic | 35.0% | |
| CAATATTGGCCATTCTCTTA+AGG | + | chr3_1:66241397-66241416 | None:intergenic | 35.0% | |
| ATGTGGCATGAAAAGAACAT+GGG | + | chr3_1:66241520-66241539 | None:intergenic | 35.0% | |
| AATGTGGCATGAAAAGAACA+TGG | + | chr3_1:66241521-66241540 | None:intergenic | 35.0% | |
| AGATTTCAGCTTGCACAAAT+GGG | - | chr3_1:66241609-66241628 | Msa0369120:intron | 35.0% | |
| CTCTCTTCTTGTAGAATCTT+GGG | + | chr3_1:66241647-66241666 | None:intergenic | 35.0% | |
| TCTCTCTTCTTGTAGAATCT+TGG | + | chr3_1:66241648-66241667 | None:intergenic | 35.0% | |
| TTAAGTCCTCATGTTCATCA+AGG | - | chr3_1:66241795-66241814 | Msa0369120:CDS | 35.0% | |
| CTCTCAAAAGATAATTACCG+TGG | + | chr3_1:66241825-66241844 | None:intergenic | 35.0% | |
| !! | ATCTTGTTTCAGGTTTCCTA+AGG | - | chr3_1:66241915-66241934 | Msa0369120:exon | 35.0% |
| AAAGAATACCAGCATTCCTT+AGG | + | chr3_1:66241934-66241953 | None:intergenic | 35.0% | |
| ACTAGACTATAATCAGTGGT+GGG | + | chr3_1:66241961-66241980 | None:intergenic | 35.0% | |
| AACTAGACTATAATCAGTGG+TGG | + | chr3_1:66241962-66241981 | None:intergenic | 35.0% | |
| !! | GATTGGTGTTATAGCCTTAT+AGG | - | chr3_1:66242017-66242036 | Msa0369120:five_prime_UTR | 35.0% |
| ! | TGTATCGGTCATATAGAGGT+TGG | + | chr3_1:66239082-66239101 | None:intergenic | 40.0% |
| AGAAAAAGAGAGGGATAGAG+AGG | + | chr3_1:66239194-66239213 | None:intergenic | 40.0% | |
| AGAGGGAGAAGAAAAAGAGA+GGG | + | chr3_1:66239203-66239222 | None:intergenic | 40.0% | |
| AAGAGGGAGAAGAAAAAGAG+AGG | + | chr3_1:66239204-66239223 | None:intergenic | 40.0% | |
| TACAAGGTGAAGGGTTAAGA+GGG | + | chr3_1:66239220-66239239 | None:intergenic | 40.0% | |
| TTACAAGGTGAAGGGTTAAG+AGG | + | chr3_1:66239221-66239240 | None:intergenic | 40.0% | |
| GTGATTGCTTACAAGGTGAA+GGG | + | chr3_1:66239229-66239248 | None:intergenic | 40.0% | |
| TGTGATTGCTTACAAGGTGA+AGG | + | chr3_1:66239230-66239249 | None:intergenic | 40.0% | |
| ! | ACTTCTTCTATTTTCTGCCC+CGG | - | chr3_1:66239439-66239458 | Msa0369120:three_prime_UTR | 40.0% |
| AGCAATAACCAATAGAACCG+GGG | + | chr3_1:66239459-66239478 | None:intergenic | 40.0% | |
| CAGCAATAACCAATAGAACC+GGG | + | chr3_1:66239460-66239479 | None:intergenic | 40.0% | |
| GTTGTTAGGGAAAGAGAAAC+AGG | + | chr3_1:66239521-66239540 | None:intergenic | 40.0% | |
| GGAAATGGAAGTGGTTATGT+TGG | - | chr3_1:66239847-66239866 | Msa0369120:intron | 40.0% | |
| AATGGAAGTGGTTATGTTGG+AGG | - | chr3_1:66239850-66239869 | Msa0369120:intron | 40.0% | |
| !! | GTGGTTGGTAAATGGATTGA+AGG | + | chr3_1:66240007-66240026 | None:intergenic | 40.0% |
| CTCCAAGTCATTAAGCAAAC+TGG | + | chr3_1:66240663-66240682 | None:intergenic | 40.0% | |
| ! | CTTAATGACTTGGAGTATGG+TGG | - | chr3_1:66240668-66240687 | Msa0369120:intron | 40.0% |
| GCTTTCACGATAGGAACTAA+TGG | - | chr3_1:66240690-66240709 | Msa0369120:intron | 40.0% | |
| CAATACCTTCCAGAAGACAA+AGG | + | chr3_1:66240827-66240846 | None:intergenic | 40.0% | |
| ! | CTTTGTCTTCTGGAAGGTAT+TGG | - | chr3_1:66240825-66240844 | Msa0369120:intron | 40.0% |
| TTTGCTTTCAAGCATCCAAG+TGG | + | chr3_1:66240870-66240889 | None:intergenic | 40.0% | |
| TGGAATCCAATATCCCCTTA+TGG | + | chr3_1:66241011-66241030 | None:intergenic | 40.0% | |
| ATTGGAGGGTTGAGACTATT+TGG | + | chr3_1:66241087-66241106 | None:intergenic | 40.0% | |
| TTATGCCACATGCGAAGATA+TGG | - | chr3_1:66241328-66241347 | Msa0369120:CDS | 40.0% | |
| TAACACCATATCTTCGCATG+TGG | + | chr3_1:66241336-66241355 | None:intergenic | 40.0% | |
| CCAATATTGCCAACGCAATT+GGG | - | chr3_1:66241408-66241427 | Msa0369120:CDS | 40.0% | |
| CAGATTTCAGCTTGCACAAA+TGG | - | chr3_1:66241608-66241627 | Msa0369120:intron | 40.0% | |
| TGTAGAATCTTGGGATACCT+CGG | + | chr3_1:66241638-66241657 | None:intergenic | 40.0% | |
| AAATGATCAGTCACTCACTG+TGG | - | chr3_1:66241671-66241690 | Msa0369120:CDS | 40.0% | |
| AATGATCAGTCACTCACTGT+GGG | - | chr3_1:66241672-66241691 | Msa0369120:CDS | 40.0% | |
| ATGTTCATCAAGGAATGCCA+CGG | - | chr3_1:66241805-66241824 | Msa0369120:CDS | 40.0% | |
| AAAGAGAGGGATAGAGAGGA+AGG | + | chr3_1:66239190-66239209 | None:intergenic | 45.0% | |
| ! | ATTTTCTGCCCCGGTTCTAT+TGG | - | chr3_1:66239448-66239467 | Msa0369120:three_prime_UTR | 45.0% |
| ! | AGTGTTGAGAGAAGAGCTGA+AGG | + | chr3_1:66239494-66239513 | None:intergenic | 45.0% |
| CCTCTTGATCGTGAAAGTCT+TGG | + | chr3_1:66239751-66239770 | None:intergenic | 45.0% | |
| CCAAGACTTTCACGATCAAG+AGG | - | chr3_1:66239748-66239767 | Msa0369120:intron | 45.0% | |
| GTTTGTGTGTTCTTGTGCGT+TGG | - | chr3_1:66239888-66239907 | Msa0369120:intron | 45.0% | |
| !! | GAAGGCAAGTGGTTGGTAAA+TGG | + | chr3_1:66240015-66240034 | None:intergenic | 45.0% |
| TATGTGAGAAGGCAAGTGGT+TGG | + | chr3_1:66240022-66240041 | None:intergenic | 45.0% | |
| AGTATGGTGGCTTTCACGAT+AGG | - | chr3_1:66240681-66240700 | Msa0369120:intron | 45.0% | |
| !! | AGGTGGTTGTTAAGTTGGGT+AGG | - | chr3_1:66240964-66240983 | Msa0369120:intron | 45.0% |
| !! | GGTGGTTGTTAAGTTGGGTA+GGG | - | chr3_1:66240965-66240984 | Msa0369120:intron | 45.0% |
| ACATGGCCATAAGGGGATAT+TGG | - | chr3_1:66241002-66241021 | Msa0369120:intron | 45.0% | |
| AGTGGGAACACGTCCTAAAT+TGG | - | chr3_1:66241249-66241268 | Msa0369120:CDS | 45.0% | |
| GCCAATATTGCCAACGCAAT+TGG | - | chr3_1:66241407-66241426 | Msa0369120:CDS | 45.0% | |
| ! | CCCAATTGCGTTGGCAATAT+TGG | + | chr3_1:66241411-66241430 | None:intergenic | 45.0% |
| GGCATTCCTTGATGAACATG+AGG | + | chr3_1:66241804-66241823 | None:intergenic | 45.0% | |
| TCAGGTTTCCTAAGGAATGC+TGG | - | chr3_1:66241923-66241942 | Msa0369120:exon | 45.0% | |
| !! | TGTTCTTGTGCGTTGGCTGT+GGG | - | chr3_1:66239895-66239914 | Msa0369120:intron | 50.0% |
| CTTGCACAAATGGGTATCCG+AGG | - | chr3_1:66241618-66241637 | Msa0369120:CDS | 50.0% | |
| !! | GTGTTCTTGTGCGTTGGCTG+TGG | - | chr3_1:66239894-66239913 | Msa0369120:intron | 55.0% |
| TTGCAGGGTCCCAATTGCGT+TGG | + | chr3_1:66241420-66241439 | None:intergenic | 55.0% | |
| GCAATTGGGACCCTGCAAGT+TGG | - | chr3_1:66241422-66241441 | Msa0369120:CDS | 55.0% | |
| ! | ATTGGGACCCTGCAAGTTGG+AGG | - | chr3_1:66241425-66241444 | Msa0369120:CDS | 55.0% |
| ! | AGGGATAGAGAGGAAGGCGC+AGG | + | chr3_1:66239184-66239203 | None:intergenic | 60.0% |
| GGCTGTGGGACATGTTGTCG+TGG | - | chr3_1:66239909-66239928 | Msa0369120:intron | 60.0% | |
| TGGGCAGCCTCCAACTTGCA+GGG | + | chr3_1:66241435-66241454 | None:intergenic | 60.0% | |
| ! | AGAGAGGAAGGCGCAGGCCA+AGG | + | chr3_1:66239178-66239197 | None:intergenic | 65.0% |
| GTGGGCAGCCTCCAACTTGC+AGG | + | chr3_1:66241436-66241455 | None:intergenic | 65.0% | |
| ! | GCAAGTTGGAGGCTGCCCAC+TGG | - | chr3_1:66241436-66241455 | Msa0369120:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 66239079 | 66242160 | 66239079 | ID=Msa0369120;Name=Msa0369120 |
| chr3_1 | mRNA | 66239079 | 66242160 | 66239079 | ID=Msa0369120-mRNA-1;Parent=Msa0369120;Name=Msa0369120-mRNA-1;_AED=0.07;_eAED=0.07;_QI=235|0.6|0.83|0.83|0.6|0.66|6|333|239 |
| chr3_1 | exon | 66239079 | 66239312 | 66239079 | ID=Msa0369120-mRNA-1:exon:13405;Parent=Msa0369120-mRNA-1 |
| chr3_1 | exon | 66239413 | 66239504 | 66239413 | ID=Msa0369120-mRNA-1:exon:13404;Parent=Msa0369120-mRNA-1 |
| chr3_1 | exon | 66239525 | 66239628 | 66239525 | ID=Msa0369120-mRNA-1:exon:13403;Parent=Msa0369120-mRNA-1 |
| chr3_1 | exon | 66240399 | 66240436 | 66240399 | ID=Msa0369120-mRNA-1:exon:13402;Parent=Msa0369120-mRNA-1 |
| chr3_1 | exon | 66241246 | 66241514 | 66241246 | ID=Msa0369120-mRNA-1:exon:13401;Parent=Msa0369120-mRNA-1 |
| chr3_1 | exon | 66241610 | 66242160 | 66241610 | ID=Msa0369120-mRNA-1:exon:13400;Parent=Msa0369120-mRNA-1 |
| chr3_1 | five_prime_UTR | 66241926 | 66242160 | 66241926 | ID=Msa0369120-mRNA-1:five_prime_utr;Parent=Msa0369120-mRNA-1 |
| chr3_1 | CDS | 66241610 | 66241925 | 66241610 | ID=Msa0369120-mRNA-1:cds;Parent=Msa0369120-mRNA-1 |
| chr3_1 | CDS | 66241246 | 66241514 | 66241246 | ID=Msa0369120-mRNA-1:cds;Parent=Msa0369120-mRNA-1 |
| chr3_1 | CDS | 66240399 | 66240436 | 66240399 | ID=Msa0369120-mRNA-1:cds;Parent=Msa0369120-mRNA-1 |
| chr3_1 | CDS | 66239532 | 66239628 | 66239532 | ID=Msa0369120-mRNA-1:cds;Parent=Msa0369120-mRNA-1 |
| chr3_1 | three_prime_UTR | 66239525 | 66239531 | 66239525 | ID=Msa0369120-mRNA-1:three_prime_utr;Parent=Msa0369120-mRNA-1 |
| chr3_1 | three_prime_UTR | 66239413 | 66239504 | 66239413 | ID=Msa0369120-mRNA-1:three_prime_utr;Parent=Msa0369120-mRNA-1 |
| chr3_1 | three_prime_UTR | 66239079 | 66239312 | 66239079 | ID=Msa0369120-mRNA-1:three_prime_utr;Parent=Msa0369120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
