Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0416560 | XP_003600880.1 | 99.074 | 216 | 1 | 1 | 1 | 215 | 1 | 216 | 6.47e-147 | 417 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0416560 | G7JB79 | 99.074 | 216 | 1 | 1 | 1 | 215 | 1 | 216 | 3.09e-147 | 417 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0369120 | Msa0416560 | 0.854553 | 1.140334e-61 | -8.615850e-47 |
| Msa0416560 | Msa0508800 | 0.819257 | 1.277379e-52 | -8.615850e-47 |
| Msa0416560 | Msa0570460 | 0.800323 | 1.520922e-48 | -8.615850e-47 |
| Msa0416560 | Msa0759610 | 0.810561 | 1.084096e-50 | -8.615850e-47 |
| Msa0416560 | Msa0967530 | 0.839559 | 1.473846e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0416560 | MtrunA17_Chr3g0113341 | 99.074 | 216 | 1 | 1 | 1 | 215 | 1 | 216 | 5.95e-151 | 417 |
| Msa0416560 | MtrunA17_Chr2g0332311 | 41.000 | 200 | 98 | 3 | 24 | 207 | 9 | 204 | 1.29e-37 | 137 |
| Msa0416560 | MtrunA17_Chr4g0003831 | 39.604 | 202 | 101 | 3 | 24 | 208 | 10 | 207 | 2.43e-37 | 137 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0416560 | AT2G40095.1 | 61.574 | 216 | 62 | 6 | 14 | 215 | 1 | 209 | 2.61e-83 | 246 |
| Msa0416560 | AT2G40095.2 | 61.574 | 216 | 62 | 6 | 14 | 215 | 1 | 209 | 2.61e-83 | 246 |
| Msa0416560 | AT3G55880.2 | 61.009 | 218 | 66 | 5 | 14 | 215 | 1 | 215 | 1.38e-77 | 232 |
| Msa0416560 | AT3G55880.3 | 61.009 | 218 | 66 | 5 | 14 | 215 | 1 | 215 | 1.38e-77 | 232 |
| Msa0416560 | AT2G40095.3 | 60.714 | 196 | 57 | 5 | 14 | 196 | 1 | 189 | 5.57e-72 | 218 |
| Msa0416560 | AT3G55880.1 | 60.000 | 200 | 61 | 5 | 14 | 197 | 1 | 197 | 6.81e-66 | 202 |
| Msa0416560 | AT3G55880.4 | 60.000 | 200 | 61 | 5 | 14 | 197 | 1 | 197 | 6.81e-66 | 202 |
| Msa0416560 | AT1G80280.1 | 41.262 | 206 | 95 | 5 | 21 | 207 | 9 | 207 | 3.34e-35 | 131 |
| Msa0416560 | AT1G52750.1 | 36.816 | 201 | 109 | 5 | 21 | 211 | 11 | 203 | 8.70e-30 | 116 |
| Msa0416560 | AT1G15490.1 | 39.320 | 206 | 99 | 5 | 21 | 207 | 9 | 207 | 2.56e-26 | 106 |
| Msa0416560 | AT1G15490.3 | 39.320 | 206 | 99 | 5 | 21 | 207 | 9 | 207 | 2.62e-26 | 106 |
Find 66 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTGTATATATAAAAGTTAA+TGG | 0.221418 | 3_2:-63463099 | Msa0416560:three_prime_UTR |
| AAATTGTTGATTGGTGTTAT+AGG | 0.235723 | 3_2:-63463329 | Msa0416560:three_prime_UTR |
| TGATGATGATGATTTATTAT+AGG | 0.247108 | 3_2:+63466411 | None:intergenic |
| CTCTCTTCTTGAAGAATCTT+AGG | 0.256779 | 3_2:+63463711 | None:intergenic |
| ATTGCTTACAAGGTGAATTA+AGG | 0.273486 | 3_2:+63466480 | None:intergenic |
| TTTAAAGCTGTTTATGTGTT+TGG | 0.273584 | 3_2:-63465879 | Msa0416560:CDS |
| TTGATTGGTGTTATAGGTAT+AGG | 0.310602 | 3_2:-63463323 | Msa0416560:three_prime_UTR |
| ATTATTCAAAGGAGCTGAAA+TGG | 0.332065 | 3_2:-63466369 | Msa0416560:CDS |
| CAGATTTCAGCTTGCACAAA+TGG | 0.343327 | 3_2:-63463747 | Msa0416560:CDS |
| ATCATCATCATCATGAGAAT+TGG | 0.348456 | 3_2:-63466401 | Msa0416560:exon |
| GTTGTTAAGGAAAGAGAAAC+AGG | 0.354501 | 3_2:+63466185 | None:intergenic |
| TAGAGAGAGAAGAAAGCTTT+TGG | 0.358985 | 3_2:-63465760 | Msa0416560:CDS |
| CTCTCTACAACTTGTTCTAT+AGG | 0.360607 | 3_2:+63465776 | None:intergenic |
| ATAGGAAAATAAAGAAATAA+AGG | 0.367369 | 3_2:+63466429 | None:intergenic |
| ATGAGAAGAGAGTGTTGTTA+AGG | 0.381925 | 3_2:+63466172 | None:intergenic |
| GCTGTTTATGTGTTTGGAAA+TGG | 0.390941 | 3_2:-63465873 | Msa0416560:CDS |
| TATAAAAGTTAATGGATTGT+TGG | 0.395144 | 3_2:-63463091 | Msa0416560:three_prime_UTR |
| GGACTAACATATTAGATTAG+AGG | 0.406011 | 3_2:-63463663 | Msa0416560:three_prime_UTR |
| ACTAGACTATAATCAGTGTT+GGG | 0.409865 | 3_2:+63463381 | None:intergenic |
| TCAGCAATAACCAATAGAAC+CGG | 0.440120 | 3_2:+63466245 | None:intergenic |
| TTGTTGTGTGATTGCTTACA+AGG | 0.450633 | 3_2:+63466470 | None:intergenic |
| GTGTTCTTGTGCGTTGGCTG+TGG | 0.460083 | 3_2:-63465814 | Msa0416560:CDS |
| TTTGGAAATGGAAGCTATGT+TGG | 0.473678 | 3_2:-63465861 | Msa0416560:CDS |
| TCAGGTTTCCTAAGGAATGC+TGG | 0.476645 | 3_2:-63463416 | Msa0416560:intron |
| ATCGTTGTTATACACAAATA+AGG | 0.477435 | 3_2:+63465933 | None:intergenic |
| AAAGAATACCAGCATTCCTT+AGG | 0.482309 | 3_2:+63463408 | None:intergenic |
| CTACTTACAGAAAATGATGA+AGG | 0.486815 | 3_2:+63466088 | None:intergenic |
| AAAGAGAGAGATAGAGAGGA+AGG | 0.486958 | 3_2:+63466514 | None:intergenic |
| GGAAGCAAATTATTATTCAA+AGG | 0.489130 | 3_2:-63466380 | Msa0416560:CDS |
| GTTTGTGTGTTCTTGTGCGT+TGG | 0.489131 | 3_2:-63465820 | Msa0416560:CDS |
| AGTTTGTATCGGTCATATAG+AGG | 0.494311 | 3_2:+63466618 | None:intergenic |
| AGTGTTGAGAGAAGAGCTGA+AGG | 0.503134 | 3_2:+63466212 | None:intergenic |
| AGATTTCAGCTTGCACAAAT+GGG | 0.503541 | 3_2:-63463746 | Msa0416560:CDS |
| AACTAGACTATAATCAGTGT+TGG | 0.504349 | 3_2:+63463380 | None:intergenic |
| TTATTCAAAGGAGCTGAAAT+GGG | 0.504508 | 3_2:-63466368 | Msa0416560:CDS |
| ATCTTGTTTCAGGTTTCCTA+AGG | 0.506308 | 3_2:-63463424 | Msa0416560:intron |
| TGTTCTTGTGCGTTGGCTGT+GGG | 0.508786 | 3_2:-63465813 | Msa0416560:CDS |
| TGAGACATAAAATTGTTGAT+TGG | 0.509232 | 3_2:-63463338 | Msa0416560:three_prime_UTR |
| CCTCTTGATCGTGAAAGTCT+TGG | 0.511477 | 3_2:+63465957 | None:intergenic |
| TGTATCGGTCATATAGAGGT+TGG | 0.527744 | 3_2:+63466622 | None:intergenic |
| AGAGAGGAAGGTGCAGGCCA+AGG | 0.537363 | 3_2:+63466526 | None:intergenic |
| ATAAGATATACACCAATCAA+AGG | 0.537931 | 3_2:+63463129 | None:intergenic |
| TTAAGTCCTCATGTTCATCA+AGG | 0.539933 | 3_2:-63463542 | Msa0416560:three_prime_UTR |
| TAAGATATACACCAATCAAA+GGG | 0.546528 | 3_2:+63463130 | None:intergenic |
| AGAGATAGAGAGGAAGGTGC+AGG | 0.547250 | 3_2:+63466520 | None:intergenic |
| CAGCAATAACCAATAGAACC+GGG | 0.564536 | 3_2:+63466246 | None:intergenic |
| GCTTACAAGGTGAATTAAGG+AGG | 0.570383 | 3_2:+63466483 | None:intergenic |
| CTAGACTATAATCAGTGTTG+GGG | 0.572305 | 3_2:+63463382 | None:intergenic |
| GGTGTTTATAGTTTATGTGA+TGG | 0.578444 | 3_2:-63465981 | Msa0416560:CDS |
| GGAAATGGAAGCTATGTTGG+AGG | 0.579482 | 3_2:-63465858 | Msa0416560:CDS |
| TGAAGAATCTTAGGATACCT+CGG | 0.581840 | 3_2:+63463720 | None:intergenic |
| TGGAAGCTATGTTGGAGGAT+CGG | 0.583381 | 3_2:-63465853 | Msa0416560:CDS |
| GGATCTTATGATTGAAACGA+GGG | 0.584128 | 3_2:+63466109 | None:intergenic |
| ATCTAAAAGAATATTAAGAG+TGG | 0.588910 | 3_2:-63466324 | Msa0416560:CDS |
| TTATGTTTAGAAGTTTGTAT+CGG | 0.592182 | 3_2:+63466607 | None:intergenic |
| CCAAGACTTTCACGATCAAG+AGG | 0.609953 | 3_2:-63465957 | Msa0416560:CDS |
| GGCTGTGGGACATGTTGTCG+TGG | 0.612882 | 3_2:-63465799 | Msa0416560:CDS |
| CTTACAAGGTGAATTAAGGA+GGG | 0.614189 | 3_2:+63466484 | None:intergenic |
| GGCATTCCTTGATGAACATG+AGG | 0.624080 | 3_2:+63463536 | None:intergenic |
| CTTGCACAAATGGGTATCCG+AGG | 0.640579 | 3_2:-63463737 | Msa0416560:CDS |
| ATGTTCATCAAGGAATGCCA+CGG | 0.654170 | 3_2:-63463532 | Msa0416560:intron |
| AAATGATCAGTCACTCACTG+TGG | 0.692270 | 3_2:-63463684 | Msa0416560:exon |
| AGCAATAACCAATAGAACCG+GGG | 0.697692 | 3_2:+63466247 | None:intergenic |
| AGGATCTTATGATTGAAACG+AGG | 0.704662 | 3_2:+63466108 | None:intergenic |
| TAGACTATAATCAGTGTTGG+GGG | 0.711570 | 3_2:+63463383 | None:intergenic |
| GATCTTATGATTGAAACGAG+GGG | 0.745500 | 3_2:+63466110 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTTTTTGATGT+AGG | - | chr3_2:63463703-63463722 | Msa0416560:CDS | 10.0% |
| !!! | TACTATTTGTTTTTTTTTTT+TGG | - | chr3_2:63464133-63464152 | Msa0416560:intron | 10.0% |
| !! | ATATTATAGTATCAATTAAA+AGG | + | chr3_2:63464282-63464301 | None:intergenic | 10.0% |
| !!! | ATCTTTTATAATTATTAAGT+GGG | + | chr3_2:63465834-63465853 | None:intergenic | 10.0% |
| !! | ATAGGAAAATAAAGAAATAA+AGG | + | chr3_2:63463279-63463298 | None:intergenic | 15.0% |
| !!! | TCTTTCAAAAAAAAACATTT+TGG | - | chr3_2:63464339-63464358 | Msa0416560:intron | 15.0% |
| !! | TTAGTCAAAAATAAACATTA+TGG | - | chr3_2:63464368-63464387 | Msa0416560:intron | 15.0% |
| !! | AATAAGATATTAAATGACTA+AGG | + | chr3_2:63464518-63464537 | None:intergenic | 15.0% |
| !! | TATTGATATTAGAACAAAAT+AGG | - | chr3_2:63465138-63465157 | Msa0416560:intron | 15.0% |
| !! | TACAAATTTGGATTAAAAAT+TGG | + | chr3_2:63465452-63465471 | None:intergenic | 15.0% |
| !! | CTTTATCAAAATTACAAATT+TGG | + | chr3_2:63465464-63465483 | None:intergenic | 15.0% |
| !! | ATAATAATTTACAAACATCT+AGG | - | chr3_2:63465645-63465664 | Msa0416560:intron | 15.0% |
| !!! | GATCTTTTATAATTATTAAG+TGG | + | chr3_2:63465835-63465854 | None:intergenic | 15.0% |
| !! | TTTAGGTAAACATATAAATA+TGG | + | chr3_2:63465888-63465907 | None:intergenic | 15.0% |
| !!! | AAAATATCAAAAGTATAACA+TGG | + | chr3_2:63465937-63465956 | None:intergenic | 15.0% |
| !! | TGTGTATATATAAAAGTTAA+TGG | - | chr3_2:63466606-63466625 | Msa0416560:five_prime_UTR | 15.0% |
| !! | TTATGTTTAGAAGTTTGTAT+CGG | + | chr3_2:63463101-63463120 | None:intergenic | 20.0% |
| !!! | TGATGATGATGATTTATTAT+AGG | + | chr3_2:63463297-63463316 | None:intergenic | 20.0% |
| !! | ATCTAAAAGAATATTAAGAG+TGG | - | chr3_2:63463381-63463400 | Msa0416560:three_prime_UTR | 20.0% |
| !! | TTTGAAAAATTTATGTGAGA+AGG | + | chr3_2:63464030-63464049 | None:intergenic | 20.0% |
| !!! | CATTGATATTTTCAACATTT+TGG | - | chr3_2:63464308-63464327 | Msa0416560:intron | 20.0% |
| !! | TTAAAAAGTGACACTTAAAA+AGG | + | chr3_2:63464421-63464440 | None:intergenic | 20.0% |
| !!! | AATTTCATCTTTTAGAATGT+AGG | - | chr3_2:63464954-63464973 | Msa0416560:intron | 20.0% |
| !! | TGTTCTAATATCAATAAGAA+AGG | + | chr3_2:63465134-63465153 | None:intergenic | 20.0% |
| !! | CAAAGCTGAAAAAATTAAAT+AGG | + | chr3_2:63465250-63465269 | None:intergenic | 20.0% |
| !!! | CTATTTAATTTTTTCAGCTT+TGG | - | chr3_2:63465248-63465267 | Msa0416560:intron | 20.0% |
| !! | AATTTGGATTAAAAATTGGA+GGG | + | chr3_2:63465448-63465467 | None:intergenic | 20.0% |
| !! | AAATTTGGATTAAAAATTGG+AGG | + | chr3_2:63465449-63465468 | None:intergenic | 20.0% |
| !!! | ATTTTGATAAAATCAAGACT+TGG | - | chr3_2:63465509-63465528 | Msa0416560:intron | 20.0% |
| !! | TATTATGTATAGTCAAAATG+TGG | + | chr3_2:63465628-63465647 | None:intergenic | 20.0% |
| !! | TATTATTAATTGTTGCTAGT+GGG | + | chr3_2:63465804-63465823 | None:intergenic | 20.0% |
| !!! | TAGTCACATTCAATATTTTT+AGG | + | chr3_2:63465905-63465924 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTTTGGTTACAAG+AGG | - | chr3_2:63466077-63466096 | Msa0416560:intron | 20.0% |
| !!! | AAAAAGTAGCAATTAGATTT+TGG | + | chr3_2:63466259-63466278 | None:intergenic | 20.0% |
| !!! | TATAAAAGTTAATGGATTGT+TGG | - | chr3_2:63466614-63466633 | Msa0416560:five_prime_UTR | 20.0% |
| ! | GGAAGCAAATTATTATTCAA+AGG | - | chr3_2:63463325-63463344 | Msa0416560:three_prime_UTR | 25.0% |
| !! | TTAATTTTCAATGACCCTTT+TGG | - | chr3_2:63463663-63463682 | Msa0416560:three_prime_UTR | 25.0% |
| ! | CCTTTAATCAAAATCCAAAA+GGG | + | chr3_2:63463680-63463699 | None:intergenic | 25.0% |
| !!! | CCTTTTGGATTTTGATTAAA+GGG | - | chr3_2:63463678-63463697 | Msa0416560:three_prime_UTR | 25.0% |
| ! | ATCGTTGTTATACACAAATA+AGG | + | chr3_2:63463775-63463794 | None:intergenic | 25.0% |
| !! | TTTAAAGCTGTTTATGTGTT+TGG | - | chr3_2:63463826-63463845 | Msa0416560:intron | 25.0% |
| ! | GTAACATTTATTAAGTGTCT+TGG | + | chr3_2:63464457-63464476 | None:intergenic | 25.0% |
| ! | TTATCCTTAGTTATCTATTG+TGG | + | chr3_2:63464557-63464576 | None:intergenic | 25.0% |
| ! | TTTGAAAGTGACAGTTAAAT+AGG | - | chr3_2:63464611-63464630 | Msa0416560:intron | 25.0% |
| !! | TTTTAAATGGTACTTACGAT+AGG | + | chr3_2:63465090-63465109 | None:intergenic | 25.0% |
| !! | GTAAGTACCATTTAAAATCA+AGG | - | chr3_2:63465093-63465112 | Msa0416560:intron | 25.0% |
| !! | GAAGTTTCCTTGATTTTAAA+TGG | + | chr3_2:63465103-63465122 | None:intergenic | 25.0% |
| !! | TTTTGAATACAGCATATATG+AGG | - | chr3_2:63465291-63465310 | Msa0416560:intron | 25.0% |
| ! | GGGTATAAATGTATAATACA+TGG | - | chr3_2:63465332-63465351 | Msa0416560:intron | 25.0% |
| ! | ACTAGTATATGAATATGATG+TGG | + | chr3_2:63465378-63465397 | None:intergenic | 25.0% |
| ! | ATTTGGAAGAGTAATTCAAT+GGG | + | chr3_2:63465417-63465436 | None:intergenic | 25.0% |
| ! | TATTTGGAAGAGTAATTCAA+TGG | + | chr3_2:63465418-63465437 | None:intergenic | 25.0% |
| !! | GTCTTGATTTTATCAAAATC+AGG | + | chr3_2:63465508-63465527 | None:intergenic | 25.0% |
| !!! | TATTTTTTGCCTTAAGAGAA+TGG | - | chr3_2:63465735-63465754 | Msa0416560:intron | 25.0% |
| ! | CTATTATTAATTGTTGCTAG+TGG | + | chr3_2:63465805-63465824 | None:intergenic | 25.0% |
| ! | CACTAGCAACAATTAATAAT+AGG | - | chr3_2:63465803-63465822 | Msa0416560:CDS | 25.0% |
| !!! | TACTTTTTGAATCTTGTTTC+AGG | - | chr3_2:63466271-63466290 | Msa0416560:CDS | 25.0% |
| !! | ATCAACAATTTTATGTCTCA+TGG | + | chr3_2:63466367-63466386 | None:intergenic | 25.0% |
| ! | TGAGACATAAAATTGTTGAT+TGG | - | chr3_2:63466367-63466386 | Msa0416560:CDS | 25.0% |
| !!! | AAATTGTTGATTGGTGTTAT+AGG | - | chr3_2:63466376-63466395 | Msa0416560:CDS | 25.0% |
| !! | ATCAACAATTTTATGTCTCA+TGG | + | chr3_2:63466367-63466386 | None:intergenic | 25.0% |
| ! | TGAGACATAAAATTGTTGAT+TGG | - | chr3_2:63466367-63466386 | Msa0416560:CDS | 25.0% |
| !!! | AAATTGTTGATTGGTGTTAT+AGG | - | chr3_2:63466376-63466395 | Msa0416560:CDS | 25.0% |
| !!! | ACTTTTATTTTCCCTTTGAT+TGG | - | chr3_2:63466564-63466583 | Msa0416560:five_prime_UTR | 25.0% |
| ! | TAAGATATACACCAATCAAA+GGG | + | chr3_2:63466578-63466597 | None:intergenic | 25.0% |
| ! | ATAAGATATACACCAATCAA+AGG | + | chr3_2:63466579-63466598 | None:intergenic | 25.0% |
| ATTGCTTACAAGGTGAATTA+AGG | + | chr3_2:63463228-63463247 | None:intergenic | 30.0% | |
| ATCATCATCATCATGAGAAT+TGG | - | chr3_2:63463304-63463323 | Msa0416560:intron | 30.0% | |
| ATTATTCAAAGGAGCTGAAA+TGG | - | chr3_2:63463336-63463355 | Msa0416560:three_prime_UTR | 30.0% | |
| TTATTCAAAGGAGCTGAAAT+GGG | - | chr3_2:63463337-63463356 | Msa0416560:three_prime_UTR | 30.0% | |
| CTACTTACAGAAAATGATGA+AGG | + | chr3_2:63463620-63463639 | None:intergenic | 30.0% | |
| !!! | CCCTTTTGGATTTTGATTAA+AGG | - | chr3_2:63463677-63463696 | Msa0416560:three_prime_UTR | 30.0% |
| CCCTTTAATCAAAATCCAAA+AGG | + | chr3_2:63463681-63463700 | None:intergenic | 30.0% | |
| GGTGTTTATAGTTTATGTGA+TGG | - | chr3_2:63463724-63463743 | Msa0416560:CDS | 30.0% | |
| TATCAATTAAAAGGTTCACG+CGG | + | chr3_2:63464273-63464292 | None:intergenic | 30.0% | |
| TCCAATAGTGACACTTAAAA+AGG | - | chr3_2:63464647-63464666 | Msa0416560:intron | 30.0% | |
| !!! | TCCTTTTTAAGTGTCACTAT+TGG | + | chr3_2:63464651-63464670 | None:intergenic | 30.0% |
| TAGTGACACTTAAAAAGGAA+CGG | - | chr3_2:63464652-63464671 | Msa0416560:intron | 30.0% | |
| ! | AACTAATGGGAATTTTTGTG+AGG | - | chr3_2:63465051-63465070 | Msa0416560:intron | 30.0% |
| ATGTATAATACATGGCCATA+AGG | - | chr3_2:63465340-63465359 | Msa0416560:intron | 30.0% | |
| TGTATAATACATGGCCATAA+GGG | - | chr3_2:63465341-63465360 | Msa0416560:intron | 30.0% | |
| ATATGGCATGAAAAGAACAT+GGG | + | chr3_2:63465871-63465890 | None:intergenic | 30.0% | |
| AATATGGCATGAAAAGAACA+TGG | + | chr3_2:63465872-63465891 | None:intergenic | 30.0% | |
| GGACTAACATATTAGATTAG+AGG | - | chr3_2:63466042-63466061 | Msa0416560:intron | 30.0% | |
| ACTAGACTATAATCAGTGTT+GGG | + | chr3_2:63466327-63466346 | None:intergenic | 30.0% | |
| AACTAGACTATAATCAGTGT+TGG | + | chr3_2:63466328-63466347 | None:intergenic | 30.0% | |
| ! | AATTTTATGTCTCATGGTAG+CGG | + | chr3_2:63466361-63466380 | None:intergenic | 30.0% |
| !! | TTGATTGGTGTTATAGGTAT+AGG | - | chr3_2:63466382-63466401 | Msa0416560:CDS | 30.0% |
| !! | GGTATATATAGCTTTAGCTT+TGG | - | chr3_2:63466403-63466422 | Msa0416560:exon | 30.0% |
| ! | AATTTTATGTCTCATGGTAG+CGG | + | chr3_2:63466361-63466380 | None:intergenic | 30.0% |
| !! | TTGATTGGTGTTATAGGTAT+AGG | - | chr3_2:63466382-63466401 | Msa0416560:CDS | 30.0% |
| !! | GGTATATATAGCTTTAGCTT+TGG | - | chr3_2:63466403-63466422 | Msa0416560:exon | 30.0% |
| ! | AGTTTGTATCGGTCATATAG+AGG | + | chr3_2:63463090-63463109 | None:intergenic | 35.0% |
| ! | TAGTCAATTTTGTTGCACCT+TGG | - | chr3_2:63463162-63463181 | Msa0416560:three_prime_UTR | 35.0% |
| AGAAAAAGAGAGAGATAGAG+AGG | + | chr3_2:63463198-63463217 | None:intergenic | 35.0% | |
| CTTACAAGGTGAATTAAGGA+GGG | + | chr3_2:63463224-63463243 | None:intergenic | 35.0% | |
| TTGTTGTGTGATTGCTTACA+AGG | + | chr3_2:63463238-63463257 | None:intergenic | 35.0% | |
| TCAGCAATAACCAATAGAAC+CGG | + | chr3_2:63463463-63463482 | None:intergenic | 35.0% | |
| GTTGTTAAGGAAAGAGAAAC+AGG | + | chr3_2:63463523-63463542 | None:intergenic | 35.0% | |
| !! | ATGAGAAGAGAGTGTTGTTA+AGG | + | chr3_2:63463536-63463555 | None:intergenic | 35.0% |
| GATCTTATGATTGAAACGAG+GGG | + | chr3_2:63463598-63463617 | None:intergenic | 35.0% | |
| GGATCTTATGATTGAAACGA+GGG | + | chr3_2:63463599-63463618 | None:intergenic | 35.0% | |
| AGGATCTTATGATTGAAACG+AGG | + | chr3_2:63463600-63463619 | None:intergenic | 35.0% | |
| GCTGTTTATGTGTTTGGAAA+TGG | - | chr3_2:63463832-63463851 | Msa0416560:intron | 35.0% | |
| TTTGGAAATGGAAGCTATGT+TGG | - | chr3_2:63463844-63463863 | Msa0416560:intron | 35.0% | |
| ! | CTCTCTACAACTTGTTCTAT+AGG | + | chr3_2:63463932-63463951 | None:intergenic | 35.0% |
| ! | TAGAGAGAGAAGAAAGCTTT+TGG | - | chr3_2:63463945-63463964 | Msa0416560:intron | 35.0% |
| !! | TGGTTGGTAAATGGATTGAA+GGG | + | chr3_2:63464003-63464022 | None:intergenic | 35.0% |
| AATTTATGTGAGAAGGCAAG+TGG | + | chr3_2:63464023-63464042 | None:intergenic | 35.0% | |
| CGTAAATTTGTGTGCAAATG+TGG | - | chr3_2:63464229-63464248 | Msa0416560:intron | 35.0% | |
| TGACACTTAAAAAGGAACAG+AGG | + | chr3_2:63464413-63464432 | None:intergenic | 35.0% | |
| CTCTCCACAATAGATAACTA+AGG | - | chr3_2:63464550-63464569 | Msa0416560:intron | 35.0% | |
| TAAGCAAACTGGAAACTACT+TGG | + | chr3_2:63464998-63465017 | None:intergenic | 35.0% | |
| ! | TTCCAGTTTGCTTAATGACT+TGG | - | chr3_2:63465004-63465023 | Msa0416560:intron | 35.0% |
| ! | TTGCTTAATGACTTGGAGTA+TGG | - | chr3_2:63465011-63465030 | Msa0416560:intron | 35.0% |
| TTTCACGATAGGGAACTAAT+GGG | - | chr3_2:63465038-63465057 | Msa0416560:intron | 35.0% | |
| ! | GGAATTTTTGTGAGGTAACA+AGG | - | chr3_2:63465059-63465078 | Msa0416560:intron | 35.0% |
| AAATGGTACTTACGATAGGT+GGG | + | chr3_2:63465086-63465105 | None:intergenic | 35.0% | |
| TAAATGGTACTTACGATAGG+TGG | + | chr3_2:63465087-63465106 | None:intergenic | 35.0% | |
| GTTGAATTTCCTTTGTCTTC+TGG | - | chr3_2:63465162-63465181 | Msa0416560:intron | 35.0% | |
| AATTTCCTTTGTCTTCTGGA+AGG | - | chr3_2:63465166-63465185 | Msa0416560:intron | 35.0% | |
| ! | ACTTTGATGACAATTCCACT+TGG | - | chr3_2:63465199-63465218 | Msa0416560:intron | 35.0% |
| TGAATACAGCATATATGAGG+TGG | - | chr3_2:63465294-63465313 | Msa0416560:intron | 35.0% | |
| ATATGAGGTGGTTGTTAAGT+TGG | - | chr3_2:63465306-63465325 | Msa0416560:intron | 35.0% | |
| TATGAGGTGGTTGTTAAGTT+GGG | - | chr3_2:63465307-63465326 | Msa0416560:intron | 35.0% | |
| GTATAATACATGGCCATAAG+GGG | - | chr3_2:63465342-63465361 | Msa0416560:intron | 35.0% | |
| TTCAACGAATATGTGCAAGT+GGG | - | chr3_2:63465582-63465601 | Msa0416560:intron | 35.0% | |
| CAAAATGTGGTCACCAATTT+AGG | + | chr3_2:63465615-63465634 | None:intergenic | 35.0% | |
| CAATATTGGCCATTCTCTTA+AGG | + | chr3_2:63465747-63465766 | None:intergenic | 35.0% | |
| AGATTTCAGCTTGCACAAAT+GGG | - | chr3_2:63465959-63465978 | Msa0416560:CDS | 35.0% | |
| TGAAGAATCTTAGGATACCT+CGG | + | chr3_2:63465988-63466007 | None:intergenic | 35.0% | |
| CTCTCTTCTTGAAGAATCTT+AGG | + | chr3_2:63465997-63466016 | None:intergenic | 35.0% | |
| TTAAGTCCTCATGTTCATCA+AGG | - | chr3_2:63466163-63466182 | Msa0416560:CDS | 35.0% | |
| GTCTCAAAAGATAATTACCG+TGG | + | chr3_2:63466193-63466212 | None:intergenic | 35.0% | |
| !! | ATCTTGTTTCAGGTTTCCTA+AGG | - | chr3_2:63466281-63466300 | Msa0416560:CDS | 35.0% |
| AAAGAATACCAGCATTCCTT+AGG | + | chr3_2:63466300-63466319 | None:intergenic | 35.0% | |
| ! | TAGACTATAATCAGTGTTGG+GGG | + | chr3_2:63466325-63466344 | None:intergenic | 35.0% |
| CTAGACTATAATCAGTGTTG+GGG | + | chr3_2:63466326-63466345 | None:intergenic | 35.0% | |
| ! | TGTATCGGTCATATAGAGGT+TGG | + | chr3_2:63463086-63463105 | None:intergenic | 40.0% |
| AAAGAGAGAGATAGAGAGGA+AGG | + | chr3_2:63463194-63463213 | None:intergenic | 40.0% | |
| GCTTACAAGGTGAATTAAGG+AGG | + | chr3_2:63463225-63463244 | None:intergenic | 40.0% | |
| ! | ACTTCTTCTATTTTCTGCCC+CGG | - | chr3_2:63463441-63463460 | Msa0416560:intron | 40.0% |
| AGCAATAACCAATAGAACCG+GGG | + | chr3_2:63463461-63463480 | None:intergenic | 40.0% | |
| CAGCAATAACCAATAGAACC+GGG | + | chr3_2:63463462-63463481 | None:intergenic | 40.0% | |
| !! | GTGGTTGGTAAATGGATTGA+AGG | + | chr3_2:63464004-63464023 | None:intergenic | 40.0% |
| TGACACTTAAAAAGGAACGG+AGG | - | chr3_2:63464655-63464674 | Msa0416560:intron | 40.0% | |
| GACACTTAAAAAGGAACGGA+GGG | - | chr3_2:63464656-63464675 | Msa0416560:intron | 40.0% | |
| CTCCAAGTCATTAAGCAAAC+TGG | + | chr3_2:63465009-63465028 | None:intergenic | 40.0% | |
| ! | CTTAATGACTTGGAGTATGG+TGG | - | chr3_2:63465014-63465033 | Msa0416560:intron | 40.0% |
| CTTTCACGATAGGGAACTAA+TGG | - | chr3_2:63465037-63465056 | Msa0416560:intron | 40.0% | |
| CAATACCTTCCAGAAGACAA+AGG | + | chr3_2:63465174-63465193 | None:intergenic | 40.0% | |
| ! | CTTTGTCTTCTGGAAGGTAT+TGG | - | chr3_2:63465172-63465191 | Msa0416560:intron | 40.0% |
| TTTGCTTTCAAGCATCCAAG+TGG | + | chr3_2:63465217-63465236 | None:intergenic | 40.0% | |
| TGGAATCCAATATCCCCTTA+TGG | + | chr3_2:63465358-63465377 | None:intergenic | 40.0% | |
| ATTGGAGGGTTGAGACTATT+TGG | + | chr3_2:63465434-63465453 | None:intergenic | 40.0% | |
| GTTCAACGAATATGTGCAAG+TGG | - | chr3_2:63465581-63465600 | Msa0416560:intron | 40.0% | |
| TTATGCCACATGCGAAGATA+TGG | - | chr3_2:63465678-63465697 | Msa0416560:intron | 40.0% | |
| TAACACCATATCTTCGCATG+TGG | + | chr3_2:63465686-63465705 | None:intergenic | 40.0% | |
| CCAATATTGCCAACGCAATT+GGG | - | chr3_2:63465758-63465777 | Msa0416560:CDS | 40.0% | |
| CAGATTTCAGCTTGCACAAA+TGG | - | chr3_2:63465958-63465977 | Msa0416560:CDS | 40.0% | |
| AAATGATCAGTCACTCACTG+TGG | - | chr3_2:63466021-63466040 | Msa0416560:intron | 40.0% | |
| ATGTTCATCAAGGAATGCCA+CGG | - | chr3_2:63466173-63466192 | Msa0416560:CDS | 40.0% | |
| ! | ATTTTCTGCCCCGGTTCTAT+TGG | - | chr3_2:63463450-63463469 | Msa0416560:intron | 45.0% |
| ! | AGTGTTGAGAGAAGAGCTGA+AGG | + | chr3_2:63463496-63463515 | None:intergenic | 45.0% |
| CCTCTTGATCGTGAAAGTCT+TGG | + | chr3_2:63463751-63463770 | None:intergenic | 45.0% | |
| CCAAGACTTTCACGATCAAG+AGG | - | chr3_2:63463748-63463767 | Msa0416560:intron | 45.0% | |
| GGAAATGGAAGCTATGTTGG+AGG | - | chr3_2:63463847-63463866 | Msa0416560:intron | 45.0% | |
| TGGAAGCTATGTTGGAGGAT+CGG | - | chr3_2:63463852-63463871 | Msa0416560:intron | 45.0% | |
| GTTTGTGTGTTCTTGTGCGT+TGG | - | chr3_2:63463885-63463904 | Msa0416560:intron | 45.0% | |
| !! | GAAGGCAAGTGGTTGGTAAA+TGG | + | chr3_2:63464012-63464031 | None:intergenic | 45.0% |
| TATGTGAGAAGGCAAGTGGT+TGG | + | chr3_2:63464019-63464038 | None:intergenic | 45.0% | |
| AGTATGGTGGCTTTCACGAT+AGG | - | chr3_2:63465027-63465046 | Msa0416560:intron | 45.0% | |
| GTATGGTGGCTTTCACGATA+GGG | - | chr3_2:63465028-63465047 | Msa0416560:intron | 45.0% | |
| !! | AGGTGGTTGTTAAGTTGGGT+AGG | - | chr3_2:63465311-63465330 | Msa0416560:intron | 45.0% |
| !! | GGTGGTTGTTAAGTTGGGTA+GGG | - | chr3_2:63465312-63465331 | Msa0416560:intron | 45.0% |
| ACATGGCCATAAGGGGATAT+TGG | - | chr3_2:63465349-63465368 | Msa0416560:intron | 45.0% | |
| AGTGGGAACACGTCCTAAAT+TGG | - | chr3_2:63465599-63465618 | Msa0416560:intron | 45.0% | |
| GCCAATATTGCCAACGCAAT+TGG | - | chr3_2:63465757-63465776 | Msa0416560:CDS | 45.0% | |
| ! | CCCAATTGCGTTGGCAATAT+TGG | + | chr3_2:63465761-63465780 | None:intergenic | 45.0% |
| TGGGTATTCTCCAACTTGCA+GGG | + | chr3_2:63465785-63465804 | None:intergenic | 45.0% | |
| GGCATTCCTTGATGAACATG+AGG | + | chr3_2:63466172-63466191 | None:intergenic | 45.0% | |
| TCAGGTTTCCTAAGGAATGC+TGG | - | chr3_2:63466289-63466308 | Msa0416560:CDS | 45.0% | |
| !!! | TATATACATATTTTTTTTTT+TGG | - | chr3_2:63466067-63466086 | Msa0416560:intron | 5.0% |
| ! | AGAGATAGAGAGGAAGGTGC+AGG | + | chr3_2:63463188-63463207 | None:intergenic | 50.0% |
| !! | TGTTCTTGTGCGTTGGCTGT+GGG | - | chr3_2:63463892-63463911 | Msa0416560:intron | 50.0% |
| GTGGGTATTCTCCAACTTGC+AGG | + | chr3_2:63465786-63465805 | None:intergenic | 50.0% | |
| CTTGCACAAATGGGTATCCG+AGG | - | chr3_2:63465968-63465987 | Msa0416560:CDS | 50.0% | |
| !! | GTGTTCTTGTGCGTTGGCTG+TGG | - | chr3_2:63463891-63463910 | Msa0416560:intron | 55.0% |
| TTGCAGGGTCCCAATTGCGT+TGG | + | chr3_2:63465770-63465789 | None:intergenic | 55.0% | |
| GCAATTGGGACCCTGCAAGT+TGG | - | chr3_2:63465772-63465791 | Msa0416560:CDS | 55.0% | |
| ! | AGAGAGGAAGGTGCAGGCCA+AGG | + | chr3_2:63463182-63463201 | None:intergenic | 60.0% |
| GGCTGTGGGACATGTTGTCG+TGG | - | chr3_2:63463906-63463925 | Msa0416560:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 63463083 | 63466644 | 63463083 | ID=Msa0416560;Name=Msa0416560 |
| chr3_2 | mRNA | 63463083 | 63466644 | 63463083 | ID=Msa0416560-mRNA-1;Parent=Msa0416560;Name=Msa0416560-mRNA-1;_AED=0.12;_eAED=0.12;_QI=233|1|1|1|0.4|0.33|6|359|215 |
| chr3_2 | exon | 63463083 | 63463195 | 63463083 | ID=Msa0416560-mRNA-1:exon:13825;Parent=Msa0416560-mRNA-1 |
| chr3_2 | exon | 63463318 | 63463434 | 63463318 | ID=Msa0416560-mRNA-1:exon:13824;Parent=Msa0416560-mRNA-1 |
| chr3_2 | exon | 63463533 | 63463618 | 63463533 | ID=Msa0416560-mRNA-1:exon:13823;Parent=Msa0416560-mRNA-1 |
| chr3_2 | exon | 63463658 | 63463766 | 63463658 | ID=Msa0416560-mRNA-1:exon:13822;Parent=Msa0416560-mRNA-1 |
| chr3_2 | exon | 63465737 | 63466002 | 63465737 | ID=Msa0416560-mRNA-1:exon:13821;Parent=Msa0416560-mRNA-1 |
| chr3_2 | exon | 63466096 | 63466644 | 63466096 | ID=Msa0416560-mRNA-1:exon:13820;Parent=Msa0416560-mRNA-1 |
| chr3_2 | five_prime_UTR | 63466412 | 63466644 | 63466412 | ID=Msa0416560-mRNA-1:five_prime_utr;Parent=Msa0416560-mRNA-1 |
| chr3_2 | CDS | 63466096 | 63466411 | 63466096 | ID=Msa0416560-mRNA-1:cds;Parent=Msa0416560-mRNA-1 |
| chr3_2 | CDS | 63465737 | 63466002 | 63465737 | ID=Msa0416560-mRNA-1:cds;Parent=Msa0416560-mRNA-1 |
| chr3_2 | CDS | 63463701 | 63463766 | 63463701 | ID=Msa0416560-mRNA-1:cds;Parent=Msa0416560-mRNA-1 |
| chr3_2 | three_prime_UTR | 63463658 | 63463700 | 63463658 | ID=Msa0416560-mRNA-1:three_prime_utr;Parent=Msa0416560-mRNA-1 |
| chr3_2 | three_prime_UTR | 63463533 | 63463618 | 63463533 | ID=Msa0416560-mRNA-1:three_prime_utr;Parent=Msa0416560-mRNA-1 |
| chr3_2 | three_prime_UTR | 63463318 | 63463434 | 63463318 | ID=Msa0416560-mRNA-1:three_prime_utr;Parent=Msa0416560-mRNA-1 |
| chr3_2 | three_prime_UTR | 63463083 | 63463195 | 63463083 | ID=Msa0416560-mRNA-1:three_prime_utr;Parent=Msa0416560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
