Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0369280 | XP_003600904.1 | 96.975 | 595 | 16 | 1 | 1 | 595 | 1 | 593 | 0.0 | 1201 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0369280 | sp|Q39033|PLCD2_ARATH | 70.339 | 590 | 163 | 6 | 7 | 595 | 3 | 581 | 0.0 | 862 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0369280 | Q93YX8 | 96.975 | 595 | 16 | 1 | 1 | 595 | 1 | 593 | 0.0 | 1201 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0369280 | Msa0463310 | 0.954366 | 3.477121e-112 | -8.615850e-47 |
| Msa0369280 | Msa0508930 | 0.835194 | 1.934093e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0369280 | MtrunA17_Chr3g0113531 | 96.975 | 595 | 16 | 1 | 1 | 595 | 1 | 593 | 0.0 | 1201 |
| Msa0369280 | MtrunA17_Chr3g0112551 | 91.092 | 595 | 30 | 2 | 1 | 595 | 1 | 572 | 0.0 | 1018 |
| Msa0369280 | MtrunA17_Chr5g0437081 | 76.481 | 591 | 131 | 5 | 7 | 594 | 3 | 588 | 0.0 | 937 |
| Msa0369280 | MtrunA17_Chr5g0430181 | 63.317 | 597 | 204 | 7 | 9 | 595 | 3 | 594 | 0.0 | 773 |
| Msa0369280 | MtrunA17_Chr5g0437061 | 63.419 | 503 | 151 | 6 | 113 | 594 | 1 | 491 | 0.0 | 635 |
| Msa0369280 | MtrunA17_Chr5g0437041 | 51.333 | 600 | 257 | 8 | 18 | 594 | 19 | 606 | 0.0 | 601 |
| Msa0369280 | MtrunA17_Chr5g0430191 | 52.605 | 595 | 244 | 9 | 3 | 594 | 13 | 572 | 0.0 | 599 |
| Msa0369280 | MtrunA17_Chr3g0113521 | 51.224 | 572 | 260 | 8 | 30 | 594 | 27 | 586 | 0.0 | 575 |
| Msa0369280 | MtrunA17_Chr3g0113471 | 52.083 | 576 | 259 | 8 | 26 | 594 | 22 | 587 | 0.0 | 572 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0369280 | AT3G08510.2 | 70.339 | 590 | 163 | 6 | 7 | 595 | 3 | 581 | 0.0 | 862 |
| Msa0369280 | AT3G08510.1 | 70.339 | 590 | 163 | 6 | 7 | 595 | 3 | 581 | 0.0 | 862 |
| Msa0369280 | AT3G55940.1 | 67.061 | 592 | 182 | 7 | 7 | 595 | 3 | 584 | 0.0 | 805 |
| Msa0369280 | AT3G08510.4 | 66.271 | 590 | 158 | 7 | 7 | 595 | 3 | 552 | 0.0 | 788 |
| Msa0369280 | AT3G08510.3 | 66.271 | 590 | 158 | 7 | 7 | 595 | 3 | 552 | 0.0 | 788 |
| Msa0369280 | AT2G40116.1 | 60.573 | 558 | 199 | 7 | 44 | 594 | 69 | 612 | 0.0 | 682 |
| Msa0369280 | AT5G58700.3 | 56.716 | 603 | 247 | 7 | 1 | 595 | 1 | 597 | 0.0 | 682 |
| Msa0369280 | AT5G58700.1 | 56.716 | 603 | 247 | 7 | 1 | 595 | 1 | 597 | 0.0 | 682 |
| Msa0369280 | AT5G58700.2 | 63.878 | 490 | 170 | 4 | 109 | 595 | 4 | 489 | 0.0 | 638 |
| Msa0369280 | AT5G58690.3 | 52.167 | 600 | 246 | 7 | 9 | 595 | 7 | 578 | 0.0 | 627 |
| Msa0369280 | AT5G58690.1 | 52.167 | 600 | 246 | 7 | 9 | 595 | 7 | 578 | 0.0 | 627 |
| Msa0369280 | AT5G58690.2 | 53.516 | 583 | 229 | 8 | 27 | 595 | 5 | 559 | 0.0 | 619 |
| Msa0369280 | AT5G58670.1 | 52.641 | 587 | 245 | 4 | 7 | 592 | 2 | 556 | 0.0 | 612 |
| Msa0369280 | AT4G38530.1 | 49.915 | 587 | 258 | 8 | 8 | 592 | 3 | 555 | 0.0 | 575 |
| Msa0369280 | AT3G47290.1 | 39.766 | 513 | 246 | 11 | 84 | 594 | 79 | 530 | 7.10e-118 | 360 |
| Msa0369280 | AT3G47290.2 | 39.960 | 498 | 236 | 11 | 84 | 579 | 79 | 515 | 7.12e-114 | 351 |
| Msa0369280 | AT3G47220.1 | 36.149 | 592 | 298 | 14 | 17 | 594 | 5 | 530 | 3.65e-111 | 343 |
Find 170 sgRNAs with CRISPR-Local
Find 282 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAAATTATAATCCATTAAT+TGG | 0.072901 | 3_1:+66353129 | Msa0369280:CDS |
| CACGAACACCACGCGCTTAT+TGG | 0.162665 | 3_1:+66350240 | Msa0369280:five_prime_UTR |
| GGTATTTACATGAATATCTA+AGG | 0.226632 | 3_1:+66354696 | Msa0369280:three_prime_UTR |
| CAAATGTTTGACGTCTATTA+AGG | 0.230837 | 3_1:+66351952 | Msa0369280:CDS |
| CCATGCATCCACCCAATTAA+TGG | 0.240859 | 3_1:-66353141 | None:intergenic |
| AGGATCGAAAACCTCATTAA+TGG | 0.247589 | 3_1:-66353579 | None:intergenic |
| AGGATAGTTGGTTGCCTTCT+TGG | 0.250112 | 3_1:+66354344 | Msa0369280:CDS |
| TGGTTCTTTGGCAGGGTTAT+GGG | 0.259926 | 3_1:+66353468 | Msa0369280:intron |
| TAATTAGGTGACTGTATATA+TGG | 0.261260 | 3_1:+66353758 | Msa0369280:intron |
| GGTAGTCATCTGATGTATTT+TGG | 0.264168 | 3_1:-66352579 | None:intergenic |
| GTGGTTCTTTGGCAGGGTTA+TGG | 0.264327 | 3_1:+66353467 | Msa0369280:intron |
| CTTAGACGTCTCACTTTATC+AGG | 0.266369 | 3_1:-66352667 | None:intergenic |
| AGGGTTATGGGAGATCTCTT+TGG | 0.311117 | 3_1:+66353480 | Msa0369280:intron |
| CTTATGCAGGTTGGAATTGC+TGG | 0.313742 | 3_1:+66354280 | Msa0369280:intron |
| TTCGATGGCAAATGAGCTTT+AGG | 0.326162 | 3_1:-66353599 | None:intergenic |
| CCCACACAGGTAAGCATGTT+TGG | 0.326311 | 3_1:-66354465 | None:intergenic |
| TCAATAAAATAAACAGTATA+TGG | 0.328282 | 3_1:-66354655 | None:intergenic |
| CGAATTCCCACTTTCAGTTC+CGG | 0.328773 | 3_1:+66354378 | Msa0369280:CDS |
| ATCAAACAAAACACACTCTT+TGG | 0.339881 | 3_1:-66354760 | None:intergenic |
| TATTCCACCTTTAGGCTTCC+CGG | 0.346071 | 3_1:-66352623 | None:intergenic |
| CCATCTTACTCCTGATCTTC+AGG | 0.350102 | 3_1:+66352024 | Msa0369280:CDS |
| GGGTGATTGAATTGGATATA+TGG | 0.356065 | 3_1:+66351769 | Msa0369280:CDS |
| CTCTGAAGTGCTTTGGTGAT+AGG | 0.360312 | 3_1:-66351738 | None:intergenic |
| AGCTGTGTCTCATTGTGTTT+TGG | 0.360989 | 3_1:+66354807 | Msa0369280:three_prime_UTR |
| CCTCCTCTCTTACCTTCCAC+TGG | 0.371999 | 3_1:+66350679 | Msa0369280:CDS |
| TAGATGGTTACTCAAACATT+TGG | 0.373406 | 3_1:+66352170 | Msa0369280:intron |
| CCACAGAAGGGAAAGCCTTT+AGG | 0.373754 | 3_1:+66352329 | Msa0369280:CDS |
| GGATCGAAAACCTCATTAAT+GGG | 0.374497 | 3_1:-66353578 | None:intergenic |
| CTTCGTTGCGTCAGAATATC+CGG | 0.378354 | 3_1:+66351982 | Msa0369280:CDS |
| AAGCACTTCAGAGAGGTGTT+AGG | 0.379089 | 3_1:+66351748 | Msa0369280:CDS |
| AGGTGTTAGGGTGATTGAAT+TGG | 0.383680 | 3_1:+66351761 | Msa0369280:CDS |
| TATGTTTCTGCTGCCGGCGC+CGG | 0.387456 | 3_1:+66350413 | Msa0369280:CDS |
| CATTCCACTATTCCACCTTT+AGG | 0.387588 | 3_1:-66352631 | None:intergenic |
| GCCACTTTGGCCTGAAGATC+AGG | 0.391390 | 3_1:-66352034 | None:intergenic |
| GGTCATAATTCATATCTAAC+TGG | 0.395881 | 3_1:+66351684 | Msa0369280:CDS |
| GGAGGCACCGCCGGAGATAA+AGG | 0.396433 | 3_1:+66350453 | Msa0369280:CDS |
| GCCATCGAAAACTACTTTGA+AGG | 0.398900 | 3_1:+66353613 | Msa0369280:CDS |
| GTGTTCGTGTGATCGTGTTT+TGG | 0.402329 | 3_1:-66350226 | None:intergenic |
| TCTGAAGTGCTTTGGTGATA+GGG | 0.404606 | 3_1:-66351737 | None:intergenic |
| CCCACTTTCAGTTCCGGAGC+TGG | 0.406381 | 3_1:+66354384 | Msa0369280:CDS |
| TTTAGGTGATGAAGAAGCTT+GGG | 0.407451 | 3_1:+66352346 | Msa0369280:CDS |
| GAAACACAAGCAATCATTGA+TGG | 0.412944 | 3_1:+66350577 | Msa0369280:CDS |
| CCTCAATCAGAAAGCTTCTC+AGG | 0.413075 | 3_1:-66350525 | None:intergenic |
| CCTGAGAAGCTTTCTGATTG+AGG | 0.413824 | 3_1:+66350525 | Msa0369280:CDS |
| AGGAGTAAGATGGTCTTCTA+AGG | 0.427795 | 3_1:-66352014 | None:intergenic |
| GATGATGTTGAAGTCCTTCA+TGG | 0.428848 | 3_1:+66351807 | Msa0369280:CDS |
| TCCTACCTCAGAAACCTTGA+AGG | 0.435352 | 3_1:+66352208 | Msa0369280:CDS |
| CAAAGTCAATAGAGGATAGT+TGG | 0.441950 | 3_1:+66354332 | Msa0369280:CDS |
| TCTCCTTTGCGCGAATGTAA+TGG | 0.444524 | 3_1:-66354514 | None:intergenic |
| CATACCCTTGCATAGAAGTC+TGG | 0.448430 | 3_1:-66353834 | None:intergenic |
| AGTTTCTTCAAGTTTCTCTT+CGG | 0.450799 | 3_1:+66350646 | Msa0369280:CDS |
| TCTTCTAAGGTTATTACAAC+CGG | 0.454332 | 3_1:-66352001 | None:intergenic |
| CAAATTATAATCCATTAATT+GGG | 0.455647 | 3_1:+66353130 | Msa0369280:CDS |
| ATGCGAAGCAGCGCCAGCTC+CGG | 0.456222 | 3_1:-66354397 | None:intergenic |
| CCGGTTTAAACTCGGCGTAT+TGG | 0.456988 | 3_1:+66350432 | Msa0369280:CDS |
| CTCCTCTCTTACCTTCCACT+GGG | 0.458800 | 3_1:+66350680 | Msa0369280:CDS |
| CGCTTAATTGCTATTCATGC+CGG | 0.460356 | 3_1:+66352604 | Msa0369280:CDS |
| AACACCTCTCTGAAGTGCTT+TGG | 0.460984 | 3_1:-66351745 | None:intergenic |
| AAGGTACTCCTTAGGCGGCT+TGG | 0.465613 | 3_1:-66352276 | None:intergenic |
| TTTAATTAATCGGATATGAA+GGG | 0.467792 | 3_1:-66350155 | None:intergenic |
| CCAATACGCCGAGTTTAAAC+CGG | 0.473188 | 3_1:-66350432 | None:intergenic |
| ATAGTACCGCCTCTCAAACT+AGG | 0.474142 | 3_1:-66352380 | None:intergenic |
| CATACGGAAAAGAAATTGTC+AGG | 0.475072 | 3_1:+66352725 | Msa0369280:CDS |
| CCTAAAGGCTTTCCCTTCTG+TGG | 0.479774 | 3_1:-66352329 | None:intergenic |
| GAGGTAATGCGTGTACCTTT+CGG | 0.479808 | 3_1:-66353105 | None:intergenic |
| ATATTCATGTAAATACCATA+AGG | 0.480321 | 3_1:-66354690 | None:intergenic |
| GTTTAAACTCGGCGTATTGG+AGG | 0.484480 | 3_1:+66350435 | Msa0369280:CDS |
| ACTCTTGCGTTATAATGTAA+TGG | 0.486009 | 3_1:-66354617 | None:intergenic |
| AACAAAACCGCATCCTCCAT+TGG | 0.486065 | 3_1:-66353525 | None:intergenic |
| CCATTAATTGGGTGGATGCA+TGG | 0.487420 | 3_1:+66353141 | Msa0369280:CDS |
| TGTTGATGAAGATGATCTTA+AGG | 0.488941 | 3_1:+66352522 | Msa0369280:CDS |
| CGTGTGAGTTCTGTGTTTAG+AGG | 0.489330 | 3_1:-66350197 | None:intergenic |
| TCTTCAGGCCAAAGTGGCTC+AGG | 0.489930 | 3_1:+66352039 | Msa0369280:CDS |
| GCCAGCTCCGGAACTGAAAG+TGG | 0.492825 | 3_1:-66354385 | None:intergenic |
| GAAAACTGGTCCCATTAATG+AGG | 0.492864 | 3_1:+66353568 | Msa0369280:CDS |
| GATGGTTGCATTTAACATGC+AGG | 0.494100 | 3_1:+66353170 | Msa0369280:CDS |
| CAAGCTTCTTCATCACCTAA+AGG | 0.494465 | 3_1:-66352344 | None:intergenic |
| AAGGACTTCAACATCATCCT+TGG | 0.496121 | 3_1:-66351802 | None:intergenic |
| TTGGTTGCCTTCTTGGAATG+AGG | 0.497276 | 3_1:+66354351 | Msa0369280:CDS |
| TATCATCGTTACTCCGATGA+AGG | 0.497606 | 3_1:+66350481 | Msa0369280:CDS |
| CTTTAGGTGATGAAGAAGCT+TGG | 0.501759 | 3_1:+66352345 | Msa0369280:CDS |
| GGAAAATGAGGAACCACAGA+AGG | 0.504129 | 3_1:+66352316 | Msa0369280:CDS |
| ACATCATCCTTGGAGTCATT+AGG | 0.504800 | 3_1:-66351792 | None:intergenic |
| TATTCATGTAAATACCATAA+GGG | 0.509556 | 3_1:-66354689 | None:intergenic |
| TAATCGGATATGAAGGGGAA+TGG | 0.511911 | 3_1:-66350149 | None:intergenic |
| TCCTTCAAGGTTTCTGAGGT+AGG | 0.514356 | 3_1:-66352209 | None:intergenic |
| AAAAGACGAAAAGGAAAATG+AGG | 0.515925 | 3_1:+66352304 | Msa0369280:CDS |
| AGCACTTCAGAGAGGTGTTA+GGG | 0.516302 | 3_1:+66351749 | Msa0369280:CDS |
| CGGTACTATAGCTGATTACA+AGG | 0.516593 | 3_1:+66352394 | Msa0369280:CDS |
| CGGCGTATTGGAGGCACCGC+CGG | 0.517697 | 3_1:+66350444 | Msa0369280:CDS |
| GTAACTAACCTGAGCCACTT+TGG | 0.519283 | 3_1:-66352047 | None:intergenic |
| CAAGGAATGTTTAAAGCCAA+TGG | 0.521167 | 3_1:+66353509 | Msa0369280:CDS |
| GAAGCCTAAAGGTGGAATAG+TGG | 0.521864 | 3_1:+66352627 | Msa0369280:CDS |
| CCTTGAAGCAAAAGACGAAA+AGG | 0.523072 | 3_1:+66352295 | Msa0369280:CDS |
| TGCCGGCGCCGGTTTAAACT+CGG | 0.525526 | 3_1:+66350424 | Msa0369280:CDS |
| TCACATTATTACATATTCAC+CGG | 0.529900 | 3_1:+66351663 | Msa0369280:CDS |
| AGGTGAAGGAAATTCCTTCA+AGG | 0.530092 | 3_1:-66352222 | None:intergenic |
| AATTAGGTGACTGTATATAT+GGG | 0.530266 | 3_1:+66353759 | Msa0369280:intron |
| TGAAGATGATCTTAAGGAGG+AGG | 0.532033 | 3_1:+66352528 | Msa0369280:CDS |
| CATATCAACCAAGCCGCCTA+AGG | 0.532591 | 3_1:+66352268 | Msa0369280:CDS |
| TTTGCTTCAAGGTACTCCTT+AGG | 0.533133 | 3_1:-66352284 | None:intergenic |
| ATTATAATCCATTAATTGGG+TGG | 0.536189 | 3_1:+66353133 | Msa0369280:CDS |
| ACAGCGTATGTTTCTGCTGC+CGG | 0.536369 | 3_1:+66350407 | Msa0369280:CDS |
| ATTCATGCCGGGAAGCCTAA+AGG | 0.537834 | 3_1:+66352616 | Msa0369280:CDS |
| TGTCATGATCCCTCCTTCAT+CGG | 0.537909 | 3_1:-66350494 | None:intergenic |
| CTGAAGTGCTTTGGTGATAG+GGG | 0.540341 | 3_1:-66351736 | None:intergenic |
| CGCCGAGTTTAAACCGGCGC+CGG | 0.546706 | 3_1:-66350426 | None:intergenic |
| TTTAAAGCCAATGGAGGATG+CGG | 0.547215 | 3_1:+66353518 | Msa0369280:CDS |
| AAGTGAGTCACAGCTCGAAA+AGG | 0.551984 | 3_1:+66352693 | Msa0369280:CDS |
| GCTTAATTGCTATTCATGCC+GGG | 0.555867 | 3_1:+66352605 | Msa0369280:CDS |
| CGGATATTCTGACGCAACGA+AGG | 0.555918 | 3_1:-66351981 | None:intergenic |
| TTAATTAATCGGATATGAAG+GGG | 0.557166 | 3_1:-66350154 | None:intergenic |
| TGATAAAGCTCCTTTATCTC+CGG | 0.557185 | 3_1:-66350463 | None:intergenic |
| TAGTACCGCCTCTCAAACTA+GGG | 0.558608 | 3_1:-66352379 | None:intergenic |
| ACAATGGTAAACTCATATCT+TGG | 0.558961 | 3_1:-66351641 | None:intergenic |
| TAATGGATTATAATTTGATG+AGG | 0.561590 | 3_1:-66353124 | None:intergenic |
| GTGGATGCATGGAGCTCAGA+TGG | 0.561990 | 3_1:+66353152 | Msa0369280:CDS |
| GTGTGAGAATAATGTATTGG+TGG | 0.563500 | 3_1:+66354719 | Msa0369280:three_prime_UTR |
| TTGAGTATCTTTCATCGTAG+AGG | 0.565571 | 3_1:+66350610 | Msa0369280:CDS |
| TCCTGATCTTCAGGCCAAAG+TGG | 0.568046 | 3_1:+66352033 | Msa0369280:CDS |
| ATCGTTACTCCGATGAAGGA+GGG | 0.568712 | 3_1:+66350485 | Msa0369280:CDS |
| GAAAAGGCTGCTGAAACATA+CGG | 0.572490 | 3_1:+66352709 | Msa0369280:CDS |
| GCTTCAAGGTACTCCTTAGG+CGG | 0.576983 | 3_1:-66352281 | None:intergenic |
| ATTCCATTACATTCGCGCAA+AGG | 0.578536 | 3_1:+66354511 | Msa0369280:CDS |
| CCTGAAGATCAGGAGTAAGA+TGG | 0.584011 | 3_1:-66352024 | None:intergenic |
| AGATCTCTTTGGTTGATGCA+AGG | 0.584104 | 3_1:+66353491 | Msa0369280:CDS |
| AAAAGGATTACCCCAGTGGA+AGG | 0.585997 | 3_1:-66350691 | None:intergenic |
| TCGAATACCTCATTCCAAGA+AGG | 0.587279 | 3_1:-66354358 | None:intergenic |
| GTATTTACATGAATATCTAA+GGG | 0.588101 | 3_1:+66354697 | Msa0369280:three_prime_UTR |
| CATCGTTACTCCGATGAAGG+AGG | 0.593498 | 3_1:+66350484 | Msa0369280:CDS |
| ACCCCAGTGGAAGGTAAGAG+AGG | 0.593533 | 3_1:-66350682 | None:intergenic |
| GTGACTGTATATATGGGAGA+AGG | 0.593969 | 3_1:+66353765 | Msa0369280:CDS |
| GGTAAACTTACATTCCATGA+AGG | 0.594580 | 3_1:-66351821 | None:intergenic |
| AGGGTGTGAGAATAATGTAT+TGG | 0.595337 | 3_1:+66354716 | Msa0369280:three_prime_UTR |
| CTGTATATATGGGAGAAGGA+TGG | 0.596370 | 3_1:+66353769 | Msa0369280:CDS |
| CACCTCCAGACTTCTATGCA+AGG | 0.598961 | 3_1:+66353829 | Msa0369280:CDS |
| AGTTAGATATGAATTATGAC+CGG | 0.599354 | 3_1:-66351682 | None:intergenic |
| TTCTATCTTTAGCAAAACAG+TGG | 0.603639 | 3_1:+66352499 | Msa0369280:intron |
| AAATTCCTTCAAGGTTTCTG+AGG | 0.606668 | 3_1:-66352213 | None:intergenic |
| ACCTCCAGACTTCTATGCAA+GGG | 0.606755 | 3_1:+66353830 | Msa0369280:CDS |
| GGAGGAAGATTCTGATGAAG+CGG | 0.606856 | 3_1:+66352546 | Msa0369280:CDS |
| GAAAATGAGGAACCACAGAA+GGG | 0.607163 | 3_1:+66352317 | Msa0369280:CDS |
| CCAAACATGCTTACCTGTGT+GGG | 0.607645 | 3_1:+66354465 | Msa0369280:CDS |
| TGATGAAGATGATCTTAAGG+AGG | 0.607713 | 3_1:+66352525 | Msa0369280:CDS |
| AAAGAAGTCCCTAGTTTGAG+AGG | 0.608524 | 3_1:+66352371 | Msa0369280:CDS |
| AAACATTTGATAAGTGCCAC+AGG | 0.609405 | 3_1:-66351938 | None:intergenic |
| CCTGTGTGGGAACTAAGAAG+TGG | 0.609701 | 3_1:+66354478 | Msa0369280:CDS |
| AATATGTAATAATGTGACAA+TGG | 0.610020 | 3_1:-66351657 | None:intergenic |
| TATATGGCCTAATGACTCCA+AGG | 0.611089 | 3_1:+66351785 | Msa0369280:CDS |
| TCTGAGAAGGATGACTTTGG+TGG | 0.635751 | 3_1:+66354442 | Msa0369280:CDS |
| CCAGTGGAAGGTAAGAGAGG+AGG | 0.636569 | 3_1:-66350679 | None:intergenic |
| CAGGACATTGACGACTCCTG+TGG | 0.642402 | 3_1:+66351922 | Msa0369280:intron |
| CCACTTCTTAGTTCCCACAC+AGG | 0.642948 | 3_1:-66354478 | None:intergenic |
| TAAAGCTCCTTTATCTCCGG+CGG | 0.645354 | 3_1:-66350460 | None:intergenic |
| ACCCTTGCATAGAAGTCTGG+AGG | 0.646972 | 3_1:-66353831 | None:intergenic |
| TGAGTATGACATGTCTGAGA+AGG | 0.650839 | 3_1:+66354429 | Msa0369280:CDS |
| CCAGCTCCGGAACTGAAAGT+GGG | 0.652112 | 3_1:-66354384 | None:intergenic |
| TTAGGTGATGAAGAAGCTTG+GGG | 0.654802 | 3_1:+66352347 | Msa0369280:CDS |
| ATGTCTGAGAAGGATGACTT+TGG | 0.654831 | 3_1:+66354439 | Msa0369280:CDS |
| AATAGTGGAATGTCTCAAAG+TGG | 0.664523 | 3_1:+66352642 | Msa0369280:CDS |
| GCCAAACATGCTTACCTGTG+TGG | 0.670365 | 3_1:+66354464 | Msa0369280:CDS |
| CATGAATAGCAATTAAGCGT+CGG | 0.671424 | 3_1:-66352600 | None:intergenic |
| CTGTACAAAATATATATCAG+AGG | 0.673312 | 3_1:-66354594 | None:intergenic |
| GGAATGTTTAAAGCCAATGG+AGG | 0.677096 | 3_1:+66353512 | Msa0369280:CDS |
| ATATTGCGAGTGTATCCGAA+AGG | 0.679225 | 3_1:+66353090 | Msa0369280:CDS |
| GAAGTCCCTAGTTTGAGAGG+CGG | 0.688180 | 3_1:+66352374 | Msa0369280:CDS |
| CATGCCGGGAAGCCTAAAGG+TGG | 0.692926 | 3_1:+66352619 | Msa0369280:CDS |
| TCCTCTCTTACCTTCCACTG+GGG | 0.713044 | 3_1:+66350681 | Msa0369280:CDS |
| ACTAACTACCAATAAGCGCG+TGG | 0.713291 | 3_1:-66350248 | None:intergenic |
| ATCACCAAAGCACTTCAGAG+AGG | 0.715817 | 3_1:+66351741 | Msa0369280:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTATTTTTAATTAAT+CGG | - | chr3_1:66350168-66350187 | None:intergenic | 0.0% |
| !! | ATTACTACAAAAAAAAAAAA+AGG | - | chr3_1:66350711-66350730 | None:intergenic | 10.0% |
| !!! | TTTTTTGATAAATCAATTTT+GGG | - | chr3_1:66351378-66351397 | None:intergenic | 10.0% |
| !!! | ATTTTTTGATAAATCAATTT+TGG | - | chr3_1:66351379-66351398 | None:intergenic | 10.0% |
| !! | AGCAAAAATAAATATATTAA+TGG | - | chr3_1:66353443-66353462 | None:intergenic | 10.0% |
| !!! | AATTTGATTGTGTTTTTTTT+TGG | + | chr3_1:66350728-66350747 | Msa0369280:intron | 15.0% |
| !!! | ATTTAATTTAATAGTCAACA+AGG | - | chr3_1:66350838-66350857 | None:intergenic | 15.0% |
| !! | AAATTTCATTGTAAAAACAA+AGG | - | chr3_1:66351068-66351087 | None:intergenic | 15.0% |
| !!! | TTTTTGATAAATCAATTTTG+GGG | - | chr3_1:66351377-66351396 | None:intergenic | 15.0% |
| !! | TCAAATTATAATCCATTAAT+TGG | + | chr3_1:66353129-66353148 | Msa0369280:CDS | 15.0% |
| !! | CAAATTATAATCCATTAATT+GGG | + | chr3_1:66353130-66353149 | Msa0369280:CDS | 15.0% |
| !!! | ATTTTGGGTAATAATTTTTA+AGG | + | chr3_1:66353267-66353286 | Msa0369280:intron | 15.0% |
| !!! | TAATATATTTATTTTTGCTG+TGG | + | chr3_1:66353444-66353463 | Msa0369280:intron | 15.0% |
| !!! | AATATATTTATTTTTGCTGT+GGG | + | chr3_1:66353445-66353464 | Msa0369280:intron | 15.0% |
| !! | TCAAATAAAATAATTCATTC+AGG | - | chr3_1:66353884-66353903 | None:intergenic | 15.0% |
| !! | TCAATAAAATAAACAGTATA+TGG | - | chr3_1:66354658-66354677 | None:intergenic | 15.0% |
| !! | TTTAATTAATCGGATATGAA+GGG | - | chr3_1:66350158-66350177 | None:intergenic | 20.0% |
| !!! | TTTTAATTAATCGGATATGA+AGG | - | chr3_1:66350159-66350178 | None:intergenic | 20.0% |
| !! | ACAAACAAAGAATCAAAAAA+TGG | + | chr3_1:66350360-66350379 | Msa0369280:exon | 20.0% |
| !! | CTAACTCTATAAATTATGTT+TGG | - | chr3_1:66351403-66351422 | None:intergenic | 20.0% |
| !!! | GTAATTTTTATGAACTATGT+TGG | + | chr3_1:66351564-66351583 | Msa0369280:intron | 20.0% |
| !! | AATATGTAATAATGTGACAA+TGG | - | chr3_1:66351660-66351679 | None:intergenic | 20.0% |
| !! | AATGTTGTATATAAATTGCA+AGG | + | chr3_1:66352431-66352450 | Msa0369280:intron | 20.0% |
| !!! | TTTAATTTTGTATGTGAGAT+TGG | + | chr3_1:66352457-66352476 | Msa0369280:intron | 20.0% |
| !! | TATCTCATATTTCTTTAATC+CGG | - | chr3_1:66352849-66352868 | None:intergenic | 20.0% |
| !!! | CATTTATATTCAATTAGCTT+TGG | + | chr3_1:66352978-66352997 | Msa0369280:intron | 20.0% |
| !!! | TAATGGATTATAATTTGATG+AGG | - | chr3_1:66353127-66353146 | None:intergenic | 20.0% |
| !!! | TTTTCATAACAGTATCAAAA+GGG | - | chr3_1:66354309-66354328 | None:intergenic | 20.0% |
| !!! | TTTTTCATAACAGTATCAAA+AGG | - | chr3_1:66354310-66354329 | None:intergenic | 20.0% |
| !! | TATTCATGTAAATACCATAA+GGG | - | chr3_1:66354692-66354711 | None:intergenic | 20.0% |
| !! | ATATTCATGTAAATACCATA+AGG | - | chr3_1:66354693-66354712 | None:intergenic | 20.0% |
| !! | GTATTTACATGAATATCTAA+GGG | + | chr3_1:66354697-66354716 | Msa0369280:three_prime_UTR | 20.0% |
| ! | TTAATTAATCGGATATGAAG+GGG | - | chr3_1:66350157-66350176 | None:intergenic | 25.0% |
| !! | ATAGTTGTTCAGTTTCTTTT+TGG | + | chr3_1:66350769-66350788 | Msa0369280:intron | 25.0% |
| ! | TCATCATGAATTTCTATAAC+TGG | + | chr3_1:66350891-66350910 | Msa0369280:intron | 25.0% |
| !! | TAACTTCATTAGTCTATGTT+TGG | + | chr3_1:66350917-66350936 | Msa0369280:intron | 25.0% |
| ! | TAAAAGTGATTTGATGTGTT+TGG | + | chr3_1:66350978-66350997 | Msa0369280:intron | 25.0% |
| !! | TGTATGTTTTCTTCTATGTT+TGG | + | chr3_1:66351156-66351175 | Msa0369280:intron | 25.0% |
| !!! | AGAATCAATTCTAGAATCAA+AGG | + | chr3_1:66351315-66351334 | Msa0369280:intron | 25.0% |
| ! | TCACATTATTACATATTCAC+CGG | + | chr3_1:66351663-66351682 | Msa0369280:CDS | 25.0% |
| ! | AGTTAGATATGAATTATGAC+CGG | - | chr3_1:66351685-66351704 | None:intergenic | 25.0% |
| ! | TGTTGGAGATATAATTCAAA+CGG | - | chr3_1:66351845-66351864 | None:intergenic | 25.0% |
| ! | ATGAATCTTCTTCAAATTGT+TGG | - | chr3_1:66351862-66351881 | None:intergenic | 25.0% |
| ! | AACCATCTAAAAATTGAACA+GGG | - | chr3_1:66352159-66352178 | None:intergenic | 25.0% |
| ! | TAACCATCTAAAAATTGAAC+AGG | - | chr3_1:66352160-66352179 | None:intergenic | 25.0% |
| !!! | ATCCTTTTTTTAAGTGATTC+AGG | - | chr3_1:66352245-66352264 | None:intergenic | 25.0% |
| !! | TATAATTTTACCTGTTGCAT+TGG | + | chr3_1:66352797-66352816 | Msa0369280:intron | 25.0% |
| !!! | TTAGAACACTGTTTTTTAGA+TGG | + | chr3_1:66352907-66352926 | Msa0369280:intron | 25.0% |
| ! | ATTATAATCCATTAATTGGG+TGG | + | chr3_1:66353133-66353152 | Msa0369280:CDS | 25.0% |
| !!! | GGATACTGATTGAAAATTTT+GGG | + | chr3_1:66353252-66353271 | Msa0369280:intron | 25.0% |
| !! | TTTGAGTAATGACTTTTACA+AGG | + | chr3_1:66353658-66353677 | Msa0369280:intron | 25.0% |
| !! | TTGAGTAATGACTTTTACAA+GGG | + | chr3_1:66353659-66353678 | Msa0369280:intron | 25.0% |
| !! | TGCTTTTCTTACTCTTAATT+AGG | + | chr3_1:66353743-66353762 | Msa0369280:intron | 25.0% |
| ! | TAATTAGGTGACTGTATATA+TGG | + | chr3_1:66353758-66353777 | Msa0369280:intron | 25.0% |
| ! | AATTAGGTGACTGTATATAT+GGG | + | chr3_1:66353759-66353778 | Msa0369280:intron | 25.0% |
| ! | TATTTGATAAACTCTTATGC+AGG | + | chr3_1:66354267-66354286 | Msa0369280:intron | 25.0% |
| ! | GAAAAAAACAAAGTCAATAG+AGG | + | chr3_1:66354324-66354343 | Msa0369280:CDS | 25.0% |
| ! | CTGTACAAAATATATATCAG+AGG | - | chr3_1:66354597-66354616 | None:intergenic | 25.0% |
| ! | GGTATTTACATGAATATCTA+AGG | + | chr3_1:66354696-66354715 | Msa0369280:three_prime_UTR | 25.0% |
| !!! | ACGCTGTATGTTTGTTTTTT+CGG | - | chr3_1:66350394-66350413 | None:intergenic | 30.0% |
| ! | AGTTTCTTCAAGTTTCTCTT+CGG | + | chr3_1:66350646-66350665 | Msa0369280:CDS | 30.0% |
| !!! | TCAGTTTCTTTTTGGTGTTA+TGG | + | chr3_1:66350777-66350796 | Msa0369280:intron | 30.0% |
| ATGGTAGATTTGTAACTCAT+TGG | + | chr3_1:66350864-66350883 | Msa0369280:intron | 30.0% | |
| TGGTAGATTTGTAACTCATT+GGG | + | chr3_1:66350865-66350884 | Msa0369280:intron | 30.0% | |
| !!! | TCTATGTTTGGTTTTACGTT+TGG | + | chr3_1:66350929-66350948 | Msa0369280:intron | 30.0% |
| ! | ATTGATTCTAACTTGAAGCT+AGG | + | chr3_1:66351034-66351053 | Msa0369280:intron | 30.0% |
| CAAGTAAAGTGGTTTATGTT+TGG | - | chr3_1:66351121-66351140 | None:intergenic | 30.0% | |
| AAAGTGAGTTACAAGTAAAG+TGG | - | chr3_1:66351132-66351151 | None:intergenic | 30.0% | |
| !! | TATAGAGTTAGAGTTGCTTT+TGG | + | chr3_1:66351412-66351431 | Msa0369280:intron | 30.0% |
| ACAATGGTAAACTCATATCT+TGG | - | chr3_1:66351644-66351663 | None:intergenic | 30.0% | |
| GGTCATAATTCATATCTAAC+TGG | + | chr3_1:66351684-66351703 | Msa0369280:CDS | 30.0% | |
| ! | GTTGCTGTTAGTAAAATACA+TGG | - | chr3_1:66351885-66351904 | None:intergenic | 30.0% |
| ACAAAATGATGCAATCTTAC+AGG | + | chr3_1:66351903-66351922 | Msa0369280:intron | 30.0% | |
| CAAATGTTTGACGTCTATTA+AGG | + | chr3_1:66351952-66351971 | Msa0369280:CDS | 30.0% | |
| !! | TCTTCTAAGGTTATTACAAC+CGG | - | chr3_1:66352004-66352023 | None:intergenic | 30.0% |
| TAGATGGTTACTCAAACATT+TGG | + | chr3_1:66352170-66352189 | Msa0369280:intron | 30.0% | |
| !!! | TTTTTAAGTGATTCAGGTGA+AGG | - | chr3_1:66352239-66352258 | None:intergenic | 30.0% |
| CACCTGAATCACTTAAAAAA+AGG | + | chr3_1:66352240-66352259 | Msa0369280:CDS | 30.0% | |
| AAAAGACGAAAAGGAAAATG+AGG | + | chr3_1:66352304-66352323 | Msa0369280:CDS | 30.0% | |
| ! | ATTTTGTATGTGAGATTGGT+TGG | + | chr3_1:66352461-66352480 | Msa0369280:intron | 30.0% |
| TTCTATCTTTAGCAAAACAG+TGG | + | chr3_1:66352499-66352518 | Msa0369280:intron | 30.0% | |
| ! | TGTTGATGAAGATGATCTTA+AGG | + | chr3_1:66352522-66352541 | Msa0369280:CDS | 30.0% |
| TTTAATCCGGTAACAATAAC+AGG | - | chr3_1:66352836-66352855 | None:intergenic | 30.0% | |
| ! | TTTTTAGATGGCATATCGAA+CGG | + | chr3_1:66352919-66352938 | Msa0369280:intron | 30.0% |
| !! | CGGATACTGATTGAAAATTT+TGG | + | chr3_1:66353251-66353270 | Msa0369280:intron | 30.0% |
| !!! | ATATTTATTTTTGCTGTGGG+TGG | + | chr3_1:66353448-66353467 | Msa0369280:intron | 30.0% |
| ! | CCAGTTTTCAATAGAAAATC+AGG | - | chr3_1:66353557-66353576 | None:intergenic | 30.0% |
| ! | CCTGATTTTCTATTGAAAAC+TGG | + | chr3_1:66353554-66353573 | Msa0369280:CDS | 30.0% |
| ! | TGAGTAATGACTTTTACAAG+GGG | + | chr3_1:66353660-66353679 | Msa0369280:intron | 30.0% |
| TCTAGACTTGATTCTAACAA+AGG | + | chr3_1:66353717-66353736 | Msa0369280:intron | 30.0% | |
| ATAACTGGAACATAACTGTT+TGG | - | chr3_1:66354148-66354167 | None:intergenic | 30.0% | |
| ! | CGAAGCATTAGAAAAACATA+TGG | - | chr3_1:66354180-66354199 | None:intergenic | 30.0% |
| ACTCTTGCGTTATAATGTAA+TGG | - | chr3_1:66354620-66354639 | None:intergenic | 30.0% | |
| !!! | TGATGTTTTTTTTGCCCTTA+TGG | + | chr3_1:66354675-66354694 | Msa0369280:three_prime_UTR | 30.0% |
| ATCAAACAAAACACACTCTT+TGG | - | chr3_1:66354763-66354782 | None:intergenic | 30.0% | |
| !! | GTTTTGGATTTTGACATTAG+TGG | + | chr3_1:66354823-66354842 | Msa0369280:three_prime_UTR | 30.0% |
| TGATAAAGCTCCTTTATCTC+CGG | - | chr3_1:66350466-66350485 | None:intergenic | 35.0% | |
| GAAACACAAGCAATCATTGA+TGG | + | chr3_1:66350577-66350596 | Msa0369280:CDS | 35.0% | |
| TTGAGTATCTTTCATCGTAG+AGG | + | chr3_1:66350610-66350629 | Msa0369280:CDS | 35.0% | |
| AAAAAAAAGGATTACCCCAG+TGG | - | chr3_1:66350698-66350717 | None:intergenic | 35.0% | |
| ! | TTGATGTGTTTGGTTTCTCT+TGG | + | chr3_1:66350988-66351007 | Msa0369280:intron | 35.0% |
| ! | TGATGTGTTTGGTTTCTCTT+GGG | + | chr3_1:66350989-66351008 | Msa0369280:intron | 35.0% |
| !! | TTCTATGTTTGGTTCTGCTT+TGG | + | chr3_1:66351167-66351186 | Msa0369280:intron | 35.0% |
| ! | TAGGTGAAGTGATTTGTGTT+TGG | + | chr3_1:66351249-66351268 | Msa0369280:intron | 35.0% |
| !! | GGCACTTGAAAAGCATTATA+AGG | + | chr3_1:66351433-66351452 | Msa0369280:intron | 35.0% |
| TAAGTGCATGTTTGAATCTG+CGG | - | chr3_1:66351515-66351534 | None:intergenic | 35.0% | |
| GAACTATGTTGGTGTGATAA+TGG | + | chr3_1:66351575-66351594 | Msa0369280:intron | 35.0% | |
| ! | CTGTTTCTTTGTGTGATTTC+AGG | + | chr3_1:66351614-66351633 | Msa0369280:intron | 35.0% |
| GGGTGATTGAATTGGATATA+TGG | + | chr3_1:66351769-66351788 | Msa0369280:CDS | 35.0% | |
| GGTAAACTTACATTCCATGA+AGG | - | chr3_1:66351824-66351843 | None:intergenic | 35.0% | |
| AAACATTTGATAAGTGCCAC+AGG | - | chr3_1:66351941-66351960 | None:intergenic | 35.0% | |
| !! | AGCCCTGTTCAATTTTTAGA+TGG | + | chr3_1:66352154-66352173 | Msa0369280:intron | 35.0% |
| AAATTCCTTCAAGGTTTCTG+AGG | - | chr3_1:66352216-66352235 | None:intergenic | 35.0% | |
| TTTAGGTGATGAAGAAGCTT+GGG | + | chr3_1:66352346-66352365 | Msa0369280:CDS | 35.0% | |
| TGATGAAGATGATCTTAAGG+AGG | + | chr3_1:66352525-66352544 | Msa0369280:CDS | 35.0% | |
| ! | GGTAGTCATCTGATGTATTT+TGG | - | chr3_1:66352582-66352601 | None:intergenic | 35.0% |
| CATGAATAGCAATTAAGCGT+CGG | - | chr3_1:66352603-66352622 | None:intergenic | 35.0% | |
| ! | AATAGTGGAATGTCTCAAAG+TGG | + | chr3_1:66352642-66352661 | Msa0369280:CDS | 35.0% |
| CATACGGAAAAGAAATTGTC+AGG | + | chr3_1:66352725-66352744 | Msa0369280:CDS | 35.0% | |
| TTCGATCCTGTTATTGTTAC+CGG | + | chr3_1:66352827-66352846 | Msa0369280:intron | 35.0% | |
| AATCGGTGAAACTATTGTCA+AGG | - | chr3_1:66352881-66352900 | None:intergenic | 35.0% | |
| !! | CAGTGTTCTAAGAAGACAAT+CGG | - | chr3_1:66352898-66352917 | None:intergenic | 35.0% |
| TCAATAACAAGAAACCTGTG+AGG | + | chr3_1:66353221-66353240 | Msa0369280:intron | 35.0% | |
| ! | TTTTGTCTTGACTTTCACTG+TGG | + | chr3_1:66353319-66353338 | Msa0369280:intron | 35.0% |
| AATGTCTTGATACAGCTGAA+AGG | - | chr3_1:66353372-66353391 | None:intergenic | 35.0% | |
| ! | CAAGGAATGTTTAAAGCCAA+TGG | + | chr3_1:66353509-66353528 | Msa0369280:CDS | 35.0% |
| GGATCGAAAACCTCATTAAT+GGG | - | chr3_1:66353581-66353600 | None:intergenic | 35.0% | |
| AGGATCGAAAACCTCATTAA+TGG | - | chr3_1:66353582-66353601 | None:intergenic | 35.0% | |
| ! | ACCTTCAAAGTAGTTTTCGA+TGG | - | chr3_1:66353617-66353636 | None:intergenic | 35.0% |
| CTCAAATCTCAAAGCTGTAA+AGG | - | chr3_1:66353644-66353663 | None:intergenic | 35.0% | |
| AGTCTAGAGACACTTAATGA+TGG | - | chr3_1:66353705-66353724 | None:intergenic | 35.0% | |
| !! | TTCCATAAGCTCTCTAAGAT+AGG | + | chr3_1:66353994-66354013 | Msa0369280:intron | 35.0% |
| AACCTATCTTAGAGAGCTTA+TGG | - | chr3_1:66353999-66354018 | None:intergenic | 35.0% | |
| ATATGGATGCTAGCTATAAC+TGG | - | chr3_1:66354163-66354182 | None:intergenic | 35.0% | |
| !! | GAAATGATAGAAGCACTGAA+GGG | - | chr3_1:66354242-66354261 | None:intergenic | 35.0% |
| !! | AGAAATGATAGAAGCACTGA+AGG | - | chr3_1:66354243-66354262 | None:intergenic | 35.0% |
| TGATAAACTCTTATGCAGGT+TGG | + | chr3_1:66354271-66354290 | Msa0369280:intron | 35.0% | |
| CAAAGTCAATAGAGGATAGT+TGG | + | chr3_1:66354332-66354351 | Msa0369280:CDS | 35.0% | |
| AGGGTGTGAGAATAATGTAT+TGG | + | chr3_1:66354716-66354735 | Msa0369280:three_prime_UTR | 35.0% | |
| GTGTGAGAATAATGTATTGG+TGG | + | chr3_1:66354719-66354738 | Msa0369280:three_prime_UTR | 35.0% | |
| !! | GATTTTGACATTAGTGGCAA+AGG | + | chr3_1:66354829-66354848 | Msa0369280:three_prime_UTR | 35.0% |
| TAATCGGATATGAAGGGGAA+TGG | - | chr3_1:66350152-66350171 | None:intergenic | 40.0% | |
| TATCATCGTTACTCCGATGA+AGG | + | chr3_1:66350481-66350500 | Msa0369280:CDS | 40.0% | |
| CGTGACTAAAAGTGAGTTGT+AGG | + | chr3_1:66351230-66351249 | Msa0369280:intron | 40.0% | |
| GCAGATTCAAACATGCACTT+AGG | + | chr3_1:66351514-66351533 | Msa0369280:intron | 40.0% | |
| ! | TCTGAAGTGCTTTGGTGATA+GGG | - | chr3_1:66351740-66351759 | None:intergenic | 40.0% |
| AGGTGTTAGGGTGATTGAAT+TGG | + | chr3_1:66351761-66351780 | Msa0369280:CDS | 40.0% | |
| TATATGGCCTAATGACTCCA+AGG | + | chr3_1:66351785-66351804 | Msa0369280:CDS | 40.0% | |
| ACATCATCCTTGGAGTCATT+AGG | - | chr3_1:66351795-66351814 | None:intergenic | 40.0% | |
| AAGGACTTCAACATCATCCT+TGG | - | chr3_1:66351805-66351824 | None:intergenic | 40.0% | |
| GATGATGTTGAAGTCCTTCA+TGG | + | chr3_1:66351807-66351826 | Msa0369280:CDS | 40.0% | |
| AGGAGTAAGATGGTCTTCTA+AGG | - | chr3_1:66352017-66352036 | None:intergenic | 40.0% | |
| AGGTGAAGGAAATTCCTTCA+AGG | - | chr3_1:66352225-66352244 | None:intergenic | 40.0% | |
| ! | TTTGCTTCAAGGTACTCCTT+AGG | - | chr3_1:66352287-66352306 | None:intergenic | 40.0% |
| ! | CCTTTTCGTCTTTTGCTTCA+AGG | - | chr3_1:66352298-66352317 | None:intergenic | 40.0% |
| CCTTGAAGCAAAAGACGAAA+AGG | + | chr3_1:66352295-66352314 | Msa0369280:CDS | 40.0% | |
| GAAAATGAGGAACCACAGAA+GGG | + | chr3_1:66352317-66352336 | Msa0369280:CDS | 40.0% | |
| CAAGCTTCTTCATCACCTAA+AGG | - | chr3_1:66352347-66352366 | None:intergenic | 40.0% | |
| CTTTAGGTGATGAAGAAGCT+TGG | + | chr3_1:66352345-66352364 | Msa0369280:CDS | 40.0% | |
| TTAGGTGATGAAGAAGCTTG+GGG | + | chr3_1:66352347-66352366 | Msa0369280:CDS | 40.0% | |
| AAAGAAGTCCCTAGTTTGAG+AGG | + | chr3_1:66352371-66352390 | Msa0369280:CDS | 40.0% | |
| CGGTACTATAGCTGATTACA+AGG | + | chr3_1:66352394-66352413 | Msa0369280:CDS | 40.0% | |
| TGAAGATGATCTTAAGGAGG+AGG | + | chr3_1:66352528-66352547 | Msa0369280:CDS | 40.0% | |
| ! | CGCTTAATTGCTATTCATGC+CGG | + | chr3_1:66352604-66352623 | Msa0369280:CDS | 40.0% |
| ! | GCTTAATTGCTATTCATGCC+GGG | + | chr3_1:66352605-66352624 | Msa0369280:CDS | 40.0% |
| CATTCCACTATTCCACCTTT+AGG | - | chr3_1:66352634-66352653 | None:intergenic | 40.0% | |
| CTTAGACGTCTCACTTTATC+AGG | - | chr3_1:66352670-66352689 | None:intergenic | 40.0% | |
| GAAAAGGCTGCTGAAACATA+CGG | + | chr3_1:66352709-66352728 | Msa0369280:CDS | 40.0% | |
| !! | CTTTGGAACAAACACGTTAC+AGG | + | chr3_1:66352995-66353014 | Msa0369280:intron | 40.0% |
| TTGATCCTCTGATTGTTGAC+AGG | + | chr3_1:66353052-66353071 | Msa0369280:intron | 40.0% | |
| ATATTGCGAGTGTATCCGAA+AGG | + | chr3_1:66353090-66353109 | Msa0369280:CDS | 40.0% | |
| GATGGTTGCATTTAACATGC+AGG | + | chr3_1:66353170-66353189 | Msa0369280:CDS | 40.0% | |
| ! | AGATCTCTTTGGTTGATGCA+AGG | + | chr3_1:66353491-66353510 | Msa0369280:CDS | 40.0% |
| ! | GGAATGTTTAAAGCCAATGG+AGG | + | chr3_1:66353512-66353531 | Msa0369280:CDS | 40.0% |
| ! | TTTAAAGCCAATGGAGGATG+CGG | + | chr3_1:66353518-66353537 | Msa0369280:CDS | 40.0% |
| GAAAACTGGTCCCATTAATG+AGG | + | chr3_1:66353568-66353587 | Msa0369280:CDS | 40.0% | |
| TTCGATGGCAAATGAGCTTT+AGG | - | chr3_1:66353602-66353621 | None:intergenic | 40.0% | |
| GCCATCGAAAACTACTTTGA+AGG | + | chr3_1:66353613-66353632 | Msa0369280:CDS | 40.0% | |
| ! | CGAAAACTACTTTGAAGGTG+AGG | + | chr3_1:66353618-66353637 | Msa0369280:intron | 40.0% |
| ! | AATGACTTTTACAAGGGGCA+AGG | + | chr3_1:66353665-66353684 | Msa0369280:intron | 40.0% |
| ! | ATGACTTTTACAAGGGGCAA+GGG | + | chr3_1:66353666-66353685 | Msa0369280:intron | 40.0% |
| GTGACTGTATATATGGGAGA+AGG | + | chr3_1:66353765-66353784 | Msa0369280:CDS | 40.0% | |
| CTGTATATATGGGAGAAGGA+TGG | + | chr3_1:66353769-66353788 | Msa0369280:CDS | 40.0% | |
| TCGAATACCTCATTCCAAGA+AGG | - | chr3_1:66354361-66354380 | None:intergenic | 40.0% | |
| TGAGTATGACATGTCTGAGA+AGG | + | chr3_1:66354429-66354448 | Msa0369280:CDS | 40.0% | |
| ATGTCTGAGAAGGATGACTT+TGG | + | chr3_1:66354439-66354458 | Msa0369280:CDS | 40.0% | |
| ATTCCATTACATTCGCGCAA+AGG | + | chr3_1:66354511-66354530 | Msa0369280:CDS | 40.0% | |
| ! | AGCTGTGTCTCATTGTGTTT+TGG | + | chr3_1:66354807-66354826 | Msa0369280:three_prime_UTR | 40.0% |
| CGTGTGAGTTCTGTGTTTAG+AGG | - | chr3_1:66350200-66350219 | None:intergenic | 45.0% | |
| ! | GTGTTCGTGTGATCGTGTTT+TGG | - | chr3_1:66350229-66350248 | None:intergenic | 45.0% |
| ACTAACTACCAATAAGCGCG+TGG | - | chr3_1:66350251-66350270 | None:intergenic | 45.0% | |
| CCAATACGCCGAGTTTAAAC+CGG | - | chr3_1:66350435-66350454 | None:intergenic | 45.0% | |
| GTTTAAACTCGGCGTATTGG+AGG | + | chr3_1:66350435-66350454 | Msa0369280:CDS | 45.0% | |
| TAAAGCTCCTTTATCTCCGG+CGG | - | chr3_1:66350463-66350482 | None:intergenic | 45.0% | |
| ATCGTTACTCCGATGAAGGA+GGG | + | chr3_1:66350485-66350504 | Msa0369280:CDS | 45.0% | |
| TGTCATGATCCCTCCTTCAT+CGG | - | chr3_1:66350497-66350516 | None:intergenic | 45.0% | |
| CCTCAATCAGAAAGCTTCTC+AGG | - | chr3_1:66350528-66350547 | None:intergenic | 45.0% | |
| CCTGAGAAGCTTTCTGATTG+AGG | + | chr3_1:66350525-66350544 | Msa0369280:CDS | 45.0% | |
| AAAAGGATTACCCCAGTGGA+AGG | - | chr3_1:66350694-66350713 | None:intergenic | 45.0% | |
| ! | CTGAAGTGCTTTGGTGATAG+GGG | - | chr3_1:66351739-66351758 | None:intergenic | 45.0% |
| !! | CTCTGAAGTGCTTTGGTGAT+AGG | - | chr3_1:66351741-66351760 | None:intergenic | 45.0% |
| ! | ATCACCAAAGCACTTCAGAG+AGG | + | chr3_1:66351741-66351760 | Msa0369280:CDS | 45.0% |
| !! | AACACCTCTCTGAAGTGCTT+TGG | - | chr3_1:66351748-66351767 | None:intergenic | 45.0% |
| !! | AAGCACTTCAGAGAGGTGTT+AGG | + | chr3_1:66351748-66351767 | Msa0369280:CDS | 45.0% |
| !! | AGCACTTCAGAGAGGTGTTA+GGG | + | chr3_1:66351749-66351768 | Msa0369280:CDS | 45.0% |
| CTTCGTTGCGTCAGAATATC+CGG | + | chr3_1:66351982-66352001 | Msa0369280:CDS | 45.0% | |
| CCTGAAGATCAGGAGTAAGA+TGG | - | chr3_1:66352027-66352046 | None:intergenic | 45.0% | |
| CCATCTTACTCCTGATCTTC+AGG | + | chr3_1:66352024-66352043 | Msa0369280:CDS | 45.0% | |
| GTAACTAACCTGAGCCACTT+TGG | - | chr3_1:66352050-66352069 | None:intergenic | 45.0% | |
| ! | AGTGGCTCAGGTTAGTTACT+TGG | + | chr3_1:66352051-66352070 | Msa0369280:intron | 45.0% |
| TCCTACCTCAGAAACCTTGA+AGG | + | chr3_1:66352208-66352227 | Msa0369280:CDS | 45.0% | |
| !! | TCCTTCAAGGTTTCTGAGGT+AGG | - | chr3_1:66352212-66352231 | None:intergenic | 45.0% |
| GGAAAATGAGGAACCACAGA+AGG | + | chr3_1:66352316-66352335 | Msa0369280:CDS | 45.0% | |
| TAGTACCGCCTCTCAAACTA+GGG | - | chr3_1:66352382-66352401 | None:intergenic | 45.0% | |
| ATAGTACCGCCTCTCAAACT+AGG | - | chr3_1:66352383-66352402 | None:intergenic | 45.0% | |
| GGAGGAAGATTCTGATGAAG+CGG | + | chr3_1:66352546-66352565 | Msa0369280:CDS | 45.0% | |
| TATTCCACCTTTAGGCTTCC+CGG | - | chr3_1:66352626-66352645 | None:intergenic | 45.0% | |
| GAAGCCTAAAGGTGGAATAG+TGG | + | chr3_1:66352627-66352646 | Msa0369280:CDS | 45.0% | |
| AAGTGAGTCACAGCTCGAAA+AGG | + | chr3_1:66352693-66352712 | Msa0369280:CDS | 45.0% | |
| GAATCAAGAGCCAATGCAAC+AGG | - | chr3_1:66352810-66352829 | None:intergenic | 45.0% | |
| GTGAACCTGTCAACAATCAG+AGG | - | chr3_1:66353060-66353079 | None:intergenic | 45.0% | |
| GAGGTAATGCGTGTACCTTT+CGG | - | chr3_1:66353108-66353127 | None:intergenic | 45.0% | |
| CCATGCATCCACCCAATTAA+TGG | - | chr3_1:66353144-66353163 | None:intergenic | 45.0% | |
| CCATTAATTGGGTGGATGCA+TGG | + | chr3_1:66353141-66353160 | Msa0369280:CDS | 45.0% | |
| TCTTGACTTTCACTGTGGTG+AGG | + | chr3_1:66353324-66353343 | Msa0369280:intron | 45.0% | |
| !! | TTTTGCTGTGGGTGGTTCTT+TGG | + | chr3_1:66353456-66353475 | Msa0369280:intron | 45.0% |
| TGGTTCTTTGGCAGGGTTAT+GGG | + | chr3_1:66353468-66353487 | Msa0369280:intron | 45.0% | |
| AGGGTTATGGGAGATCTCTT+TGG | + | chr3_1:66353480-66353499 | Msa0369280:intron | 45.0% | |
| AACAAAACCGCATCCTCCAT+TGG | - | chr3_1:66353528-66353547 | None:intergenic | 45.0% | |
| ACCTCCAGACTTCTATGCAA+GGG | + | chr3_1:66353830-66353849 | Msa0369280:CDS | 45.0% | |
| CATACCCTTGCATAGAAGTC+TGG | - | chr3_1:66353837-66353856 | None:intergenic | 45.0% | |
| ! | CTTATGCAGGTTGGAATTGC+TGG | + | chr3_1:66354280-66354299 | Msa0369280:intron | 45.0% |
| AGGATAGTTGGTTGCCTTCT+TGG | + | chr3_1:66354344-66354363 | Msa0369280:CDS | 45.0% | |
| TTGGTTGCCTTCTTGGAATG+AGG | + | chr3_1:66354351-66354370 | Msa0369280:CDS | 45.0% | |
| CGAATTCCCACTTTCAGTTC+CGG | + | chr3_1:66354378-66354397 | Msa0369280:CDS | 45.0% | |
| TCTGAGAAGGATGACTTTGG+TGG | + | chr3_1:66354442-66354461 | Msa0369280:CDS | 45.0% | |
| CCAAACATGCTTACCTGTGT+GGG | + | chr3_1:66354465-66354484 | Msa0369280:CDS | 45.0% | |
| TCTCCTTTGCGCGAATGTAA+TGG | - | chr3_1:66354517-66354536 | None:intergenic | 45.0% | |
| !! | TATTAAATTAAATTTGTAAA+TGG | + | chr3_1:66350845-66350864 | Msa0369280:intron | 5.0% |
| ! | ACAGCGTATGTTTCTGCTGC+CGG | + | chr3_1:66350407-66350426 | Msa0369280:CDS | 50.0% |
| CCGGTTTAAACTCGGCGTAT+TGG | + | chr3_1:66350432-66350451 | Msa0369280:CDS | 50.0% | |
| CATCGTTACTCCGATGAAGG+AGG | + | chr3_1:66350484-66350503 | Msa0369280:CDS | 50.0% | |
| CTCCTCTCTTACCTTCCACT+GGG | + | chr3_1:66350680-66350699 | Msa0369280:CDS | 50.0% | |
| TCCTCTCTTACCTTCCACTG+GGG | + | chr3_1:66350681-66350700 | Msa0369280:CDS | 50.0% | |
| CGGATATTCTGACGCAACGA+AGG | - | chr3_1:66351984-66352003 | None:intergenic | 50.0% | |
| TCCTGATCTTCAGGCCAAAG+TGG | + | chr3_1:66352033-66352052 | Msa0369280:CDS | 50.0% | |
| CATATCAACCAAGCCGCCTA+AGG | + | chr3_1:66352268-66352287 | Msa0369280:CDS | 50.0% | |
| ! | GCTTCAAGGTACTCCTTAGG+CGG | - | chr3_1:66352284-66352303 | None:intergenic | 50.0% |
| CCTAAAGGCTTTCCCTTCTG+TGG | - | chr3_1:66352332-66352351 | None:intergenic | 50.0% | |
| CCACAGAAGGGAAAGCCTTT+AGG | + | chr3_1:66352329-66352348 | Msa0369280:CDS | 50.0% | |
| GAAGTCCCTAGTTTGAGAGG+CGG | + | chr3_1:66352374-66352393 | Msa0369280:CDS | 50.0% | |
| ATTCATGCCGGGAAGCCTAA+AGG | + | chr3_1:66352616-66352635 | Msa0369280:CDS | 50.0% | |
| GAAACCTGTGAGGTCTAGCA+CGG | + | chr3_1:66353231-66353250 | Msa0369280:intron | 50.0% | |
| GTGGTTCTTTGGCAGGGTTA+TGG | + | chr3_1:66353467-66353486 | Msa0369280:intron | 50.0% | |
| CACCTCCAGACTTCTATGCA+AGG | + | chr3_1:66353829-66353848 | Msa0369280:CDS | 50.0% | |
| ACCCTTGCATAGAAGTCTGG+AGG | - | chr3_1:66353834-66353853 | None:intergenic | 50.0% | |
| GCCAAACATGCTTACCTGTG+TGG | + | chr3_1:66354464-66354483 | Msa0369280:CDS | 50.0% | |
| CCCACACAGGTAAGCATGTT+TGG | - | chr3_1:66354468-66354487 | None:intergenic | 50.0% | |
| CCACTTCTTAGTTCCCACAC+AGG | - | chr3_1:66354481-66354500 | None:intergenic | 50.0% | |
| CCTGTGTGGGAACTAAGAAG+TGG | + | chr3_1:66354478-66354497 | Msa0369280:CDS | 50.0% | |
| CACGAACACCACGCGCTTAT+TGG | + | chr3_1:66350240-66350259 | Msa0369280:five_prime_UTR | 55.0% | |
| CCAGTGGAAGGTAAGAGAGG+AGG | - | chr3_1:66350682-66350701 | None:intergenic | 55.0% | |
| CCTCCTCTCTTACCTTCCAC+TGG | + | chr3_1:66350679-66350698 | Msa0369280:CDS | 55.0% | |
| ACCCCAGTGGAAGGTAAGAG+AGG | - | chr3_1:66350685-66350704 | None:intergenic | 55.0% | |
| CAGGACATTGACGACTCCTG+TGG | + | chr3_1:66351922-66351941 | Msa0369280:intron | 55.0% | |
| ! | GCCACTTTGGCCTGAAGATC+AGG | - | chr3_1:66352037-66352056 | None:intergenic | 55.0% |
| TCTTCAGGCCAAAGTGGCTC+AGG | + | chr3_1:66352039-66352058 | Msa0369280:CDS | 55.0% | |
| ! | AAGGTACTCCTTAGGCGGCT+TGG | - | chr3_1:66352279-66352298 | None:intergenic | 55.0% |
| GTGGATGCATGGAGCTCAGA+TGG | + | chr3_1:66353152-66353171 | Msa0369280:CDS | 55.0% | |
| GTATCCGTGCTAGACCTCAC+AGG | - | chr3_1:66353238-66353257 | None:intergenic | 55.0% | |
| CTGTGGGTGGTTCTTTGGCA+GGG | + | chr3_1:66353461-66353480 | Msa0369280:intron | 55.0% | |
| CCAGCTCCGGAACTGAAAGT+GGG | - | chr3_1:66354387-66354406 | None:intergenic | 55.0% | |
| ! | TATGTTTCTGCTGCCGGCGC+CGG | + | chr3_1:66350413-66350432 | Msa0369280:CDS | 60.0% |
| !! | TGCCGGCGCCGGTTTAAACT+CGG | + | chr3_1:66350424-66350443 | Msa0369280:CDS | 60.0% |
| CATGCCGGGAAGCCTAAAGG+TGG | + | chr3_1:66352619-66352638 | Msa0369280:CDS | 60.0% | |
| GCTGTGGGTGGTTCTTTGGC+AGG | + | chr3_1:66353460-66353479 | Msa0369280:intron | 60.0% | |
| CCCACTTTCAGTTCCGGAGC+TGG | + | chr3_1:66354384-66354403 | Msa0369280:CDS | 60.0% | |
| GCCAGCTCCGGAACTGAAAG+TGG | - | chr3_1:66354388-66354407 | None:intergenic | 60.0% | |
| CGCCGAGTTTAAACCGGCGC+CGG | - | chr3_1:66350429-66350448 | None:intergenic | 65.0% | |
| !! | GGAGGCACCGCCGGAGATAA+AGG | + | chr3_1:66350453-66350472 | Msa0369280:CDS | 65.0% |
| ATGCGAAGCAGCGCCAGCTC+CGG | - | chr3_1:66354400-66354419 | None:intergenic | 65.0% | |
| !! | CGGCGTATTGGAGGCACCGC+CGG | + | chr3_1:66350444-66350463 | Msa0369280:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 66350140 | 66354862 | 66350140 | ID=Msa0369280;Name=Msa0369280 |
| chr3_1 | mRNA | 66350140 | 66354862 | 66350140 | ID=Msa0369280-mRNA-1;Parent=Msa0369280;Name=Msa0369280-mRNA-1;_AED=0.26;_eAED=0.26;_QI=239|1|1|1|1|1|9|280|595 |
| chr3_1 | exon | 66350140 | 66350702 | 66350140 | ID=Msa0369280-mRNA-1:exon:13454;Parent=Msa0369280-mRNA-1 |
| chr3_1 | exon | 66351636 | 66351832 | 66351636 | ID=Msa0369280-mRNA-1:exon:13455;Parent=Msa0369280-mRNA-1 |
| chr3_1 | exon | 66351925 | 66352060 | 66351925 | ID=Msa0369280-mRNA-1:exon:13456;Parent=Msa0369280-mRNA-1 |
| chr3_1 | exon | 66352173 | 66352415 | 66352173 | ID=Msa0369280-mRNA-1:exon:13457;Parent=Msa0369280-mRNA-1 |
| chr3_1 | exon | 66352511 | 66352746 | 66352511 | ID=Msa0369280-mRNA-1:exon:13458;Parent=Msa0369280-mRNA-1 |
| chr3_1 | exon | 66353074 | 66353191 | 66353074 | ID=Msa0369280-mRNA-1:exon:13459;Parent=Msa0369280-mRNA-1 |
| chr3_1 | exon | 66353482 | 66353634 | 66353482 | ID=Msa0369280-mRNA-1:exon:13460;Parent=Msa0369280-mRNA-1 |
| chr3_1 | exon | 66353765 | 66353851 | 66353765 | ID=Msa0369280-mRNA-1:exon:13461;Parent=Msa0369280-mRNA-1 |
| chr3_1 | exon | 66354289 | 66354862 | 66354289 | ID=Msa0369280-mRNA-1:exon:13462;Parent=Msa0369280-mRNA-1 |
| chr3_1 | five_prime_UTR | 66350140 | 66350378 | 66350140 | ID=Msa0369280-mRNA-1:five_prime_utr;Parent=Msa0369280-mRNA-1 |
| chr3_1 | CDS | 66350379 | 66350702 | 66350379 | ID=Msa0369280-mRNA-1:cds;Parent=Msa0369280-mRNA-1 |
| chr3_1 | CDS | 66351636 | 66351832 | 66351636 | ID=Msa0369280-mRNA-1:cds;Parent=Msa0369280-mRNA-1 |
| chr3_1 | CDS | 66351925 | 66352060 | 66351925 | ID=Msa0369280-mRNA-1:cds;Parent=Msa0369280-mRNA-1 |
| chr3_1 | CDS | 66352173 | 66352415 | 66352173 | ID=Msa0369280-mRNA-1:cds;Parent=Msa0369280-mRNA-1 |
| chr3_1 | CDS | 66352511 | 66352746 | 66352511 | ID=Msa0369280-mRNA-1:cds;Parent=Msa0369280-mRNA-1 |
| chr3_1 | CDS | 66353074 | 66353191 | 66353074 | ID=Msa0369280-mRNA-1:cds;Parent=Msa0369280-mRNA-1 |
| chr3_1 | CDS | 66353482 | 66353634 | 66353482 | ID=Msa0369280-mRNA-1:cds;Parent=Msa0369280-mRNA-1 |
| chr3_1 | CDS | 66353765 | 66353851 | 66353765 | ID=Msa0369280-mRNA-1:cds;Parent=Msa0369280-mRNA-1 |
| chr3_1 | CDS | 66354289 | 66354582 | 66354289 | ID=Msa0369280-mRNA-1:cds;Parent=Msa0369280-mRNA-1 |
| chr3_1 | three_prime_UTR | 66354583 | 66354862 | 66354583 | ID=Msa0369280-mRNA-1:three_prime_utr;Parent=Msa0369280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
