Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0463310 | XP_003600904.1 | 96.975 | 595 | 16 | 1 | 1 | 595 | 1 | 593 | 0.0 | 1201 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0463310 | sp|Q39033|PLCD2_ARATH | 70.339 | 590 | 163 | 6 | 7 | 595 | 3 | 581 | 0.0 | 861 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0463310 | Q93YX8 | 96.975 | 595 | 16 | 1 | 1 | 595 | 1 | 593 | 0.0 | 1201 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0369280 | Msa0463310 | 0.954366 | 3.477121e-112 | -8.615850e-47 |
| Msa0463310 | Msa0463340 | 0.812134 | 4.938591e-51 | -8.615850e-47 |
| Msa0463310 | Msa0508930 | 0.870456 | 1.439480e-66 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0463310 | MtrunA17_Chr3g0113531 | 96.975 | 595 | 16 | 1 | 1 | 595 | 1 | 593 | 0.0 | 1201 |
| Msa0463310 | MtrunA17_Chr3g0112551 | 91.261 | 595 | 29 | 2 | 1 | 595 | 1 | 572 | 0.0 | 1018 |
| Msa0463310 | MtrunA17_Chr5g0437081 | 76.311 | 591 | 132 | 5 | 7 | 594 | 3 | 588 | 0.0 | 936 |
| Msa0463310 | MtrunA17_Chr5g0430181 | 63.484 | 597 | 203 | 7 | 9 | 595 | 3 | 594 | 0.0 | 775 |
| Msa0463310 | MtrunA17_Chr5g0437061 | 63.618 | 503 | 150 | 6 | 113 | 594 | 1 | 491 | 0.0 | 636 |
| Msa0463310 | MtrunA17_Chr5g0437041 | 51.667 | 600 | 255 | 8 | 18 | 594 | 19 | 606 | 0.0 | 603 |
| Msa0463310 | MtrunA17_Chr5g0430191 | 52.773 | 595 | 243 | 9 | 3 | 594 | 13 | 572 | 0.0 | 600 |
| Msa0463310 | MtrunA17_Chr3g0113521 | 51.224 | 572 | 260 | 8 | 30 | 594 | 27 | 586 | 0.0 | 575 |
| Msa0463310 | MtrunA17_Chr3g0113471 | 52.083 | 576 | 259 | 8 | 26 | 594 | 22 | 587 | 0.0 | 571 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0463310 | AT3G08510.2 | 70.339 | 590 | 163 | 6 | 7 | 595 | 3 | 581 | 0.0 | 861 |
| Msa0463310 | AT3G08510.1 | 70.339 | 590 | 163 | 6 | 7 | 595 | 3 | 581 | 0.0 | 861 |
| Msa0463310 | AT3G55940.1 | 67.230 | 592 | 181 | 7 | 7 | 595 | 3 | 584 | 0.0 | 808 |
| Msa0463310 | AT3G08510.4 | 66.271 | 590 | 158 | 7 | 7 | 595 | 3 | 552 | 0.0 | 788 |
| Msa0463310 | AT3G08510.3 | 66.271 | 590 | 158 | 7 | 7 | 595 | 3 | 552 | 0.0 | 788 |
| Msa0463310 | AT2G40116.1 | 60.753 | 558 | 198 | 7 | 44 | 594 | 69 | 612 | 0.0 | 684 |
| Msa0463310 | AT5G58700.3 | 56.551 | 603 | 248 | 7 | 1 | 595 | 1 | 597 | 0.0 | 679 |
| Msa0463310 | AT5G58700.1 | 56.551 | 603 | 248 | 7 | 1 | 595 | 1 | 597 | 0.0 | 679 |
| Msa0463310 | AT5G58700.2 | 63.673 | 490 | 171 | 4 | 109 | 595 | 4 | 489 | 0.0 | 635 |
| Msa0463310 | AT5G58690.3 | 52.333 | 600 | 245 | 7 | 9 | 595 | 7 | 578 | 0.0 | 629 |
| Msa0463310 | AT5G58690.1 | 52.333 | 600 | 245 | 7 | 9 | 595 | 7 | 578 | 0.0 | 629 |
| Msa0463310 | AT5G58690.2 | 53.688 | 583 | 228 | 8 | 27 | 595 | 5 | 559 | 0.0 | 620 |
| Msa0463310 | AT5G58670.1 | 52.641 | 587 | 245 | 4 | 7 | 592 | 2 | 556 | 0.0 | 612 |
| Msa0463310 | AT4G38530.1 | 49.915 | 587 | 258 | 7 | 8 | 592 | 3 | 555 | 0.0 | 577 |
| Msa0463310 | AT3G47290.1 | 39.961 | 513 | 245 | 11 | 84 | 594 | 79 | 530 | 2.79e-119 | 364 |
| Msa0463310 | AT3G47290.2 | 40.161 | 498 | 235 | 11 | 84 | 579 | 79 | 515 | 4.29e-115 | 355 |
| Msa0463310 | AT3G47220.1 | 36.318 | 592 | 297 | 14 | 17 | 594 | 5 | 530 | 1.45e-111 | 344 |
Find 167 sgRNAs with CRISPR-Local
Find 280 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAAATTATAATCCATTAAT+TGG | 0.072901 | 3_3:+62647895 | Msa0463310:CDS |
| CACGAACACCACGCGCTTAT+TGG | 0.162665 | 3_3:+62644998 | Msa0463310:five_prime_UTR |
| GGTATTTACATGAATATCTA+AGG | 0.226632 | 3_3:+62649462 | Msa0463310:three_prime_UTR |
| CAAATGTTTGACGTCTATTA+AGG | 0.230837 | 3_3:+62646720 | Msa0463310:CDS |
| CCATGCATCCACCCAATTAA+TGG | 0.240859 | 3_3:-62647907 | None:intergenic |
| AGGATCGAAAACCTCATTAA+TGG | 0.247589 | 3_3:-62648345 | None:intergenic |
| AGGATAGTTGGTTGCCTTCT+TGG | 0.250112 | 3_3:+62649110 | Msa0463310:CDS |
| ATAAGATGTGTCTCATGTTT+TGG | 0.251687 | 3_3:+62649570 | Msa0463310:three_prime_UTR |
| TGGTTCTTTGGCAGGGTTAT+GGG | 0.259926 | 3_3:+62648234 | Msa0463310:intron |
| TAATTAGGTGACTGTATATA+TGG | 0.261260 | 3_3:+62648524 | Msa0463310:intron |
| GGTAGTCATCTGATGTATTT+TGG | 0.264168 | 3_3:-62647347 | None:intergenic |
| GTGGTTCTTTGGCAGGGTTA+TGG | 0.264327 | 3_3:+62648233 | Msa0463310:intron |
| CTTAGACGTCTCACTTTATC+AGG | 0.266369 | 3_3:-62647435 | None:intergenic |
| AGGGTTATGGGAGATCTCTT+TGG | 0.311117 | 3_3:+62648246 | Msa0463310:intron |
| CTTATGCAGGTTGGAATTGC+TGG | 0.313742 | 3_3:+62649046 | Msa0463310:intron |
| TTCGATGGCAAATGAGCTTT+AGG | 0.326162 | 3_3:-62648365 | None:intergenic |
| CCCACACAGGTAAGCATGTT+TGG | 0.326311 | 3_3:-62649231 | None:intergenic |
| TCAATAAAATAAACAGTATA+TGG | 0.328282 | 3_3:-62649421 | None:intergenic |
| CGAATTCCCACTTTCAGTTC+CGG | 0.328773 | 3_3:+62649144 | Msa0463310:CDS |
| ATCAAACAAAACACACTCTT+TGG | 0.339881 | 3_3:-62649526 | None:intergenic |
| TATTCCACCTTTAGGCTTCC+CGG | 0.346071 | 3_3:-62647391 | None:intergenic |
| CCATCTTACTCCTGATCTTC+AGG | 0.350102 | 3_3:+62646792 | Msa0463310:CDS |
| GGGTGATTGAATTGGATATA+TGG | 0.356065 | 3_3:+62646537 | Msa0463310:CDS |
| CTCTGAAGTGCTTTGATGAT+AGG | 0.362421 | 3_3:-62646506 | None:intergenic |
| CCTCCTCTCTTACCTTCCAC+TGG | 0.371999 | 3_3:+62645434 | Msa0463310:CDS |
| TAGATGGTTACTCAAACATT+TGG | 0.373406 | 3_3:+62646938 | Msa0463310:intron |
| CCACAGAAGGGAAAGCCTTT+AGG | 0.373754 | 3_3:+62647097 | Msa0463310:CDS |
| GGATCGAAAACCTCATTAAT+GGG | 0.374497 | 3_3:-62648344 | None:intergenic |
| CTTCGTTGCGTCAGAATATC+CGG | 0.378354 | 3_3:+62646750 | Msa0463310:CDS |
| AGGTGTTAGGGTGATTGAAT+TGG | 0.383680 | 3_3:+62646529 | Msa0463310:CDS |
| TATGTTTCTGCTGCCGGCGC+CGG | 0.387456 | 3_3:+62645168 | Msa0463310:CDS |
| CATTCCACTATTCCACCTTT+AGG | 0.387588 | 3_3:-62647399 | None:intergenic |
| AAGCACTTCAGAGAGGTGTT+AGG | 0.389332 | 3_3:+62646516 | Msa0463310:CDS |
| GCCACTTTGGCCTGAAGATC+AGG | 0.391390 | 3_3:-62646802 | None:intergenic |
| CCTCAGAAGCTTTCTGATTG+AGG | 0.391870 | 3_3:+62645280 | Msa0463310:CDS |
| GGTCATAATTCATATCTAAC+TGG | 0.395881 | 3_3:+62646452 | Msa0463310:CDS |
| GGAGGCACCGCCGGAGATAA+AGG | 0.396433 | 3_3:+62645208 | Msa0463310:CDS |
| GCCATCGAAAACTACTTTGA+AGG | 0.398900 | 3_3:+62648379 | Msa0463310:CDS |
| GTGTTCGTGTGATCGTGTTT+TGG | 0.402329 | 3_3:-62644984 | None:intergenic |
| CCCACTTTCAGTTCCGGAGC+TGG | 0.406381 | 3_3:+62649150 | Msa0463310:CDS |
| TTTAGGTGATGAAGAAGCTT+GGG | 0.407451 | 3_3:+62647114 | Msa0463310:CDS |
| GAAACACAAGCAATCATTGA+TGG | 0.412944 | 3_3:+62645332 | Msa0463310:CDS |
| AGGAGTAAGATGGTCTTCTA+AGG | 0.427795 | 3_3:-62646782 | None:intergenic |
| GATGATGTTGAAGTCCTTCA+TGG | 0.428848 | 3_3:+62646575 | Msa0463310:CDS |
| TCCTACCTCAGAAACCTTGA+AGG | 0.435352 | 3_3:+62646976 | Msa0463310:CDS |
| CAAAGTCAATAGAGGATAGT+TGG | 0.441950 | 3_3:+62649098 | Msa0463310:CDS |
| TCTCCTTTGCGCGAATGTAA+TGG | 0.444524 | 3_3:-62649280 | None:intergenic |
| CATACCCTTGCATAGAAGTC+TGG | 0.448430 | 3_3:-62648600 | None:intergenic |
| AGTTTCTTCAAGTTTCTCTT+CGG | 0.450799 | 3_3:+62645401 | Msa0463310:CDS |
| TCTTCTAAGGTTATTACAAC+CGG | 0.454332 | 3_3:-62646769 | None:intergenic |
| CAAATTATAATCCATTAATT+GGG | 0.455647 | 3_3:+62647896 | Msa0463310:CDS |
| ATGCGAAGCAGCGCCAGCTC+CGG | 0.456222 | 3_3:-62649163 | None:intergenic |
| CCGGTTTAAACTCGGCGTAT+TGG | 0.456988 | 3_3:+62645187 | Msa0463310:CDS |
| CTCCTCTCTTACCTTCCACT+GGG | 0.458800 | 3_3:+62645435 | Msa0463310:CDS |
| CGCTTAATTGCTATTCATGC+CGG | 0.460356 | 3_3:+62647372 | Msa0463310:CDS |
| TCTGAAGTGCTTTGATGATA+GGG | 0.461852 | 3_3:-62646505 | None:intergenic |
| AAGGTACTCCTTAGGCGGCT+TGG | 0.465613 | 3_3:-62647044 | None:intergenic |
| CCAATACGCCGAGTTTAAAC+CGG | 0.473188 | 3_3:-62645187 | None:intergenic |
| ATAGTACCGCCTCTCAAACT+AGG | 0.474142 | 3_3:-62647148 | None:intergenic |
| CATACGGAAAAGAAATTGTC+AGG | 0.475072 | 3_3:+62647493 | Msa0463310:CDS |
| CCTAAAGGCTTTCCCTTCTG+TGG | 0.479774 | 3_3:-62647097 | None:intergenic |
| GAGGTAATGCGTGTACCTTT+CGG | 0.479808 | 3_3:-62647871 | None:intergenic |
| ATATTCATGTAAATACCATA+AGG | 0.480321 | 3_3:-62649456 | None:intergenic |
| GTTTAAACTCGGCGTATTGG+AGG | 0.484480 | 3_3:+62645190 | Msa0463310:CDS |
| ACTCTTGCGTTATAATGTAA+TGG | 0.486009 | 3_3:-62649383 | None:intergenic |
| AACAAAACCGCATCCTCCAT+TGG | 0.486065 | 3_3:-62648291 | None:intergenic |
| CCATTAATTGGGTGGATGCA+TGG | 0.487420 | 3_3:+62647907 | Msa0463310:CDS |
| TGTTGATGAAGATGATCTTA+AGG | 0.488941 | 3_3:+62647290 | Msa0463310:CDS |
| CGTGTGAGTTCTGTGTTTAG+AGG | 0.489330 | 3_3:-62644955 | None:intergenic |
| TCTTCAGGCCAAAGTGGCTC+AGG | 0.489930 | 3_3:+62646807 | Msa0463310:CDS |
| GCCAGCTCCGGAACTGAAAG+TGG | 0.492825 | 3_3:-62649151 | None:intergenic |
| GAAAACTGGTCCCATTAATG+AGG | 0.492864 | 3_3:+62648334 | Msa0463310:CDS |
| GATGGTTGCATTTAACATGC+AGG | 0.494100 | 3_3:+62647936 | Msa0463310:CDS |
| CAAGCTTCTTCATCACCTAA+AGG | 0.494465 | 3_3:-62647112 | None:intergenic |
| AAGGACTTCAACATCATCCT+TGG | 0.496121 | 3_3:-62646570 | None:intergenic |
| TTGGTTGCCTTCTTGGAATG+AGG | 0.497276 | 3_3:+62649117 | Msa0463310:CDS |
| TATCATCGTTACTCCGATGA+AGG | 0.497606 | 3_3:+62645236 | Msa0463310:CDS |
| CTTTAGGTGATGAAGAAGCT+TGG | 0.501759 | 3_3:+62647113 | Msa0463310:CDS |
| GGAAAATGAGGAACCACAGA+AGG | 0.504129 | 3_3:+62647084 | Msa0463310:CDS |
| ACATCATCCTTGGAGTCATT+AGG | 0.504800 | 3_3:-62646560 | None:intergenic |
| TATTCATGTAAATACCATAA+GGG | 0.509556 | 3_3:-62649455 | None:intergenic |
| TAATCGGATATGAAGGGGAA+TGG | 0.512501 | 3_3:-62644905 | None:intergenic |
| TCCTTCAAGGTTTCTGAGGT+AGG | 0.514356 | 3_3:-62646977 | None:intergenic |
| AAAAGACGAAAAGGAAAATG+AGG | 0.515925 | 3_3:+62647072 | Msa0463310:CDS |
| AGCACTTCAGAGAGGTGTTA+GGG | 0.516302 | 3_3:+62646517 | Msa0463310:CDS |
| CGGTACTATAGCTGATTACA+AGG | 0.516593 | 3_3:+62647162 | Msa0463310:CDS |
| CGGCGTATTGGAGGCACCGC+CGG | 0.517697 | 3_3:+62645199 | Msa0463310:CDS |
| GTAACTAACCTGAGCCACTT+TGG | 0.519283 | 3_3:-62646815 | None:intergenic |
| CAAGGAATGTTTAAAGCCAA+TGG | 0.521167 | 3_3:+62648275 | Msa0463310:CDS |
| GAAGCCTAAAGGTGGAATAG+TGG | 0.521864 | 3_3:+62647395 | Msa0463310:CDS |
| CCTTGAAGCAAAAGACGAAA+AGG | 0.523072 | 3_3:+62647063 | Msa0463310:CDS |
| TGCCGGCGCCGGTTTAAACT+CGG | 0.525526 | 3_3:+62645179 | Msa0463310:CDS |
| TCACATTATTACATATTCAC+CGG | 0.529900 | 3_3:+62646431 | Msa0463310:CDS |
| AGGTGAAGGAAATTCCTTCA+AGG | 0.530092 | 3_3:-62646990 | None:intergenic |
| AATTAGGTGACTGTATATAT+GGG | 0.530266 | 3_3:+62648525 | Msa0463310:intron |
| TGAAGATGATCTTAAGGAGG+AGG | 0.532033 | 3_3:+62647296 | Msa0463310:CDS |
| CATATCAACCAAGCCGCCTA+AGG | 0.532591 | 3_3:+62647036 | Msa0463310:CDS |
| TTTGCTTCAAGGTACTCCTT+AGG | 0.533133 | 3_3:-62647052 | None:intergenic |
| ATTATAATCCATTAATTGGG+TGG | 0.536189 | 3_3:+62647899 | Msa0463310:CDS |
| ACAGCGTATGTTTCTGCTGC+CGG | 0.536369 | 3_3:+62645162 | Msa0463310:CDS |
| ATTCATGCCGGGAAGCCTAA+AGG | 0.537834 | 3_3:+62647384 | Msa0463310:CDS |
| TGTCATGATCCCTCCTTCAT+CGG | 0.537909 | 3_3:-62645249 | None:intergenic |
| CGCCGAGTTTAAACCGGCGC+CGG | 0.546706 | 3_3:-62645181 | None:intergenic |
| TTTAAAGCCAATGGAGGATG+CGG | 0.547215 | 3_3:+62648284 | Msa0463310:CDS |
| AAGTGAGTCACAGCTCGAAA+AGG | 0.551984 | 3_3:+62647461 | Msa0463310:CDS |
| GCTTAATTGCTATTCATGCC+GGG | 0.555867 | 3_3:+62647373 | Msa0463310:CDS |
| CGGATATTCTGACGCAACGA+AGG | 0.555918 | 3_3:-62646749 | None:intergenic |
| CCTCAATCAGAAAGCTTCTG+AGG | 0.557081 | 3_3:-62645280 | None:intergenic |
| TGATAAAGCTCCTTTATCTC+CGG | 0.557185 | 3_3:-62645218 | None:intergenic |
| TAGTACCGCCTCTCAAACTA+GGG | 0.558608 | 3_3:-62647147 | None:intergenic |
| ACAATGGTAAACTCATATCT+TGG | 0.558961 | 3_3:-62646409 | None:intergenic |
| TAATGGATTATAATTTGATG+AGG | 0.561590 | 3_3:-62647890 | None:intergenic |
| GTGGATGCATGGAGCTCAGA+TGG | 0.561990 | 3_3:+62647918 | Msa0463310:CDS |
| GTGTGAGAATAATGTATTGG+TGG | 0.563500 | 3_3:+62649485 | Msa0463310:three_prime_UTR |
| TTGAGTATCTTTCATCGTAG+AGG | 0.565571 | 3_3:+62645365 | Msa0463310:CDS |
| TCCTGATCTTCAGGCCAAAG+TGG | 0.568046 | 3_3:+62646801 | Msa0463310:CDS |
| ATCGTTACTCCGATGAAGGA+GGG | 0.568712 | 3_3:+62645240 | Msa0463310:CDS |
| GAAAAGGCTGCTGAAACATA+CGG | 0.572490 | 3_3:+62647477 | Msa0463310:CDS |
| GCTTCAAGGTACTCCTTAGG+CGG | 0.576983 | 3_3:-62647049 | None:intergenic |
| CTGAAGTGCTTTGATGATAG+GGG | 0.578401 | 3_3:-62646504 | None:intergenic |
| ATTCCATTACATTCGCGCAA+AGG | 0.578536 | 3_3:+62649277 | Msa0463310:CDS |
| CCTGAAGATCAGGAGTAAGA+TGG | 0.584011 | 3_3:-62646792 | None:intergenic |
| AGATCTCTTTGGTTGATGCA+AGG | 0.584104 | 3_3:+62648257 | Msa0463310:CDS |
| AAAAGGATTACCCCAGTGGA+AGG | 0.585997 | 3_3:-62645446 | None:intergenic |
| TCGAATACCTCATTCCAAGA+AGG | 0.587279 | 3_3:-62649124 | None:intergenic |
| GTATTTACATGAATATCTAA+GGG | 0.588101 | 3_3:+62649463 | Msa0463310:three_prime_UTR |
| CATCGTTACTCCGATGAAGG+AGG | 0.593498 | 3_3:+62645239 | Msa0463310:CDS |
| ACCCCAGTGGAAGGTAAGAG+AGG | 0.593533 | 3_3:-62645437 | None:intergenic |
| GTGACTGTATATATGGGAGA+AGG | 0.593969 | 3_3:+62648531 | Msa0463310:CDS |
| GGTAAACTTACATTCCATGA+AGG | 0.594580 | 3_3:-62646589 | None:intergenic |
| AGGGTGTGAGAATAATGTAT+TGG | 0.595337 | 3_3:+62649482 | Msa0463310:three_prime_UTR |
| CTGTATATATGGGAGAAGGA+TGG | 0.596370 | 3_3:+62648535 | Msa0463310:CDS |
| CACCTCCAGACTTCTATGCA+AGG | 0.598961 | 3_3:+62648595 | Msa0463310:CDS |
| AGTTAGATATGAATTATGAC+CGG | 0.599354 | 3_3:-62646450 | None:intergenic |
| TTCTATCTTTAGCAAAACAG+TGG | 0.603639 | 3_3:+62647267 | Msa0463310:intron |
| AAATTCCTTCAAGGTTTCTG+AGG | 0.606668 | 3_3:-62646981 | None:intergenic |
| ACCTCCAGACTTCTATGCAA+GGG | 0.606755 | 3_3:+62648596 | Msa0463310:CDS |
| GGAGGAAGATTCTGATGAAG+CGG | 0.606856 | 3_3:+62647314 | Msa0463310:CDS |
| GAAAATGAGGAACCACAGAA+GGG | 0.607163 | 3_3:+62647085 | Msa0463310:CDS |
| CCAAACATGCTTACCTGTGT+GGG | 0.607645 | 3_3:+62649231 | Msa0463310:CDS |
| TGATGAAGATGATCTTAAGG+AGG | 0.607713 | 3_3:+62647293 | Msa0463310:CDS |
| AAAGAAGTCCCTAGTTTGAG+AGG | 0.608524 | 3_3:+62647139 | Msa0463310:CDS |
| AAACATTTGATAAGTGCCAC+AGG | 0.609405 | 3_3:-62646706 | None:intergenic |
| CCTGTGTGGGAACTAAGAAG+TGG | 0.609701 | 3_3:+62649244 | Msa0463310:CDS |
| AATATGTAATAATGTGACAA+TGG | 0.610020 | 3_3:-62646425 | None:intergenic |
| TATATGGCCTAATGACTCCA+AGG | 0.611089 | 3_3:+62646553 | Msa0463310:CDS |
| TCTGAGAAGGATGACTTTGG+TGG | 0.635751 | 3_3:+62649208 | Msa0463310:CDS |
| CCAGTGGAAGGTAAGAGAGG+AGG | 0.636569 | 3_3:-62645434 | None:intergenic |
| CAGGACATTGACGACTCCTG+TGG | 0.642402 | 3_3:+62646690 | Msa0463310:intron |
| CCACTTCTTAGTTCCCACAC+AGG | 0.642948 | 3_3:-62649244 | None:intergenic |
| TAAAGCTCCTTTATCTCCGG+CGG | 0.645354 | 3_3:-62645215 | None:intergenic |
| ACCCTTGCATAGAAGTCTGG+AGG | 0.646972 | 3_3:-62648597 | None:intergenic |
| TGAGTATGACATGTCTGAGA+AGG | 0.650839 | 3_3:+62649195 | Msa0463310:CDS |
| CCAGCTCCGGAACTGAAAGT+GGG | 0.652112 | 3_3:-62649150 | None:intergenic |
| TTAGGTGATGAAGAAGCTTG+GGG | 0.654802 | 3_3:+62647115 | Msa0463310:CDS |
| ATGTCTGAGAAGGATGACTT+TGG | 0.654831 | 3_3:+62649205 | Msa0463310:CDS |
| AATAGTGGAATGTCTCAAAG+TGG | 0.664523 | 3_3:+62647410 | Msa0463310:CDS |
| GCCAAACATGCTTACCTGTG+TGG | 0.670365 | 3_3:+62649230 | Msa0463310:CDS |
| CATGAATAGCAATTAAGCGT+CGG | 0.671424 | 3_3:-62647368 | None:intergenic |
| CTGTACAAAATATATATCAG+AGG | 0.673312 | 3_3:-62649360 | None:intergenic |
| GGAATGTTTAAAGCCAATGG+AGG | 0.677096 | 3_3:+62648278 | Msa0463310:CDS |
| ATATTGCGAGTGTATCCGAA+AGG | 0.679225 | 3_3:+62647856 | Msa0463310:CDS |
| GAAGTCCCTAGTTTGAGAGG+CGG | 0.688180 | 3_3:+62647142 | Msa0463310:CDS |
| CATGCCGGGAAGCCTAAAGG+TGG | 0.692926 | 3_3:+62647387 | Msa0463310:CDS |
| TCCTCTCTTACCTTCCACTG+GGG | 0.713044 | 3_3:+62645436 | Msa0463310:CDS |
| ACTAACTACCAATAAGCGCG+TGG | 0.713291 | 3_3:-62645006 | None:intergenic |
| ATCATCAAAGCACTTCAGAG+AGG | 0.714493 | 3_3:+62646509 | Msa0463310:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTATTTTTAATTTTAAT+CGG | - | chr3_3:62644924-62644943 | None:intergenic | 0.0% |
| !!! | TTTTTTGATAAATCAATTTT+GGG | - | chr3_3:62646146-62646165 | None:intergenic | 10.0% |
| !!! | ATTTTTTGATAAATCAATTT+TGG | - | chr3_3:62646147-62646166 | None:intergenic | 10.0% |
| !! | AGCAAAAATAAATATATTAA+TGG | - | chr3_3:62648209-62648228 | None:intergenic | 10.0% |
| !! | ACTACAAACAAAAAAAAAAA+AGG | - | chr3_3:62645466-62645485 | None:intergenic | 15.0% |
| !!! | ATTTGATTGTGTTTTTTTTT+TGG | + | chr3_3:62645487-62645506 | Msa0463310:intron | 15.0% |
| !!! | ATTTAATTTAATAGTCAACA+AGG | - | chr3_3:62645597-62645616 | None:intergenic | 15.0% |
| !! | TTGTAACTCATAATATATAT+TGG | + | chr3_3:62645632-62645651 | Msa0463310:intron | 15.0% |
| !! | TGTAACTCATAATATATATT+GGG | + | chr3_3:62645633-62645652 | Msa0463310:intron | 15.0% |
| !! | AAATTTCATTGTAAAAACAA+AGG | - | chr3_3:62645836-62645855 | None:intergenic | 15.0% |
| !!! | TTTTTGATAAATCAATTTTG+GGG | - | chr3_3:62646145-62646164 | None:intergenic | 15.0% |
| !! | TCAAATTATAATCCATTAAT+TGG | + | chr3_3:62647895-62647914 | Msa0463310:CDS | 15.0% |
| !! | CAAATTATAATCCATTAATT+GGG | + | chr3_3:62647896-62647915 | Msa0463310:CDS | 15.0% |
| !!! | ATTTTGGGTAATAATTTTTA+AGG | + | chr3_3:62648033-62648052 | Msa0463310:intron | 15.0% |
| !!! | TAATATATTTATTTTTGCTG+TGG | + | chr3_3:62648210-62648229 | Msa0463310:intron | 15.0% |
| !!! | AATATATTTATTTTTGCTGT+GGG | + | chr3_3:62648211-62648230 | Msa0463310:intron | 15.0% |
| !! | TCAAATAAAATAATTCATTC+AGG | - | chr3_3:62648650-62648669 | None:intergenic | 15.0% |
| !! | TCAATAAAATAAACAGTATA+TGG | - | chr3_3:62649424-62649443 | None:intergenic | 15.0% |
| !!! | TAATTTTAATCGGATATGAA+GGG | - | chr3_3:62644914-62644933 | None:intergenic | 20.0% |
| !!! | TTAATTTTAATCGGATATGA+AGG | - | chr3_3:62644915-62644934 | None:intergenic | 20.0% |
| !! | ACAAACAAAGAATCAAAAAA+TGG | + | chr3_3:62645115-62645134 | Msa0463310:exon | 20.0% |
| !! | CTAACTCTATAAATTATGTT+TGG | - | chr3_3:62646171-62646190 | None:intergenic | 20.0% |
| !!! | GTAATTTTTATGAACTATGT+TGG | + | chr3_3:62646332-62646351 | Msa0463310:intron | 20.0% |
| !! | AATATGTAATAATGTGACAA+TGG | - | chr3_3:62646428-62646447 | None:intergenic | 20.0% |
| !! | AATGTTGTATATAAATTGCA+AGG | + | chr3_3:62647199-62647218 | Msa0463310:intron | 20.0% |
| !!! | TTTAATTTTGTATGTGAGAT+TGG | + | chr3_3:62647225-62647244 | Msa0463310:intron | 20.0% |
| !! | TATCTCATATTTCTTTAATC+CGG | - | chr3_3:62647615-62647634 | None:intergenic | 20.0% |
| !!! | CATTTATATTCAATTAGCTT+TGG | + | chr3_3:62647744-62647763 | Msa0463310:intron | 20.0% |
| !!! | TAATGGATTATAATTTGATG+AGG | - | chr3_3:62647893-62647912 | None:intergenic | 20.0% |
| !!! | TTTTCATAACAGTATCAAAA+GGG | - | chr3_3:62649075-62649094 | None:intergenic | 20.0% |
| !!! | TTTTTCATAACAGTATCAAA+AGG | - | chr3_3:62649076-62649095 | None:intergenic | 20.0% |
| !! | TATTCATGTAAATACCATAA+GGG | - | chr3_3:62649458-62649477 | None:intergenic | 20.0% |
| !! | ATATTCATGTAAATACCATA+AGG | - | chr3_3:62649459-62649478 | None:intergenic | 20.0% |
| !! | GTATTTACATGAATATCTAA+GGG | + | chr3_3:62649463-62649482 | Msa0463310:three_prime_UTR | 20.0% |
| !!! | AATTTTAATCGGATATGAAG+GGG | - | chr3_3:62644913-62644932 | None:intergenic | 25.0% |
| !! | ATAGTTGTTCAGTTTCTTTT+TGG | + | chr3_3:62645528-62645547 | Msa0463310:intron | 25.0% |
| ! | TCATCATGAATTTCTATAAC+TGG | + | chr3_3:62645659-62645678 | Msa0463310:intron | 25.0% |
| !! | TAACTTCATTAGTCTATGTT+TGG | + | chr3_3:62645685-62645704 | Msa0463310:intron | 25.0% |
| ! | TAAAAGTGATTTGATGTGTT+TGG | + | chr3_3:62645746-62645765 | Msa0463310:intron | 25.0% |
| !! | TGTATGTTTTCTTCTATGTT+TGG | + | chr3_3:62645924-62645943 | Msa0463310:intron | 25.0% |
| !!! | AGAATCAATTCTAGAATCAA+AGG | + | chr3_3:62646083-62646102 | Msa0463310:intron | 25.0% |
| ! | TCACATTATTACATATTCAC+CGG | + | chr3_3:62646431-62646450 | Msa0463310:CDS | 25.0% |
| ! | AGTTAGATATGAATTATGAC+CGG | - | chr3_3:62646453-62646472 | None:intergenic | 25.0% |
| ! | TGTTGGAGATATAATTCAAA+CGG | - | chr3_3:62646613-62646632 | None:intergenic | 25.0% |
| ! | ATGAATCTTCTTCAAATTGT+TGG | - | chr3_3:62646630-62646649 | None:intergenic | 25.0% |
| ! | AACCATCTAAAAATTGAACA+GGG | - | chr3_3:62646927-62646946 | None:intergenic | 25.0% |
| ! | TAACCATCTAAAAATTGAAC+AGG | - | chr3_3:62646928-62646947 | None:intergenic | 25.0% |
| !!! | ATCCTTTTTTTAAGTGATTC+AGG | - | chr3_3:62647013-62647032 | None:intergenic | 25.0% |
| !!! | TTAGAACACTGTTTTTTAGA+TGG | + | chr3_3:62647673-62647692 | Msa0463310:intron | 25.0% |
| ! | ATTATAATCCATTAATTGGG+TGG | + | chr3_3:62647899-62647918 | Msa0463310:CDS | 25.0% |
| !!! | GGATACTGATTGAAAATTTT+GGG | + | chr3_3:62648018-62648037 | Msa0463310:intron | 25.0% |
| !! | TTTGAGTAATGACTTTTACA+AGG | + | chr3_3:62648424-62648443 | Msa0463310:intron | 25.0% |
| !! | TTGAGTAATGACTTTTACAA+GGG | + | chr3_3:62648425-62648444 | Msa0463310:intron | 25.0% |
| !! | TGCTTTTCTTACTCTTAATT+AGG | + | chr3_3:62648509-62648528 | Msa0463310:intron | 25.0% |
| ! | TAATTAGGTGACTGTATATA+TGG | + | chr3_3:62648524-62648543 | Msa0463310:intron | 25.0% |
| ! | AATTAGGTGACTGTATATAT+GGG | + | chr3_3:62648525-62648544 | Msa0463310:intron | 25.0% |
| ! | TATTTGATAAACTCTTATGC+AGG | + | chr3_3:62649033-62649052 | Msa0463310:intron | 25.0% |
| ! | GAAAAAAACAAAGTCAATAG+AGG | + | chr3_3:62649090-62649109 | Msa0463310:CDS | 25.0% |
| ! | CTGTACAAAATATATATCAG+AGG | - | chr3_3:62649363-62649382 | None:intergenic | 25.0% |
| ! | GGTATTTACATGAATATCTA+AGG | + | chr3_3:62649462-62649481 | Msa0463310:three_prime_UTR | 25.0% |
| !!! | ACGCTGTATGTTTGTTTTTT+CGG | - | chr3_3:62645149-62645168 | None:intergenic | 30.0% |
| ! | AGTTTCTTCAAGTTTCTCTT+CGG | + | chr3_3:62645401-62645420 | Msa0463310:CDS | 30.0% |
| !!! | TCAGTTTCTTTTTGGTGTTA+TGG | + | chr3_3:62645536-62645555 | Msa0463310:intron | 30.0% |
| !!! | TCTATGTTTGGTTTTACGTT+TGG | + | chr3_3:62645697-62645716 | Msa0463310:intron | 30.0% |
| ! | ATTGATTCTAACTTGAAGCT+AGG | + | chr3_3:62645802-62645821 | Msa0463310:intron | 30.0% |
| CAAGTAAAGTGGTTTATGTT+TGG | - | chr3_3:62645889-62645908 | None:intergenic | 30.0% | |
| AAAGTGAGTTACAAGTAAAG+TGG | - | chr3_3:62645900-62645919 | None:intergenic | 30.0% | |
| !! | TATAGAGTTAGAGTTGCTTT+TGG | + | chr3_3:62646180-62646199 | Msa0463310:intron | 30.0% |
| ACAATGGTAAACTCATATCT+TGG | - | chr3_3:62646412-62646431 | None:intergenic | 30.0% | |
| GGTCATAATTCATATCTAAC+TGG | + | chr3_3:62646452-62646471 | Msa0463310:CDS | 30.0% | |
| ! | GTTGCTGTTAGTAAAATACA+TGG | - | chr3_3:62646653-62646672 | None:intergenic | 30.0% |
| ACAAAATGATGCAATCTTAC+AGG | + | chr3_3:62646671-62646690 | Msa0463310:intron | 30.0% | |
| CAAATGTTTGACGTCTATTA+AGG | + | chr3_3:62646720-62646739 | Msa0463310:CDS | 30.0% | |
| !! | TCTTCTAAGGTTATTACAAC+CGG | - | chr3_3:62646772-62646791 | None:intergenic | 30.0% |
| TAGATGGTTACTCAAACATT+TGG | + | chr3_3:62646938-62646957 | Msa0463310:intron | 30.0% | |
| !!! | TTTTTAAGTGATTCAGGTGA+AGG | - | chr3_3:62647007-62647026 | None:intergenic | 30.0% |
| CACCTGAATCACTTAAAAAA+AGG | + | chr3_3:62647008-62647027 | Msa0463310:CDS | 30.0% | |
| AAAAGACGAAAAGGAAAATG+AGG | + | chr3_3:62647072-62647091 | Msa0463310:CDS | 30.0% | |
| ! | ATTTTGTATGTGAGATTGGT+TGG | + | chr3_3:62647229-62647248 | Msa0463310:intron | 30.0% |
| TTCTATCTTTAGCAAAACAG+TGG | + | chr3_3:62647267-62647286 | Msa0463310:intron | 30.0% | |
| ! | TGTTGATGAAGATGATCTTA+AGG | + | chr3_3:62647290-62647309 | Msa0463310:CDS | 30.0% |
| ! | AGTAATTTTACCTGTTGCAT+TGG | + | chr3_3:62647563-62647582 | Msa0463310:intron | 30.0% |
| TTTAATCCGGTAACAATAAC+AGG | - | chr3_3:62647602-62647621 | None:intergenic | 30.0% | |
| ! | TTTTTAGATGGCATATCGAA+CGG | + | chr3_3:62647685-62647704 | Msa0463310:intron | 30.0% |
| !! | CGGATACTGATTGAAAATTT+TGG | + | chr3_3:62648017-62648036 | Msa0463310:intron | 30.0% |
| !!! | ATATTTATTTTTGCTGTGGG+TGG | + | chr3_3:62648214-62648233 | Msa0463310:intron | 30.0% |
| ! | CCAGTTTTCAATAGAAAATC+AGG | - | chr3_3:62648323-62648342 | None:intergenic | 30.0% |
| ! | CCTGATTTTCTATTGAAAAC+TGG | + | chr3_3:62648320-62648339 | Msa0463310:CDS | 30.0% |
| ! | TGAGTAATGACTTTTACAAG+GGG | + | chr3_3:62648426-62648445 | Msa0463310:intron | 30.0% |
| TCTAGACTTGATTCTAACAA+AGG | + | chr3_3:62648483-62648502 | Msa0463310:intron | 30.0% | |
| ATAACTGGAACATAACTGTT+TGG | - | chr3_3:62648914-62648933 | None:intergenic | 30.0% | |
| ! | CGAAGCATTAGAAAAACATA+TGG | - | chr3_3:62648946-62648965 | None:intergenic | 30.0% |
| ACTCTTGCGTTATAATGTAA+TGG | - | chr3_3:62649386-62649405 | None:intergenic | 30.0% | |
| !!! | TGATGTTTTTTTTGCCCTTA+TGG | + | chr3_3:62649441-62649460 | Msa0463310:three_prime_UTR | 30.0% |
| ATCAAACAAAACACACTCTT+TGG | - | chr3_3:62649529-62649548 | None:intergenic | 30.0% | |
| ! | ATAAGATGTGTCTCATGTTT+TGG | + | chr3_3:62649570-62649589 | Msa0463310:three_prime_UTR | 30.0% |
| !! | GTTTTGGATTTTGACATTAG+TGG | + | chr3_3:62649586-62649605 | Msa0463310:three_prime_UTR | 30.0% |
| TGATAAAGCTCCTTTATCTC+CGG | - | chr3_3:62645221-62645240 | None:intergenic | 35.0% | |
| GAAACACAAGCAATCATTGA+TGG | + | chr3_3:62645332-62645351 | Msa0463310:CDS | 35.0% | |
| TTGAGTATCTTTCATCGTAG+AGG | + | chr3_3:62645365-62645384 | Msa0463310:CDS | 35.0% | |
| AAAAAAAAGGATTACCCCAG+TGG | - | chr3_3:62645453-62645472 | None:intergenic | 35.0% | |
| ! | TTGATGTGTTTGGTTTCTCT+TGG | + | chr3_3:62645756-62645775 | Msa0463310:intron | 35.0% |
| ! | TGATGTGTTTGGTTTCTCTT+GGG | + | chr3_3:62645757-62645776 | Msa0463310:intron | 35.0% |
| TGTTGTTCAACACACTCTTA+CGG | + | chr3_3:62645855-62645874 | Msa0463310:intron | 35.0% | |
| !! | TTCTATGTTTGGTTCTGCTT+TGG | + | chr3_3:62645935-62645954 | Msa0463310:intron | 35.0% |
| ! | TAGGTGAAGTGATTTGTGTT+TGG | + | chr3_3:62646017-62646036 | Msa0463310:intron | 35.0% |
| !! | GGCACTTGAAAAGCATTATA+AGG | + | chr3_3:62646201-62646220 | Msa0463310:intron | 35.0% |
| TAAGTGCATGTTTGAATCTG+CGG | - | chr3_3:62646283-62646302 | None:intergenic | 35.0% | |
| GAACTATGTTGGTGTGATAA+TGG | + | chr3_3:62646343-62646362 | Msa0463310:intron | 35.0% | |
| ! | CTGTTTCTTTGTGTGATTTC+AGG | + | chr3_3:62646382-62646401 | Msa0463310:intron | 35.0% |
| ! | TCTGAAGTGCTTTGATGATA+GGG | - | chr3_3:62646508-62646527 | None:intergenic | 35.0% |
| GGGTGATTGAATTGGATATA+TGG | + | chr3_3:62646537-62646556 | Msa0463310:CDS | 35.0% | |
| GGTAAACTTACATTCCATGA+AGG | - | chr3_3:62646592-62646611 | None:intergenic | 35.0% | |
| AAACATTTGATAAGTGCCAC+AGG | - | chr3_3:62646709-62646728 | None:intergenic | 35.0% | |
| !! | AGCCCTGTTCAATTTTTAGA+TGG | + | chr3_3:62646922-62646941 | Msa0463310:intron | 35.0% |
| AAATTCCTTCAAGGTTTCTG+AGG | - | chr3_3:62646984-62647003 | None:intergenic | 35.0% | |
| TTTAGGTGATGAAGAAGCTT+GGG | + | chr3_3:62647114-62647133 | Msa0463310:CDS | 35.0% | |
| TGATGAAGATGATCTTAAGG+AGG | + | chr3_3:62647293-62647312 | Msa0463310:CDS | 35.0% | |
| ! | GGTAGTCATCTGATGTATTT+TGG | - | chr3_3:62647350-62647369 | None:intergenic | 35.0% |
| CATGAATAGCAATTAAGCGT+CGG | - | chr3_3:62647371-62647390 | None:intergenic | 35.0% | |
| ! | AATAGTGGAATGTCTCAAAG+TGG | + | chr3_3:62647410-62647429 | Msa0463310:CDS | 35.0% |
| CATACGGAAAAGAAATTGTC+AGG | + | chr3_3:62647493-62647512 | Msa0463310:CDS | 35.0% | |
| TTCGATCCTGTTATTGTTAC+CGG | + | chr3_3:62647593-62647612 | Msa0463310:intron | 35.0% | |
| AATCGGTGAAACTATTGTCA+AGG | - | chr3_3:62647647-62647666 | None:intergenic | 35.0% | |
| !! | CAGTGTTCTAAGAAGACAAT+CGG | - | chr3_3:62647664-62647683 | None:intergenic | 35.0% |
| TCAATAACAAGAAACCTGTG+AGG | + | chr3_3:62647987-62648006 | Msa0463310:intron | 35.0% | |
| ! | TTTTGTCTTGACTTTCACTG+TGG | + | chr3_3:62648085-62648104 | Msa0463310:intron | 35.0% |
| AATGTCTTGATACAGCTGAA+AGG | - | chr3_3:62648138-62648157 | None:intergenic | 35.0% | |
| ! | CAAGGAATGTTTAAAGCCAA+TGG | + | chr3_3:62648275-62648294 | Msa0463310:CDS | 35.0% |
| GGATCGAAAACCTCATTAAT+GGG | - | chr3_3:62648347-62648366 | None:intergenic | 35.0% | |
| AGGATCGAAAACCTCATTAA+TGG | - | chr3_3:62648348-62648367 | None:intergenic | 35.0% | |
| ! | ACCTTCAAAGTAGTTTTCGA+TGG | - | chr3_3:62648383-62648402 | None:intergenic | 35.0% |
| CTCAAATCTCAAAGCTGTAA+AGG | - | chr3_3:62648410-62648429 | None:intergenic | 35.0% | |
| AGTCTAGAGACACTTAATGA+TGG | - | chr3_3:62648471-62648490 | None:intergenic | 35.0% | |
| !! | TTCCATAAGCTCTCTAAGAT+AGG | + | chr3_3:62648760-62648779 | Msa0463310:intron | 35.0% |
| AACCTATCTTAGAGAGCTTA+TGG | - | chr3_3:62648765-62648784 | None:intergenic | 35.0% | |
| ATATGGATGCTAGCTATAAC+TGG | - | chr3_3:62648929-62648948 | None:intergenic | 35.0% | |
| TGATAAACTCTTATGCAGGT+TGG | + | chr3_3:62649037-62649056 | Msa0463310:intron | 35.0% | |
| CAAAGTCAATAGAGGATAGT+TGG | + | chr3_3:62649098-62649117 | Msa0463310:CDS | 35.0% | |
| AGGGTGTGAGAATAATGTAT+TGG | + | chr3_3:62649482-62649501 | Msa0463310:three_prime_UTR | 35.0% | |
| GTGTGAGAATAATGTATTGG+TGG | + | chr3_3:62649485-62649504 | Msa0463310:three_prime_UTR | 35.0% | |
| !! | GATTTTGACATTAGTGGCAA+AGG | + | chr3_3:62649592-62649611 | Msa0463310:three_prime_UTR | 35.0% |
| TAATCGGATATGAAGGGGAA+TGG | - | chr3_3:62644908-62644927 | None:intergenic | 40.0% | |
| TATCATCGTTACTCCGATGA+AGG | + | chr3_3:62645236-62645255 | Msa0463310:CDS | 40.0% | |
| CGTGACTAAAAGTGAGTTGT+AGG | + | chr3_3:62645998-62646017 | Msa0463310:intron | 40.0% | |
| GCAGATTCAAACATGCACTT+AGG | + | chr3_3:62646282-62646301 | Msa0463310:intron | 40.0% | |
| ! | CTGAAGTGCTTTGATGATAG+GGG | - | chr3_3:62646507-62646526 | None:intergenic | 40.0% |
| !! | CTCTGAAGTGCTTTGATGAT+AGG | - | chr3_3:62646509-62646528 | None:intergenic | 40.0% |
| ! | ATCATCAAAGCACTTCAGAG+AGG | + | chr3_3:62646509-62646528 | Msa0463310:CDS | 40.0% |
| AGGTGTTAGGGTGATTGAAT+TGG | + | chr3_3:62646529-62646548 | Msa0463310:CDS | 40.0% | |
| TATATGGCCTAATGACTCCA+AGG | + | chr3_3:62646553-62646572 | Msa0463310:CDS | 40.0% | |
| ACATCATCCTTGGAGTCATT+AGG | - | chr3_3:62646563-62646582 | None:intergenic | 40.0% | |
| AAGGACTTCAACATCATCCT+TGG | - | chr3_3:62646573-62646592 | None:intergenic | 40.0% | |
| GATGATGTTGAAGTCCTTCA+TGG | + | chr3_3:62646575-62646594 | Msa0463310:CDS | 40.0% | |
| AGGAGTAAGATGGTCTTCTA+AGG | - | chr3_3:62646785-62646804 | None:intergenic | 40.0% | |
| AGGTGAAGGAAATTCCTTCA+AGG | - | chr3_3:62646993-62647012 | None:intergenic | 40.0% | |
| ! | TTTGCTTCAAGGTACTCCTT+AGG | - | chr3_3:62647055-62647074 | None:intergenic | 40.0% |
| ! | CCTTTTCGTCTTTTGCTTCA+AGG | - | chr3_3:62647066-62647085 | None:intergenic | 40.0% |
| CCTTGAAGCAAAAGACGAAA+AGG | + | chr3_3:62647063-62647082 | Msa0463310:CDS | 40.0% | |
| GAAAATGAGGAACCACAGAA+GGG | + | chr3_3:62647085-62647104 | Msa0463310:CDS | 40.0% | |
| CAAGCTTCTTCATCACCTAA+AGG | - | chr3_3:62647115-62647134 | None:intergenic | 40.0% | |
| CTTTAGGTGATGAAGAAGCT+TGG | + | chr3_3:62647113-62647132 | Msa0463310:CDS | 40.0% | |
| TTAGGTGATGAAGAAGCTTG+GGG | + | chr3_3:62647115-62647134 | Msa0463310:CDS | 40.0% | |
| AAAGAAGTCCCTAGTTTGAG+AGG | + | chr3_3:62647139-62647158 | Msa0463310:CDS | 40.0% | |
| CGGTACTATAGCTGATTACA+AGG | + | chr3_3:62647162-62647181 | Msa0463310:CDS | 40.0% | |
| TGAAGATGATCTTAAGGAGG+AGG | + | chr3_3:62647296-62647315 | Msa0463310:CDS | 40.0% | |
| ! | CGCTTAATTGCTATTCATGC+CGG | + | chr3_3:62647372-62647391 | Msa0463310:CDS | 40.0% |
| ! | GCTTAATTGCTATTCATGCC+GGG | + | chr3_3:62647373-62647392 | Msa0463310:CDS | 40.0% |
| CATTCCACTATTCCACCTTT+AGG | - | chr3_3:62647402-62647421 | None:intergenic | 40.0% | |
| CTTAGACGTCTCACTTTATC+AGG | - | chr3_3:62647438-62647457 | None:intergenic | 40.0% | |
| GAAAAGGCTGCTGAAACATA+CGG | + | chr3_3:62647477-62647496 | Msa0463310:CDS | 40.0% | |
| !! | CTTTGGAACAAACACGTTAC+AGG | + | chr3_3:62647761-62647780 | Msa0463310:intron | 40.0% |
| TTGATCCTCTGATTGTTGAC+AGG | + | chr3_3:62647818-62647837 | Msa0463310:intron | 40.0% | |
| ATATTGCGAGTGTATCCGAA+AGG | + | chr3_3:62647856-62647875 | Msa0463310:CDS | 40.0% | |
| GATGGTTGCATTTAACATGC+AGG | + | chr3_3:62647936-62647955 | Msa0463310:CDS | 40.0% | |
| ! | AGATCTCTTTGGTTGATGCA+AGG | + | chr3_3:62648257-62648276 | Msa0463310:CDS | 40.0% |
| ! | GGAATGTTTAAAGCCAATGG+AGG | + | chr3_3:62648278-62648297 | Msa0463310:CDS | 40.0% |
| ! | TTTAAAGCCAATGGAGGATG+CGG | + | chr3_3:62648284-62648303 | Msa0463310:CDS | 40.0% |
| GAAAACTGGTCCCATTAATG+AGG | + | chr3_3:62648334-62648353 | Msa0463310:CDS | 40.0% | |
| TTCGATGGCAAATGAGCTTT+AGG | - | chr3_3:62648368-62648387 | None:intergenic | 40.0% | |
| GCCATCGAAAACTACTTTGA+AGG | + | chr3_3:62648379-62648398 | Msa0463310:CDS | 40.0% | |
| ! | CGAAAACTACTTTGAAGGTG+AGG | + | chr3_3:62648384-62648403 | Msa0463310:intron | 40.0% |
| ! | AATGACTTTTACAAGGGGCA+AGG | + | chr3_3:62648431-62648450 | Msa0463310:intron | 40.0% |
| ! | ATGACTTTTACAAGGGGCAA+GGG | + | chr3_3:62648432-62648451 | Msa0463310:intron | 40.0% |
| GTGACTGTATATATGGGAGA+AGG | + | chr3_3:62648531-62648550 | Msa0463310:CDS | 40.0% | |
| CTGTATATATGGGAGAAGGA+TGG | + | chr3_3:62648535-62648554 | Msa0463310:CDS | 40.0% | |
| TCGAATACCTCATTCCAAGA+AGG | - | chr3_3:62649127-62649146 | None:intergenic | 40.0% | |
| TGAGTATGACATGTCTGAGA+AGG | + | chr3_3:62649195-62649214 | Msa0463310:CDS | 40.0% | |
| ATGTCTGAGAAGGATGACTT+TGG | + | chr3_3:62649205-62649224 | Msa0463310:CDS | 40.0% | |
| ATTCCATTACATTCGCGCAA+AGG | + | chr3_3:62649277-62649296 | Msa0463310:CDS | 40.0% | |
| CGTGTGAGTTCTGTGTTTAG+AGG | - | chr3_3:62644958-62644977 | None:intergenic | 45.0% | |
| ! | GTGTTCGTGTGATCGTGTTT+TGG | - | chr3_3:62644987-62645006 | None:intergenic | 45.0% |
| ACTAACTACCAATAAGCGCG+TGG | - | chr3_3:62645009-62645028 | None:intergenic | 45.0% | |
| CCAATACGCCGAGTTTAAAC+CGG | - | chr3_3:62645190-62645209 | None:intergenic | 45.0% | |
| GTTTAAACTCGGCGTATTGG+AGG | + | chr3_3:62645190-62645209 | Msa0463310:CDS | 45.0% | |
| TAAAGCTCCTTTATCTCCGG+CGG | - | chr3_3:62645218-62645237 | None:intergenic | 45.0% | |
| ATCGTTACTCCGATGAAGGA+GGG | + | chr3_3:62645240-62645259 | Msa0463310:CDS | 45.0% | |
| TGTCATGATCCCTCCTTCAT+CGG | - | chr3_3:62645252-62645271 | None:intergenic | 45.0% | |
| CCTCAATCAGAAAGCTTCTG+AGG | - | chr3_3:62645283-62645302 | None:intergenic | 45.0% | |
| CCTCAGAAGCTTTCTGATTG+AGG | + | chr3_3:62645280-62645299 | Msa0463310:CDS | 45.0% | |
| AAAAGGATTACCCCAGTGGA+AGG | - | chr3_3:62645449-62645468 | None:intergenic | 45.0% | |
| !! | AAGCACTTCAGAGAGGTGTT+AGG | + | chr3_3:62646516-62646535 | Msa0463310:CDS | 45.0% |
| !! | AGCACTTCAGAGAGGTGTTA+GGG | + | chr3_3:62646517-62646536 | Msa0463310:CDS | 45.0% |
| CTTCGTTGCGTCAGAATATC+CGG | + | chr3_3:62646750-62646769 | Msa0463310:CDS | 45.0% | |
| CCTGAAGATCAGGAGTAAGA+TGG | - | chr3_3:62646795-62646814 | None:intergenic | 45.0% | |
| CCATCTTACTCCTGATCTTC+AGG | + | chr3_3:62646792-62646811 | Msa0463310:CDS | 45.0% | |
| GTAACTAACCTGAGCCACTT+TGG | - | chr3_3:62646818-62646837 | None:intergenic | 45.0% | |
| ! | AGTGGCTCAGGTTAGTTACT+TGG | + | chr3_3:62646819-62646838 | Msa0463310:intron | 45.0% |
| TCCTACCTCAGAAACCTTGA+AGG | + | chr3_3:62646976-62646995 | Msa0463310:CDS | 45.0% | |
| !! | TCCTTCAAGGTTTCTGAGGT+AGG | - | chr3_3:62646980-62646999 | None:intergenic | 45.0% |
| GGAAAATGAGGAACCACAGA+AGG | + | chr3_3:62647084-62647103 | Msa0463310:CDS | 45.0% | |
| TAGTACCGCCTCTCAAACTA+GGG | - | chr3_3:62647150-62647169 | None:intergenic | 45.0% | |
| ATAGTACCGCCTCTCAAACT+AGG | - | chr3_3:62647151-62647170 | None:intergenic | 45.0% | |
| GGAGGAAGATTCTGATGAAG+CGG | + | chr3_3:62647314-62647333 | Msa0463310:CDS | 45.0% | |
| TATTCCACCTTTAGGCTTCC+CGG | - | chr3_3:62647394-62647413 | None:intergenic | 45.0% | |
| GAAGCCTAAAGGTGGAATAG+TGG | + | chr3_3:62647395-62647414 | Msa0463310:CDS | 45.0% | |
| AAGTGAGTCACAGCTCGAAA+AGG | + | chr3_3:62647461-62647480 | Msa0463310:CDS | 45.0% | |
| GAATCAAGAGCCAATGCAAC+AGG | - | chr3_3:62647576-62647595 | None:intergenic | 45.0% | |
| GTGAACCTGTCAACAATCAG+AGG | - | chr3_3:62647826-62647845 | None:intergenic | 45.0% | |
| GAGGTAATGCGTGTACCTTT+CGG | - | chr3_3:62647874-62647893 | None:intergenic | 45.0% | |
| CCATGCATCCACCCAATTAA+TGG | - | chr3_3:62647910-62647929 | None:intergenic | 45.0% | |
| CCATTAATTGGGTGGATGCA+TGG | + | chr3_3:62647907-62647926 | Msa0463310:CDS | 45.0% | |
| TCTTGACTTTCACTGTGGTG+AGG | + | chr3_3:62648090-62648109 | Msa0463310:intron | 45.0% | |
| !! | TTTTGCTGTGGGTGGTTCTT+TGG | + | chr3_3:62648222-62648241 | Msa0463310:intron | 45.0% |
| TGGTTCTTTGGCAGGGTTAT+GGG | + | chr3_3:62648234-62648253 | Msa0463310:intron | 45.0% | |
| AGGGTTATGGGAGATCTCTT+TGG | + | chr3_3:62648246-62648265 | Msa0463310:intron | 45.0% | |
| AACAAAACCGCATCCTCCAT+TGG | - | chr3_3:62648294-62648313 | None:intergenic | 45.0% | |
| ACCTCCAGACTTCTATGCAA+GGG | + | chr3_3:62648596-62648615 | Msa0463310:CDS | 45.0% | |
| CATACCCTTGCATAGAAGTC+TGG | - | chr3_3:62648603-62648622 | None:intergenic | 45.0% | |
| ! | CTTATGCAGGTTGGAATTGC+TGG | + | chr3_3:62649046-62649065 | Msa0463310:intron | 45.0% |
| AGGATAGTTGGTTGCCTTCT+TGG | + | chr3_3:62649110-62649129 | Msa0463310:CDS | 45.0% | |
| TTGGTTGCCTTCTTGGAATG+AGG | + | chr3_3:62649117-62649136 | Msa0463310:CDS | 45.0% | |
| CGAATTCCCACTTTCAGTTC+CGG | + | chr3_3:62649144-62649163 | Msa0463310:CDS | 45.0% | |
| TCTGAGAAGGATGACTTTGG+TGG | + | chr3_3:62649208-62649227 | Msa0463310:CDS | 45.0% | |
| CCAAACATGCTTACCTGTGT+GGG | + | chr3_3:62649231-62649250 | Msa0463310:CDS | 45.0% | |
| TCTCCTTTGCGCGAATGTAA+TGG | - | chr3_3:62649283-62649302 | None:intergenic | 45.0% | |
| !! | TATTAAATTAAATTTGTAAA+TGG | + | chr3_3:62645604-62645623 | Msa0463310:intron | 5.0% |
| ! | ACAGCGTATGTTTCTGCTGC+CGG | + | chr3_3:62645162-62645181 | Msa0463310:CDS | 50.0% |
| CCGGTTTAAACTCGGCGTAT+TGG | + | chr3_3:62645187-62645206 | Msa0463310:CDS | 50.0% | |
| CATCGTTACTCCGATGAAGG+AGG | + | chr3_3:62645239-62645258 | Msa0463310:CDS | 50.0% | |
| CTCCTCTCTTACCTTCCACT+GGG | + | chr3_3:62645435-62645454 | Msa0463310:CDS | 50.0% | |
| TCCTCTCTTACCTTCCACTG+GGG | + | chr3_3:62645436-62645455 | Msa0463310:CDS | 50.0% | |
| CGGATATTCTGACGCAACGA+AGG | - | chr3_3:62646752-62646771 | None:intergenic | 50.0% | |
| TCCTGATCTTCAGGCCAAAG+TGG | + | chr3_3:62646801-62646820 | Msa0463310:CDS | 50.0% | |
| CATATCAACCAAGCCGCCTA+AGG | + | chr3_3:62647036-62647055 | Msa0463310:CDS | 50.0% | |
| ! | GCTTCAAGGTACTCCTTAGG+CGG | - | chr3_3:62647052-62647071 | None:intergenic | 50.0% |
| CCTAAAGGCTTTCCCTTCTG+TGG | - | chr3_3:62647100-62647119 | None:intergenic | 50.0% | |
| CCACAGAAGGGAAAGCCTTT+AGG | + | chr3_3:62647097-62647116 | Msa0463310:CDS | 50.0% | |
| GAAGTCCCTAGTTTGAGAGG+CGG | + | chr3_3:62647142-62647161 | Msa0463310:CDS | 50.0% | |
| ATTCATGCCGGGAAGCCTAA+AGG | + | chr3_3:62647384-62647403 | Msa0463310:CDS | 50.0% | |
| GAAACCTGTGAGGTCTAGCA+CGG | + | chr3_3:62647997-62648016 | Msa0463310:intron | 50.0% | |
| GTGGTTCTTTGGCAGGGTTA+TGG | + | chr3_3:62648233-62648252 | Msa0463310:intron | 50.0% | |
| CACCTCCAGACTTCTATGCA+AGG | + | chr3_3:62648595-62648614 | Msa0463310:CDS | 50.0% | |
| ACCCTTGCATAGAAGTCTGG+AGG | - | chr3_3:62648600-62648619 | None:intergenic | 50.0% | |
| GCCAAACATGCTTACCTGTG+TGG | + | chr3_3:62649230-62649249 | Msa0463310:CDS | 50.0% | |
| CCCACACAGGTAAGCATGTT+TGG | - | chr3_3:62649234-62649253 | None:intergenic | 50.0% | |
| CCACTTCTTAGTTCCCACAC+AGG | - | chr3_3:62649247-62649266 | None:intergenic | 50.0% | |
| CCTGTGTGGGAACTAAGAAG+TGG | + | chr3_3:62649244-62649263 | Msa0463310:CDS | 50.0% | |
| CACGAACACCACGCGCTTAT+TGG | + | chr3_3:62644998-62645017 | Msa0463310:five_prime_UTR | 55.0% | |
| CCAGTGGAAGGTAAGAGAGG+AGG | - | chr3_3:62645437-62645456 | None:intergenic | 55.0% | |
| CCTCCTCTCTTACCTTCCAC+TGG | + | chr3_3:62645434-62645453 | Msa0463310:CDS | 55.0% | |
| ACCCCAGTGGAAGGTAAGAG+AGG | - | chr3_3:62645440-62645459 | None:intergenic | 55.0% | |
| CAGGACATTGACGACTCCTG+TGG | + | chr3_3:62646690-62646709 | Msa0463310:intron | 55.0% | |
| ! | GCCACTTTGGCCTGAAGATC+AGG | - | chr3_3:62646805-62646824 | None:intergenic | 55.0% |
| TCTTCAGGCCAAAGTGGCTC+AGG | + | chr3_3:62646807-62646826 | Msa0463310:CDS | 55.0% | |
| ! | AAGGTACTCCTTAGGCGGCT+TGG | - | chr3_3:62647047-62647066 | None:intergenic | 55.0% |
| GTGGATGCATGGAGCTCAGA+TGG | + | chr3_3:62647918-62647937 | Msa0463310:CDS | 55.0% | |
| GTATCCGTGCTAGACCTCAC+AGG | - | chr3_3:62648004-62648023 | None:intergenic | 55.0% | |
| CTGTGGGTGGTTCTTTGGCA+GGG | + | chr3_3:62648227-62648246 | Msa0463310:intron | 55.0% | |
| CCAGCTCCGGAACTGAAAGT+GGG | - | chr3_3:62649153-62649172 | None:intergenic | 55.0% | |
| ! | TATGTTTCTGCTGCCGGCGC+CGG | + | chr3_3:62645168-62645187 | Msa0463310:CDS | 60.0% |
| !! | TGCCGGCGCCGGTTTAAACT+CGG | + | chr3_3:62645179-62645198 | Msa0463310:CDS | 60.0% |
| CATGCCGGGAAGCCTAAAGG+TGG | + | chr3_3:62647387-62647406 | Msa0463310:CDS | 60.0% | |
| GCTGTGGGTGGTTCTTTGGC+AGG | + | chr3_3:62648226-62648245 | Msa0463310:intron | 60.0% | |
| CCCACTTTCAGTTCCGGAGC+TGG | + | chr3_3:62649150-62649169 | Msa0463310:CDS | 60.0% | |
| GCCAGCTCCGGAACTGAAAG+TGG | - | chr3_3:62649154-62649173 | None:intergenic | 60.0% | |
| CGCCGAGTTTAAACCGGCGC+CGG | - | chr3_3:62645184-62645203 | None:intergenic | 65.0% | |
| !! | GGAGGCACCGCCGGAGATAA+AGG | + | chr3_3:62645208-62645227 | Msa0463310:CDS | 65.0% |
| ATGCGAAGCAGCGCCAGCTC+CGG | - | chr3_3:62649166-62649185 | None:intergenic | 65.0% | |
| !! | CGGCGTATTGGAGGCACCGC+CGG | + | chr3_3:62645199-62645218 | Msa0463310:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 62644896 | 62649625 | 62644896 | ID=Msa0463310;Name=Msa0463310 |
| chr3_3 | mRNA | 62644896 | 62649625 | 62644896 | ID=Msa0463310-mRNA-1;Parent=Msa0463310;Name=Msa0463310-mRNA-1;_AED=0.30;_eAED=0.30;_QI=238|1|1|1|1|1|9|277|595 |
| chr3_3 | exon | 62644896 | 62645457 | 62644896 | ID=Msa0463310-mRNA-1:exon:13482;Parent=Msa0463310-mRNA-1 |
| chr3_3 | exon | 62646404 | 62646600 | 62646404 | ID=Msa0463310-mRNA-1:exon:13483;Parent=Msa0463310-mRNA-1 |
| chr3_3 | exon | 62646693 | 62646828 | 62646693 | ID=Msa0463310-mRNA-1:exon:13484;Parent=Msa0463310-mRNA-1 |
| chr3_3 | exon | 62646941 | 62647183 | 62646941 | ID=Msa0463310-mRNA-1:exon:13485;Parent=Msa0463310-mRNA-1 |
| chr3_3 | exon | 62647279 | 62647514 | 62647279 | ID=Msa0463310-mRNA-1:exon:13486;Parent=Msa0463310-mRNA-1 |
| chr3_3 | exon | 62647840 | 62647957 | 62647840 | ID=Msa0463310-mRNA-1:exon:13487;Parent=Msa0463310-mRNA-1 |
| chr3_3 | exon | 62648248 | 62648400 | 62648248 | ID=Msa0463310-mRNA-1:exon:13488;Parent=Msa0463310-mRNA-1 |
| chr3_3 | exon | 62648531 | 62648617 | 62648531 | ID=Msa0463310-mRNA-1:exon:13489;Parent=Msa0463310-mRNA-1 |
| chr3_3 | exon | 62649055 | 62649625 | 62649055 | ID=Msa0463310-mRNA-1:exon:13490;Parent=Msa0463310-mRNA-1 |
| chr3_3 | five_prime_UTR | 62644896 | 62645133 | 62644896 | ID=Msa0463310-mRNA-1:five_prime_utr;Parent=Msa0463310-mRNA-1 |
| chr3_3 | CDS | 62645134 | 62645457 | 62645134 | ID=Msa0463310-mRNA-1:cds;Parent=Msa0463310-mRNA-1 |
| chr3_3 | CDS | 62646404 | 62646600 | 62646404 | ID=Msa0463310-mRNA-1:cds;Parent=Msa0463310-mRNA-1 |
| chr3_3 | CDS | 62646693 | 62646828 | 62646693 | ID=Msa0463310-mRNA-1:cds;Parent=Msa0463310-mRNA-1 |
| chr3_3 | CDS | 62646941 | 62647183 | 62646941 | ID=Msa0463310-mRNA-1:cds;Parent=Msa0463310-mRNA-1 |
| chr3_3 | CDS | 62647279 | 62647514 | 62647279 | ID=Msa0463310-mRNA-1:cds;Parent=Msa0463310-mRNA-1 |
| chr3_3 | CDS | 62647840 | 62647957 | 62647840 | ID=Msa0463310-mRNA-1:cds;Parent=Msa0463310-mRNA-1 |
| chr3_3 | CDS | 62648248 | 62648400 | 62648248 | ID=Msa0463310-mRNA-1:cds;Parent=Msa0463310-mRNA-1 |
| chr3_3 | CDS | 62648531 | 62648617 | 62648531 | ID=Msa0463310-mRNA-1:cds;Parent=Msa0463310-mRNA-1 |
| chr3_3 | CDS | 62649055 | 62649348 | 62649055 | ID=Msa0463310-mRNA-1:cds;Parent=Msa0463310-mRNA-1 |
| chr3_3 | three_prime_UTR | 62649349 | 62649625 | 62649349 | ID=Msa0463310-mRNA-1:three_prime_utr;Parent=Msa0463310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
