Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0370300 | XP_003601139.1 | 92.131 | 305 | 18 | 2 | 1 | 300 | 1 | 304 | 0.0 | 539 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0370300 | sp|A2BNE2|GRPE_PROMS | 44.516 | 155 | 86 | 0 | 126 | 280 | 62 | 216 | 3.95e-38 | 137 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0370300 | G7J465 | 92.131 | 305 | 18 | 2 | 1 | 300 | 1 | 304 | 0.0 | 539 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0182940 | Msa0370300 | 0.801134 | 1.038979e-48 | -8.615850e-47 |
| Msa0370300 | Msa1068370 | 0.811205 | 7.865648e-51 | -8.615850e-47 |
| Msa0239400 | Msa0370300 | 0.830823 | 2.363129e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0370300 | MtrunA17_Chr3g0115281 | 92.131 | 305 | 18 | 2 | 1 | 300 | 1 | 304 | 0.0 | 539 |
| Msa0370300 | MtrunA17_Chr7g0254481 | 44.796 | 221 | 118 | 2 | 63 | 279 | 84 | 304 | 7.36e-58 | 189 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0370300 | AT1G36390.1 | 47.266 | 256 | 123 | 3 | 31 | 286 | 31 | 274 | 6.84e-70 | 218 |
| Msa0370300 | AT1G36390.2 | 47.266 | 256 | 123 | 3 | 31 | 286 | 31 | 274 | 6.84e-70 | 218 |
| Msa0370300 | AT5G17710.3 | 49.738 | 191 | 94 | 2 | 90 | 279 | 113 | 302 | 2.85e-55 | 182 |
| Msa0370300 | AT5G17710.1 | 49.738 | 191 | 94 | 2 | 90 | 279 | 113 | 302 | 2.85e-55 | 182 |
| Msa0370300 | AT5G17710.2 | 49.738 | 191 | 94 | 2 | 90 | 279 | 115 | 304 | 3.98e-55 | 182 |
Find 92 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCGTTTCATCATTGAAAA+AGG | 0.177252 | 3_1:+67958016 | Msa0370300:three_prime_UTR |
| TTTCAAGAAAGAACAATTTC+TGG | 0.178679 | 3_1:-67958098 | None:intergenic |
| TGAACGAAATTGGGTGGTTT+TGG | 0.202923 | 3_1:-67955642 | None:intergenic |
| GATAGTGTTGGAGGCGTAAA+AGG | 0.207213 | 3_1:-67955679 | None:intergenic |
| TACGCCTCCAACACTATCTT+AGG | 0.217564 | 3_1:+67955684 | Msa0370300:CDS |
| ACAAGATTTACCAAGCTTAT+TGG | 0.223350 | 3_1:+67955987 | Msa0370300:CDS |
| TAACTTACCAAAGGATTAAA+AGG | 0.227686 | 3_1:-67956423 | None:intergenic |
| AGATGGAAAATGAACGAAAT+TGG | 0.241708 | 3_1:-67955652 | None:intergenic |
| TGAGGAGTCCGAAGTGTTTA+AGG | 0.256357 | 3_1:+67957668 | Msa0370300:CDS |
| TACACTTGAAAAGGAATCTT+TGG | 0.266699 | 3_1:-67955745 | None:intergenic |
| GAAATGCTTCTGTTGTTCTA+TGG | 0.299320 | 3_1:+67957934 | Msa0370300:three_prime_UTR |
| TGTTTGTTGGTTGGTAATTA+CGG | 0.309547 | 3_1:-67955491 | None:intergenic |
| TGAAGAAATAATACAATCTA+AGG | 0.316412 | 3_1:+67956071 | Msa0370300:CDS |
| TTGATGGCTGCTCCAAGGAC+TGG | 0.358588 | 3_1:-67957809 | None:intergenic |
| TACAAGAAAGCCTTTCTTAA+CGG | 0.370413 | 3_1:+67956024 | Msa0370300:CDS |
| TCAGAAAGTATCTAGTTTAT+CGG | 0.373978 | 3_1:+67956116 | Msa0370300:CDS |
| TCAATTCTAGCAGCTGTTGA+TGG | 0.374139 | 3_1:-67957825 | None:intergenic |
| GTTTGTTGGTTGGTAATTAC+GGG | 0.380664 | 3_1:-67955490 | None:intergenic |
| TCTCTCGAATCAATCTCTAT+TGG | 0.404166 | 3_1:+67955575 | Msa0370300:CDS |
| GAGTGCCTGACAAAATATTA+AGG | 0.411237 | 3_1:-67958209 | None:intergenic |
| GCACTTGTGAAGGTTTCCTT+AGG | 0.414176 | 3_1:+67957753 | Msa0370300:CDS |
| AGCAATTTGTAGAGACTTTG+AGG | 0.424003 | 3_1:+67956364 | Msa0370300:CDS |
| CCTAGTTCCACCTGCTTACC+TGG | 0.428365 | 3_1:+67957890 | Msa0370300:three_prime_UTR |
| GAAGCGAAGAGGGAGGAGGT+TGG | 0.430365 | 3_1:-67955723 | None:intergenic |
| AGTGGCATCTACCCAGTCCT+TGG | 0.435806 | 3_1:+67957797 | Msa0370300:CDS |
| GAGGAGGTTGGATTGAGAGT+TGG | 0.441456 | 3_1:-67955711 | None:intergenic |
| CTTTCCATCGCCGTTAAGAA+AGG | 0.448413 | 3_1:-67956034 | None:intergenic |
| GGATTCATGCACGGTGCATA+AGG | 0.449812 | 3_1:+67955457 | Msa0370300:five_prime_UTR |
| TCTGTTGTTCTATGGTATGT+TGG | 0.451289 | 3_1:+67957942 | Msa0370300:three_prime_UTR |
| AGGTTTCTTGCTCAAAGATA+AGG | 0.453331 | 3_1:+67957719 | Msa0370300:CDS |
| GATGGAAAATGAACGAAATT+GGG | 0.454309 | 3_1:-67955651 | None:intergenic |
| GTGAAGGTTTCCTTAGGTCC+CGG | 0.454329 | 3_1:+67957759 | Msa0370300:CDS |
| TGCTCAAAGATAAGGTTGTA+AGG | 0.460819 | 3_1:+67957727 | Msa0370300:CDS |
| ATGTTGTGGAAGTTGTTTGT+TGG | 0.467990 | 3_1:-67955504 | None:intergenic |
| CCAGGTAAGCAGGTGGAACT+AGG | 0.468157 | 3_1:-67957890 | None:intergenic |
| AACTCTACGCATCAAAATCA+TGG | 0.470462 | 3_1:-67958138 | None:intergenic |
| GAGAGAGCGTACACTTGAAA+AGG | 0.470698 | 3_1:-67955754 | None:intergenic |
| ATAGTGTTGGAGGCGTAAAA+GGG | 0.478533 | 3_1:-67955678 | None:intergenic |
| GTGTAGGAAGCAATTATGTT+GGG | 0.482055 | 3_1:+67955436 | None:intergenic |
| GGTGTAGGAAGCAATTATGT+TGG | 0.483605 | 3_1:+67955435 | None:intergenic |
| GGAAAGAATTAGCATTCAAT+CGG | 0.485047 | 3_1:+67956215 | Msa0370300:CDS |
| TGATGGCTGCTCCAAGGACT+GGG | 0.486960 | 3_1:-67957808 | None:intergenic |
| ATCATAGACTATACTCACTT+GGG | 0.505532 | 3_1:-67957966 | None:intergenic |
| ACAACAGATTGAAGCGGAAA+CGG | 0.508186 | 3_1:+67956299 | Msa0370300:CDS |
| AAAACAGACGAGACTCGAAA+TGG | 0.509669 | 3_1:+67955955 | Msa0370300:CDS |
| AAAGCCTTTCTTAACGGCGA+TGG | 0.510023 | 3_1:+67956030 | Msa0370300:CDS |
| TATCAAAATCCGCTTGCAAA+CGG | 0.510414 | 3_1:-67956170 | None:intergenic |
| ACGCCTCCAACACTATCTTA+GGG | 0.513218 | 3_1:+67955685 | Msa0370300:CDS |
| AAGGAAACCTTCACAAGTGC+TGG | 0.513889 | 3_1:-67957750 | None:intergenic |
| TGTGGAAGTTGTTTGTTGGT+TGG | 0.515497 | 3_1:-67955500 | None:intergenic |
| CTTTCTTGTATGCTTTAACA+AGG | 0.523367 | 3_1:-67956011 | None:intergenic |
| TAACAAGATACCAGGTAAGC+AGG | 0.530415 | 3_1:-67957900 | None:intergenic |
| TGAAGGTTTCCTTAGGTCCC+GGG | 0.534603 | 3_1:+67957760 | Msa0370300:CDS |
| GGAATCTTTGGAAGCGAAGA+GGG | 0.541715 | 3_1:-67955733 | None:intergenic |
| GTTTCTGTGGTTGCAACAGT+TGG | 0.545089 | 3_1:+67956396 | Msa0370300:CDS |
| TTAACAAGGACCAATAAGCT+TGG | 0.547746 | 3_1:-67955997 | None:intergenic |
| TTGGTTGGTAATTACGGGAG+CGG | 0.549602 | 3_1:-67955485 | None:intergenic |
| TTTGGAAGCGAAGAGGGAGG+AGG | 0.559427 | 3_1:-67955727 | None:intergenic |
| GAGTCCGAAGTGTTTAAGGA+AGG | 0.560329 | 3_1:+67957672 | Msa0370300:CDS |
| AATCCCTTCCTTAAACACTT+CGG | 0.563851 | 3_1:-67957676 | None:intergenic |
| TGTATTAACGAACGGGACGG+AGG | 0.564312 | 3_1:-67955529 | None:intergenic |
| AGGAATCTTTGGAAGCGAAG+AGG | 0.565783 | 3_1:-67955734 | None:intergenic |
| TATCATAGACTATACTCACT+TGG | 0.567328 | 3_1:-67957967 | None:intergenic |
| GAGGAGTCATCATGTTTCTG+TGG | 0.572246 | 3_1:+67956383 | Msa0370300:CDS |
| TGTAAGGCCAGCACTTGTGA+AGG | 0.574016 | 3_1:+67957743 | Msa0370300:CDS |
| TACAATCTAAGGCAATTGAA+AGG | 0.576919 | 3_1:+67956082 | Msa0370300:CDS |
| GAGGCGTAAAAGGGGCGAGA+TGG | 0.577768 | 3_1:-67955669 | None:intergenic |
| AGCTGTTGATGGCTGCTCCA+AGG | 0.578183 | 3_1:-67957814 | None:intergenic |
| AAACCCTAAGATAGTGTTGG+AGG | 0.580015 | 3_1:-67955688 | None:intergenic |
| TTTGAGCAAGAAACCTCGAC+GGG | 0.582305 | 3_1:-67957712 | None:intergenic |
| ACATGAAGCCGTTGGACGTG+AGG | 0.584494 | 3_1:+67957650 | Msa0370300:CDS |
| TGGAAACCCTAAGATAGTGT+TGG | 0.587421 | 3_1:-67955691 | None:intergenic |
| GCAATATCTCCGTTTGCAAG+CGG | 0.589266 | 3_1:+67956161 | Msa0370300:CDS |
| AGTCCGAAGTGTTTAAGGAA+GGG | 0.590140 | 3_1:+67957673 | Msa0370300:CDS |
| GGAAAATGAACGAAATTGGG+TGG | 0.597271 | 3_1:-67955648 | None:intergenic |
| GTATTAACGAACGGGACGGA+GGG | 0.600955 | 3_1:-67955528 | None:intergenic |
| CTTTAGGAAAAGATGTGAGA+AGG | 0.603142 | 3_1:+67956194 | Msa0370300:CDS |
| TTGCAGATACATGAAGCCGT+TGG | 0.609028 | 3_1:+67957642 | Msa0370300:intron |
| TTCTGTATTAACGAACGGGA+CGG | 0.610149 | 3_1:-67955532 | None:intergenic |
| TTCGGACTCCTCACGTCCAA+CGG | 0.617680 | 3_1:-67957658 | None:intergenic |
| AGTTAAACAACAGATTGAAG+CGG | 0.621582 | 3_1:+67956293 | Msa0370300:CDS |
| ATCTTTGGAAGCGAAGAGGG+AGG | 0.628356 | 3_1:-67955730 | None:intergenic |
| GAAAGTATCTAGTTTATCGG+CGG | 0.637283 | 3_1:+67956119 | Msa0370300:CDS |
| TTTAGCAATAACAAGATACC+AGG | 0.638195 | 3_1:-67957908 | None:intergenic |
| TCATAGACTATACTCACTTG+GGG | 0.638405 | 3_1:-67957965 | None:intergenic |
| TAATACAGAAAATTATACAA+TGG | 0.639822 | 3_1:+67955545 | Msa0370300:exon |
| CTTTGAGCAAGAAACCTCGA+CGG | 0.642365 | 3_1:-67957713 | None:intergenic |
| ATTATGTTGGGATTCATGCA+CGG | 0.642832 | 3_1:+67955448 | Msa0370300:five_prime_UTR |
| CAAGATACCAGGTAAGCAGG+TGG | 0.662145 | 3_1:-67957897 | None:intergenic |
| TAGTGTTGGAGGCGTAAAAG+GGG | 0.663351 | 3_1:-67955677 | None:intergenic |
| ACGGGACGGAGGGTATGTTG+TGG | 0.665197 | 3_1:-67955518 | None:intergenic |
| ATAATTAAAGAATCCCGTCG+AGG | 0.675021 | 3_1:+67957699 | Msa0370300:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATACTATATTTCTTTTTTA+GGG | - | chr3_1:67956973-67956992 | None:intergenic | 10.0% |
| !!! | AAATACTATATTTCTTTTTT+AGG | - | chr3_1:67956974-67956993 | None:intergenic | 10.0% |
| !! | TAAAAAAGAAATATAGTATT+TGG | + | chr3_1:67956973-67956992 | Msa0370300:intron | 10.0% |
| !! | TGAAAAATTTATGAATTTAT+TGG | + | chr3_1:67958055-67958074 | Msa0370300:three_prime_UTR | 10.0% |
| !! | TAATACAGAAAATTATACAA+TGG | + | chr3_1:67955545-67955564 | Msa0370300:exon | 15.0% |
| !!! | ATACTATATTTCTTTTTTAG+GGG | - | chr3_1:67956972-67956991 | None:intergenic | 15.0% |
| !!! | AACAAATTAGTTTTTTTGTT+TGG | + | chr3_1:67957114-67957133 | Msa0370300:intron | 15.0% |
| !!! | ACAAATTAGTTTTTTTGTTT+GGG | + | chr3_1:67957115-67957134 | Msa0370300:intron | 15.0% |
| !!! | AAAAACTGTAATTTGTAATT+TGG | - | chr3_1:67957266-67957285 | None:intergenic | 15.0% |
| !!! | TAATTTTCTGTATTAACGAA+CGG | - | chr3_1:67955540-67955559 | None:intergenic | 20.0% |
| !! | TGAAGAAATAATACAATCTA+AGG | + | chr3_1:67956071-67956090 | Msa0370300:CDS | 20.0% |
| !!! | TTTCAAATTTAACTTACCAA+AGG | - | chr3_1:67956435-67956454 | None:intergenic | 20.0% |
| !! | TTATTAAATAGCATCTATAG+CGG | - | chr3_1:67956679-67956698 | None:intergenic | 20.0% |
| !!! | AAAAATGTTTTTGCAAGAAT+TGG | + | chr3_1:67957081-67957100 | Msa0370300:intron | 20.0% |
| !!! | TTTTGTTTGGGAATTTTATA+CGG | + | chr3_1:67957127-67957146 | Msa0370300:intron | 20.0% |
| !! | TGAAAATGAAAACTAAAATG+TGG | + | chr3_1:67957526-67957545 | Msa0370300:intron | 20.0% |
| !! | AAATTAAACAATAGCAATGT+AGG | - | chr3_1:67957604-67957623 | None:intergenic | 20.0% |
| !!! | GCTATTGTTTAATTTGTTTT+TGG | + | chr3_1:67957609-67957628 | Msa0370300:intron | 20.0% |
| !! | AATTTTCTGTATTAACGAAC+GGG | - | chr3_1:67955539-67955558 | None:intergenic | 25.0% |
| !!! | TCAGAAAGTATCTAGTTTAT+CGG | + | chr3_1:67956116-67956135 | Msa0370300:CDS | 25.0% |
| ! | CATTAAAAAACTTCTGTTGA+TGG | + | chr3_1:67956254-67956273 | Msa0370300:CDS | 25.0% |
| ! | TAACTTACCAAAGGATTAAA+AGG | - | chr3_1:67956426-67956445 | None:intergenic | 25.0% |
| ! | CTGATTTAAATATCGATAGA+AGG | - | chr3_1:67956461-67956480 | None:intergenic | 25.0% |
| ! | ATTATGGATTTATGACTGTA+AGG | + | chr3_1:67956841-67956860 | Msa0370300:intron | 25.0% |
| !! | CTTTTAGTATCTTAAAATCG+TGG | - | chr3_1:67956893-67956912 | None:intergenic | 25.0% |
| !!! | AGATGAGATGTTATTTGTTT+TGG | + | chr3_1:67956919-67956938 | Msa0370300:intron | 25.0% |
| !! | TTTGTTTGGGAATTTTATAC+GGG | + | chr3_1:67957128-67957147 | Msa0370300:intron | 25.0% |
| !! | ATCAAATGACCTTTTCTTTA+TGG | + | chr3_1:67957297-67957316 | Msa0370300:intron | 25.0% |
| ! | TCAAATTAGCCATAAAGAAA+AGG | - | chr3_1:67957309-67957328 | None:intergenic | 25.0% |
| ! | TTTATGGCTAATTTGATTGT+TGG | + | chr3_1:67957313-67957332 | Msa0370300:intron | 25.0% |
| !!! | TCATTTTCAAGCATATAATG+TGG | - | chr3_1:67957515-67957534 | None:intergenic | 25.0% |
| ! | TTTCGTTTCATCATTGAAAA+AGG | + | chr3_1:67958016-67958035 | Msa0370300:three_prime_UTR | 25.0% |
| ! | TTCGTTTCATCATTGAAAAA+GGG | + | chr3_1:67958017-67958036 | Msa0370300:three_prime_UTR | 25.0% |
| ! | TTTCAAGAAAGAACAATTTC+TGG | - | chr3_1:67958101-67958120 | None:intergenic | 25.0% |
| !! | TGTTTGTTGGTTGGTAATTA+CGG | - | chr3_1:67955494-67955513 | None:intergenic | 30.0% |
| GATGGAAAATGAACGAAATT+GGG | - | chr3_1:67955654-67955673 | None:intergenic | 30.0% | |
| AGATGGAAAATGAACGAAAT+TGG | - | chr3_1:67955655-67955674 | None:intergenic | 30.0% | |
| TACACTTGAAAAGGAATCTT+TGG | - | chr3_1:67955748-67955767 | None:intergenic | 30.0% | |
| !! | CTTATTTTCATAAGCTCTTG+GGG | - | chr3_1:67955875-67955894 | None:intergenic | 30.0% |
| !! | GCTTATTTTCATAAGCTCTT+GGG | - | chr3_1:67955876-67955895 | None:intergenic | 30.0% |
| !! | AGCTTATTTTCATAAGCTCT+TGG | - | chr3_1:67955877-67955896 | None:intergenic | 30.0% |
| ACAAGATTTACCAAGCTTAT+TGG | + | chr3_1:67955987-67956006 | Msa0370300:CDS | 30.0% | |
| CTTTCTTGTATGCTTTAACA+AGG | - | chr3_1:67956014-67956033 | None:intergenic | 30.0% | |
| TACAAGAAAGCCTTTCTTAA+CGG | + | chr3_1:67956024-67956043 | Msa0370300:CDS | 30.0% | |
| ! | TACAATCTAAGGCAATTGAA+AGG | + | chr3_1:67956082-67956101 | Msa0370300:CDS | 30.0% |
| !! | AAGCGGATTTTGATAACTTT+AGG | + | chr3_1:67956178-67956197 | Msa0370300:CDS | 30.0% |
| GGAAAGAATTAGCATTCAAT+CGG | + | chr3_1:67956215-67956234 | Msa0370300:CDS | 30.0% | |
| ! | TAAAAAACTTCTGTTGATGG+TGG | + | chr3_1:67956257-67956276 | Msa0370300:CDS | 30.0% |
| AGTTAAACAACAGATTGAAG+CGG | + | chr3_1:67956293-67956312 | Msa0370300:CDS | 30.0% | |
| TTAAATCAGTTACAGACTGT+AGG | + | chr3_1:67956472-67956491 | Msa0370300:intron | 30.0% | |
| TTGTCAAATAGCTACTATAG+TGG | - | chr3_1:67956590-67956609 | None:intergenic | 30.0% | |
| TTGTACCACATAGCATATTA+TGG | + | chr3_1:67956614-67956633 | Msa0370300:intron | 30.0% | |
| TTGTTCCATAATATGCTATG+TGG | - | chr3_1:67956622-67956641 | None:intergenic | 30.0% | |
| CAGATATTTGCTTGTGATTA+TGG | + | chr3_1:67956825-67956844 | Msa0370300:intron | 30.0% | |
| !! | GATTCGACAAAGTTTTATGT+TGG | + | chr3_1:67957009-67957028 | Msa0370300:intron | 30.0% |
| !! | GTTTTTGCAAGAATTGGTTT+TGG | + | chr3_1:67957087-67957106 | Msa0370300:intron | 30.0% |
| TCAACTCAAGTACTATCAAA+AGG | + | chr3_1:67957191-67957210 | Msa0370300:intron | 30.0% | |
| CAACTCAAGTACTATCAAAA+GGG | + | chr3_1:67957192-67957211 | Msa0370300:intron | 30.0% | |
| !!! | CTGTTTTTATGTTATGTCCA+AGG | + | chr3_1:67957218-67957237 | Msa0370300:intron | 30.0% |
| !!! | ATACATCTTACTTTTTCCTC+TGG | + | chr3_1:67957419-67957438 | Msa0370300:intron | 30.0% |
| ! | AAGATATTTTCACTTTCCAG+AGG | - | chr3_1:67957438-67957457 | None:intergenic | 30.0% |
| TCATCTAATATGCCTTCTAT+AGG | - | chr3_1:67957564-67957583 | None:intergenic | 30.0% | |
| !!! | ACTGAAGATTTTTTATTCCC+GGG | - | chr3_1:67957780-67957799 | None:intergenic | 30.0% |
| !!! | CACTGAAGATTTTTTATTCC+CGG | - | chr3_1:67957781-67957800 | None:intergenic | 30.0% |
| TTTAGCAATAACAAGATACC+AGG | - | chr3_1:67957911-67957930 | None:intergenic | 30.0% | |
| ATCATAGACTATACTCACTT+GGG | - | chr3_1:67957969-67957988 | None:intergenic | 30.0% | |
| TATCATAGACTATACTCACT+TGG | - | chr3_1:67957970-67957989 | None:intergenic | 30.0% | |
| ATTATGTTGGGATTCATGCA+CGG | + | chr3_1:67955448-67955467 | Msa0370300:five_prime_UTR | 35.0% | |
| !! | GTTTGTTGGTTGGTAATTAC+GGG | - | chr3_1:67955493-67955512 | None:intergenic | 35.0% |
| ATGTTGTGGAAGTTGTTTGT+TGG | - | chr3_1:67955507-67955526 | None:intergenic | 35.0% | |
| TCTCTCGAATCAATCTCTAT+TGG | + | chr3_1:67955575-67955594 | Msa0370300:CDS | 35.0% | |
| TTAACAAGGACCAATAAGCT+TGG | - | chr3_1:67956000-67956019 | None:intergenic | 35.0% | |
| !! | GAAAGTATCTAGTTTATCGG+CGG | + | chr3_1:67956119-67956138 | Msa0370300:CDS | 35.0% |
| TATCAAAATCCGCTTGCAAA+CGG | - | chr3_1:67956173-67956192 | None:intergenic | 35.0% | |
| ! | CTTTAGGAAAAGATGTGAGA+AGG | + | chr3_1:67956194-67956213 | Msa0370300:CDS | 35.0% |
| AGCAATTTGTAGAGACTTTG+AGG | + | chr3_1:67956364-67956383 | Msa0370300:CDS | 35.0% | |
| TTGAGCAATGTTGTCAATCA+CGG | + | chr3_1:67956511-67956530 | Msa0370300:intron | 35.0% | |
| TTAAAATTCCGCTGCACAAT+AGG | + | chr3_1:67956555-67956574 | Msa0370300:intron | 35.0% | |
| TAAAATTCCGCTGCACAATA+GGG | + | chr3_1:67956556-67956575 | Msa0370300:intron | 35.0% | |
| AATTTCATCACTCGCAATCA+AGG | - | chr3_1:67956702-67956721 | None:intergenic | 35.0% | |
| GATTGCGAGTGATGAAATTA+TGG | + | chr3_1:67956703-67956722 | Msa0370300:intron | 35.0% | |
| AAACCTAGCAAGCTAAACAT+TGG | - | chr3_1:67956731-67956750 | None:intergenic | 35.0% | |
| TAGTATTTGGTCGATGTCAT+AGG | + | chr3_1:67956986-67957005 | Msa0370300:intron | 35.0% | |
| AGTATTTGGTCGATGTCATA+GGG | + | chr3_1:67956987-67957006 | Msa0370300:intron | 35.0% | |
| ! | AATGTGAGTGGAGATTTGTT+TGG | + | chr3_1:67957152-67957171 | Msa0370300:intron | 35.0% |
| ! | ATGTGAGTGGAGATTTGTTT+GGG | + | chr3_1:67957153-67957172 | Msa0370300:intron | 35.0% |
| ! | ACAATTTAGCTCAGAGAATG+TGG | - | chr3_1:67957355-67957374 | None:intergenic | 35.0% |
| GCATATAATGTGGTTGAGAT+TGG | - | chr3_1:67957505-67957524 | None:intergenic | 35.0% | |
| ACATCATTTCTGCCTATAGA+AGG | + | chr3_1:67957549-67957568 | Msa0370300:intron | 35.0% | |
| AATCCCTTCCTTAAACACTT+CGG | - | chr3_1:67957679-67957698 | None:intergenic | 35.0% | |
| ATAATTAAAGAATCCCGTCG+AGG | + | chr3_1:67957699-67957718 | Msa0370300:CDS | 35.0% | |
| AGGTTTCTTGCTCAAAGATA+AGG | + | chr3_1:67957719-67957738 | Msa0370300:CDS | 35.0% | |
| TGCTCAAAGATAAGGTTGTA+AGG | + | chr3_1:67957727-67957746 | Msa0370300:CDS | 35.0% | |
| CGGGAATAAAAAATCTTCAG+TGG | + | chr3_1:67957779-67957798 | Msa0370300:CDS | 35.0% | |
| GAAATGCTTCTGTTGTTCTA+TGG | + | chr3_1:67957934-67957953 | Msa0370300:three_prime_UTR | 35.0% | |
| TCTGTTGTTCTATGGTATGT+TGG | + | chr3_1:67957942-67957961 | Msa0370300:three_prime_UTR | 35.0% | |
| TCATAGACTATACTCACTTG+GGG | - | chr3_1:67957968-67957987 | None:intergenic | 35.0% | |
| AACTCTACGCATCAAAATCA+TGG | - | chr3_1:67958141-67958160 | None:intergenic | 35.0% | |
| ! | GTTTTTACAACATGTAACGC+AGG | + | chr3_1:67958158-67958177 | Msa0370300:three_prime_UTR | 35.0% |
| ! | TGTGGAAGTTGTTTGTTGGT+TGG | - | chr3_1:67955503-67955522 | None:intergenic | 40.0% |
| TTCTGTATTAACGAACGGGA+CGG | - | chr3_1:67955535-67955554 | None:intergenic | 40.0% | |
| ! | TGAACGAAATTGGGTGGTTT+TGG | - | chr3_1:67955645-67955664 | None:intergenic | 40.0% |
| GGAAAATGAACGAAATTGGG+TGG | - | chr3_1:67955651-67955670 | None:intergenic | 40.0% | |
| ! | ATAGTGTTGGAGGCGTAAAA+GGG | - | chr3_1:67955681-67955700 | None:intergenic | 40.0% |
| ! | AAACCCTAAGATAGTGTTGG+AGG | - | chr3_1:67955691-67955710 | None:intergenic | 40.0% |
| TGGAAACCCTAAGATAGTGT+TGG | - | chr3_1:67955694-67955713 | None:intergenic | 40.0% | |
| TGCAAAAACAAGACAGAGAG+AGG | - | chr3_1:67955923-67955942 | None:intergenic | 40.0% | |
| AAAACAGACGAGACTCGAAA+TGG | + | chr3_1:67955955-67955974 | Msa0370300:CDS | 40.0% | |
| ACAACAGATTGAAGCGGAAA+CGG | + | chr3_1:67956299-67956318 | Msa0370300:CDS | 40.0% | |
| ! | TGGCAAGCCTTTTAATCCTT+TGG | + | chr3_1:67956416-67956435 | Msa0370300:CDS | 40.0% |
| ! | ATGTTGTCAATCACGGATTG+CGG | + | chr3_1:67956518-67956537 | Msa0370300:intron | 40.0% |
| !! | GAACCAATGTTTAGCTTGCT+AGG | + | chr3_1:67956725-67956744 | Msa0370300:intron | 40.0% |
| !!! | TAGCTTGCTAGGTTTGCTTT+TGG | + | chr3_1:67956736-67956755 | Msa0370300:intron | 40.0% |
| ! | TTTTATACGGGCAATGTGAG+TGG | + | chr3_1:67957140-67957159 | Msa0370300:intron | 40.0% |
| !! | GTCTTTTGATTGCACTGTCA+CGG | + | chr3_1:67957373-67957392 | Msa0370300:intron | 40.0% |
| !! | TCTTTTGATTGCACTGTCAC+GGG | + | chr3_1:67957374-67957393 | Msa0370300:intron | 40.0% |
| AGATTGGAAAACAAGCAGCA+TGG | - | chr3_1:67957489-67957508 | None:intergenic | 40.0% | |
| ! | AGTCCGAAGTGTTTAAGGAA+GGG | + | chr3_1:67957673-67957692 | Msa0370300:CDS | 40.0% |
| !!! | TTTTTTATTCCCGGGACCTA+AGG | - | chr3_1:67957772-67957791 | None:intergenic | 40.0% |
| TCAATTCTAGCAGCTGTTGA+TGG | - | chr3_1:67957828-67957847 | None:intergenic | 40.0% | |
| TAACAAGATACCAGGTAAGC+AGG | - | chr3_1:67957903-67957922 | None:intergenic | 40.0% | |
| !! | TTGGTTGGTAATTACGGGAG+CGG | - | chr3_1:67955488-67955507 | None:intergenic | 45.0% |
| ! | TAGTGTTGGAGGCGTAAAAG+GGG | - | chr3_1:67955680-67955699 | None:intergenic | 45.0% |
| ! | GATAGTGTTGGAGGCGTAAA+AGG | - | chr3_1:67955682-67955701 | None:intergenic | 45.0% |
| TACGCCTCCAACACTATCTT+AGG | + | chr3_1:67955684-67955703 | Msa0370300:CDS | 45.0% | |
| ACGCCTCCAACACTATCTTA+GGG | + | chr3_1:67955685-67955704 | Msa0370300:CDS | 45.0% | |
| ! | GGAATCTTTGGAAGCGAAGA+GGG | - | chr3_1:67955736-67955755 | None:intergenic | 45.0% |
| ! | AGGAATCTTTGGAAGCGAAG+AGG | - | chr3_1:67955737-67955756 | None:intergenic | 45.0% |
| ! | GAGAGAGCGTACACTTGAAA+AGG | - | chr3_1:67955757-67955776 | None:intergenic | 45.0% |
| AAAGCCTTTCTTAACGGCGA+TGG | + | chr3_1:67956030-67956049 | Msa0370300:CDS | 45.0% | |
| CTTTCCATCGCCGTTAAGAA+AGG | - | chr3_1:67956037-67956056 | None:intergenic | 45.0% | |
| GCAATATCTCCGTTTGCAAG+CGG | + | chr3_1:67956161-67956180 | Msa0370300:CDS | 45.0% | |
| ! | GAGGAGTCATCATGTTTCTG+TGG | + | chr3_1:67956383-67956402 | Msa0370300:CDS | 45.0% |
| GTTTCTGTGGTTGCAACAGT+TGG | + | chr3_1:67956396-67956415 | Msa0370300:CDS | 45.0% | |
| GATATAGCCCTATTGTGCAG+CGG | - | chr3_1:67956566-67956585 | None:intergenic | 45.0% | |
| ! | GAGAATGTGGCAGGAGTATA+GGG | - | chr3_1:67957342-67957361 | None:intergenic | 45.0% |
| ! | AGAGAATGTGGCAGGAGTAT+AGG | - | chr3_1:67957343-67957362 | None:intergenic | 45.0% |
| ! | TTTAGCTCAGAGAATGTGGC+AGG | - | chr3_1:67957351-67957370 | None:intergenic | 45.0% |
| TTGCAGATACATGAAGCCGT+TGG | + | chr3_1:67957642-67957661 | Msa0370300:intron | 45.0% | |
| ! | TGAGGAGTCCGAAGTGTTTA+AGG | + | chr3_1:67957668-67957687 | Msa0370300:CDS | 45.0% |
| ! | GAGTCCGAAGTGTTTAAGGA+AGG | + | chr3_1:67957672-67957691 | Msa0370300:CDS | 45.0% |
| TTTGAGCAAGAAACCTCGAC+GGG | - | chr3_1:67957715-67957734 | None:intergenic | 45.0% | |
| CTTTGAGCAAGAAACCTCGA+CGG | - | chr3_1:67957716-67957735 | None:intergenic | 45.0% | |
| AAGGAAACCTTCACAAGTGC+TGG | - | chr3_1:67957753-67957772 | None:intergenic | 45.0% | |
| GCACTTGTGAAGGTTTCCTT+AGG | + | chr3_1:67957753-67957772 | Msa0370300:CDS | 45.0% | |
| GGATTCATGCACGGTGCATA+AGG | + | chr3_1:67955457-67955476 | Msa0370300:five_prime_UTR | 50.0% | |
| GTATTAACGAACGGGACGGA+GGG | - | chr3_1:67955531-67955550 | None:intergenic | 50.0% | |
| TGTATTAACGAACGGGACGG+AGG | - | chr3_1:67955532-67955551 | None:intergenic | 50.0% | |
| GAGGAGGTTGGATTGAGAGT+TGG | - | chr3_1:67955714-67955733 | None:intergenic | 50.0% | |
| ! | ATCTTTGGAAGCGAAGAGGG+AGG | - | chr3_1:67955733-67955752 | None:intergenic | 50.0% |
| ATGTTATGTCCAAGGCCTCG+TGG | + | chr3_1:67957226-67957245 | Msa0370300:intron | 50.0% | |
| TGTTATGTCCAAGGCCTCGT+GGG | + | chr3_1:67957227-67957246 | Msa0370300:intron | 50.0% | |
| TGTAAGGCCAGCACTTGTGA+AGG | + | chr3_1:67957743-67957762 | Msa0370300:CDS | 50.0% | |
| GTGAAGGTTTCCTTAGGTCC+CGG | + | chr3_1:67957759-67957778 | Msa0370300:CDS | 50.0% | |
| TGAAGGTTTCCTTAGGTCCC+GGG | + | chr3_1:67957760-67957779 | Msa0370300:CDS | 50.0% | |
| CAAGATACCAGGTAAGCAGG+TGG | - | chr3_1:67957900-67957919 | None:intergenic | 50.0% | |
| TTTGGAAGCGAAGAGGGAGG+AGG | - | chr3_1:67955730-67955749 | None:intergenic | 55.0% | |
| ATAGCGGCGCTATAGCGTAG+CGG | - | chr3_1:67956663-67956682 | None:intergenic | 55.0% | |
| ACATGAAGCCGTTGGACGTG+AGG | + | chr3_1:67957650-67957669 | Msa0370300:CDS | 55.0% | |
| TTCGGACTCCTCACGTCCAA+CGG | - | chr3_1:67957661-67957680 | None:intergenic | 55.0% | |
| AGTGGCATCTACCCAGTCCT+TGG | + | chr3_1:67957797-67957816 | Msa0370300:CDS | 55.0% | |
| TGATGGCTGCTCCAAGGACT+GGG | - | chr3_1:67957811-67957830 | None:intergenic | 55.0% | |
| ! | TTGATGGCTGCTCCAAGGAC+TGG | - | chr3_1:67957812-67957831 | None:intergenic | 55.0% |
| !! | AGCTGTTGATGGCTGCTCCA+AGG | - | chr3_1:67957817-67957836 | None:intergenic | 55.0% |
| CCAGGTAAGCAGGTGGAACT+AGG | - | chr3_1:67957893-67957912 | None:intergenic | 55.0% | |
| CCTAGTTCCACCTGCTTACC+TGG | + | chr3_1:67957890-67957909 | Msa0370300:three_prime_UTR | 55.0% | |
| ! | ACGGGACGGAGGGTATGTTG+TGG | - | chr3_1:67955521-67955540 | None:intergenic | 60.0% |
| GAGGCGTAAAAGGGGCGAGA+TGG | - | chr3_1:67955672-67955691 | None:intergenic | 60.0% | |
| GAAGCGAAGAGGGAGGAGGT+TGG | - | chr3_1:67955726-67955745 | None:intergenic | 60.0% | |
| GTTTGCAGCCAAGTCCCACG+AGG | - | chr3_1:67957244-67957263 | None:intergenic | 60.0% | |
| GTCCAAGGCCTCGTGGGACT+TGG | + | chr3_1:67957233-67957252 | Msa0370300:intron | 65.0% | |
| AGCCAAGTCCCACGAGGCCT+TGG | - | chr3_1:67957238-67957257 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 67955444 | 67958220 | 67955444 | ID=Msa0370300;Name=Msa0370300 |
| chr3_1 | mRNA | 67955444 | 67958220 | 67955444 | ID=Msa0370300-mRNA-1;Parent=Msa0370300;Name=Msa0370300-mRNA-1;_AED=0.02;_eAED=0.02;_QI=120|1|1|1|1|1|3|363|300 |
| chr3_1 | exon | 67955444 | 67955764 | 67955444 | ID=Msa0370300-mRNA-1:exon:14121;Parent=Msa0370300-mRNA-1 |
| chr3_1 | exon | 67955946 | 67956437 | 67955946 | ID=Msa0370300-mRNA-1:exon:14122;Parent=Msa0370300-mRNA-1 |
| chr3_1 | exon | 67957648 | 67958220 | 67957648 | ID=Msa0370300-mRNA-1:exon:14123;Parent=Msa0370300-mRNA-1 |
| chr3_1 | five_prime_UTR | 67955444 | 67955563 | 67955444 | ID=Msa0370300-mRNA-1:five_prime_utr;Parent=Msa0370300-mRNA-1 |
| chr3_1 | CDS | 67955564 | 67955764 | 67955564 | ID=Msa0370300-mRNA-1:cds;Parent=Msa0370300-mRNA-1 |
| chr3_1 | CDS | 67955946 | 67956437 | 67955946 | ID=Msa0370300-mRNA-1:cds;Parent=Msa0370300-mRNA-1 |
| chr3_1 | CDS | 67957648 | 67957857 | 67957648 | ID=Msa0370300-mRNA-1:cds;Parent=Msa0370300-mRNA-1 |
| chr3_1 | three_prime_UTR | 67957858 | 67958220 | 67957858 | ID=Msa0370300-mRNA-1:three_prime_utr;Parent=Msa0370300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
