AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0182940


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0182940 MtrunA17_Chr1g0211871 93.989 183 7 2 1 181 1 181 1.08e-115 325
Msa0182940 MtrunA17_Chr2g0317731 34.965 143 84 3 37 175 36 173 5.22e-25 95.5
Msa0182940 MtrunA17_Chr3g0125821 38.739 111 56 3 70 173 70 175 1.64e-24 94.0
Msa0182940 MtrunA17_Chr1g0201781 39.000 100 59 1 76 175 68 165 9.59e-24 92.0
Msa0182940 MtrunA17_Chr4g0044731 45.122 82 45 0 71 152 66 147 2.22e-23 90.9
Msa0182940 MtrunA17_Chr8g0360031 35.780 109 62 2 70 175 73 176 2.79e-21 85.9
Msa0182940 MtrunA17_Chr7g0216481 38.824 85 48 2 85 166 47 130 2.26e-17 74.3
Msa0182940 MtrunA17_Chr2g0317721 37.209 86 54 0 67 152 38 123 1.03e-15 70.5
Msa0182940 MtrunA17_Chr2g0317711 38.372 86 53 0 67 152 38 123 4.17e-15 68.9
Msa0182940 MtrunA17_Chr1g0155721 36.449 107 53 5 76 173 15 115 2.06e-14 66.2
Msa0182940 MtrunA17_Chr5g0438731 32.353 102 65 1 72 169 194 295 4.87e-14 69.3
Msa0182940 MtrunA17_Chr5g0438731 36.036 111 66 3 70 176 61 170 7.72e-14 68.6
Msa0182940 MtrunA17_Chr1g0194961 39.535 86 46 2 78 157 157 242 1.31e-13 67.8
Msa0182940 MtrunA17_Chr1g0164481 32.632 95 62 1 80 172 84 178 1.80e-13 65.5
Msa0182940 MtrunA17_Chr2g0287471 34.951 103 64 1 70 169 30 132 2.37e-13 67.0
Msa0182940 MtrunA17_Chr3g0142051 37.209 86 47 3 85 164 27 111 5.97e-13 62.4
Msa0182940 MtrunA17_Chr2g0317701 34.375 96 62 1 58 152 34 129 1.72e-12 62.0
Msa0182940 MtrunA17_Chr8g0393201 35.294 85 53 2 69 152 231 314 2.33e-11 61.2
Msa0182940 MtrunA17_Chr5g0404831 31.343 67 45 1 84 150 28 93 2.82e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0182940 AT1G50320.1 54.497 189 71 5 1 181 1 182 7.39e-63 192
Msa0182940 AT1G76760.1 41.414 99 56 1 78 176 73 169 1.80e-25 97.1
Msa0182940 AT1G43560.1 39.394 99 58 1 78 176 68 164 2.24e-22 88.6
Msa0182940 AT1G03680.1 36.364 110 62 2 69 175 75 179 5.58e-22 88.2
Msa0182940 AT2G15570.1 41.463 82 48 0 71 152 69 150 1.01e-20 84.7
Msa0182940 AT2G15570.2 41.463 82 48 0 71 152 70 151 1.02e-20 84.7
Msa0182940 AT3G15360.1 32.812 128 77 1 25 152 52 170 1.14e-20 85.1
Msa0182940 AT4G03520.1 35.780 109 62 2 70 175 82 185 7.87e-20 82.4
Msa0182940 AT1G04980.1 36.937 111 66 2 70 177 34 143 9.01e-16 74.7
Msa0182940 AT1G04980.1 31.373 102 66 1 72 169 171 272 6.53e-12 63.5
Msa0182940 AT5G39950.1 37.209 86 49 3 77 159 39 122 1.28e-15 70.1
Msa0182940 AT2G32920.1 35.922 103 63 1 70 169 32 134 3.15e-15 73.2
Msa0182940 AT5G60640.3 40.000 100 55 3 73 168 108 206 1.10e-13 68.6
Msa0182940 AT2G47470.1 34.375 128 71 4 36 157 116 236 1.21e-13 68.2
Msa0182940 AT2G47470.4 34.375 128 71 4 36 157 116 236 1.21e-13 68.2
Msa0182940 AT2G47470.2 34.375 128 71 4 36 157 116 236 1.26e-13 67.4
Msa0182940 AT2G47470.3 34.375 128 71 4 36 157 116 236 1.47e-13 67.8
Msa0182940 AT5G60640.1 40.000 100 55 3 73 168 108 206 1.51e-13 68.2
Msa0182940 AT5G60640.2 40.000 100 55 3 73 168 108 206 2.04e-13 67.8
Msa0182940 AT1G77510.1 36.538 104 55 5 73 166 34 136 5.74e-13 66.6
Msa0182940 AT3G06730.1 34.737 95 59 2 70 162 77 170 8.52e-13 63.9
Msa0182940 AT5G42980.1 38.235 68 41 1 84 151 25 91 1.12e-12 62.0
Msa0182940 AT1G69880.1 35.714 84 52 2 70 152 42 124 2.57e-11 59.3
Msa0182940 AT1G19730.1 29.412 85 57 1 84 165 26 110 2.81e-11 58.5
Msa0182940 AT3G54960.2 36.905 84 49 2 89 168 119 202 5.37e-11 60.8
Msa0182940 AT1G45145.1 29.070 86 59 2 65 150 7 90 6.08e-11 57.4

Find 67 sgRNAs with CRISPR-Local

Find 165 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGAAGAGTATAAAGTTTA+TGG 0.088645 1_4:+71724370 Msa0182940:CDS
ACAACATTTGGATGCTTTAT+TGG 0.139367 1_4:+71724477 Msa0182940:CDS
TGTGGCCACAAAATAATATT+AGG 0.156330 1_4:+71722339 Msa0182940:five_prime_UTR
AAATCGGTCTGATCTGTTTA+TGG 0.190640 1_4:+71724730 Msa0182940:three_prime_UTR
CCCCGTTCTTGAAGAGTATC+AGG 0.263376 1_4:-71724402 None:intergenic
GCACCTTCCTTCCTGCTTCC+TGG 0.279114 1_4:-71724433 None:intergenic
GTGGCCACAAAATAATATTA+GGG 0.303765 1_4:+71722340 Msa0182940:five_prime_UTR
GGTGAAACTTAAACAACATT+TGG 0.344190 1_4:+71724465 Msa0182940:CDS
CCCTGATACTCTTCAAGAAC+GGG 0.388833 1_4:+71724401 Msa0182940:CDS
TCAATACGGTTTCCTTGAAC+TGG 0.391435 1_4:-71722694 None:intergenic
ATTGATATGCTAAATGAAAC+AGG 0.402924 1_4:-71724582 None:intergenic
TCTATATTTCCTACTTCCAT+TGG 0.406104 1_4:+71722424 Msa0182940:five_prime_UTR
AAGAACGGGGAGGAATTTCC+AGG 0.409346 1_4:+71724415 Msa0182940:CDS
GTACAATTTCAAATTAAAAT+CGG 0.426994 1_4:+71724714 Msa0182940:three_prime_UTR
TCTAACTCTCCCAACCGTTC+CGG 0.449468 1_4:+71722502 Msa0182940:CDS
CCGTTTGATCACTCCAGCTA+TGG 0.459141 1_4:+71722769 Msa0182940:CDS
TAGTTGAATTCGTTGCTACT+TGG 0.466999 1_4:+71722735 Msa0182940:CDS
ATTGTACGAACCGGAACGGT+TGG 0.469903 1_4:-71722512 None:intergenic
TTGTACGAACCGGAACGGTT+GGG 0.477965 1_4:-71722511 None:intergenic
TGAGCTATGGATTCCATAGC+TGG 0.482178 1_4:-71722782 None:intergenic
AGAAAGAGGTACCTGAGCTA+TGG 0.486986 1_4:-71722795 None:intergenic
GCAACGAATTCAACTAAAAC+CGG 0.491722 1_4:-71722728 None:intergenic
GTTGAGGTCACCGTATCCAT+TGG 0.493134 1_4:-71722464 None:intergenic
CGTATTGAAATCTGAGCGTC+CGG 0.497098 1_4:+71722709 Msa0182940:CDS
ATTTCCTACTTCCATTGGCT+CGG 0.498895 1_4:+71722429 Msa0182940:five_prime_UTR
TAAGGGAAGAGATGAGGATA+CGG 0.499243 1_4:-71722549 None:intergenic
TGACCGGTGAGAACGTGGTA+AGG 0.505991 1_4:-71722567 None:intergenic
AGAGTCTTTGCCGAGTTGAC+CGG 0.508220 1_4:-71722583 None:intergenic
TATACTCTTCAATTAGCTGC+GGG 0.511786 1_4:-71724360 None:intergenic
GGGAGGAATTTCCAGGAAGC+AGG 0.512537 1_4:+71724422 Msa0182940:CDS
CCGCAACTCACTGTAAACTT+AGG 0.512897 1_4:-71722650 None:intergenic
AATCAATGAAAGCCAGTTCA+AGG 0.512971 1_4:+71722682 Msa0182940:CDS
TTCCCTTACCACGTTCTCAC+CGG 0.519028 1_4:+71722564 Msa0182940:CDS
TACAGTGAGTTGCGGTATCA+CGG 0.521048 1_4:+71722658 Msa0182940:CDS
AGCTATGGAATCCATAGCTC+AGG 0.524162 1_4:+71722784 Msa0182940:CDS
TAGGAAATATAGATAGATAA+CGG 0.531654 1_4:-71722414 None:intergenic
CACGTTCTCACCGGTCAACT+CGG 0.532357 1_4:+71722573 Msa0182940:CDS
TGAGGATACGGAGATTGAAG+AGG 0.544293 1_4:-71722537 None:intergenic
CGGACGCTCAGATTTCAATA+CGG 0.547344 1_4:-71722708 None:intergenic
CCATAGCTGGAGTGATCAAA+CGG 0.549337 1_4:-71722769 None:intergenic
GAAGAGGTAATTGTACGAAC+CGG 0.550130 1_4:-71722521 None:intergenic
TTTCAATGAAGCCGAGCCAA+TGG 0.567349 1_4:-71722440 None:intergenic
CCTAAGTTTACAGTGAGTTG+CGG 0.570949 1_4:+71722650 Msa0182940:CDS
TCATTGAAATCCAATGGATA+CGG 0.572041 1_4:+71722454 Msa0182940:exon
ACGTGGTAAGGGAAGAGATG+AGG 0.572348 1_4:-71722555 None:intergenic
ACCCTGATACTCTTCAAGAA+CGG 0.577296 1_4:+71724400 Msa0182940:CDS
TTCTTGAAGAGTATCAGGGT+TGG 0.579923 1_4:-71724397 None:intergenic
CCCGTTCTTGAAGAGTATCA+GGG 0.580271 1_4:-71724401 None:intergenic
TTTCCAGGAAGCAGGAAGGA+AGG 0.591083 1_4:+71724430 Msa0182940:CDS
GAAGCCGAGCCAATGGAAGT+AGG 0.593900 1_4:-71722433 None:intergenic
CACTTTCGAACATACGAGGA+TGG 0.596506 1_4:-71722378 None:intergenic
GACCGGTGAGAACGTGGTAA+GGG 0.599839 1_4:-71722566 None:intergenic
TCGGCTTCATTGAAATCCAA+TGG 0.601026 1_4:+71722448 Msa0182940:exon
GTATATATTATACACTTCAA+AGG 0.602656 1_4:-71724687 None:intergenic
CGAGTTGACCGGTGAGAACG+TGG 0.605237 1_4:-71722572 None:intergenic
GAATTCGTTGCTACTTGGTG+CGG 0.606167 1_4:+71722740 Msa0182940:CDS
TTATACTCTTCAATTAGCTG+CGG 0.611346 1_4:-71724361 None:intergenic
TGGCCACAAAATAATATTAG+GGG 0.628231 1_4:+71722341 Msa0182940:five_prime_UTR
AGTGAGCGAAGCTGAAGTTG+AGG 0.632954 1_4:-71722480 None:intergenic
GGAATTTCCAGGAAGCAGGA+AGG 0.646284 1_4:+71724426 Msa0182940:CDS
GGCCACAAAATAATATTAGG+GGG 0.668231 1_4:+71722342 Msa0182940:five_prime_UTR
GGTAATTGTACGAACCGGAA+CGG 0.669877 1_4:-71722516 None:intergenic
GAAGGAAGGTGCAATTACAA+AGG 0.680704 1_4:+71724444 Msa0182940:CDS
GCTGGAGTGATCAAACGGCA+AGG 0.683277 1_4:-71722764 None:intergenic
CCTGATACTCTTCAAGAACG+GGG 0.694186 1_4:+71724402 Msa0182940:CDS
TGATCACTTTCGAACATACG+AGG 0.699971 1_4:-71722382 None:intergenic
GATACTCTTCAAGAACGGGG+AGG 0.730377 1_4:+71724405 Msa0182940:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTAATAGATAGTTATTG+AGG + chr1_4:71724114-71724133 Msa0182940:intron 15.0%
!! GTACAATTTCAAATTAAAAT+CGG + chr1_4:71724714-71724733 Msa0182940:three_prime_UTR 15.0%
!! TAGGAAATATAGATAGATAA+CGG - chr1_4:71722417-71722436 None:intergenic 20.0%
!!! ACTTTTTATTTTGTTTTTGC+CGG + chr1_4:71722827-71722846 Msa0182940:intron 20.0%
!!! ATTTTTTTAAACTCAGTATC+CGG - chr1_4:71722849-71722868 None:intergenic 20.0%
!!! AGCTCTAAAATCATTTATAT+TGG + chr1_4:71723013-71723032 Msa0182940:intron 20.0%
!!! GCTCTAAAATCATTTATATT+GGG + chr1_4:71723014-71723033 Msa0182940:intron 20.0%
!!! CTTCAATTTTATTAAGAGAA+AGG + chr1_4:71723810-71723829 Msa0182940:intron 20.0%
!!! ATTGAAGAGTATAAAGTTTA+TGG + chr1_4:71724370-71724389 Msa0182940:CDS 20.0%
!! GTATATATTATACACTTCAA+AGG - chr1_4:71724690-71724709 None:intergenic 20.0%
!! ACAATGTAAATTTTTGTGTG+TGG + chr1_4:71723129-71723148 Msa0182940:intron 25.0%
!! CAATGTAAATTTTTGTGTGT+GGG + chr1_4:71723130-71723149 Msa0182940:intron 25.0%
!! AATGTAAATTTTTGTGTGTG+GGG + chr1_4:71723131-71723150 Msa0182940:intron 25.0%
! TTTCAAATTATTAGCTGTGT+CGG + chr1_4:71723471-71723490 Msa0182940:intron 25.0%
! TTAAATCAGACCATCAATTT+GGG - chr1_4:71723860-71723879 None:intergenic 25.0%
!!! GTTAGTCGTTTATCTTTTTT+AGG + chr1_4:71724035-71724054 Msa0182940:intron 25.0%
!! TATTACTAGTTTCCCAAAAA+TGG - chr1_4:71724552-71724571 None:intergenic 25.0%
!!! TTTTTGGGAAACTAGTAATA+TGG + chr1_4:71724552-71724571 Msa0182940:three_prime_UTR 25.0%
!!! TTTTGGGAAACTAGTAATAT+GGG + chr1_4:71724553-71724572 Msa0182940:three_prime_UTR 25.0%
! ATTGATATGCTAAATGAAAC+AGG - chr1_4:71724585-71724604 None:intergenic 25.0%
TGTGGCCACAAAATAATATT+AGG + chr1_4:71722339-71722358 Msa0182940:five_prime_UTR 30.0%
GTGGCCACAAAATAATATTA+GGG + chr1_4:71722340-71722359 Msa0182940:five_prime_UTR 30.0%
TGGCCACAAAATAATATTAG+GGG + chr1_4:71722341-71722360 Msa0182940:five_prime_UTR 30.0%
ATAATATTAGGGGGAGTTAT+CGG + chr1_4:71722351-71722370 Msa0182940:five_prime_UTR 30.0%
TCTATATTTCCTACTTCCAT+TGG + chr1_4:71722424-71722443 Msa0182940:five_prime_UTR 30.0%
TCATTGAAATCCAATGGATA+CGG + chr1_4:71722454-71722473 Msa0182940:exon 30.0%
AAAGTTAGAAAGAGAGAAAG+AGG - chr1_4:71722812-71722831 None:intergenic 30.0%
CATGCAATTCACTGTTTAAT+TGG + chr1_4:71722911-71722930 Msa0182940:intron 30.0%
AAATCATTTATATTGGGCTG+CGG + chr1_4:71723020-71723039 Msa0182940:intron 30.0%
! TAGACTATAACACCTCTTTT+GGG + chr1_4:71723080-71723099 Msa0182940:intron 30.0%
! ATGTAAATTTTTGTGTGTGG+GGG + chr1_4:71723132-71723151 Msa0182940:intron 30.0%
! ATGTTTCTATCTTCGATTCA+TGG + chr1_4:71723170-71723189 Msa0182940:intron 30.0%
CGAAAATTATGTGATCTTTC+AGG + chr1_4:71723258-71723277 Msa0182940:intron 30.0%
TAGTCTACAATCATACTACA+AGG - chr1_4:71723300-71723319 None:intergenic 30.0%
AACAAAATGTCTTAAGCTTC+TGG + chr1_4:71723346-71723365 Msa0182940:intron 30.0%
TTCAGTCTAATTACAAGTGT+CGG - chr1_4:71723441-71723460 None:intergenic 30.0%
CTTAAATCAGACCATCAATT+TGG - chr1_4:71723861-71723880 None:intergenic 30.0%
! CAAATTGATGGTCTGATTTA+AGG + chr1_4:71723859-71723878 Msa0182940:intron 30.0%
ATTATCATTCATACGAATGC+AGG + chr1_4:71724065-71724084 Msa0182940:intron 30.0%
! TGATATGATATTACTAGCCT+AGG + chr1_4:71724221-71724240 Msa0182940:intron 30.0%
AGCTATTCTTAAACGTTCTT+TGG + chr1_4:71724244-71724263 Msa0182940:intron 30.0%
GCTATTCTTAAACGTTCTTT+GGG + chr1_4:71724245-71724264 Msa0182940:intron 30.0%
ACTCTCATACATTATATTGC+AGG + chr1_4:71724291-71724310 Msa0182940:intron 30.0%
TTATACTCTTCAATTAGCTG+CGG - chr1_4:71724364-71724383 None:intergenic 30.0%
GGTGAAACTTAAACAACATT+TGG + chr1_4:71724465-71724484 Msa0182940:CDS 30.0%
ACAACATTTGGATGCTTTAT+TGG + chr1_4:71724477-71724496 Msa0182940:CDS 30.0%
! TTCCAAATTGTGACCATTTT+TGG + chr1_4:71724536-71724555 Msa0182940:three_prime_UTR 30.0%
!! TCCAAATTGTGACCATTTTT+GGG + chr1_4:71724537-71724556 Msa0182940:three_prime_UTR 30.0%
!!! CTCACTTGTTTTTTGTACTA+AGG + chr1_4:71724763-71724782 Msa0182940:three_prime_UTR 30.0%
GGCCACAAAATAATATTAGG+GGG + chr1_4:71722342-71722361 Msa0182940:five_prime_UTR 35.0%
!! CTCCCCCTAATATTATTTTG+TGG - chr1_4:71722347-71722366 None:intergenic 35.0%
AATCAATGAAAGCCAGTTCA+AGG + chr1_4:71722682-71722701 Msa0182940:CDS 35.0%
GCAACGAATTCAACTAAAAC+CGG - chr1_4:71722731-71722750 None:intergenic 35.0%
TAGTTGAATTCGTTGCTACT+TGG + chr1_4:71722735-71722754 Msa0182940:CDS 35.0%
CTGTGCGTAGATTTAAATTG+CGG + chr1_4:71722941-71722960 Msa0182940:intron 35.0%
! GCAAATTCAACAGCATTTTG+CGG - chr1_4:71722983-71723002 None:intergenic 35.0%
! GTAGACTATAACACCTCTTT+TGG + chr1_4:71723079-71723098 Msa0182940:intron 35.0%
! AGACTATAACACCTCTTTTG+GGG + chr1_4:71723081-71723100 Msa0182940:intron 35.0%
ACGTTAGAAGAATGACTTTG+AGG + chr1_4:71723582-71723601 Msa0182940:intron 35.0%
!!! AATTTGGGTTTTGGACAAGA+GGG - chr1_4:71723845-71723864 None:intergenic 35.0%
TTGTCCAAAACCCAAATTGA+TGG + chr1_4:71723847-71723866 Msa0182940:intron 35.0%
TAATAAGCCTCTGTTTGGTA+TGG - chr1_4:71724003-71724022 None:intergenic 35.0%
AGTACTAATAAGCCTCTGTT+TGG - chr1_4:71724008-71724027 None:intergenic 35.0%
GCAAATGATGTCTGCTTTAA+GGG - chr1_4:71724153-71724172 None:intergenic 35.0%
TGCAAATGATGTCTGCTTTA+AGG - chr1_4:71724154-71724173 None:intergenic 35.0%
AACGTTTAAGAATAGCTCCT+AGG - chr1_4:71724241-71724260 None:intergenic 35.0%
TATACTCTTCAATTAGCTGC+GGG - chr1_4:71724363-71724382 None:intergenic 35.0%
TCCCAAAAATGGTCACAATT+TGG - chr1_4:71724541-71724560 None:intergenic 35.0%
AAATCGGTCTGATCTGTTTA+TGG + chr1_4:71724730-71724749 Msa0182940:three_prime_UTR 35.0%
TGATCACTTTCGAACATACG+AGG - chr1_4:71722385-71722404 None:intergenic 40.0%
! ATTTCCTACTTCCATTGGCT+CGG + chr1_4:71722429-71722448 Msa0182940:five_prime_UTR 40.0%
TCGGCTTCATTGAAATCCAA+TGG + chr1_4:71722448-71722467 Msa0182940:exon 40.0%
GAAGAGGTAATTGTACGAAC+CGG - chr1_4:71722524-71722543 None:intergenic 40.0%
TAAGGGAAGAGATGAGGATA+CGG - chr1_4:71722552-71722571 None:intergenic 40.0%
CCTAAGTTTACAGTGAGTTG+CGG + chr1_4:71722650-71722669 Msa0182940:CDS 40.0%
TCAATACGGTTTCCTTGAAC+TGG - chr1_4:71722697-71722716 None:intergenic 40.0%
TGCTGTTGAATTTGCAGTAG+TGG + chr1_4:71722988-71723007 Msa0182940:intron 40.0%
! GACTATAACACCTCTTTTGG+GGG + chr1_4:71723082-71723101 Msa0182940:intron 40.0%
TCTTCGATTCATGGTACATG+TGG + chr1_4:71723179-71723198 Msa0182940:intron 40.0%
AAGCCTATGAAACACGGATA+CGG - chr1_4:71723532-71723551 None:intergenic 40.0%
AAGTCATTCTTCTAACGTCG+CGG - chr1_4:71723580-71723599 None:intergenic 40.0%
ATTAGTGTTTGCTTGCGAGT+TGG + chr1_4:71723649-71723668 Msa0182940:intron 40.0%
TTAGTGTTTGCTTGCGAGTT+GGG + chr1_4:71723650-71723669 Msa0182940:intron 40.0%
!!! CAATTTGGGTTTTGGACAAG+AGG - chr1_4:71723846-71723865 None:intergenic 40.0%
!! CAGACCATCAATTTGGGTTT+TGG - chr1_4:71723854-71723873 None:intergenic 40.0%
GGTGTGTTAGCATTCATGAT+AGG + chr1_4:71723880-71723899 Msa0182940:intron 40.0%
TAGCATTCATGATAGGATGC+CGG + chr1_4:71723887-71723906 Msa0182940:intron 40.0%
!! GCTTTAAGGGTAGAATCTCA+GGG - chr1_4:71724140-71724159 None:intergenic 40.0%
!! TGCTTTAAGGGTAGAATCTC+AGG - chr1_4:71724141-71724160 None:intergenic 40.0%
!! TTCTTGAAGAGTATCAGGGT+TGG - chr1_4:71724400-71724419 None:intergenic 40.0%
ACCCTGATACTCTTCAAGAA+CGG + chr1_4:71724400-71724419 Msa0182940:CDS 40.0%
! GAAGGAAGGTGCAATTACAA+AGG + chr1_4:71724444-71724463 Msa0182940:CDS 40.0%
!! GAATGACACAGTTTTGTAGC+AGG + chr1_4:71724816-71724835 Msa0182940:three_prime_UTR 40.0%
CACTTTCGAACATACGAGGA+TGG - chr1_4:71722381-71722400 None:intergenic 45.0%
TTTCAATGAAGCCGAGCCAA+TGG - chr1_4:71722443-71722462 None:intergenic 45.0%
GGTAATTGTACGAACCGGAA+CGG - chr1_4:71722519-71722538 None:intergenic 45.0%
TGAGGATACGGAGATTGAAG+AGG - chr1_4:71722540-71722559 None:intergenic 45.0%
CCGCAACTCACTGTAAACTT+AGG - chr1_4:71722653-71722672 None:intergenic 45.0%
TACAGTGAGTTGCGGTATCA+CGG + chr1_4:71722658-71722677 Msa0182940:CDS 45.0%
CGGACGCTCAGATTTCAATA+CGG - chr1_4:71722711-71722730 None:intergenic 45.0%
CGTATTGAAATCTGAGCGTC+CGG + chr1_4:71722709-71722728 Msa0182940:CDS 45.0%
! GAATTCGTTGCTACTTGGTG+CGG + chr1_4:71722740-71722759 Msa0182940:CDS 45.0%
CCATAGCTGGAGTGATCAAA+CGG - chr1_4:71722772-71722791 None:intergenic 45.0%
TGAGCTATGGATTCCATAGC+TGG - chr1_4:71722785-71722804 None:intergenic 45.0%
AGCTATGGAATCCATAGCTC+AGG + chr1_4:71722784-71722803 Msa0182940:CDS 45.0%
!! AGAAAGAGGTACCTGAGCTA+TGG - chr1_4:71722798-71722817 None:intergenic 45.0%
TTATGCAACACCCCCAAAAG+AGG - chr1_4:71723095-71723114 None:intergenic 45.0%
!! GGGGTGTTGCATAAGACAAT+AGG + chr1_4:71723101-71723120 Msa0182940:intron 45.0%
ACATGTGGATTTCACTCGAC+AGG + chr1_4:71723194-71723213 Msa0182940:intron 45.0%
!! CTTTCAGGTGCTGCTTTGAT+TGG + chr1_4:71723273-71723292 Msa0182940:intron 45.0%
! AAGCTTCTGGCTATGAAGCA+CGG + chr1_4:71723359-71723378 Msa0182940:intron 45.0%
ATGAAACACGGATACGGACA+TGG - chr1_4:71723526-71723545 None:intergenic 45.0%
TGTCCGTATCCGTGTTTCAT+AGG + chr1_4:71723526-71723545 Msa0182940:intron 45.0%
ATCCGTGTTTCATAGGCTTC+TGG + chr1_4:71723533-71723552 Msa0182940:intron 45.0%
CACCAGAAGCCTATGAAACA+CGG - chr1_4:71723538-71723557 None:intergenic 45.0%
!!! CTTGCGAGTTGGGTTTTGAA+GGG + chr1_4:71723660-71723679 Msa0182940:intron 45.0%
!! TTTTGAAGGGAGGACTTTGG+AGG + chr1_4:71723673-71723692 Msa0182940:intron 45.0%
TTTGAAGGGAGGACTTTGGA+GGG + chr1_4:71723674-71723693 Msa0182940:intron 45.0%
AGCATTCATGATAGGATGCC+GGG + chr1_4:71723888-71723907 Msa0182940:intron 45.0%
CAAATCAACACACAGTGACC+CGG - chr1_4:71723909-71723928 None:intergenic 45.0%
!! CCCGTTCTTGAAGAGTATCA+GGG - chr1_4:71724404-71724423 None:intergenic 45.0%
CCCTGATACTCTTCAAGAAC+GGG + chr1_4:71724401-71724420 Msa0182940:CDS 45.0%
CCTGATACTCTTCAAGAACG+GGG + chr1_4:71724402-71724421 Msa0182940:CDS 45.0%
!!! ATTTGATATTTTTAAAAAAT+TGG + chr1_4:71723718-71723737 Msa0182940:intron 5.0%
GTTGAGGTCACCGTATCCAT+TGG - chr1_4:71722467-71722486 None:intergenic 50.0%
AGTGAGCGAAGCTGAAGTTG+AGG - chr1_4:71722483-71722502 None:intergenic 50.0%
TCTAACTCTCCCAACCGTTC+CGG + chr1_4:71722502-71722521 Msa0182940:CDS 50.0%
TTGTACGAACCGGAACGGTT+GGG - chr1_4:71722514-71722533 None:intergenic 50.0%
ATTGTACGAACCGGAACGGT+TGG - chr1_4:71722515-71722534 None:intergenic 50.0%
ACGTGGTAAGGGAAGAGATG+AGG - chr1_4:71722558-71722577 None:intergenic 50.0%
TTCCCTTACCACGTTCTCAC+CGG + chr1_4:71722564-71722583 Msa0182940:CDS 50.0%
! AGAGTCTTTGCCGAGTTGAC+CGG - chr1_4:71722586-71722605 None:intergenic 50.0%
CCGTTTGATCACTCCAGCTA+TGG + chr1_4:71722769-71722788 Msa0182940:CDS 50.0%
! CAGCATTTTGCGGTTTGCAG+CGG - chr1_4:71722973-71722992 None:intergenic 50.0%
CACGGACACTCCTCGTATTA+GGG + chr1_4:71723377-71723396 Msa0182940:intron 50.0%
ACGGACACTCCTCGTATTAG+GGG + chr1_4:71723378-71723397 Msa0182940:intron 50.0%
!! TACAAGTGTCGGTGTCGTGT+CGG - chr1_4:71723430-71723449 None:intergenic 50.0%
!! GCTTGCGAGTTGGGTTTTGA+AGG + chr1_4:71723659-71723678 Msa0182940:intron 50.0%
!!! GGGTTTTGAAGGGAGGACTT+TGG + chr1_4:71723670-71723689 Msa0182940:intron 50.0%
!!! TGGGTTTTGGACAAGAGGGA+GGG - chr1_4:71723841-71723860 None:intergenic 50.0%
!!! TTGGGTTTTGGACAAGAGGG+AGG - chr1_4:71723842-71723861 None:intergenic 50.0%
GCTACTGCCATACCAAACAG+AGG + chr1_4:71723993-71724012 Msa0182940:intron 50.0%
!! CCCCGTTCTTGAAGAGTATC+AGG - chr1_4:71724405-71724424 None:intergenic 50.0%
GATACTCTTCAAGAACGGGG+AGG + chr1_4:71724405-71724424 Msa0182940:CDS 50.0%
AAGAACGGGGAGGAATTTCC+AGG + chr1_4:71724415-71724434 Msa0182940:CDS 50.0%
GGAATTTCCAGGAAGCAGGA+AGG + chr1_4:71724426-71724445 Msa0182940:CDS 50.0%
TTTCCAGGAAGCAGGAAGGA+AGG + chr1_4:71724430-71724449 Msa0182940:CDS 50.0%
GAAGCCGAGCCAATGGAAGT+AGG - chr1_4:71722436-71722455 None:intergenic 55.0%
GACCGGTGAGAACGTGGTAA+GGG - chr1_4:71722569-71722588 None:intergenic 55.0%
TGACCGGTGAGAACGTGGTA+AGG - chr1_4:71722570-71722589 None:intergenic 55.0%
CACGTTCTCACCGGTCAACT+CGG + chr1_4:71722573-71722592 Msa0182940:CDS 55.0%
GCTGGAGTGATCAAACGGCA+AGG - chr1_4:71722767-71722786 None:intergenic 55.0%
GCACGGACACTCCTCGTATT+AGG + chr1_4:71723376-71723395 Msa0182940:intron 55.0%
!! TCCTCGTATTAGGGGTGTCC+CGG + chr1_4:71723386-71723405 Msa0182940:intron 55.0%
!! TATTAGGGGTGTCCCGGTGT+CGG + chr1_4:71723392-71723411 Msa0182940:intron 55.0%
CATGGACGAGGGACACAACA+CGG - chr1_4:71723508-71723527 None:intergenic 55.0%
ACGGATACGGACATGGACGA+GGG - chr1_4:71723519-71723538 None:intergenic 55.0%
!!! GCGAGTTGGGTTTTGAAGGG+AGG + chr1_4:71723663-71723682 Msa0182940:intron 55.0%
GGGAGGAATTTCCAGGAAGC+AGG + chr1_4:71724422-71724441 Msa0182940:CDS 55.0%
! CGAGTTGACCGGTGAGAACG+TGG - chr1_4:71722575-71722594 None:intergenic 60.0%
ACCGGGACACCCCTAATACG+AGG - chr1_4:71723390-71723409 None:intergenic 60.0%
CACGACAAGTGTCCGACACC+GGG - chr1_4:71723407-71723426 None:intergenic 60.0%
GCACGACAAGTGTCCGACAC+CGG - chr1_4:71723408-71723427 None:intergenic 60.0%
CACGGATACGGACATGGACG+AGG - chr1_4:71723520-71723539 None:intergenic 60.0%
GCACCTTCCTTCCTGCTTCC+TGG - chr1_4:71724436-71724455 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 71722322 71724872 71722322 ID=Msa0182940;Name=Msa0182940
chr1_4 mRNA 71722322 71724872 71722322 ID=Msa0182940-mRNA-1;Parent=Msa0182940;Name=Msa0182940-mRNA-1;_AED=0.38;_eAED=0.38;_QI=145|1|1|1|1|1|2|353|181
chr1_4 exon 71722322 71722805 71722322 ID=Msa0182940-mRNA-1:exon:24053;Parent=Msa0182940-mRNA-1
chr1_4 exon 71724313 71724872 71724313 ID=Msa0182940-mRNA-1:exon:24054;Parent=Msa0182940-mRNA-1
chr1_4 five_prime_UTR 71722322 71722466 71722322 ID=Msa0182940-mRNA-1:five_prime_utr;Parent=Msa0182940-mRNA-1
chr1_4 CDS 71722467 71722805 71722467 ID=Msa0182940-mRNA-1:cds;Parent=Msa0182940-mRNA-1
chr1_4 CDS 71724313 71724519 71724313 ID=Msa0182940-mRNA-1:cds;Parent=Msa0182940-mRNA-1
chr1_4 three_prime_UTR 71724520 71724872 71724520 ID=Msa0182940-mRNA-1:three_prime_utr;Parent=Msa0182940-mRNA-1
Gene Sequence

>Msa0182940

ATGGATACGGTGACCTCAACTTCAGCTTCGCTCACTCTAACTCTCCCAACCGTTCCGGTTCGTACAATTACCTCTTCAATCTCCGTATCCTCATCTCTTCCCTTACCACGTTCTCACCGGTCAACTCGGCAAAGACTCTACTCTCTAAAAAGAAGCTTCTCGAATTCTTCTTCTTATGCTGTTCCTAAGTTTACAGTGAGTTGCGGTATCACGGAAATCAATGAAAGCCAGTTCAAGGAAACCGTATTGAAATCTGAGCGTCCGGTTTTAGTTGAATTCGTTGCTACTTGGTGCGGTCCTTGCCGTTTGATCACTCCAGCTATGGAATCCATAGCTCAGGAATATGCAGACAGATTAACAGTTGTAAAGATTGATCATGATGCTAACCCGCAGCTAATTGAAGAGTATAAAGTTTATGGACTTCCAACCCTGATACTCTTCAAGAACGGGGAGGAATTTCCAGGAAGCAGGAAGGAAGGTGCAATTACAAAGGTGAAACTTAAACAACATTTGGATGCTTTATTGGAATCAATATCAGTTACATAG

Protein sequence

>Msa0182940

MDTVTSTSASLTLTLPTVPVRTITSSISVSSSLPLPRSHRSTRQRLYSLKRSFSNSSSYAVPKFTVSCGITEINESQFKETVLKSERPVLVEFVATWCGPCRLITPAMESIAQEYADRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGEEFPGSRKEGAITKVKLKQHLDALLESISVT*