Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0370710 | KEH34994.1 | 94.359 | 195 | 5 | 2 | 1 | 189 | 1 | 195 | 2.39e-126 | 371 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0370710 | A0A072UYX9 | 94.359 | 195 | 5 | 2 | 1 | 189 | 1 | 195 | 1.14e-126 | 371 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0370710 | Msa1147740 | 0.803366 | 3.607932e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0370710 | MtrunA17_Chr3g0116471 | 94.359 | 195 | 5 | 2 | 1 | 189 | 1 | 195 | 2.60e-128 | 374 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0370710 | AT5G63200.2 | 58.960 | 173 | 64 | 3 | 18 | 189 | 24 | 190 | 2.79e-55 | 185 |
| Msa0370710 | AT5G63200.1 | 58.960 | 173 | 64 | 3 | 18 | 189 | 24 | 190 | 3.28e-55 | 185 |
Find 45 sgRNAs with CRISPR-Local
Find 224 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGTAAATTGTTGAACAAAT+TGG | 0.186698 | 3_1:-68596039 | Msa0370710:CDS |
| GGTAAATTGTTGAACAAATT+GGG | 0.242481 | 3_1:-68596038 | Msa0370710:CDS |
| TTCGTTGCTATTGGTGTCTT+TGG | 0.243928 | 3_1:+68596067 | None:intergenic |
| TTTGAGGTTGGTTTAATCTT+TGG | 0.257741 | 3_1:+68595570 | None:intergenic |
| AACTCTTATCTTGACTGTTT+TGG | 0.278632 | 3_1:+68596096 | None:intergenic |
| TCTTCGTCGTCATCGGCTTC+AGG | 0.284486 | 3_1:+68597226 | None:intergenic |
| GAGGAAACAATTCGCTGTTT+TGG | 0.288498 | 3_1:-68597269 | Msa0370710:CDS |
| ACCTTCAGCTTCGTTGCTAT+TGG | 0.292512 | 3_1:+68596058 | None:intergenic |
| AGAATCCGTCTTGCTAGGTT+TGG | 0.381752 | 3_1:+68596004 | None:intergenic |
| CTAACTGACTCGAGTTGAAA+TGG | 0.406455 | 3_1:-68597332 | None:intergenic |
| GGCCAGAGGTTGAGATTGAT+AGG | 0.407562 | 3_1:-68595430 | Msa0370710:CDS |
| CTTCGTCGTCATCGGCTTCA+GGG | 0.410958 | 3_1:+68597227 | None:intergenic |
| AGTTGAAATGGCTGAGAAGT+TGG | 0.416552 | 3_1:-68597320 | Msa0370710:exon |
| AAGATTAAACCAACCTCAAA+AGG | 0.456393 | 3_1:-68595567 | Msa0370710:intron |
| GCCCTATCAATCTCAACCTC+TGG | 0.462898 | 3_1:+68595428 | None:intergenic |
| GGTTCAGAAGAGAGGTCAGC+AGG | 0.463431 | 3_1:-68597298 | Msa0370710:CDS |
| GTTGAAATGGCTGAGAAGTT+GGG | 0.466425 | 3_1:-68597319 | Msa0370710:exon |
| GATGGTGATCCACATGTTCA+AGG | 0.468474 | 3_1:-68595957 | Msa0370710:CDS |
| ATTGTCGTCTTCGTCGTCAT+CGG | 0.481606 | 3_1:+68597219 | None:intergenic |
| ATAGAAGAATCCGTCTTGCT+AGG | 0.514510 | 3_1:+68595999 | None:intergenic |
| GGCTATATTGGCTTATGAGA+AGG | 0.523725 | 3_1:-68595471 | Msa0370710:CDS |
| AGAGGTCAGCAGGGATGAAG+AGG | 0.525738 | 3_1:-68597288 | Msa0370710:CDS |
| GTAAATTGTTGAACAAATTG+GGG | 0.537086 | 3_1:-68596037 | Msa0370710:CDS |
| ATGGTGATCCACATGTTCAA+GGG | 0.553742 | 3_1:-68595956 | Msa0370710:CDS |
| TTCGTCGTCATCGGCTTCAG+GGG | 0.570497 | 3_1:+68597228 | None:intergenic |
| TTCAAGGGGCTCCTTCAGCA+AGG | 0.576341 | 3_1:-68595941 | Msa0370710:CDS |
| CCGTCTTGCTAGGTTTGGAA+CGG | 0.585221 | 3_1:+68596009 | None:intergenic |
| CACCACATACTGAAATCACC+AGG | 0.593600 | 3_1:-68597174 | Msa0370710:intron |
| GCCAGAGGTTGAGATTGATA+GGG | 0.602698 | 3_1:-68595429 | Msa0370710:CDS |
| TATTGACTGTGGAGCTGATG+CGG | 0.604464 | 3_1:-68595979 | Msa0370710:CDS |
| GAAGGAGCCCCTTGAACATG+TGG | 0.610791 | 3_1:+68595948 | None:intergenic |
| GTTCAGAAGAGAGGTCAGCA+GGG | 0.617646 | 3_1:-68597297 | Msa0370710:CDS |
| AGAAGTTGGGTTCAGAAGAG+AGG | 0.621301 | 3_1:-68597306 | Msa0370710:CDS |
| ACCAATAGCAACGAAGCTGA+AGG | 0.632759 | 3_1:-68596059 | Msa0370710:CDS |
| GACTGTGGAGCTGATGCGGA+TGG | 0.637090 | 3_1:-68595975 | Msa0370710:CDS |
| TGGTGATCCACATGTTCAAG+GGG | 0.640055 | 3_1:-68595955 | Msa0370710:CDS |
| ACGGATTCTTCTATTGACTG+TGG | 0.641658 | 3_1:-68595990 | Msa0370710:CDS |
| TCGTCGTCATCGGCTTCAGG+GGG | 0.644071 | 3_1:+68597229 | None:intergenic |
| AGAGATATTACTCAGGCCAG+AGG | 0.645910 | 3_1:-68595444 | Msa0370710:CDS |
| AGGCAGAAGAGATATTACTC+AGG | 0.648663 | 3_1:-68595451 | Msa0370710:CDS |
| CCGTTCCAAACCTAGCAAGA+CGG | 0.649704 | 3_1:-68596009 | Msa0370710:CDS |
| TACCTGGTGATTTCAGTATG+TGG | 0.650560 | 3_1:+68597172 | None:intergenic |
| AGGGATTGGTTCATGTTGCG+AGG | 0.658064 | 3_1:-68595640 | Msa0370710:CDS |
| TCAAGGGGCTCCTTCAGCAA+GGG | 0.663459 | 3_1:-68595940 | Msa0370710:CDS |
| CTGGTGATTTCAGTATGTGG+TGG | 0.680891 | 3_1:+68597175 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTTTTGAATTAACATAT+AGG | - | chr3_1:68596591-68596610 | Msa0370710:intron | 10.0% |
| !!! | TAATTTTTGAATTAACATAT+AGG | - | chr3_1:68596591-68596610 | Msa0370710:intron | 10.0% |
| !!! | ATTTCAAGTGATATATTTTT+CGG | - | chr3_1:68596319-68596338 | Msa0370710:intron | 15.0% |
| !!! | ATTTCAAGTGATATATTTTT+CGG | - | chr3_1:68596319-68596338 | Msa0370710:intron | 15.0% |
| !! | AATAAAAAGAAAAAGATACC+TGG | + | chr3_1:68595568-68595587 | None:intergenic | 20.0% |
| !! | TAATTAACTAACAGAATTAC+TGG | - | chr3_1:68595712-68595731 | Msa0370710:intron | 20.0% |
| !! | TTCGTAATAATTTGAGAAAA+TGG | - | chr3_1:68595785-68595804 | Msa0370710:intron | 20.0% |
| !! | TTTAAAAAAGATTTGCACAA+TGG | - | chr3_1:68595953-68595972 | Msa0370710:CDS | 20.0% |
| !! | TGTAATTTCATTGAAGATAT+TGG | - | chr3_1:68596266-68596285 | Msa0370710:intron | 20.0% |
| !!! | AATTCTGAATATCTTTTTGT+TGG | - | chr3_1:68596546-68596565 | Msa0370710:intron | 20.0% |
| !! | GATTAATAGAGTTTAAAAGT+GGG | + | chr3_1:68596883-68596902 | None:intergenic | 20.0% |
| !! | TGATTAATAGAGTTTAAAAG+TGG | + | chr3_1:68596884-68596903 | None:intergenic | 20.0% |
| !! | AATAAAAAGAAAAAGATACC+TGG | + | chr3_1:68595568-68595587 | None:intergenic | 20.0% |
| !! | TAATTAACTAACAGAATTAC+TGG | - | chr3_1:68595712-68595731 | Msa0370710:intron | 20.0% |
| !! | TTCGTAATAATTTGAGAAAA+TGG | - | chr3_1:68595785-68595804 | Msa0370710:intron | 20.0% |
| !! | TTTAAAAAAGATTTGCACAA+TGG | - | chr3_1:68595953-68595972 | Msa0370710:CDS | 20.0% |
| !! | TGTAATTTCATTGAAGATAT+TGG | - | chr3_1:68596266-68596285 | Msa0370710:intron | 20.0% |
| !!! | AATTCTGAATATCTTTTTGT+TGG | - | chr3_1:68596546-68596565 | Msa0370710:intron | 20.0% |
| !! | GATTAATAGAGTTTAAAAGT+GGG | + | chr3_1:68596883-68596902 | None:intergenic | 20.0% |
| !! | TGATTAATAGAGTTTAAAAG+TGG | + | chr3_1:68596884-68596903 | None:intergenic | 20.0% |
| ! | AGTTAATTATGAGTTACTTC+AGG | + | chr3_1:68595701-68595720 | None:intergenic | 25.0% |
| ! | CAAAAAAATCCAAAACAAAC+GGG | + | chr3_1:68595824-68595843 | None:intergenic | 25.0% |
| ! | CCAAAAAAATCCAAAACAAA+CGG | + | chr3_1:68595825-68595844 | None:intergenic | 25.0% |
| ! | ATTCGTGATTTATGCTATTA+CGG | + | chr3_1:68596024-68596043 | None:intergenic | 25.0% |
| ! | ATACTATAGCACATTTACAA+AGG | + | chr3_1:68596399-68596418 | None:intergenic | 25.0% |
| ! | AGGTAAATTGTTGAACAAAT+TGG | - | chr3_1:68596682-68596701 | Msa0370710:intron | 25.0% |
| ! | GGTAAATTGTTGAACAAATT+GGG | - | chr3_1:68596683-68596702 | Msa0370710:intron | 25.0% |
| ! | GTAAATTGTTGAACAAATTG+GGG | - | chr3_1:68596684-68596703 | Msa0370710:intron | 25.0% |
| ! | ACAAAACTAGGTATAATTGT+AGG | - | chr3_1:68597061-68597080 | Msa0370710:intron | 25.0% |
| ! | CAAAACTAGGTATAATTGTA+GGG | - | chr3_1:68597062-68597081 | Msa0370710:intron | 25.0% |
| !!! | ATTAGGTCATTAACTTTTTC+AGG | - | chr3_1:68597229-68597248 | Msa0370710:CDS | 25.0% |
| !!! | TTAACTTTTTCAGGCTATAT+TGG | - | chr3_1:68597238-68597257 | Msa0370710:CDS | 25.0% |
| ! | AGTTAATTATGAGTTACTTC+AGG | + | chr3_1:68595701-68595720 | None:intergenic | 25.0% |
| ! | CAAAAAAATCCAAAACAAAC+GGG | + | chr3_1:68595824-68595843 | None:intergenic | 25.0% |
| ! | CCAAAAAAATCCAAAACAAA+CGG | + | chr3_1:68595825-68595844 | None:intergenic | 25.0% |
| ! | ATTCGTGATTTATGCTATTA+CGG | + | chr3_1:68596024-68596043 | None:intergenic | 25.0% |
| ! | ATACTATAGCACATTTACAA+AGG | + | chr3_1:68596399-68596418 | None:intergenic | 25.0% |
| ! | AGGTAAATTGTTGAACAAAT+TGG | - | chr3_1:68596682-68596701 | Msa0370710:intron | 25.0% |
| ! | GGTAAATTGTTGAACAAATT+GGG | - | chr3_1:68596683-68596702 | Msa0370710:intron | 25.0% |
| ! | GTAAATTGTTGAACAAATTG+GGG | - | chr3_1:68596684-68596703 | Msa0370710:intron | 25.0% |
| ! | ACAAAACTAGGTATAATTGT+AGG | - | chr3_1:68597061-68597080 | Msa0370710:intron | 25.0% |
| ! | CAAAACTAGGTATAATTGTA+GGG | - | chr3_1:68597062-68597081 | Msa0370710:intron | 25.0% |
| !!! | ATTAGGTCATTAACTTTTTC+AGG | - | chr3_1:68597229-68597248 | Msa0370710:CDS | 25.0% |
| !!! | TTAACTTTTTCAGGCTATAT+TGG | - | chr3_1:68597238-68597257 | Msa0370710:CDS | 25.0% |
| CTCAGAAATATGAATGAACT+AGG | - | chr3_1:68595671-68595690 | Msa0370710:intron | 30.0% | |
| TGAGAAAATGGAAGTGATTA+AGG | - | chr3_1:68595797-68595816 | Msa0370710:intron | 30.0% | |
| !!! | CCGTTTGTTTTGGATTTTTT+TGG | - | chr3_1:68595822-68595841 | Msa0370710:intron | 30.0% |
| !!! | AAGGTTTTAAATAACGATCG+AGG | + | chr3_1:68596059-68596078 | None:intergenic | 30.0% |
| ! | TCGATCGTTATTTAAAACCT+TGG | - | chr3_1:68596058-68596077 | Msa0370710:CDS | 30.0% |
| AAACCTTGGTTATAGCATAA+CGG | - | chr3_1:68596072-68596091 | Msa0370710:CDS | 30.0% | |
| ! | GTTATAGCATAACGGAATTT+GGG | - | chr3_1:68596080-68596099 | Msa0370710:CDS | 30.0% |
| ATGTTGTCAAATATCAGCTA+TGG | - | chr3_1:68596142-68596161 | Msa0370710:intron | 30.0% | |
| AACCAAGTCAAACATTGTAA+TGG | - | chr3_1:68596296-68596315 | Msa0370710:intron | 30.0% | |
| ATCCATTACAATGTTTGACT+TGG | + | chr3_1:68596301-68596320 | None:intergenic | 30.0% | |
| GGAAAGTTATGAAAGAGAAA+CGG | - | chr3_1:68596340-68596359 | Msa0370710:intron | 30.0% | |
| ! | TTTTACAACTACAAGCTTGT+CGG | + | chr3_1:68596366-68596385 | None:intergenic | 30.0% |
| ! | AACTCTTATCTTGACTGTTT+TGG | + | chr3_1:68596628-68596647 | None:intergenic | 30.0% |
| TGAAGACTGTGAGTTTAATT+TGG | - | chr3_1:68596822-68596841 | Msa0370710:intron | 30.0% | |
| !!! | CTAACTGACTAACTAGTTTT+AGG | + | chr3_1:68596966-68596985 | None:intergenic | 30.0% |
| ! | AAATGAGCATGAGCATTTTT+GGG | + | chr3_1:68597113-68597132 | None:intergenic | 30.0% |
| ! | AAAATGAGCATGAGCATTTT+TGG | + | chr3_1:68597114-68597133 | None:intergenic | 30.0% |
| !! | TTTGAGGTTGGTTTAATCTT+TGG | + | chr3_1:68597154-68597173 | None:intergenic | 30.0% |
| AAGATTAAACCAACCTCAAA+AGG | - | chr3_1:68597154-68597173 | Msa0370710:intron | 30.0% | |
| TCTTCCAAATTTACCTGTTA+CGG | - | chr3_1:68597181-68597200 | Msa0370710:CDS | 30.0% | |
| CTCAGAAATATGAATGAACT+AGG | - | chr3_1:68595671-68595690 | Msa0370710:intron | 30.0% | |
| TGAGAAAATGGAAGTGATTA+AGG | - | chr3_1:68595797-68595816 | Msa0370710:intron | 30.0% | |
| !!! | CCGTTTGTTTTGGATTTTTT+TGG | - | chr3_1:68595822-68595841 | Msa0370710:intron | 30.0% |
| !!! | AAGGTTTTAAATAACGATCG+AGG | + | chr3_1:68596059-68596078 | None:intergenic | 30.0% |
| ! | TCGATCGTTATTTAAAACCT+TGG | - | chr3_1:68596058-68596077 | Msa0370710:CDS | 30.0% |
| AAACCTTGGTTATAGCATAA+CGG | - | chr3_1:68596072-68596091 | Msa0370710:CDS | 30.0% | |
| ! | GTTATAGCATAACGGAATTT+GGG | - | chr3_1:68596080-68596099 | Msa0370710:CDS | 30.0% |
| ATGTTGTCAAATATCAGCTA+TGG | - | chr3_1:68596142-68596161 | Msa0370710:intron | 30.0% | |
| AACCAAGTCAAACATTGTAA+TGG | - | chr3_1:68596296-68596315 | Msa0370710:intron | 30.0% | |
| ATCCATTACAATGTTTGACT+TGG | + | chr3_1:68596301-68596320 | None:intergenic | 30.0% | |
| GGAAAGTTATGAAAGAGAAA+CGG | - | chr3_1:68596340-68596359 | Msa0370710:intron | 30.0% | |
| ! | TTTTACAACTACAAGCTTGT+CGG | + | chr3_1:68596366-68596385 | None:intergenic | 30.0% |
| ! | AACTCTTATCTTGACTGTTT+TGG | + | chr3_1:68596628-68596647 | None:intergenic | 30.0% |
| TGAAGACTGTGAGTTTAATT+TGG | - | chr3_1:68596822-68596841 | Msa0370710:intron | 30.0% | |
| !!! | CTAACTGACTAACTAGTTTT+AGG | + | chr3_1:68596966-68596985 | None:intergenic | 30.0% |
| ! | AAATGAGCATGAGCATTTTT+GGG | + | chr3_1:68597113-68597132 | None:intergenic | 30.0% |
| ! | AAAATGAGCATGAGCATTTT+TGG | + | chr3_1:68597114-68597133 | None:intergenic | 30.0% |
| !! | TTTGAGGTTGGTTTAATCTT+TGG | + | chr3_1:68597154-68597173 | None:intergenic | 30.0% |
| AAGATTAAACCAACCTCAAA+AGG | - | chr3_1:68597154-68597173 | Msa0370710:intron | 30.0% | |
| TCTTCCAAATTTACCTGTTA+CGG | - | chr3_1:68597181-68597200 | Msa0370710:CDS | 30.0% | |
| TATTACGAAAGTCTACGTGT+CGG | + | chr3_1:68595774-68595793 | None:intergenic | 35.0% | |
| ATTCCGTTATGCTATAACCA+AGG | + | chr3_1:68596078-68596097 | None:intergenic | 35.0% | |
| ! | GGTTATAGCATAACGGAATT+TGG | - | chr3_1:68596079-68596098 | Msa0370710:CDS | 35.0% |
| TTACACAGTGTTGTCAATTG+TGG | + | chr3_1:68596224-68596243 | None:intergenic | 35.0% | |
| AAAACCTGCTGTCAATTGAA+TGG | + | chr3_1:68596482-68596501 | None:intergenic | 35.0% | |
| AAGATAGCTATCTGACTATC+TGG | + | chr3_1:68596931-68596950 | None:intergenic | 35.0% | |
| !!! | CTGACTAACTAGTTTTAGGT+AGG | + | chr3_1:68596962-68596981 | None:intergenic | 35.0% |
| !!! | ATTGCCAGTGTTGTTGTTTT+TGG | - | chr3_1:68597028-68597047 | Msa0370710:intron | 35.0% |
| CTAACCAAAAACAACAACAC+TGG | + | chr3_1:68597035-68597054 | None:intergenic | 35.0% | |
| ! | GGTTAGTCAATGACAAAACT+AGG | - | chr3_1:68597049-68597068 | Msa0370710:intron | 35.0% |
| CTAGGTATAATTGTAGGGAT+TGG | - | chr3_1:68597067-68597086 | Msa0370710:intron | 35.0% | |
| ! | GCTCATGCTCATTTTATACT+TGG | - | chr3_1:68597119-68597138 | Msa0370710:intron | 35.0% |
| ! | TTTGGAAGAACTACCTTTTG+AGG | + | chr3_1:68597170-68597189 | None:intergenic | 35.0% |
| CTACATACAGGTTACTCATT+AGG | - | chr3_1:68597212-68597231 | Msa0370710:CDS | 35.0% | |
| GGTGAATCTGAACTAAAGAA+AGG | + | chr3_1:68597325-68597344 | None:intergenic | 35.0% | |
| TATTACGAAAGTCTACGTGT+CGG | + | chr3_1:68595774-68595793 | None:intergenic | 35.0% | |
| ATTCCGTTATGCTATAACCA+AGG | + | chr3_1:68596078-68596097 | None:intergenic | 35.0% | |
| ! | GGTTATAGCATAACGGAATT+TGG | - | chr3_1:68596079-68596098 | Msa0370710:CDS | 35.0% |
| TTACACAGTGTTGTCAATTG+TGG | + | chr3_1:68596224-68596243 | None:intergenic | 35.0% | |
| AAAACCTGCTGTCAATTGAA+TGG | + | chr3_1:68596482-68596501 | None:intergenic | 35.0% | |
| AAGATAGCTATCTGACTATC+TGG | + | chr3_1:68596931-68596950 | None:intergenic | 35.0% | |
| !!! | CTGACTAACTAGTTTTAGGT+AGG | + | chr3_1:68596962-68596981 | None:intergenic | 35.0% |
| !!! | ATTGCCAGTGTTGTTGTTTT+TGG | - | chr3_1:68597028-68597047 | Msa0370710:intron | 35.0% |
| CTAACCAAAAACAACAACAC+TGG | + | chr3_1:68597035-68597054 | None:intergenic | 35.0% | |
| ! | GGTTAGTCAATGACAAAACT+AGG | - | chr3_1:68597049-68597068 | Msa0370710:intron | 35.0% |
| CTAGGTATAATTGTAGGGAT+TGG | - | chr3_1:68597067-68597086 | Msa0370710:intron | 35.0% | |
| ! | GCTCATGCTCATTTTATACT+TGG | - | chr3_1:68597119-68597138 | Msa0370710:intron | 35.0% |
| ! | TTTGGAAGAACTACCTTTTG+AGG | + | chr3_1:68597170-68597189 | None:intergenic | 35.0% |
| CTACATACAGGTTACTCATT+AGG | - | chr3_1:68597212-68597231 | Msa0370710:CDS | 35.0% | |
| GGTGAATCTGAACTAAAGAA+AGG | + | chr3_1:68597325-68597344 | None:intergenic | 35.0% | |
| AGTTGAAATGGCTGAGAAGT+TGG | - | chr3_1:68595401-68595420 | Msa0370710:CDS | 40.0% | |
| GTTGAAATGGCTGAGAAGTT+GGG | - | chr3_1:68595402-68595421 | Msa0370710:CDS | 40.0% | |
| ! | GAGGAAACAATTCGCTGTTT+TGG | - | chr3_1:68595452-68595471 | Msa0370710:CDS | 40.0% |
| TACCTGGTGATTTCAGTATG+TGG | + | chr3_1:68595552-68595571 | None:intergenic | 40.0% | |
| ! | GATTAAGGACCCGTTTGTTT+TGG | - | chr3_1:68595812-68595831 | Msa0370710:intron | 40.0% |
| GTGTTGTCAATTGTGGATAG+TGG | + | chr3_1:68596217-68596236 | None:intergenic | 40.0% | |
| AACACTGTGTAACGAGCATT+TGG | - | chr3_1:68596232-68596251 | Msa0370710:intron | 40.0% | |
| ACACTGTGTAACGAGCATTT+GGG | - | chr3_1:68596233-68596252 | Msa0370710:intron | 40.0% | |
| TTGTCCATTCAATTGACAGC+AGG | - | chr3_1:68596475-68596494 | Msa0370710:intron | 40.0% | |
| ! | TTCGTTGCTATTGGTGTCTT+TGG | + | chr3_1:68596657-68596676 | None:intergenic | 40.0% |
| ATAGAAGAATCCGTCTTGCT+AGG | + | chr3_1:68596725-68596744 | None:intergenic | 40.0% | |
| ! | ACGGATTCTTCTATTGACTG+TGG | - | chr3_1:68596731-68596750 | Msa0370710:intron | 40.0% |
| ATGGTGATCCACATGTTCAA+GGG | - | chr3_1:68596765-68596784 | Msa0370710:intron | 40.0% | |
| !! | ACTTTTTCTTCCCTTGCTGA+AGG | + | chr3_1:68596794-68596813 | None:intergenic | 40.0% |
| CAATCAGTCTAATGTGCCTA+AGG | - | chr3_1:68596902-68596921 | Msa0370710:intron | 40.0% | |
| ! | TCTGACTATCTGGAATCCTT+AGG | + | chr3_1:68596921-68596940 | None:intergenic | 40.0% |
| !!! | GAAGAACTACCTTTTGAGGT+TGG | + | chr3_1:68597166-68597185 | None:intergenic | 40.0% |
| GGAACCGTAACAGGTAAATT+TGG | + | chr3_1:68597188-68597207 | None:intergenic | 40.0% | |
| GAGTAACCTGTATGTAGACT+AGG | + | chr3_1:68597209-68597228 | None:intergenic | 40.0% | |
| !! | GGCTATATTGGCTTATGAGA+AGG | - | chr3_1:68597250-68597269 | Msa0370710:CDS | 40.0% |
| AGGCAGAAGAGATATTACTC+AGG | - | chr3_1:68597270-68597289 | Msa0370710:CDS | 40.0% | |
| AGTTGAAATGGCTGAGAAGT+TGG | - | chr3_1:68595401-68595420 | Msa0370710:CDS | 40.0% | |
| GTTGAAATGGCTGAGAAGTT+GGG | - | chr3_1:68595402-68595421 | Msa0370710:CDS | 40.0% | |
| ! | GAGGAAACAATTCGCTGTTT+TGG | - | chr3_1:68595452-68595471 | Msa0370710:CDS | 40.0% |
| TACCTGGTGATTTCAGTATG+TGG | + | chr3_1:68595552-68595571 | None:intergenic | 40.0% | |
| ! | GATTAAGGACCCGTTTGTTT+TGG | - | chr3_1:68595812-68595831 | Msa0370710:intron | 40.0% |
| GTGTTGTCAATTGTGGATAG+TGG | + | chr3_1:68596217-68596236 | None:intergenic | 40.0% | |
| AACACTGTGTAACGAGCATT+TGG | - | chr3_1:68596232-68596251 | Msa0370710:intron | 40.0% | |
| ACACTGTGTAACGAGCATTT+GGG | - | chr3_1:68596233-68596252 | Msa0370710:intron | 40.0% | |
| TTGTCCATTCAATTGACAGC+AGG | - | chr3_1:68596475-68596494 | Msa0370710:intron | 40.0% | |
| ! | TTCGTTGCTATTGGTGTCTT+TGG | + | chr3_1:68596657-68596676 | None:intergenic | 40.0% |
| ATAGAAGAATCCGTCTTGCT+AGG | + | chr3_1:68596725-68596744 | None:intergenic | 40.0% | |
| ! | ACGGATTCTTCTATTGACTG+TGG | - | chr3_1:68596731-68596750 | Msa0370710:intron | 40.0% |
| ATGGTGATCCACATGTTCAA+GGG | - | chr3_1:68596765-68596784 | Msa0370710:intron | 40.0% | |
| !! | ACTTTTTCTTCCCTTGCTGA+AGG | + | chr3_1:68596794-68596813 | None:intergenic | 40.0% |
| CAATCAGTCTAATGTGCCTA+AGG | - | chr3_1:68596902-68596921 | Msa0370710:intron | 40.0% | |
| ! | TCTGACTATCTGGAATCCTT+AGG | + | chr3_1:68596921-68596940 | None:intergenic | 40.0% |
| !!! | GAAGAACTACCTTTTGAGGT+TGG | + | chr3_1:68597166-68597185 | None:intergenic | 40.0% |
| GGAACCGTAACAGGTAAATT+TGG | + | chr3_1:68597188-68597207 | None:intergenic | 40.0% | |
| GAGTAACCTGTATGTAGACT+AGG | + | chr3_1:68597209-68597228 | None:intergenic | 40.0% | |
| !! | GGCTATATTGGCTTATGAGA+AGG | - | chr3_1:68597250-68597269 | Msa0370710:CDS | 40.0% |
| AGGCAGAAGAGATATTACTC+AGG | - | chr3_1:68597270-68597289 | Msa0370710:CDS | 40.0% | |
| AGAAGTTGGGTTCAGAAGAG+AGG | - | chr3_1:68595415-68595434 | Msa0370710:CDS | 45.0% | |
| ATTGTCGTCTTCGTCGTCAT+CGG | + | chr3_1:68595505-68595524 | None:intergenic | 45.0% | |
| CTGGTGATTTCAGTATGTGG+TGG | + | chr3_1:68595549-68595568 | None:intergenic | 45.0% | |
| CACCACATACTGAAATCACC+AGG | - | chr3_1:68595547-68595566 | Msa0370710:intron | 45.0% | |
| TAACGATCGAGGTCGCATTA+AGG | + | chr3_1:68596048-68596067 | None:intergenic | 45.0% | |
| !! | CAATGTTTGACTTGGTTGCG+AGG | + | chr3_1:68596293-68596312 | None:intergenic | 45.0% |
| ACCAATAGCAACGAAGCTGA+AGG | - | chr3_1:68596662-68596681 | Msa0370710:intron | 45.0% | |
| ACCTTCAGCTTCGTTGCTAT+TGG | + | chr3_1:68596666-68596685 | None:intergenic | 45.0% | |
| AGAATCCGTCTTGCTAGGTT+TGG | + | chr3_1:68596720-68596739 | None:intergenic | 45.0% | |
| ! | TATTGACTGTGGAGCTGATG+CGG | - | chr3_1:68596742-68596761 | Msa0370710:intron | 45.0% |
| GATGGTGATCCACATGTTCA+AGG | - | chr3_1:68596764-68596783 | Msa0370710:intron | 45.0% | |
| TGGTGATCCACATGTTCAAG+GGG | - | chr3_1:68596766-68596785 | Msa0370710:intron | 45.0% | |
| TGTAGACTAGGAACCGTAAC+AGG | + | chr3_1:68597197-68597216 | None:intergenic | 45.0% | |
| ACGGTTCCTAGTCTACATAC+AGG | - | chr3_1:68597200-68597219 | Msa0370710:CDS | 45.0% | |
| AGAGATATTACTCAGGCCAG+AGG | - | chr3_1:68597277-68597296 | Msa0370710:CDS | 45.0% | |
| GCCAGAGGTTGAGATTGATA+GGG | - | chr3_1:68597292-68597311 | Msa0370710:CDS | 45.0% | |
| AGAAGTTGGGTTCAGAAGAG+AGG | - | chr3_1:68595415-68595434 | Msa0370710:CDS | 45.0% | |
| ATTGTCGTCTTCGTCGTCAT+CGG | + | chr3_1:68595505-68595524 | None:intergenic | 45.0% | |
| CTGGTGATTTCAGTATGTGG+TGG | + | chr3_1:68595549-68595568 | None:intergenic | 45.0% | |
| CACCACATACTGAAATCACC+AGG | - | chr3_1:68595547-68595566 | Msa0370710:intron | 45.0% | |
| TAACGATCGAGGTCGCATTA+AGG | + | chr3_1:68596048-68596067 | None:intergenic | 45.0% | |
| !! | CAATGTTTGACTTGGTTGCG+AGG | + | chr3_1:68596293-68596312 | None:intergenic | 45.0% |
| ACCAATAGCAACGAAGCTGA+AGG | - | chr3_1:68596662-68596681 | Msa0370710:intron | 45.0% | |
| ACCTTCAGCTTCGTTGCTAT+TGG | + | chr3_1:68596666-68596685 | None:intergenic | 45.0% | |
| AGAATCCGTCTTGCTAGGTT+TGG | + | chr3_1:68596720-68596739 | None:intergenic | 45.0% | |
| ! | TATTGACTGTGGAGCTGATG+CGG | - | chr3_1:68596742-68596761 | Msa0370710:intron | 45.0% |
| GATGGTGATCCACATGTTCA+AGG | - | chr3_1:68596764-68596783 | Msa0370710:intron | 45.0% | |
| TGGTGATCCACATGTTCAAG+GGG | - | chr3_1:68596766-68596785 | Msa0370710:intron | 45.0% | |
| TGTAGACTAGGAACCGTAAC+AGG | + | chr3_1:68597197-68597216 | None:intergenic | 45.0% | |
| ACGGTTCCTAGTCTACATAC+AGG | - | chr3_1:68597200-68597219 | Msa0370710:CDS | 45.0% | |
| AGAGATATTACTCAGGCCAG+AGG | - | chr3_1:68597277-68597296 | Msa0370710:CDS | 45.0% | |
| GCCAGAGGTTGAGATTGATA+GGG | - | chr3_1:68597292-68597311 | Msa0370710:CDS | 45.0% | |
| GTTCAGAAGAGAGGTCAGCA+GGG | - | chr3_1:68595424-68595443 | Msa0370710:CDS | 50.0% | |
| ! | CTACGTGTCGGTATCGAGTT+CGG | + | chr3_1:68595762-68595781 | None:intergenic | 50.0% |
| CCGTCTTGCTAGGTTTGGAA+CGG | + | chr3_1:68596715-68596734 | None:intergenic | 50.0% | |
| CCGTTCCAAACCTAGCAAGA+CGG | - | chr3_1:68596712-68596731 | Msa0370710:intron | 50.0% | |
| !! | AGGGATTGGTTCATGTTGCG+AGG | - | chr3_1:68597081-68597100 | Msa0370710:intron | 50.0% |
| GGCCAGAGGTTGAGATTGAT+AGG | - | chr3_1:68597291-68597310 | Msa0370710:CDS | 50.0% | |
| GCCCTATCAATCTCAACCTC+TGG | + | chr3_1:68597296-68597315 | None:intergenic | 50.0% | |
| GTTCAGAAGAGAGGTCAGCA+GGG | - | chr3_1:68595424-68595443 | Msa0370710:CDS | 50.0% | |
| ! | CTACGTGTCGGTATCGAGTT+CGG | + | chr3_1:68595762-68595781 | None:intergenic | 50.0% |
| CCGTCTTGCTAGGTTTGGAA+CGG | + | chr3_1:68596715-68596734 | None:intergenic | 50.0% | |
| CCGTTCCAAACCTAGCAAGA+CGG | - | chr3_1:68596712-68596731 | Msa0370710:intron | 50.0% | |
| !! | AGGGATTGGTTCATGTTGCG+AGG | - | chr3_1:68597081-68597100 | Msa0370710:intron | 50.0% |
| GGCCAGAGGTTGAGATTGAT+AGG | - | chr3_1:68597291-68597310 | Msa0370710:CDS | 50.0% | |
| GCCCTATCAATCTCAACCTC+TGG | + | chr3_1:68597296-68597315 | None:intergenic | 50.0% | |
| GGTTCAGAAGAGAGGTCAGC+AGG | - | chr3_1:68595423-68595442 | Msa0370710:CDS | 55.0% | |
| AGAGGTCAGCAGGGATGAAG+AGG | - | chr3_1:68595433-68595452 | Msa0370710:CDS | 55.0% | |
| CTTCAGGGGGATCGATGTTG+AGG | + | chr3_1:68595482-68595501 | None:intergenic | 55.0% | |
| !! | TTCGTCGTCATCGGCTTCAG+GGG | + | chr3_1:68595496-68595515 | None:intergenic | 55.0% |
| !! | CTTCGTCGTCATCGGCTTCA+GGG | + | chr3_1:68595497-68595516 | None:intergenic | 55.0% |
| !! | TCTTCGTCGTCATCGGCTTC+AGG | + | chr3_1:68595498-68595517 | None:intergenic | 55.0% |
| GAAGGAGCCCCTTGAACATG+TGG | + | chr3_1:68596776-68596795 | None:intergenic | 55.0% | |
| TTCAAGGGGCTCCTTCAGCA+AGG | - | chr3_1:68596780-68596799 | Msa0370710:intron | 55.0% | |
| TCAAGGGGCTCCTTCAGCAA+GGG | - | chr3_1:68596781-68596800 | Msa0370710:intron | 55.0% | |
| GGTTCAGAAGAGAGGTCAGC+AGG | - | chr3_1:68595423-68595442 | Msa0370710:CDS | 55.0% | |
| AGAGGTCAGCAGGGATGAAG+AGG | - | chr3_1:68595433-68595452 | Msa0370710:CDS | 55.0% | |
| CTTCAGGGGGATCGATGTTG+AGG | + | chr3_1:68595482-68595501 | None:intergenic | 55.0% | |
| !! | TTCGTCGTCATCGGCTTCAG+GGG | + | chr3_1:68595496-68595515 | None:intergenic | 55.0% |
| !! | CTTCGTCGTCATCGGCTTCA+GGG | + | chr3_1:68595497-68595516 | None:intergenic | 55.0% |
| !! | TCTTCGTCGTCATCGGCTTC+AGG | + | chr3_1:68595498-68595517 | None:intergenic | 55.0% |
| GAAGGAGCCCCTTGAACATG+TGG | + | chr3_1:68596776-68596795 | None:intergenic | 55.0% | |
| TTCAAGGGGCTCCTTCAGCA+AGG | - | chr3_1:68596780-68596799 | Msa0370710:intron | 55.0% | |
| TCAAGGGGCTCCTTCAGCAA+GGG | - | chr3_1:68596781-68596800 | Msa0370710:intron | 55.0% | |
| !! | TCGTCGTCATCGGCTTCAGG+GGG | + | chr3_1:68595495-68595514 | None:intergenic | 60.0% |
| GACTGTGGAGCTGATGCGGA+TGG | - | chr3_1:68596746-68596765 | Msa0370710:intron | 60.0% | |
| !! | TCGTCGTCATCGGCTTCAGG+GGG | + | chr3_1:68595495-68595514 | None:intergenic | 60.0% |
| GACTGTGGAGCTGATGCGGA+TGG | - | chr3_1:68596746-68596765 | Msa0370710:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 68595397 | 68597346 | 68595397 | ID=Msa0370710;Name=Msa0370710 |
| chr3_1 | mRNA | 68595397 | 68597346 | 68595397 | ID=Msa0370710-mRNA-1;Parent=Msa0370710;Name=Msa0370710-mRNA-1;_AED=0.00;_eAED=0.00;_QI=11|1|1|1|1|1|4|0|189 |
| chr3_1 | exon | 68595397 | 68595492 | 68595397 | ID=Msa0370710-mRNA-1:exon:14454;Parent=Msa0370710-mRNA-1 |
| chr3_1 | exon | 68595568 | 68595660 | 68595568 | ID=Msa0370710-mRNA-1:exon:14453;Parent=Msa0370710-mRNA-1 |
| chr3_1 | exon | 68595914 | 68596130 | 68595914 | ID=Msa0370710-mRNA-1:exon:14452;Parent=Msa0370710-mRNA-1 |
| chr3_1 | exon | 68597175 | 68597346 | 68597175 | ID=Msa0370710-mRNA-1:exon:14451;Parent=Msa0370710-mRNA-1 |
| chr3_1 | five_prime_UTR | 68597336 | 68597346 | 68597336 | ID=Msa0370710-mRNA-1:five_prime_utr;Parent=Msa0370710-mRNA-1 |
| chr3_1 | CDS | 68597175 | 68597335 | 68597175 | ID=Msa0370710-mRNA-1:cds;Parent=Msa0370710-mRNA-1 |
| chr3_1 | CDS | 68595914 | 68596130 | 68595914 | ID=Msa0370710-mRNA-1:cds;Parent=Msa0370710-mRNA-1 |
| chr3_1 | CDS | 68595568 | 68595660 | 68595568 | ID=Msa0370710-mRNA-1:cds;Parent=Msa0370710-mRNA-1 |
| chr3_1 | CDS | 68595397 | 68595492 | 68595397 | ID=Msa0370710-mRNA-1:cds;Parent=Msa0370710-mRNA-1 |
| Gene Sequence |
| Protein sequence |
