AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1147740


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1147740 MtrunA17_Chr2g0284681 93.914 608 32 3 1 608 1 603 0.0 1168
Msa1147740 MtrunA17_Chr4g0073741 68.182 616 171 6 1 602 1 605 0.0 855
Msa1147740 MtrunA17_Chr4g0031301 66.995 609 176 6 8 602 9 606 0.0 819
Msa1147740 MtrunA17_Chr4g0031321 66.667 609 178 6 8 602 9 606 0.0 814
Msa1147740 MtrunA17_Chr7g0223181 66.230 610 181 6 8 603 9 607 0.0 812
Msa1147740 MtrunA17_Chr7g0262821 66.174 609 181 6 8 602 9 606 0.0 811
Msa1147740 MtrunA17_Chr7g0223291 66.338 609 180 6 8 602 9 606 0.0 808
Msa1147740 MtrunA17_Chr6g0462681 54.530 607 242 7 8 596 9 599 0.0 658
Msa1147740 MtrunA17_Chr7g0223741 59.331 568 216 6 5 570 6 560 0.0 658
Msa1147740 MtrunA17_Chr8g0388671 56.146 602 233 8 2 587 32 618 0.0 657
Msa1147740 MtrunA17_Chr8g0388761 55.408 601 237 8 3 587 33 618 0.0 654
Msa1147740 MtrunA17_Chr7g0223751 57.699 565 223 8 8 570 9 559 0.0 650
Msa1147740 MtrunA17_Chr6g0462601 55.390 603 243 5 8 596 9 599 0.0 649
Msa1147740 MtrunA17_Chr7g0223711 57.522 565 225 6 5 567 6 557 0.0 648
Msa1147740 MtrunA17_Chr2g0298851 55.412 619 246 11 7 608 8 613 0.0 643
Msa1147740 MtrunA17_Chr5g0427901 53.822 628 250 11 8 608 9 623 0.0 642
Msa1147740 MtrunA17_Chr7g0221661 55.229 612 245 9 8 603 9 607 0.0 638
Msa1147740 MtrunA17_Chr7g0233311 58.127 566 223 7 8 571 9 562 0.0 636
Msa1147740 MtrunA17_Chr8g0350731 57.876 565 222 7 8 570 37 587 0.0 635
Msa1147740 MtrunA17_Chr7g0223731 56.866 568 229 7 5 570 6 559 0.0 632
Msa1147740 MtrunA17_Chr2g0293581 53.160 617 260 9 7 606 9 613 0.0 632
Msa1147740 MtrunA17_Chr7g0223781 57.118 569 227 8 8 574 9 562 0.0 629
Msa1147740 MtrunA17_Chr6g0462711 53.377 607 259 6 5 595 7 605 0.0 625
Msa1147740 MtrunA17_Chr7g0223721 53.560 618 257 10 8 608 9 613 0.0 625
Msa1147740 MtrunA17_Chr6g0462771 52.640 606 264 5 5 595 6 603 0.0 624
Msa1147740 MtrunA17_Chr7g0223801 52.614 612 259 9 8 603 9 605 0.0 623
Msa1147740 MtrunA17_Chr7g0223031 54.991 571 235 7 5 570 6 559 0.0 619
Msa1147740 MtrunA17_Chr7g0223701 54.058 616 254 9 8 603 9 615 0.0 619
Msa1147740 MtrunA17_Chr7g0248131 57.019 577 222 11 8 579 9 564 0.0 617
Msa1147740 MtrunA17_Chr7g0225671 53.834 626 256 12 1 608 9 619 0.0 615
Msa1147740 MtrunA17_Chr6g0462641 52.864 611 264 6 1 595 1 603 0.0 615
Msa1147740 MtrunA17_Chr7g0223621 55.221 565 237 7 8 570 9 559 0.0 615
Msa1147740 MtrunA17_Chr2g0287631 53.074 618 261 9 8 608 9 614 0.0 612
Msa1147740 MtrunA17_Chr4g0040931 52.427 618 264 10 8 608 9 613 0.0 610
Msa1147740 MtrunA17_Chr7g0248151 57.726 563 217 8 8 565 9 555 0.0 610
Msa1147740 MtrunA17_Chr7g0223851 53.055 622 260 10 5 608 15 622 0.0 610
Msa1147740 MtrunA17_Chr2g0298861 52.146 629 259 12 9 608 10 625 0.0 605
Msa1147740 MtrunA17_Chr7g0223631 54.513 565 227 9 8 570 9 545 0.0 595
Msa1147740 MtrunA17_Chr7g0233301 55.458 568 208 8 8 573 9 533 0.0 592
Msa1147740 MtrunA17_Chr7g0217971 51.490 604 239 9 8 595 9 574 0.0 583
Msa1147740 MtrunA17_Chr2g0296391 55.514 535 224 6 4 536 5 527 0.0 579
Msa1147740 MtrunA17_Chr7g0223821 51.278 626 268 10 5 608 6 616 0.0 575
Msa1147740 MtrunA17_Chr4g0012541 50.080 623 270 12 4 608 5 604 0.0 557
Msa1147740 MtrunA17_Chr8g0390821 47.964 663 250 14 8 603 11 645 0.0 553
Msa1147740 MtrunA17_Chr7g0223831 52.632 570 225 10 5 571 6 533 0.0 548
Msa1147740 MtrunA17_Chr7g0215261 52.641 568 218 9 7 571 8 527 0.0 547
Msa1147740 MtrunA17_Chr6g0462611 52.778 540 227 7 71 596 22 547 0.0 546
Msa1147740 MtrunA17_Chr7g0223541 55.200 500 211 5 71 570 31 517 0.0 537
Msa1147740 MtrunA17_Chr2g0331381 51.099 546 190 8 9 552 7 477 0.0 536
Msa1147740 MtrunA17_Chr7g0228281 47.658 619 249 8 7 608 69 629 0.0 528
Msa1147740 MtrunA17_Chr7g0223681 54.451 483 206 6 88 570 2 470 1.39e-176 511
Msa1147740 MtrunA17_Chr2g0293601 52.490 522 200 7 8 527 9 484 9.23e-175 504
Msa1147740 MtrunA17_Chr2g0299921 65.810 389 123 4 8 396 1029 1407 5.55e-167 520
Msa1147740 MtrunA17_Chr2g0299921 65.206 388 124 6 8 394 1413 1790 1.07e-153 484
Msa1147740 MtrunA17_Chr2g0299821 61.596 401 143 5 8 406 9 400 7.87e-166 482
Msa1147740 MtrunA17_Chr2g0299821 53.061 98 36 2 459 549 390 484 8.13e-20 92.8
Msa1147740 MtrunA17_Chr2g0279901 46.477 596 274 16 9 589 57 622 2.71e-163 482
Msa1147740 MtrunA17_Chr2g0299851 63.824 387 130 5 8 394 1038 1414 1.95e-162 501
Msa1147740 MtrunA17_Chr2g0293561 61.765 374 133 4 8 379 9 374 6.56e-162 468
Msa1147740 MtrunA17_Chr4g0049501 44.884 606 294 14 6 597 51 630 1.06e-158 470
Msa1147740 MtrunA17_Chr2g0299791 63.566 387 131 5 8 394 1042 1418 1.24e-156 485
Msa1147740 MtrunA17_Chr6g0462861 43.062 627 291 16 8 608 9 595 9.83e-151 449
Msa1147740 MtrunA17_Chr2g0299881 59.753 405 149 6 9 409 1039 1433 3.30e-149 467
Msa1147740 MtrunA17_Chr2g0299881 60.606 66 22 1 184 249 1414 1475 4.98e-15 79.0
Msa1147740 MtrunA17_Chr2g0277021 45.034 584 287 14 7 581 70 628 1.73e-146 440
Msa1147740 MtrunA17_Chr1g0166551 42.020 614 213 11 8 603 5 493 8.08e-144 426
Msa1147740 MtrunA17_Chr2g0293271 47.865 445 151 6 20 462 43 408 2.51e-131 391
Msa1147740 MtrunA17_Chr1g0151991 61.034 290 107 3 5 292 6 291 1.51e-123 366
Msa1147740 MtrunA17_Chr7g0245521 65.428 269 87 3 8 274 9 273 1.28e-118 353
Msa1147740 MtrunA17_Chr6g0462631 48.529 340 124 5 83 422 9 297 1.94e-95 294
Msa1147740 MtrunA17_Chr6g0462751 44.134 358 133 6 64 419 12 304 1.06e-90 283
Msa1147740 MtrunA17_Chr7g0223671 60.417 192 74 1 71 262 8 197 3.11e-78 246
Msa1147740 MtrunA17_Chr7g0223761 38.281 384 170 5 240 608 3 334 2.12e-77 249
Msa1147740 MtrunA17_Chr4g0004331 34.081 446 270 6 9 441 4 438 2.77e-76 259
Msa1147740 MtrunA17_Chr1g0188601 61.658 193 70 2 91 283 3 191 4.85e-76 240
Msa1147740 MtrunA17_Chr5g0394391 31.961 510 317 12 8 504 29 521 7.54e-76 252
Msa1147740 MtrunA17_Chr2g0331901 31.733 479 300 8 9 473 4 469 3.38e-74 254
Msa1147740 MtrunA17_Chr7g0245531 44.872 312 149 6 306 603 2 304 6.21e-74 239
Msa1147740 MtrunA17_Chr3g0098761 27.760 616 374 13 9 569 4 603 1.66e-69 239
Msa1147740 MtrunA17_Chr5g0444001 29.377 514 333 9 9 508 4 501 3.24e-68 231
Msa1147740 MtrunA17_Chr1g0152001 42.345 307 151 7 317 608 2 297 7.37e-67 221
Msa1147740 MtrunA17_Chr6g0462791 58.889 180 69 3 105 284 1 175 1.11e-65 213
Msa1147740 MtrunA17_Chr7g0223771 65.161 155 52 1 91 245 2 154 3.60e-65 211
Msa1147740 MtrunA17_Chr1g0188611 47.600 250 118 5 323 570 1 239 1.85e-55 189
Msa1147740 MtrunA17_Chr7g0223861 66.165 133 43 1 75 207 4 134 3.44e-55 183
Msa1147740 MtrunA17_Chr4g0064621 30.912 537 339 13 8 526 140 662 1.15e-54 197
Msa1147740 MtrunA17_Chr4g0060241 29.102 512 325 13 8 506 20 506 8.45e-54 192
Msa1147740 MtrunA17_Chr3g0120101 27.599 558 345 16 6 521 24 564 1.17e-52 194
Msa1147740 MtrunA17_Chr4g0046881 61.074 149 51 3 128 276 10 151 3.65e-51 173
Msa1147740 MtrunA17_Chr5g0394231 40.693 231 82 5 71 300 5 181 1.67e-44 156
Msa1147740 MtrunA17_Chr6g0462691 53.425 146 64 2 323 468 1 142 1.78e-44 155
Msa1147740 MtrunA17_Chr5g0394221 36.727 275 154 8 300 569 69 328 2.85e-44 161
Msa1147740 MtrunA17_Chr6g0462701 50.588 170 56 3 102 271 27 168 5.96e-44 154
Msa1147740 MtrunA17_Chr5g0442171 32.174 345 192 12 169 497 1 319 4.94e-41 151
Msa1147740 MtrunA17_Chr2g0284661 67.708 96 31 0 360 455 48 143 3.77e-36 132
Msa1147740 MtrunA17_Chr2g0284661 85.455 55 8 0 224 278 5 59 1.41e-24 99.8
Msa1147740 MtrunA17_Chr6g0481391 53.226 124 53 2 35 158 13 131 1.89e-35 130
Msa1147740 MtrunA17_Chr4g0046871 54.128 109 45 2 333 441 2 105 8.31e-31 116
Msa1147740 MtrunA17_Chr7g0245541 36.410 195 106 3 423 603 1 191 1.29e-28 113
Msa1147740 MtrunA17_Chr6g0462621 67.606 71 22 1 1 70 1 71 3.76e-27 104
Msa1147740 MtrunA17_Chr7g0223691 70.769 65 17 1 8 70 9 73 1.72e-24 97.1
Msa1147740 MtrunA17_Chr6g0481381 62.162 74 28 0 175 248 1 74 2.56e-24 100
Msa1147740 MtrunA17_Chr1g0188591 61.765 68 24 1 5 70 6 73 4.90e-23 93.6
Msa1147740 MtrunA17_Chr7g0223791 51.220 82 32 2 53 134 18 91 2.13e-18 83.6
Msa1147740 MtrunA17_Chr7g0223791 37.975 79 49 0 492 570 90 168 3.22e-12 65.5
Msa1147740 MtrunA17_Chr7g0223881 49.351 77 38 1 289 365 9 84 3.54e-18 79.7
Msa1147740 MtrunA17_Chr6g0462801 56.061 66 28 1 323 387 1 66 9.86e-17 75.1
Msa1147740 MtrunA17_Chr5g0442161 31.818 154 96 4 8 156 28 177 4.07e-15 73.9
Msa1147740 MtrunA17_Chr4g0064651 36.842 95 57 1 403 497 29 120 8.81e-15 71.2
Msa1147740 MtrunA17_Chr2g0299891 65.909 44 15 0 317 360 2 45 4.23e-14 67.8
Msa1147740 MtrunA17_Chr2g0299941 60.000 55 22 0 405 459 23 77 1.15e-13 67.0
Msa1147740 MtrunA17_Chr7g0221651 40.698 86 49 1 214 299 1 84 2.81e-13 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1147740 AT1G16030.1 66.558 616 181 6 1 602 1 605 0.0 830
Msa1147740 AT3G12580.1 66.885 610 177 6 8 603 9 607 0.0 814
Msa1147740 AT5G02500.1 66.230 610 181 6 8 603 9 607 0.0 810
Msa1147740 AT3G09440.1 65.902 610 183 6 8 603 9 607 0.0 800
Msa1147740 AT3G09440.4 65.902 610 183 6 8 603 9 607 0.0 800
Msa1147740 AT3G09440.2 65.902 610 183 6 8 603 9 607 0.0 800
Msa1147740 AT3G09440.3 65.902 610 183 6 8 603 9 607 0.0 800
Msa1147740 AT5G02490.1 65.574 610 185 6 8 603 9 607 0.0 800
Msa1147740 AT1G56410.1 64.967 608 190 7 8 603 9 605 0.0 784
Msa1147740 AT5G42020.1 56.078 617 240 8 2 602 31 632 0.0 677
Msa1147740 AT5G42020.3 56.078 617 240 8 2 602 36 637 0.0 675
Msa1147740 AT5G28540.1 55.916 617 241 8 2 602 31 632 0.0 673
Msa1147740 AT1G09080.1 56.486 609 235 7 9 602 53 646 0.0 657
Msa1147740 AT1G09080.2 56.486 609 235 7 9 602 43 636 0.0 656
Msa1147740 AT5G42020.2 52.239 603 230 11 2 602 31 577 0.0 587
Msa1147740 AT5G02500.2 70.051 394 110 4 8 401 9 394 0.0 566
Msa1147740 AT5G02500.2 48.913 92 33 1 526 603 386 477 3.23e-16 82.4
Msa1147740 AT5G09590.1 46.102 590 275 15 9 583 60 621 3.67e-159 472
Msa1147740 AT4G37910.1 46.946 573 266 13 9 569 55 601 8.71e-152 453
Msa1147740 AT4G37910.2 46.946 573 266 13 9 569 55 601 8.71e-152 453
Msa1147740 AT4G24280.1 43.089 615 306 17 7 608 79 662 1.71e-145 438
Msa1147740 AT5G49910.1 42.671 614 310 14 7 608 79 662 1.84e-145 438
Msa1147740 AT1G79930.2 34.529 446 268 6 9 441 4 438 2.99e-79 266
Msa1147740 AT1G79930.1 34.529 446 268 6 9 441 4 438 4.77e-79 267
Msa1147740 AT1G79920.1 34.529 446 268 6 9 441 4 438 5.84e-79 265
Msa1147740 AT1G79920.3 34.529 446 268 6 9 441 4 438 9.69e-79 264
Msa1147740 AT1G79920.2 34.529 446 268 6 9 441 4 438 9.69e-79 264
Msa1147740 AT1G79920.4 34.529 446 268 6 9 441 4 438 9.69e-79 264
Msa1147740 AT1G11660.4 28.528 652 395 15 9 608 4 636 1.52e-78 264
Msa1147740 AT1G11660.3 28.528 652 395 15 9 608 4 636 1.52e-78 264
Msa1147740 AT1G11660.1 28.528 652 395 15 9 608 4 636 1.52e-78 264
Msa1147740 AT1G11660.2 28.201 617 372 15 44 608 2 599 2.37e-68 236
Msa1147740 AT2G32120.1 31.115 511 313 12 8 506 30 513 3.21e-68 232
Msa1147740 AT2G32120.2 31.115 511 313 12 8 506 30 513 3.21e-68 232
Msa1147740 AT4G16660.2 26.151 478 317 10 5 459 47 511 1.07e-46 177
Msa1147740 AT4G16660.1 26.151 478 317 10 5 459 23 487 1.32e-46 176

Find 120 sgRNAs with CRISPR-Local

Find 282 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAAATTGCTGAAACATATT+TGG 0.113940 7_4:-27176460 Msa1147740:CDS
CATGGTGTTGTCTAAGTTAA+AGG 0.173778 7_4:-27176481 Msa1147740:CDS
TCAAAACAAACATTGATATT+TGG 0.181030 7_4:+27175391 None:intergenic
TTCAATAGTTGTTGAATCTT+TGG 0.191487 7_4:+27175796 None:intergenic
ACTGCAGCTGCTATTGCTTA+TGG 0.208608 7_4:-27176309 Msa1147740:CDS
TGGTTTGGAACAACCTTAAA+AGG 0.212043 7_4:+27176576 None:intergenic
TTGATATTTGGAACCTTTCT+TGG 0.239641 7_4:+27175403 None:intergenic
TGTTGATGTTAATGGAATTT+TGG 0.249963 7_4:-27175368 Msa1147740:CDS
GTTTCAACACCAAGACTAAA+AGG 0.273894 7_4:+27175622 None:intergenic
TACTATGATCCCTACGAAAA+AGG 0.295550 7_4:-27175563 Msa1147740:CDS
CAATCACGGGTTTGTCTTTG+TGG 0.307374 7_4:+27176556 None:intergenic
CAGTGAGAATTCCAAAGCTT+TGG 0.318063 7_4:-27176067 Msa1147740:CDS
ATCATTCTTCTCATCTCTTC+AGG 0.329446 7_4:+27175271 None:intergenic
AATGTTCTTGTCTTTGATCT+TGG 0.331932 7_4:-27176252 Msa1147740:CDS
AGTGAGAATTCCAAAGCTTT+GGG 0.334628 7_4:-27176066 Msa1147740:CDS
ACACGGTTCCCTTGGTCGTT+TGG 0.354947 7_4:+27176759 None:intergenic
ACTTTGGGAGATACTCATTT+GGG 0.360641 7_4:-27176168 Msa1147740:CDS
TTCAAGGTTAAGGCCACTTT+GGG 0.364020 7_4:-27176183 Msa1147740:CDS
TTATGTCTTGTTGGACTGAT+TGG 0.374106 7_4:+27176607 None:intergenic
GAGGGATGCCGAGCAGTATA+AGG 0.374329 7_4:-27175248 Msa1147740:CDS
GAAATTGCTGAAACATATTT+GGG 0.374370 7_4:-27176459 Msa1147740:CDS
ACGGGTTTGTCTTTGTGGTT+TGG 0.375126 7_4:+27176561 None:intergenic
AGCTGCTATTGCTTATGGTT+TGG 0.376546 7_4:-27176304 Msa1147740:CDS
CACTTTGGGAGATACTCATT+TGG 0.379211 7_4:-27176169 Msa1147740:CDS
GTTCATGAGTTTGTTCTTGT+AGG 0.379423 7_4:-27175835 Msa1147740:CDS
AAAGATGCAGGGAAAATTGC+TGG 0.381725 7_4:-27176363 Msa1147740:CDS
ACTCATCAATTTCTGCCAAT+TGG 0.383486 7_4:+27175095 None:intergenic
TCCAACAAGACATAAGGTTT+TGG 0.384795 7_4:-27176599 Msa1147740:CDS
CGAAGGAATGTTCAAGGTTA+AGG 0.387070 7_4:-27176193 Msa1147740:CDS
ACCGACACTGAAAGATTAAT+AGG 0.390230 7_4:-27176714 Msa1147740:CDS
TCTTAACCTCCCCAAAGCTT+TGG 0.400779 7_4:+27176056 None:intergenic
AAAGATTCAACAACTATTGA+AGG 0.402328 7_4:-27175794 Msa1147740:CDS
CTTGTCTTTGATCTTGGTGG+TGG 0.402810 7_4:-27176246 Msa1147740:CDS
TTTGATGCCAAACGTTTGAT+TGG 0.402974 7_4:-27176645 Msa1147740:CDS
GCCAAAACCTTATGTCTTGT+TGG 0.404961 7_4:+27176598 None:intergenic
GTTCTTGTCTTTGATCTTGG+TGG 0.414303 7_4:-27176249 Msa1147740:CDS
AGAATTATGTTTATGAAATG+AGG 0.432257 7_4:-27175177 Msa1147740:CDS
CCATATGCTACAGCTTCATC+TGG 0.435300 7_4:+27175721 None:intergenic
CATGAGTTTGTTCTTGTAGG+AGG 0.437477 7_4:-27175832 Msa1147740:CDS
GTTCAAGGTTAAGGCCACTT+TGG 0.441611 7_4:-27176184 Msa1147740:CDS
GGATGAGGAGGTTAAGAAGA+AGG 0.443092 7_4:-27175221 Msa1147740:CDS
TCGGTGAAGGCAACGTAAGA+AGG 0.448873 7_4:+27176732 None:intergenic
AAATTTGAGCTCTCAGCAGC+AGG 0.450657 7_4:-27175442 Msa1147740:CDS
GTAGGGATCATAGTATTCTT+CGG 0.456815 7_4:+27175571 None:intergenic
CCAGATGAAGCTGTAGCATA+TGG 0.458386 7_4:-27175721 Msa1147740:CDS
AGTCTTGGTGTTGAAACTAA+AGG 0.463181 7_4:-27175616 Msa1147740:CDS
CTCTTTAGTAGTACCAAGAA+AGG 0.463823 7_4:-27175416 Msa1147740:CDS
GCGACGACCAATCAAACGTT+TGG 0.486511 7_4:+27176638 None:intergenic
ATGAGTTTGTTCTTGTAGGA+GGG 0.488901 7_4:-27175831 Msa1147740:CDS
TGTACCAAGGTCAATGCCTA+TGG 0.490620 7_4:+27176830 None:intergenic
GGAAACTGTGGAAAAGTGTT+TGG 0.491269 7_4:-27175884 Msa1147740:CDS
TGAGTTTGAATTCAAGAAGC+AGG 0.491801 7_4:-27175077 Msa1147740:CDS
GAAGAAGCTTGAGAAGGTAG+TGG 0.492150 7_4:-27175146 Msa1147740:CDS
CAAGAACAAACTCATGAACT+TGG 0.496491 7_4:+27175839 None:intergenic
TGAATTCAAGAAGCAGGAGT+TGG 0.497584 7_4:-27175071 Msa1147740:CDS
GCAGTATAAGGTAGAGGATG+AGG 0.499975 7_4:-27175236 Msa1147740:CDS
TCCTTCGTCAACGGTCACTA+AGG 0.501097 7_4:+27176209 None:intergenic
GAATTATGTTTATGAAATGA+GGG 0.504803 7_4:-27175176 Msa1147740:CDS
ATGGCTTGACAGAAACCAAT+TGG 0.505887 7_4:-27175110 Msa1147740:CDS
AATCAGTCCAACAAGACATA+AGG 0.516258 7_4:-27176605 Msa1147740:CDS
AAGGGGTGACACGGTTCCCT+TGG 0.517703 7_4:+27176751 None:intergenic
ACCTATTAATCTTTCAGTGT+CGG 0.522436 7_4:+27176713 None:intergenic
AGACAAGCTACAAAAGATGC+AGG 0.525606 7_4:-27176375 Msa1147740:CDS
TGTGAGTTGTTGAAGTAAGC+AGG 0.526143 7_4:+27176399 None:intergenic
ATTGAGCTTGATTCACTATG+TGG 0.530275 7_4:-27175982 Msa1147740:CDS
CGTTGACGAAGGAATGTTCA+AGG 0.532858 7_4:-27176199 Msa1147740:CDS
ATCCTCTACCTTATACTGCT+CGG 0.533900 7_4:+27175240 None:intergenic
ATCACTATCACCAACATTGA+GGG 0.534042 7_4:-27175304 Msa1147740:CDS
AGCTTGATTCACTATGTGGA+GGG 0.534646 7_4:-27175978 Msa1147740:CDS
CAATATTGCTGCTTGAACTG+CGG 0.535770 7_4:+27175696 None:intergenic
CGGTGAAGGCAACGTAAGAA+GGG 0.538770 7_4:+27176733 None:intergenic
TAGTGGAGGAAAGTATAGAA+TGG 0.539580 7_4:-27175129 Msa1147740:CDS
TTGTAATTGACAGCAATCAC+GGG 0.544513 7_4:+27176543 None:intergenic
GTATAAGGTAGAGGATGAGG+AGG 0.547804 7_4:-27175233 Msa1147740:CDS
TGTGGAAAAGTGTTTGGTTG+AGG 0.548325 7_4:-27175878 Msa1147740:CDS
GAAGCTTGAGAAGGTAGTGG+AGG 0.549564 7_4:-27175143 Msa1147740:CDS
ACCTCAAGAGATATCTTCCA+TGG 0.553297 7_4:-27176499 Msa1147740:CDS
TTTGTAATTGACAGCAATCA+CGG 0.553769 7_4:+27176542 None:intergenic
ATTTCATAGAAAGTACAAGA+AGG 0.557642 7_4:-27176100 Msa1147740:CDS
CTTGAACATTCCTTCGTCAA+CGG 0.564856 7_4:+27176200 None:intergenic
TGCCGAGCAGTATAAGGTAG+AGG 0.564882 7_4:-27175242 Msa1147740:CDS
AGAGATGAGAAGAATGATGA+GGG 0.564938 7_4:-27175266 Msa1147740:CDS
TAATCTTTCAGTGTCGGTGA+AGG 0.565703 7_4:+27176719 None:intergenic
AAGGAAATGTTTAGAGTCAA+CGG 0.569774 7_4:-27175775 Msa1147740:CDS
GCAGCAATATTGAATACTGA+AGG 0.571285 7_4:-27175685 Msa1147740:CDS
TTGGGAGATACTCATTTGGG+TGG 0.571754 7_4:-27176165 Msa1147740:CDS
GACAAGAAAATGTGGAGAGA+AGG 0.578701 7_4:-27176282 Msa1147740:CDS
GATCACTATCACCAACATTG+AGG 0.578963 7_4:-27175305 Msa1147740:CDS
GAGAGTGAAGAAGCTTGAGA+AGG 0.581572 7_4:-27175152 Msa1147740:CDS
TATGAAATAATTCAACAAGA+CGG 0.584129 7_4:+27176115 None:intergenic
ACTAAGCCTTCCCTCAATGT+TGG 0.585019 7_4:+27175294 None:intergenic
GTATCGATCAAAGTGTATGA+AGG 0.587666 7_4:-27175502 Msa1147740:CDS
TACACTATCTTGATTATCAG+AGG 0.588367 7_4:+27175522 None:intergenic
GAGCTTGATTCACTATGTGG+AGG 0.595124 7_4:-27175979 Msa1147740:CDS
TGCAGCTGTAGCTTGTACCA+AGG 0.595496 7_4:+27176817 None:intergenic
AGAATTCCAAAGCTTTGGGG+AGG 0.611200 7_4:-27176062 Msa1147740:CDS
TAAGCAATAGCAGCTGCAGT+AGG 0.618882 7_4:+27176312 None:intergenic
GTGATTGCTGTCAATTACAA+AGG 0.623404 7_4:-27176540 Msa1147740:CDS
GTGAGAATTCCAAAGCTTTG+GGG 0.624343 7_4:-27176065 Msa1147740:CDS
AAGAGATGAGAAGAATGATG+AGG 0.628540 7_4:-27175267 Msa1147740:CDS
CAACGTAAGAAGGGGTGACA+CGG 0.629570 7_4:+27176742 None:intergenic
AAATCCATAGGCATTGACCT+TGG 0.630161 7_4:-27176834 Msa1147740:CDS
AGATCATTCCAAACGACCAA+GGG 0.630317 7_4:-27176767 Msa1147740:CDS
GAGATCATTCCAAACGACCA+AGG 0.630381 7_4:-27176768 Msa1147740:CDS
ATGGTTTGGACAAGAAAATG+TGG 0.630603 7_4:-27176290 Msa1147740:CDS
TCCTTAGTGACCGTTGACGA+AGG 0.634054 7_4:-27176210 Msa1147740:CDS
AATTTGAGCTCTCAGCAGCA+GGG 0.636454 7_4:-27175441 Msa1147740:CDS
CAAATGAGTATCTCCCAAAG+TGG 0.637746 7_4:+27176170 None:intergenic
ACCATGGAAGATATCTCTTG+AGG 0.641800 7_4:+27176498 None:intergenic
AGGAGAACATGCTAAGACCA+AGG 0.645015 7_4:-27175482 Msa1147740:CDS
GACAAGCTACAAAAGATGCA+GGG 0.645331 7_4:-27176374 Msa1147740:CDS
CTATCACCAACATTGAGGGA+AGG 0.646725 7_4:-27175300 Msa1147740:CDS
CAGCATGCGAGAAAGCAAAG+AGG 0.658762 7_4:-27176032 Msa1147740:CDS
GGTGAAGGCAACGTAAGAAG+GGG 0.669245 7_4:+27176734 None:intergenic
ATTGCAGTGTGGCGAAACAA+TGG 0.672404 7_4:-27176795 Msa1147740:CDS
CTTTAACTTAGACAACACCA+TGG 0.681981 7_4:+27176482 None:intergenic
CTGCTGAAGATGAGACACAA+GGG 0.687282 7_4:-27175339 Msa1147740:CDS
GCTACAGCTGCATTGCAGTG+TGG 0.691567 7_4:-27176806 Msa1147740:CDS
CTTGGTGTTGAAACTAAAGG+TGG 0.707841 7_4:-27175613 Msa1147740:CDS
ACTGCTGAAGATGAGACACA+AGG 0.722680 7_4:-27175340 Msa1147740:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTTGATTTTGATAACAATT+TGG - chr7_4:27175758-27175777 Msa1147740:CDS 20.0%
!! TATGAAATAATTCAACAAGA+CGG + chr7_4:27175788-27175807 None:intergenic 20.0%
!!! TTTTTTTGAGGAAATAAACA+AGG - chr7_4:27175974-27175993 Msa1147740:CDS 20.0%
!! TCAAAACAAACATTGATATT+TGG + chr7_4:27176512-27176531 None:intergenic 20.0%
!! AGAATTATGTTTATGAAATG+AGG - chr7_4:27176723-27176742 Msa1147740:CDS 20.0%
!! GAATTATGTTTATGAAATGA+GGG - chr7_4:27176724-27176743 Msa1147740:CDS 20.0%
!!! TGTTGATTTTGATAACAATT+TGG - chr7_4:27175758-27175777 Msa1147740:CDS 20.0%
!! TATGAAATAATTCAACAAGA+CGG + chr7_4:27175788-27175807 None:intergenic 20.0%
!!! TTTTTTTGAGGAAATAAACA+AGG - chr7_4:27175974-27175993 Msa1147740:CDS 20.0%
!! TCAAAACAAACATTGATATT+TGG + chr7_4:27176512-27176531 None:intergenic 20.0%
!! AGAATTATGTTTATGAAATG+AGG - chr7_4:27176723-27176742 Msa1147740:CDS 20.0%
!! GAATTATGTTTATGAAATGA+GGG - chr7_4:27176724-27176743 Msa1147740:CDS 20.0%
!!! ATTTTTGGCTAATTGGTTTA+TGG + chr7_4:27175220-27175239 None:intergenic 25.0%
! GAAATTGCTGAAACATATTT+GGG - chr7_4:27175441-27175460 Msa1147740:CDS 25.0%
!! ATTTCATAGAAAGTACAAGA+AGG - chr7_4:27175800-27175819 Msa1147740:CDS 25.0%
! TTCAATAGTTGTTGAATCTT+TGG + chr7_4:27176107-27176126 None:intergenic 25.0%
! AAAGATTCAACAACTATTGA+AGG - chr7_4:27176106-27176125 Msa1147740:CDS 25.0%
!!! TGTTTTGATGTTGATGTTAA+TGG - chr7_4:27176524-27176543 Msa1147740:CDS 25.0%
!! TGTTGATGTTAATGGAATTT+TGG - chr7_4:27176532-27176551 Msa1147740:CDS 25.0%
!!! ATTTTTGGCTAATTGGTTTA+TGG + chr7_4:27175220-27175239 None:intergenic 25.0%
! GAAATTGCTGAAACATATTT+GGG - chr7_4:27175441-27175460 Msa1147740:CDS 25.0%
!! ATTTCATAGAAAGTACAAGA+AGG - chr7_4:27175800-27175819 Msa1147740:CDS 25.0%
! TTCAATAGTTGTTGAATCTT+TGG + chr7_4:27176107-27176126 None:intergenic 25.0%
! AAAGATTCAACAACTATTGA+AGG - chr7_4:27176106-27176125 Msa1147740:CDS 25.0%
!!! TGTTTTGATGTTGATGTTAA+TGG - chr7_4:27176524-27176543 Msa1147740:CDS 25.0%
!! TGTTGATGTTAATGGAATTT+TGG - chr7_4:27176532-27176551 Msa1147740:CDS 25.0%
ACAAGAAAAAGCAAATCCAT+AGG - chr7_4:27175054-27175073 Msa1147740:CDS 30.0%
ACCTATTAATCTTTCAGTGT+CGG + chr7_4:27175190-27175209 None:intergenic 30.0%
TTTGTAATTGACAGCAATCA+CGG + chr7_4:27175361-27175380 None:intergenic 30.0%
! GAGGTGAAAAATGTTTTTCT+TGG + chr7_4:27175386-27175405 None:intergenic 30.0%
GGAAATTGCTGAAACATATT+TGG - chr7_4:27175440-27175459 Msa1147740:CDS 30.0%
AATGTTCTTGTCTTTGATCT+TGG - chr7_4:27175648-27175667 Msa1147740:CDS 30.0%
!!! TGTTACTAGAGCTTTTTTTG+AGG - chr7_4:27175962-27175981 Msa1147740:CDS 30.0%
! GGATTTGTTCAAAAAATGCA+TGG - chr7_4:27175995-27176014 Msa1147740:CDS 30.0%
! AAGGAAATGTTTAGAGTCAA+CGG - chr7_4:27176125-27176144 Msa1147740:CDS 30.0%
!! ATACATTCTCCTTTTTCGTA+GGG + chr7_4:27176349-27176368 None:intergenic 30.0%
!! AATACATTCTCCTTTTTCGT+AGG + chr7_4:27176350-27176369 None:intergenic 30.0%
TACACTATCTTGATTATCAG+AGG + chr7_4:27176381-27176400 None:intergenic 30.0%
! TTGATATTTGGAACCTTTCT+TGG + chr7_4:27176500-27176519 None:intergenic 30.0%
ACAAGAAAAAGCAAATCCAT+AGG - chr7_4:27175054-27175073 Msa1147740:CDS 30.0%
ACCTATTAATCTTTCAGTGT+CGG + chr7_4:27175190-27175209 None:intergenic 30.0%
TTTGTAATTGACAGCAATCA+CGG + chr7_4:27175361-27175380 None:intergenic 30.0%
! GAGGTGAAAAATGTTTTTCT+TGG + chr7_4:27175386-27175405 None:intergenic 30.0%
GGAAATTGCTGAAACATATT+TGG - chr7_4:27175440-27175459 Msa1147740:CDS 30.0%
AATGTTCTTGTCTTTGATCT+TGG - chr7_4:27175648-27175667 Msa1147740:CDS 30.0%
!!! TGTTACTAGAGCTTTTTTTG+AGG - chr7_4:27175962-27175981 Msa1147740:CDS 30.0%
! GGATTTGTTCAAAAAATGCA+TGG - chr7_4:27175995-27176014 Msa1147740:CDS 30.0%
! AAGGAAATGTTTAGAGTCAA+CGG - chr7_4:27176125-27176144 Msa1147740:CDS 30.0%
!! ATACATTCTCCTTTTTCGTA+GGG + chr7_4:27176349-27176368 None:intergenic 30.0%
!! AATACATTCTCCTTTTTCGT+AGG + chr7_4:27176350-27176369 None:intergenic 30.0%
TACACTATCTTGATTATCAG+AGG + chr7_4:27176381-27176400 None:intergenic 30.0%
! TTGATATTTGGAACCTTTCT+TGG + chr7_4:27176500-27176519 None:intergenic 30.0%
ACCGACACTGAAAGATTAAT+AGG - chr7_4:27175186-27175205 Msa1147740:CDS 35.0%
!!! TGTGTGGATTTTTGGCTAAT+TGG + chr7_4:27175227-27175246 None:intergenic 35.0%
!!! AATGGTGTTGTGTGGATTTT+TGG + chr7_4:27175235-27175254 None:intergenic 35.0%
CAAACGTTTGGCATCAAAAA+TGG + chr7_4:27175253-27175272 None:intergenic 35.0%
TTTGATGCCAAACGTTTGAT+TGG - chr7_4:27175255-27175274 Msa1147740:CDS 35.0%
! TTATGTCTTGTTGGACTGAT+TGG + chr7_4:27175296-27175315 None:intergenic 35.0%
AATCAGTCCAACAAGACATA+AGG - chr7_4:27175295-27175314 Msa1147740:CDS 35.0%
! TCCAACAAGACATAAGGTTT+TGG - chr7_4:27175301-27175320 Msa1147740:CDS 35.0%
!! CATAAGGTTTTGGCCTTTTA+AGG - chr7_4:27175311-27175330 Msa1147740:CDS 35.0%
! TGGTTTGGAACAACCTTAAA+AGG + chr7_4:27175327-27175346 None:intergenic 35.0%
TTGTAATTGACAGCAATCAC+GGG + chr7_4:27175360-27175379 None:intergenic 35.0%
GTGATTGCTGTCAATTACAA+AGG - chr7_4:27175360-27175379 Msa1147740:CDS 35.0%
! CTTTAACTTAGACAACACCA+TGG + chr7_4:27175421-27175440 None:intergenic 35.0%
!! CATGGTGTTGTCTAAGTTAA+AGG - chr7_4:27175419-27175438 Msa1147740:CDS 35.0%
!!! TTGCTGGTTTTAATGTGATG+AGG - chr7_4:27175553-27175572 Msa1147740:CDS 35.0%
! ATGGTTTGGACAAGAAAATG+TGG - chr7_4:27175610-27175629 Msa1147740:CDS 35.0%
! ACTTTGGGAGATACTCATTT+GGG - chr7_4:27175732-27175751 Msa1147740:CDS 35.0%
AGTGAGAATTCCAAAGCTTT+GGG - chr7_4:27175834-27175853 Msa1147740:CDS 35.0%
ATTGAGCTTGATTCACTATG+TGG - chr7_4:27175918-27175937 Msa1147740:CDS 35.0%
CAAAAAATGCATGGAAACTG+TGG - chr7_4:27176004-27176023 Msa1147740:CDS 35.0%
CAAGAACAAACTCATGAACT+TGG + chr7_4:27176064-27176083 None:intergenic 35.0%
! GTTCATGAGTTTGTTCTTGT+AGG - chr7_4:27176065-27176084 Msa1147740:CDS 35.0%
! ATGAGTTTGTTCTTGTAGGA+GGG - chr7_4:27176069-27176088 Msa1147740:CDS 35.0%
! TCTGGATTAATGCTTTTGCA+AGG + chr7_4:27176164-27176183 None:intergenic 35.0%
GCAGCAATATTGAATACTGA+AGG - chr7_4:27176215-27176234 Msa1147740:CDS 35.0%
! GATGTTATGCCTTTTAGTCT+TGG - chr7_4:27176269-27176288 Msa1147740:CDS 35.0%
GTTTCAACACCAAGACTAAA+AGG + chr7_4:27176281-27176300 None:intergenic 35.0%
!! AGTCTTGGTGTTGAAACTAA+AGG - chr7_4:27176284-27176303 Msa1147740:CDS 35.0%
GTAGGGATCATAGTATTCTT+CGG + chr7_4:27176332-27176351 None:intergenic 35.0%
TACTATGATCCCTACGAAAA+AGG - chr7_4:27176337-27176356 Msa1147740:CDS 35.0%
! GTATCGATCAAAGTGTATGA+AGG - chr7_4:27176398-27176417 Msa1147740:CDS 35.0%
CTCTTTAGTAGTACCAAGAA+AGG - chr7_4:27176484-27176503 Msa1147740:CDS 35.0%
ATCACTATCACCAACATTGA+GGG - chr7_4:27176596-27176615 Msa1147740:CDS 35.0%
ATCATTCTTCTCATCTCTTC+AGG + chr7_4:27176632-27176651 None:intergenic 35.0%
AAGAGATGAGAAGAATGATG+AGG - chr7_4:27176633-27176652 Msa1147740:CDS 35.0%
AGAGATGAGAAGAATGATGA+GGG - chr7_4:27176634-27176653 Msa1147740:CDS 35.0%
! TAGTGGAGGAAAGTATAGAA+TGG - chr7_4:27176771-27176790 Msa1147740:CDS 35.0%
ACTCATCAATTTCTGCCAAT+TGG + chr7_4:27176808-27176827 None:intergenic 35.0%
TGAGTTTGAATTCAAGAAGC+AGG - chr7_4:27176823-27176842 Msa1147740:CDS 35.0%
ACCGACACTGAAAGATTAAT+AGG - chr7_4:27175186-27175205 Msa1147740:CDS 35.0%
!!! TGTGTGGATTTTTGGCTAAT+TGG + chr7_4:27175227-27175246 None:intergenic 35.0%
!!! AATGGTGTTGTGTGGATTTT+TGG + chr7_4:27175235-27175254 None:intergenic 35.0%
CAAACGTTTGGCATCAAAAA+TGG + chr7_4:27175253-27175272 None:intergenic 35.0%
TTTGATGCCAAACGTTTGAT+TGG - chr7_4:27175255-27175274 Msa1147740:CDS 35.0%
! TTATGTCTTGTTGGACTGAT+TGG + chr7_4:27175296-27175315 None:intergenic 35.0%
AATCAGTCCAACAAGACATA+AGG - chr7_4:27175295-27175314 Msa1147740:CDS 35.0%
! TCCAACAAGACATAAGGTTT+TGG - chr7_4:27175301-27175320 Msa1147740:CDS 35.0%
!! CATAAGGTTTTGGCCTTTTA+AGG - chr7_4:27175311-27175330 Msa1147740:CDS 35.0%
! TGGTTTGGAACAACCTTAAA+AGG + chr7_4:27175327-27175346 None:intergenic 35.0%
TTGTAATTGACAGCAATCAC+GGG + chr7_4:27175360-27175379 None:intergenic 35.0%
GTGATTGCTGTCAATTACAA+AGG - chr7_4:27175360-27175379 Msa1147740:CDS 35.0%
! CTTTAACTTAGACAACACCA+TGG + chr7_4:27175421-27175440 None:intergenic 35.0%
!! CATGGTGTTGTCTAAGTTAA+AGG - chr7_4:27175419-27175438 Msa1147740:CDS 35.0%
!!! TTGCTGGTTTTAATGTGATG+AGG - chr7_4:27175553-27175572 Msa1147740:CDS 35.0%
! ATGGTTTGGACAAGAAAATG+TGG - chr7_4:27175610-27175629 Msa1147740:CDS 35.0%
! ACTTTGGGAGATACTCATTT+GGG - chr7_4:27175732-27175751 Msa1147740:CDS 35.0%
AGTGAGAATTCCAAAGCTTT+GGG - chr7_4:27175834-27175853 Msa1147740:CDS 35.0%
ATTGAGCTTGATTCACTATG+TGG - chr7_4:27175918-27175937 Msa1147740:CDS 35.0%
CAAAAAATGCATGGAAACTG+TGG - chr7_4:27176004-27176023 Msa1147740:CDS 35.0%
CAAGAACAAACTCATGAACT+TGG + chr7_4:27176064-27176083 None:intergenic 35.0%
! GTTCATGAGTTTGTTCTTGT+AGG - chr7_4:27176065-27176084 Msa1147740:CDS 35.0%
! ATGAGTTTGTTCTTGTAGGA+GGG - chr7_4:27176069-27176088 Msa1147740:CDS 35.0%
! TCTGGATTAATGCTTTTGCA+AGG + chr7_4:27176164-27176183 None:intergenic 35.0%
GCAGCAATATTGAATACTGA+AGG - chr7_4:27176215-27176234 Msa1147740:CDS 35.0%
! GATGTTATGCCTTTTAGTCT+TGG - chr7_4:27176269-27176288 Msa1147740:CDS 35.0%
GTTTCAACACCAAGACTAAA+AGG + chr7_4:27176281-27176300 None:intergenic 35.0%
!! AGTCTTGGTGTTGAAACTAA+AGG - chr7_4:27176284-27176303 Msa1147740:CDS 35.0%
GTAGGGATCATAGTATTCTT+CGG + chr7_4:27176332-27176351 None:intergenic 35.0%
TACTATGATCCCTACGAAAA+AGG - chr7_4:27176337-27176356 Msa1147740:CDS 35.0%
! GTATCGATCAAAGTGTATGA+AGG - chr7_4:27176398-27176417 Msa1147740:CDS 35.0%
CTCTTTAGTAGTACCAAGAA+AGG - chr7_4:27176484-27176503 Msa1147740:CDS 35.0%
ATCACTATCACCAACATTGA+GGG - chr7_4:27176596-27176615 Msa1147740:CDS 35.0%
ATCATTCTTCTCATCTCTTC+AGG + chr7_4:27176632-27176651 None:intergenic 35.0%
AAGAGATGAGAAGAATGATG+AGG - chr7_4:27176633-27176652 Msa1147740:CDS 35.0%
AGAGATGAGAAGAATGATGA+GGG - chr7_4:27176634-27176653 Msa1147740:CDS 35.0%
! TAGTGGAGGAAAGTATAGAA+TGG - chr7_4:27176771-27176790 Msa1147740:CDS 35.0%
ACTCATCAATTTCTGCCAAT+TGG + chr7_4:27176808-27176827 None:intergenic 35.0%
TGAGTTTGAATTCAAGAAGC+AGG - chr7_4:27176823-27176842 Msa1147740:CDS 35.0%
!! AAATCCATAGGCATTGACCT+TGG - chr7_4:27175066-27175085 Msa1147740:CDS 40.0%
AGATCATTCCAAACGACCAA+GGG - chr7_4:27175133-27175152 Msa1147740:CDS 40.0%
!! TAATCTTTCAGTGTCGGTGA+AGG + chr7_4:27175184-27175203 None:intergenic 40.0%
!! GCATCAAAAATGGTGTTGTG+TGG + chr7_4:27175243-27175262 None:intergenic 40.0%
GCCAAAACCTTATGTCTTGT+TGG + chr7_4:27175305-27175324 None:intergenic 40.0%
ACCTCAAGAGATATCTTCCA+TGG - chr7_4:27175401-27175420 Msa1147740:CDS 40.0%
ACCATGGAAGATATCTCTTG+AGG + chr7_4:27175405-27175424 None:intergenic 40.0%
TGTGAGTTGTTGAAGTAAGC+AGG + chr7_4:27175504-27175523 None:intergenic 40.0%
AGACAAGCTACAAAAGATGC+AGG - chr7_4:27175525-27175544 Msa1147740:CDS 40.0%
GACAAGCTACAAAAGATGCA+GGG - chr7_4:27175526-27175545 Msa1147740:CDS 40.0%
AAAGATGCAGGGAAAATTGC+TGG - chr7_4:27175537-27175556 Msa1147740:CDS 40.0%
AGCTGCTATTGCTTATGGTT+TGG - chr7_4:27175596-27175615 Msa1147740:CDS 40.0%
GACAAGAAAATGTGGAGAGA+AGG - chr7_4:27175618-27175637 Msa1147740:CDS 40.0%
GTTCTTGTCTTTGATCTTGG+TGG - chr7_4:27175651-27175670 Msa1147740:CDS 40.0%
CTTGAACATTCCTTCGTCAA+CGG + chr7_4:27175703-27175722 None:intergenic 40.0%
CGAAGGAATGTTCAAGGTTA+AGG - chr7_4:27175707-27175726 Msa1147740:CDS 40.0%
! TTCAAGGTTAAGGCCACTTT+GGG - chr7_4:27175717-27175736 Msa1147740:CDS 40.0%
CAAATGAGTATCTCCCAAAG+TGG + chr7_4:27175733-27175752 None:intergenic 40.0%
! CACTTTGGGAGATACTCATT+TGG - chr7_4:27175731-27175750 Msa1147740:CDS 40.0%
CAGTGAGAATTCCAAAGCTT+TGG - chr7_4:27175833-27175852 Msa1147740:CDS 40.0%
GTGAGAATTCCAAAGCTTTG+GGG - chr7_4:27175835-27175854 Msa1147740:CDS 40.0%
AGCTTGATTCACTATGTGGA+GGG - chr7_4:27175922-27175941 Msa1147740:CDS 40.0%
!! GGAAACTGTGGAAAAGTGTT+TGG - chr7_4:27176016-27176035 Msa1147740:CDS 40.0%
!! TGTGGAAAAGTGTTTGGTTG+AGG - chr7_4:27176022-27176041 Msa1147740:CDS 40.0%
! CATGAGTTTGTTCTTGTAGG+AGG - chr7_4:27176068-27176087 Msa1147740:CDS 40.0%
! CAATATTGCTGCTTGAACTG+CGG + chr7_4:27176207-27176226 None:intergenic 40.0%
!! CTTGGTGTTGAAACTAAAGG+TGG - chr7_4:27176287-27176306 Msa1147740:CDS 40.0%
! ACCAAGGACAACTTTTTGCT+CGG - chr7_4:27176434-27176453 Msa1147740:CDS 40.0%
GATCACTATCACCAACATTG+AGG - chr7_4:27176595-27176614 Msa1147740:CDS 40.0%
ATCCTCTACCTTATACTGCT+CGG + chr7_4:27176663-27176682 None:intergenic 40.0%
ATGGCTTGACAGAAACCAAT+TGG - chr7_4:27176790-27176809 Msa1147740:CDS 40.0%
TGAATTCAAGAAGCAGGAGT+TGG - chr7_4:27176829-27176848 Msa1147740:CDS 40.0%
!! AAATCCATAGGCATTGACCT+TGG - chr7_4:27175066-27175085 Msa1147740:CDS 40.0%
AGATCATTCCAAACGACCAA+GGG - chr7_4:27175133-27175152 Msa1147740:CDS 40.0%
!! TAATCTTTCAGTGTCGGTGA+AGG + chr7_4:27175184-27175203 None:intergenic 40.0%
!! GCATCAAAAATGGTGTTGTG+TGG + chr7_4:27175243-27175262 None:intergenic 40.0%
GCCAAAACCTTATGTCTTGT+TGG + chr7_4:27175305-27175324 None:intergenic 40.0%
ACCTCAAGAGATATCTTCCA+TGG - chr7_4:27175401-27175420 Msa1147740:CDS 40.0%
ACCATGGAAGATATCTCTTG+AGG + chr7_4:27175405-27175424 None:intergenic 40.0%
TGTGAGTTGTTGAAGTAAGC+AGG + chr7_4:27175504-27175523 None:intergenic 40.0%
AGACAAGCTACAAAAGATGC+AGG - chr7_4:27175525-27175544 Msa1147740:CDS 40.0%
GACAAGCTACAAAAGATGCA+GGG - chr7_4:27175526-27175545 Msa1147740:CDS 40.0%
AAAGATGCAGGGAAAATTGC+TGG - chr7_4:27175537-27175556 Msa1147740:CDS 40.0%
AGCTGCTATTGCTTATGGTT+TGG - chr7_4:27175596-27175615 Msa1147740:CDS 40.0%
GACAAGAAAATGTGGAGAGA+AGG - chr7_4:27175618-27175637 Msa1147740:CDS 40.0%
GTTCTTGTCTTTGATCTTGG+TGG - chr7_4:27175651-27175670 Msa1147740:CDS 40.0%
CTTGAACATTCCTTCGTCAA+CGG + chr7_4:27175703-27175722 None:intergenic 40.0%
CGAAGGAATGTTCAAGGTTA+AGG - chr7_4:27175707-27175726 Msa1147740:CDS 40.0%
! TTCAAGGTTAAGGCCACTTT+GGG - chr7_4:27175717-27175736 Msa1147740:CDS 40.0%
CAAATGAGTATCTCCCAAAG+TGG + chr7_4:27175733-27175752 None:intergenic 40.0%
! CACTTTGGGAGATACTCATT+TGG - chr7_4:27175731-27175750 Msa1147740:CDS 40.0%
CAGTGAGAATTCCAAAGCTT+TGG - chr7_4:27175833-27175852 Msa1147740:CDS 40.0%
GTGAGAATTCCAAAGCTTTG+GGG - chr7_4:27175835-27175854 Msa1147740:CDS 40.0%
AGCTTGATTCACTATGTGGA+GGG - chr7_4:27175922-27175941 Msa1147740:CDS 40.0%
!! GGAAACTGTGGAAAAGTGTT+TGG - chr7_4:27176016-27176035 Msa1147740:CDS 40.0%
!! TGTGGAAAAGTGTTTGGTTG+AGG - chr7_4:27176022-27176041 Msa1147740:CDS 40.0%
! CATGAGTTTGTTCTTGTAGG+AGG - chr7_4:27176068-27176087 Msa1147740:CDS 40.0%
! CAATATTGCTGCTTGAACTG+CGG + chr7_4:27176207-27176226 None:intergenic 40.0%
!! CTTGGTGTTGAAACTAAAGG+TGG - chr7_4:27176287-27176306 Msa1147740:CDS 40.0%
! ACCAAGGACAACTTTTTGCT+CGG - chr7_4:27176434-27176453 Msa1147740:CDS 40.0%
GATCACTATCACCAACATTG+AGG - chr7_4:27176595-27176614 Msa1147740:CDS 40.0%
ATCCTCTACCTTATACTGCT+CGG + chr7_4:27176663-27176682 None:intergenic 40.0%
ATGGCTTGACAGAAACCAAT+TGG - chr7_4:27176790-27176809 Msa1147740:CDS 40.0%
TGAATTCAAGAAGCAGGAGT+TGG - chr7_4:27176829-27176848 Msa1147740:CDS 40.0%
TGTACCAAGGTCAATGCCTA+TGG + chr7_4:27175073-27175092 None:intergenic 45.0%
ATTGCAGTGTGGCGAAACAA+TGG - chr7_4:27175105-27175124 Msa1147740:CDS 45.0%
GAGATCATTCCAAACGACCA+AGG - chr7_4:27175132-27175151 Msa1147740:CDS 45.0%
ACGGGTTTGTCTTTGTGGTT+TGG + chr7_4:27175342-27175361 None:intergenic 45.0%
CAATCACGGGTTTGTCTTTG+TGG + chr7_4:27175347-27175366 None:intergenic 45.0%
TAAGCAATAGCAGCTGCAGT+AGG + chr7_4:27175591-27175610 None:intergenic 45.0%
ACTGCAGCTGCTATTGCTTA+TGG - chr7_4:27175591-27175610 Msa1147740:CDS 45.0%
CTTGTCTTTGATCTTGGTGG+TGG - chr7_4:27175654-27175673 Msa1147740:CDS 45.0%
CGTTGACGAAGGAATGTTCA+AGG - chr7_4:27175701-27175720 Msa1147740:CDS 45.0%
GTTCAAGGTTAAGGCCACTT+TGG - chr7_4:27175716-27175735 Msa1147740:CDS 45.0%
TTGGGAGATACTCATTTGGG+TGG - chr7_4:27175735-27175754 Msa1147740:CDS 45.0%
!! AGAATTCCAAAGCTTTGGGG+AGG - chr7_4:27175838-27175857 Msa1147740:CDS 45.0%
TCTTAACCTCCCCAAAGCTT+TGG + chr7_4:27175847-27175866 None:intergenic 45.0%
GAGCTTGATTCACTATGTGG+AGG - chr7_4:27175921-27175940 Msa1147740:CDS 45.0%
CCATATGCTACAGCTTCATC+TGG + chr7_4:27176182-27176201 None:intergenic 45.0%
CCAGATGAAGCTGTAGCATA+TGG - chr7_4:27176179-27176198 Msa1147740:CDS 45.0%
AGGAGAACATGCTAAGACCA+AGG - chr7_4:27176418-27176437 Msa1147740:CDS 45.0%
ACCGAGCAAAAAGTTGTCCT+TGG + chr7_4:27176438-27176457 None:intergenic 45.0%
AAATTTGAGCTCTCAGCAGC+AGG - chr7_4:27176458-27176477 Msa1147740:CDS 45.0%
AATTTGAGCTCTCAGCAGCA+GGG - chr7_4:27176459-27176478 Msa1147740:CDS 45.0%
ACTGCTGAAGATGAGACACA+AGG - chr7_4:27176560-27176579 Msa1147740:CDS 45.0%
CTGCTGAAGATGAGACACAA+GGG - chr7_4:27176561-27176580 Msa1147740:CDS 45.0%
CTATCACCAACATTGAGGGA+AGG - chr7_4:27176600-27176619 Msa1147740:CDS 45.0%
ACTAAGCCTTCCCTCAATGT+TGG + chr7_4:27176609-27176628 None:intergenic 45.0%
GCAGTATAAGGTAGAGGATG+AGG - chr7_4:27176664-27176683 Msa1147740:CDS 45.0%
GTATAAGGTAGAGGATGAGG+AGG - chr7_4:27176667-27176686 Msa1147740:CDS 45.0%
GGATGAGGAGGTTAAGAAGA+AGG - chr7_4:27176679-27176698 Msa1147740:CDS 45.0%
GAGAGTGAAGAAGCTTGAGA+AGG - chr7_4:27176748-27176767 Msa1147740:CDS 45.0%
GAAGAAGCTTGAGAAGGTAG+TGG - chr7_4:27176754-27176773 Msa1147740:CDS 45.0%
TGTACCAAGGTCAATGCCTA+TGG + chr7_4:27175073-27175092 None:intergenic 45.0%
ATTGCAGTGTGGCGAAACAA+TGG - chr7_4:27175105-27175124 Msa1147740:CDS 45.0%
GAGATCATTCCAAACGACCA+AGG - chr7_4:27175132-27175151 Msa1147740:CDS 45.0%
ACGGGTTTGTCTTTGTGGTT+TGG + chr7_4:27175342-27175361 None:intergenic 45.0%
CAATCACGGGTTTGTCTTTG+TGG + chr7_4:27175347-27175366 None:intergenic 45.0%
TAAGCAATAGCAGCTGCAGT+AGG + chr7_4:27175591-27175610 None:intergenic 45.0%
ACTGCAGCTGCTATTGCTTA+TGG - chr7_4:27175591-27175610 Msa1147740:CDS 45.0%
CTTGTCTTTGATCTTGGTGG+TGG - chr7_4:27175654-27175673 Msa1147740:CDS 45.0%
CGTTGACGAAGGAATGTTCA+AGG - chr7_4:27175701-27175720 Msa1147740:CDS 45.0%
GTTCAAGGTTAAGGCCACTT+TGG - chr7_4:27175716-27175735 Msa1147740:CDS 45.0%
TTGGGAGATACTCATTTGGG+TGG - chr7_4:27175735-27175754 Msa1147740:CDS 45.0%
!! AGAATTCCAAAGCTTTGGGG+AGG - chr7_4:27175838-27175857 Msa1147740:CDS 45.0%
TCTTAACCTCCCCAAAGCTT+TGG + chr7_4:27175847-27175866 None:intergenic 45.0%
GAGCTTGATTCACTATGTGG+AGG - chr7_4:27175921-27175940 Msa1147740:CDS 45.0%
CCATATGCTACAGCTTCATC+TGG + chr7_4:27176182-27176201 None:intergenic 45.0%
CCAGATGAAGCTGTAGCATA+TGG - chr7_4:27176179-27176198 Msa1147740:CDS 45.0%
AGGAGAACATGCTAAGACCA+AGG - chr7_4:27176418-27176437 Msa1147740:CDS 45.0%
ACCGAGCAAAAAGTTGTCCT+TGG + chr7_4:27176438-27176457 None:intergenic 45.0%
AAATTTGAGCTCTCAGCAGC+AGG - chr7_4:27176458-27176477 Msa1147740:CDS 45.0%
AATTTGAGCTCTCAGCAGCA+GGG - chr7_4:27176459-27176478 Msa1147740:CDS 45.0%
ACTGCTGAAGATGAGACACA+AGG - chr7_4:27176560-27176579 Msa1147740:CDS 45.0%
CTGCTGAAGATGAGACACAA+GGG - chr7_4:27176561-27176580 Msa1147740:CDS 45.0%
CTATCACCAACATTGAGGGA+AGG - chr7_4:27176600-27176619 Msa1147740:CDS 45.0%
ACTAAGCCTTCCCTCAATGT+TGG + chr7_4:27176609-27176628 None:intergenic 45.0%
GCAGTATAAGGTAGAGGATG+AGG - chr7_4:27176664-27176683 Msa1147740:CDS 45.0%
GTATAAGGTAGAGGATGAGG+AGG - chr7_4:27176667-27176686 Msa1147740:CDS 45.0%
GGATGAGGAGGTTAAGAAGA+AGG - chr7_4:27176679-27176698 Msa1147740:CDS 45.0%
GAGAGTGAAGAAGCTTGAGA+AGG - chr7_4:27176748-27176767 Msa1147740:CDS 45.0%
GAAGAAGCTTGAGAAGGTAG+TGG - chr7_4:27176754-27176773 Msa1147740:CDS 45.0%
! TGCAGCTGTAGCTTGTACCA+AGG + chr7_4:27175086-27175105 None:intergenic 50.0%
CAACGTAAGAAGGGGTGACA+CGG + chr7_4:27175161-27175180 None:intergenic 50.0%
GGTGAAGGCAACGTAAGAAG+GGG + chr7_4:27175169-27175188 None:intergenic 50.0%
CGGTGAAGGCAACGTAAGAA+GGG + chr7_4:27175170-27175189 None:intergenic 50.0%
TCGGTGAAGGCAACGTAAGA+AGG + chr7_4:27175171-27175190 None:intergenic 50.0%
GCGACGACCAATCAAACGTT+TGG + chr7_4:27175265-27175284 None:intergenic 50.0%
TCCTTAGTGACCGTTGACGA+AGG - chr7_4:27175690-27175709 Msa1147740:CDS 50.0%
TCCTTCGTCAACGGTCACTA+AGG + chr7_4:27175694-27175713 None:intergenic 50.0%
CAGCATGCGAGAAAGCAAAG+AGG - chr7_4:27175868-27175887 Msa1147740:CDS 50.0%
TGCCGAGCAGTATAAGGTAG+AGG - chr7_4:27176658-27176677 Msa1147740:CDS 50.0%
! GAAGCTTGAGAAGGTAGTGG+AGG - chr7_4:27176757-27176776 Msa1147740:CDS 50.0%
! TGCAGCTGTAGCTTGTACCA+AGG + chr7_4:27175086-27175105 None:intergenic 50.0%
CAACGTAAGAAGGGGTGACA+CGG + chr7_4:27175161-27175180 None:intergenic 50.0%
GGTGAAGGCAACGTAAGAAG+GGG + chr7_4:27175169-27175188 None:intergenic 50.0%
CGGTGAAGGCAACGTAAGAA+GGG + chr7_4:27175170-27175189 None:intergenic 50.0%
TCGGTGAAGGCAACGTAAGA+AGG + chr7_4:27175171-27175190 None:intergenic 50.0%
GCGACGACCAATCAAACGTT+TGG + chr7_4:27175265-27175284 None:intergenic 50.0%
TCCTTAGTGACCGTTGACGA+AGG - chr7_4:27175690-27175709 Msa1147740:CDS 50.0%
TCCTTCGTCAACGGTCACTA+AGG + chr7_4:27175694-27175713 None:intergenic 50.0%
CAGCATGCGAGAAAGCAAAG+AGG - chr7_4:27175868-27175887 Msa1147740:CDS 50.0%
TGCCGAGCAGTATAAGGTAG+AGG - chr7_4:27176658-27176677 Msa1147740:CDS 50.0%
! GAAGCTTGAGAAGGTAGTGG+AGG - chr7_4:27176757-27176776 Msa1147740:CDS 50.0%
GCTACAGCTGCATTGCAGTG+TGG - chr7_4:27175094-27175113 Msa1147740:CDS 55.0%
ACACGGTTCCCTTGGTCGTT+TGG + chr7_4:27175144-27175163 None:intergenic 55.0%
GAGGGATGCCGAGCAGTATA+AGG - chr7_4:27176652-27176671 Msa1147740:CDS 55.0%
GCTACAGCTGCATTGCAGTG+TGG - chr7_4:27175094-27175113 Msa1147740:CDS 55.0%
ACACGGTTCCCTTGGTCGTT+TGG + chr7_4:27175144-27175163 None:intergenic 55.0%
GAGGGATGCCGAGCAGTATA+AGG - chr7_4:27176652-27176671 Msa1147740:CDS 55.0%
AAGGGGTGACACGGTTCCCT+TGG + chr7_4:27175152-27175171 None:intergenic 60.0%
AAGGGGTGACACGGTTCCCT+TGG + chr7_4:27175152-27175171 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 27175048 27176874 27175048 ID=Msa1147740;Name=Msa1147740
chr7_4 mRNA 27175048 27176874 27175048 ID=Msa1147740-mRNA-1;Parent=Msa1147740;Name=Msa1147740-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|608
chr7_4 exon 27175048 27176874 27175048 ID=Msa1147740-mRNA-1:exon:6667;Parent=Msa1147740-mRNA-1
chr7_4 CDS 27175048 27176874 27175048 ID=Msa1147740-mRNA-1:cds;Parent=Msa1147740-mRNA-1
Gene Sequence

>Msa1147740

ATGGCAACAAGAAAAAGCAAATCCATAGGCATTGACCTTGGTACAAGCTACAGCTGCATTGCAGTGTGGCGAAACAATGGTGTTGAGATCATTCCAAACGACCAAGGGAACCGTGTCACCCCTTCTTACGTTGCCTTCACCGACACTGAAAGATTAATAGGTGATGCTGCCATAAACCAATTAGCCAAAAATCCACACAACACCATTTTTGATGCCAAACGTTTGATTGGTCGTCGCTTCTCTGACCAATCAGTCCAACAAGACATAAGGTTTTGGCCTTTTAAGGTTGTTCCAAACCACAAAGACAAACCCGTGATTGCTGTCAATTACAAAGGCCAAGAAAAACATTTTTCACCTCAAGAGATATCTTCCATGGTGTTGTCTAAGTTAAAGGAAATTGCTGAAACATATTTGGGTCATGATCATGAAGTGAACAATGCTGTTATCACTGTTCCTGCTTACTTCAACAACTCACAGAGACAAGCTACAAAAGATGCAGGGAAAATTGCTGGTTTTAATGTGATGAGGATCATCAACGAGCCTACTGCAGCTGCTATTGCTTATGGTTTGGACAAGAAAATGTGGAGAGAAGGCGAGAAGAATGTTCTTGTCTTTGATCTTGGTGGTGGAACTTTTGATGTTTCCTTAGTGACCGTTGACGAAGGAATGTTCAAGGTTAAGGCCACTTTGGGAGATACTCATTTGGGTGGTGTTGATTTTGATAACAATTTGGTGAACCGTCTTGTTGAATTATTTCATAGAAAGTACAAGAAGGATTTGAAGATCAGTGAGAATTCCAAAGCTTTGGGGAGGTTAAGATCAGCATGCGAGAAAGCAAAGAGGTTACTTTCTTCATCATCACAAACAGTTATTGAGCTTGATTCACTATGTGGAGGGATTGATCTACATTTCACTGTTACTAGAGCTTTTTTTGAGGAAATAAACAAGGATTTGTTCAAAAAATGCATGGAAACTGTGGAAAAGTGTTTGGTTGAGGTAAAAATTAGTAAAAGCCAAGTTCATGAGTTTGTTCTTGTAGGAGGGTCTACTAGAATTCCAAAGATTCAACAACTATTGAAGGAAATGTTTAGAGTCAACGGCGAAGTCAAAGAGCCTTGCAAAAGCATTAATCCAGATGAAGCTGTAGCATATGGCGCCGCAGTTCAAGCAGCAATATTGAATACTGAAGGAGACAAGAAAATTGAAGATTTGTTGCTGTTAGATGTTATGCCTTTTAGTCTTGGTGTTGAAACTAAAGGTGGTGTCATGTCTGTTTTGATTCCGAAGAATACTATGATCCCTACGAAAAAGGAGAATGTATTCGCTATAGCCTCTGATAATCAAGATAGTGTATCGATCAAAGTGTATGAAGGAGAACATGCTAAGACCAAGGACAACTTTTTGCTCGGTAAATTTGAGCTCTCAGCAGCAGGGTGCTCTTTAGTAGTACCAAGAAAGGTTCCAAATATCAATGTTTGTTTTGATGTTGATGTTAATGGAATTTTGGAAGTTACTGCTGAAGATGAGACACAAGGGTTGAAAAAGAAGATCACTATCACCAACATTGAGGGAAGGCTTAGTCCTGAAGAGATGAGAAGAATGATGAGGGATGCCGAGCAGTATAAGGTAGAGGATGAGGAGGTTAAGAAGAAGGTGAAAGCAAAGAACTTGTTTGAGAATTATGTTTATGAAATGAGGGAGAGAGTGAAGAAGCTTGAGAAGGTAGTGGAGGAAAGTATAGAATGGCTTGACAGAAACCAATTGGCAGAAATTGATGAGTTTGAATTCAAGAAGCAGGAGTTGGAAAATAGTATGAAGTTTCTCTAA

Protein sequence

>Msa1147740

MATRKSKSIGIDLGTSYSCIAVWRNNGVEIIPNDQGNRVTPSYVAFTDTERLIGDAAINQLAKNPHNTIFDAKRLIGRRFSDQSVQQDIRFWPFKVVPNHKDKPVIAVNYKGQEKHFSPQEISSMVLSKLKEIAETYLGHDHEVNNAVITVPAYFNNSQRQATKDAGKIAGFNVMRIINEPTAAAIAYGLDKKMWREGEKNVLVFDLGGGTFDVSLVTVDEGMFKVKATLGDTHLGGVDFDNNLVNRLVELFHRKYKKDLKISENSKALGRLRSACEKAKRLLSSSSQTVIELDSLCGGIDLHFTVTRAFFEEINKDLFKKCMETVEKCLVEVKISKSQVHEFVLVGGSTRIPKIQQLLKEMFRVNGEVKEPCKSINPDEAVAYGAAVQAAILNTEGDKKIEDLLLLDVMPFSLGVETKGGVMSVLIPKNTMIPTKKENVFAIASDNQDSVSIKVYEGEHAKTKDNFLLGKFELSAAGCSLVVPRKVPNINVCFDVDVNGILEVTAEDETQGLKKKITITNIEGRLSPEEMRRMMRDAEQYKVEDEEVKKKVKAKNLFENYVYEMRERVKKLEKVVEESIEWLDRNQLAEIDEFEFKKQELENSMKFL*