AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0371520

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0371520 MtrunA17_Chr3g0118331 93.357 572 38 0 1 572 1 572 0.0 1099
Msa0371520 MtrunA17_Chr3g0118321 84.276 566 88 1 1 565 1 566 0.0 1003
Msa0371520 MtrunA17_Chr8g0382691 50.893 560 257 6 17 569 26 574 0.0 577
Msa0371520 MtrunA17_Chr3g0118351 72.464 345 71 2 251 572 1 344 3.18e-180 511
Msa0371520 MtrunA17_Chr3g0118341 82.051 195 34 1 1 194 1 195 7.83e-117 345
Msa0371520 MtrunA17_Chr5g0404361 32.332 566 327 17 1 544 58 589 3.34e-74 248
Msa0371520 MtrunA17_Chr7g0238941 31.524 571 320 16 7 540 16 552 1.84e-71 239
Msa0371520 MtrunA17_Chr5g0437681 31.023 577 333 20 1 544 1 545 1.01e-70 237
Msa0371520 MtrunA17_Chr3g0114211 31.346 587 331 22 2 554 12 560 2.71e-70 236
Msa0371520 MtrunA17_Chr5g0429511 32.206 562 331 16 4 545 6 537 1.81e-69 234
Msa0371520 MtrunA17_Chr7g0237491 31.041 567 336 14 7 542 14 556 2.24e-69 234
Msa0371520 MtrunA17_Chr5g0436461 32.136 557 329 15 6 544 7 532 2.73e-69 233
Msa0371520 MtrunA17_Chr7g0237441 31.173 571 332 17 4 540 11 554 6.25e-69 233
Msa0371520 MtrunA17_Chr5g0404341 31.107 569 333 18 1 545 12 545 7.07e-69 233
Msa0371520 MtrunA17_Chr7g0238351 31.699 571 335 17 2 540 8 555 2.76e-68 231
Msa0371520 MtrunA17_Chr4g0031901 32.793 555 295 25 25 540 44 559 3.57e-67 228
Msa0371520 MtrunA17_Chr2g0278811 32.007 578 331 22 12 544 25 585 4.85e-67 228
Msa0371520 MtrunA17_Chr5g0431581 31.964 560 326 21 9 541 4 535 4.97e-67 227
Msa0371520 MtrunA17_Chr4g0005921 30.824 558 335 17 7 544 9 535 1.60e-66 226
Msa0371520 MtrunA17_Chr3g0104061 32.468 539 321 15 22 544 23 534 6.35e-66 224
Msa0371520 MtrunA17_Chr7g0238981 31.294 572 326 17 21 555 43 584 8.83e-64 219
Msa0371520 MtrunA17_Chr8g0346581 29.749 558 312 21 25 544 34 549 6.45e-58 203
Msa0371520 MtrunA17_Chr7g0240991 28.141 597 351 23 7 562 3 562 6.67e-54 192
Msa0371520 MtrunA17_Chr8g0374271 28.905 557 330 19 25 565 31 537 1.99e-53 190
Msa0371520 MtrunA17_Chr4g0008521 28.187 557 333 19 24 544 25 550 8.41e-53 189
Msa0371520 MtrunA17_Chr7g0240971 27.568 584 337 24 7 544 5 548 5.53e-52 187
Msa0371520 MtrunA17_Chr5g0402831 29.084 557 320 18 25 562 31 531 2.54e-49 179
Msa0371520 MtrunA17_Chr3g0121151 27.022 581 357 19 7 567 49 582 2.71e-49 180
Msa0371520 MtrunA17_Chr3g0118931 77.320 97 22 0 476 572 10 106 6.05e-49 165
Msa0371520 MtrunA17_Chr3g0121161 27.022 581 357 19 7 567 49 582 1.35e-48 178
Msa0371520 MtrunA17_Chr4g0056511 28.007 557 345 17 27 562 29 550 8.75e-48 176
Msa0371520 MtrunA17_Chr3g0121171 27.022 581 357 19 7 567 584 1117 1.18e-47 179
Msa0371520 MtrunA17_Chr3g0121171 26.850 581 358 19 7 567 1159 1692 1.24e-46 176
Msa0371520 MtrunA17_Chr3g0121171 27.224 562 343 18 26 567 27 542 1.43e-46 176
Msa0371520 MtrunA17_Chr3g0121171 26.367 512 312 17 76 567 1792 2258 3.18e-41 160
Msa0371520 MtrunA17_Chr8g0374261 27.757 544 311 21 48 567 52 537 2.35e-47 173
Msa0371520 MtrunA17_Chr4g0043251 26.072 583 363 20 7 567 7 543 2.40e-47 174
Msa0371520 MtrunA17_Chr4g0024861 27.857 560 327 17 25 562 27 531 4.49e-46 170
Msa0371520 MtrunA17_Chr3g0079321 27.223 551 337 16 37 562 41 552 5.97e-46 171
Msa0371520 MtrunA17_Chr3g0143671 25.561 579 362 17 6 565 9 537 2.19e-44 165
Msa0371520 MtrunA17_Chr4g0075071 26.949 590 348 20 2 565 6 538 3.94e-44 164
Msa0371520 MtrunA17_Chr4g0043261 26.937 568 333 20 26 567 26 537 2.52e-43 162
Msa0371520 MtrunA17_Chr4g0038671 26.585 568 338 17 19 562 21 533 2.63e-43 162
Msa0371520 MtrunA17_Chr7g0234061 27.634 579 354 23 19 573 23 560 2.97e-43 163
Msa0371520 MtrunA17_Chr2g0322441 27.611 565 322 20 25 562 30 534 7.94e-43 161
Msa0371520 MtrunA17_Chr1g0157341 25.680 588 355 21 7 566 5 538 3.06e-41 156
Msa0371520 MtrunA17_Chr3g0133861 33.438 320 183 11 249 544 5 318 2.71e-35 135
Msa0371520 MtrunA17_Chr4g0024641 26.044 503 301 15 80 562 3 454 3.75e-32 132
Msa0371520 MtrunA17_Chr1g0197301 26.586 331 185 9 234 539 5 302 2.11e-25 107
Msa0371520 MtrunA17_Chr3g0133871 36.364 143 87 4 26 166 33 173 3.35e-22 95.5
Msa0371520 MtrunA17_Chr5g0436431 37.589 141 84 2 385 524 91 228 1.10e-19 88.2
Msa0371520 MtrunA17_Chr1g0197311 26.984 189 102 5 43 199 42 226 1.32e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0371520 AT5G21105.1 65.523 554 190 1 22 574 35 588 0.0 790
Msa0371520 AT5G21105.3 66.071 504 170 1 22 524 35 538 0.0 718
Msa0371520 AT5G21100.1 61.111 558 209 5 17 570 16 569 0.0 715
Msa0371520 AT4G39830.1 49.481 578 263 10 7 566 16 582 0.0 577
Msa0371520 AT5G21105.2 64.341 387 137 1 189 574 11 397 0.0 536
Msa0371520 AT4G39830.2 49.899 495 223 8 87 566 3 487 4.45e-170 492
Msa0371520 AT4G39830.3 49.798 494 223 8 88 566 2 485 3.54e-169 489
Msa0371520 AT4G39830.4 47.677 495 221 9 87 566 3 474 2.29e-156 456
Msa0371520 AT5G03260.1 32.620 561 324 18 7 544 6 535 1.94e-71 239
Msa0371520 AT5G05390.1 30.225 579 333 19 1 544 1 543 2.61e-70 236
Msa0371520 AT5G09360.1 31.524 571 329 19 1 544 12 547 2.83e-67 229
Msa0371520 AT5G58910.2 31.130 575 322 21 8 544 7 545 4.15e-67 228
Msa0371520 AT5G58910.3 31.130 575 321 22 8 544 7 544 9.58e-66 224
Msa0371520 AT2G29130.1 32.105 570 329 18 1 540 6 547 8.60e-65 222
Msa0371520 AT2G30210.1 31.130 575 310 22 14 544 16 548 2.54e-64 221
Msa0371520 AT5G48100.1 30.496 564 326 18 14 544 11 541 3.40e-64 220
Msa0371520 AT2G40370.1 29.392 609 348 21 1 559 1 577 1.59e-63 219
Msa0371520 AT3G09220.1 30.195 563 333 19 12 544 13 545 1.81e-63 218
Msa0371520 AT5G01050.1 29.877 569 330 19 10 544 13 546 1.93e-63 219
Msa0371520 AT5G07130.1 31.250 576 335 19 1 544 1 547 6.70e-63 217
Msa0371520 AT5G01040.1 29.123 570 331 17 10 544 13 544 6.00e-62 214
Msa0371520 AT1G18140.1 29.897 582 332 21 20 559 24 571 1.17e-60 211
Msa0371520 AT5G60020.1 30.172 580 334 21 1 540 3 551 1.64e-59 208
Msa0371520 AT2G38080.1 30.851 564 331 21 8 544 5 536 3.61e-59 206
Msa0371520 AT2G46570.1 28.700 554 329 20 22 544 29 547 3.97e-57 201
Msa0371520 AT5G01190.1 30.000 540 332 15 24 544 24 536 1.74e-56 199
Msa0371520 AT5G58910.1 30.224 536 301 20 40 544 8 501 1.82e-56 198
Msa0371520 AT5G60020.3 30.314 541 308 19 40 540 8 519 8.43e-56 197
Msa0371520 AT5G01190.2 30.636 519 314 15 45 544 31 522 5.06e-54 192
Msa0371520 AT5G60020.2 29.610 564 326 21 1 524 3 535 2.77e-52 187
Msa0371520 AT1G55570.1 28.826 562 325 21 26 562 30 541 3.79e-50 182
Msa0371520 AT4G12420.1 26.610 590 373 18 1 567 1 553 5.30e-50 182
Msa0371520 AT4G12420.2 26.610 590 373 18 1 567 1 553 5.30e-50 182
Msa0371520 AT1G75790.1 27.098 572 343 19 17 562 19 542 8.58e-50 181
Msa0371520 AT4G22010.1 28.277 534 310 17 25 540 26 504 3.47e-48 176
Msa0371520 AT5G66920.1 26.975 519 317 14 25 532 37 504 1.36e-47 175
Msa0371520 AT1G21860.1 26.460 582 351 18 5 565 9 534 1.77e-46 171
Msa0371520 AT1G21850.1 26.678 581 352 19 4 562 3 531 2.26e-46 171
Msa0371520 AT3G13390.1 28.470 562 327 22 26 562 29 540 1.78e-45 169
Msa0371520 AT5G07130.2 30.165 484 283 16 91 544 4 462 2.17e-45 167
Msa0371520 AT5G07130.3 30.165 484 283 16 91 544 4 462 2.17e-45 167
Msa0371520 AT5G51480.1 27.556 577 356 23 16 567 17 556 3.42e-45 169
Msa0371520 AT4G25240.2 27.041 588 370 19 2 567 6 556 1.88e-44 167
Msa0371520 AT4G25240.1 27.041 588 370 19 2 567 6 556 1.88e-44 167
Msa0371520 AT4G37160.1 25.269 558 348 17 27 566 33 539 2.62e-44 166
Msa0371520 AT5G48450.2 25.945 582 367 17 9 567 8 548 1.20e-43 164
Msa0371520 AT5G48450.1 25.945 582 367 17 9 567 8 548 1.42e-43 164
Msa0371520 AT2G46570.2 27.992 493 290 19 83 544 4 462 2.71e-43 161
Msa0371520 AT3G09220.2 28.992 476 279 18 99 544 2 448 7.03e-43 160
Msa0371520 AT2G23630.2 27.158 556 331 20 27 562 37 538 7.62e-43 161
Msa0371520 AT4G28090.1 27.863 585 339 21 9 565 9 538 8.96e-43 161
Msa0371520 AT2G23630.1 27.158 556 331 20 27 562 32 533 9.26e-43 161
Msa0371520 AT1G76160.1 25.256 586 358 19 5 565 4 534 2.05e-41 157
Msa0371520 AT1G41830.1 24.408 549 344 15 7 539 11 504 1.27e-37 146
Msa0371520 AT3G13400.2 25.719 556 349 17 26 562 28 538 1.11e-35 141
Msa0371520 AT3G13400.1 25.719 556 349 17 26 562 28 538 1.11e-35 141
Msa0371520 AT4G38420.1 24.382 566 351 20 25 565 30 543 3.65e-34 137
Msa0371520 AT1G55560.1 24.865 555 349 20 29 562 30 537 1.95e-33 134
Msa0371520 AT4G37160.2 25.268 467 286 14 27 480 33 449 2.67e-33 132
Msa0371520 AT4G38420.3 24.381 525 320 20 9 508 9 481 1.88e-26 113
Msa0371520 AT4G38420.2 24.313 473 293 16 25 480 30 454 1.85e-25 110

Find 157 sgRNAs with CRISPR-Local

Find 414 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTGAGGGTGTTCATAAAAT+TGG 0.125745 3_1:+69694149 Msa0371520:CDS
AAATCGGTAATTTCACTAAA+TGG 0.163317 3_1:+69693646 Msa0371520:CDS
AAAACACTCTTAGGAGATTA+AGG 0.220574 3_1:-69694267 None:intergenic
TTGGACTGCATTAAGGTTTA+AGG 0.221108 3_1:+69694052 Msa0371520:CDS
CTCAGTTGTGGGTGTTGTTT+AGG 0.244247 3_1:-69694220 None:intergenic
TGTCTGTGGTGTTCCCATTC+TGG 0.244260 3_1:-69693577 None:intergenic
GCCTTCATGAATAATATATA+GGG 0.245236 3_1:+69694410 Msa0371520:three_prime_UTR
TATTATAGTTAAGGATTGTT+AGG 0.255819 3_1:-69693458 None:intergenic
TTTAAGTTATCATCACATTA+TGG 0.289067 3_1:+69694311 Msa0371520:three_prime_UTR
CTTATGGTTGGACTGCATTA+AGG 0.292432 3_1:+69694045 Msa0371520:CDS
GCTCCTAAGTAAGGTGTTAT+TGG 0.293518 3_1:-69693696 None:intergenic
GTGATTGGTGGTGGTAATAT+AGG 0.293720 3_1:-69693501 None:intergenic
TATCATCACATTATGGCCTT+TGG 0.294342 3_1:+69694318 Msa0371520:three_prime_UTR
ACTGCAGTTATATTTCCTTA+TGG 0.308341 3_1:+69694029 Msa0371520:CDS
CGCCTTCATGAATAATATAT+AGG 0.309688 3_1:+69694409 Msa0371520:three_prime_UTR
TGGCGCTACTTCGAGAATCT+TGG 0.314451 3_1:-69692609 None:intergenic
AGGCAGACAACCCTGGTGTT+TGG 0.318817 3_1:+69694072 Msa0371520:CDS
CGATTGAGAGCCAGTAGTTT+TGG 0.320504 3_1:-69693401 None:intergenic
GTTGTTGTACTTGGATTAAC+TGG 0.324579 3_1:-69693801 None:intergenic
GGCAGACAACCCTGGTGTTT+GGG 0.333727 3_1:+69694073 Msa0371520:CDS
CCGTTACCCGTTGTTGTACT+TGG 0.339838 3_1:-69693810 None:intergenic
CAGGGTTTGTATTATAGTTA+AGG 0.342158 3_1:-69693467 None:intergenic
GTTCACCAACCCATCTCATT+GGG 0.342539 3_1:-69690124 None:intergenic
CTGAGGGTGTTCATAAAATT+GGG 0.343862 3_1:+69694150 Msa0371520:CDS
TTTGTTTGGTGTATATGGTT+AGG 0.348547 3_1:+69688520 Msa0371520:CDS
ATCATCACATTATGGCCTTT+GGG 0.352012 3_1:+69694319 Msa0371520:three_prime_UTR
AATGGCTCGCTTTGGTTGTT+TGG 0.353112 3_1:-69690017 None:intergenic
TTGTTTGGTGTATATGGTTA+GGG 0.363068 3_1:+69688521 Msa0371520:CDS
CACCACCAATCACTCCCTTA+TGG 0.366354 3_1:+69693511 Msa0371520:CDS
CATTGAACCACATTTGCATC+TGG 0.368806 3_1:+69694109 Msa0371520:CDS
GGAATCAATGGTCAGTTTCC+TGG 0.370438 3_1:+69688637 Msa0371520:CDS
TTAAATATGTCGAAATCAAA+TGG 0.374923 3_1:-69693774 None:intergenic
TGATTGGTGGTGGTAATATA+GGG 0.386257 3_1:-69693500 None:intergenic
TCCTTCTGTAGAGAGCTTGT+TGG 0.390891 3_1:-69688707 None:intergenic
GGCGCTACTTCGAGAATCTT+GGG 0.392401 3_1:-69692608 None:intergenic
AGGTGTTATTGGCAATGTTA+AGG 0.403860 3_1:-69693685 None:intergenic
TATTTGATTGCTCCTAAGTA+AGG 0.405813 3_1:-69693705 None:intergenic
TATTTCTATCATGGACACTA+TGG 0.409360 3_1:+69689948 Msa0371520:CDS
CTTTGAAATTGCATTGAGGC+AGG 0.417474 3_1:-69692568 None:intergenic
CTCAACACACAAAACAAAAT+CGG 0.420483 3_1:+69693630 Msa0371520:CDS
AATCGGTAATTTCACTAAAT+GGG 0.420700 3_1:+69693647 Msa0371520:CDS
TTTGTAGATTGGAACTCCTT+GGG 0.426712 3_1:+69689641 Msa0371520:intron
CTCTTCAGCCCCAATGAGAT+GGG 0.429001 3_1:+69690115 Msa0371520:CDS
AAATCAAATGGGAATCTATC+TGG 0.430172 3_1:-69693762 None:intergenic
CTGTAATGAAAAGTTTCTCC+TGG 0.432582 3_1:-69689702 None:intergenic
CATAATGAAATGGCTCGCTT+TGG 0.432881 3_1:-69690025 None:intergenic
AACTCACCATCATAATGAAA+TGG 0.432896 3_1:-69690035 None:intergenic
GGTTCACCAACCCATCTCAT+TGG 0.433465 3_1:-69690125 None:intergenic
ATTTGACACGTGCACCTTTG+AGG 0.440703 3_1:+69694003 Msa0371520:CDS
AGCGAGCCATTTCATTATGA+TGG 0.443509 3_1:+69690029 Msa0371520:CDS
CAGAGAGCAGCAGGGTTGTA+TGG 0.444015 3_1:+69689975 Msa0371520:CDS
GATCTTGGTCCGTGTGTAGA+AGG 0.444511 3_1:-69693374 None:intergenic
CCAACTTCAGCTCTAATAGT+TGG 0.449801 3_1:-69688661 None:intergenic
ATTACAGATTCATTGTTGAC+AGG 0.449902 3_1:+69689718 Msa0371520:CDS
CAGTTATATTTCCTTATGGT+TGG 0.450961 3_1:+69694033 Msa0371520:CDS
TCTCTTCAGCCCCAATGAGA+TGG 0.452079 3_1:+69690114 Msa0371520:CDS
AAACAAATCATTTCCAGAAT+GGG 0.453424 3_1:+69693564 Msa0371520:CDS
ATTATAGTTAAGGATTGTTA+GGG 0.461154 3_1:-69693457 None:intergenic
ATTGGAACTCCTTGGGCTGA+TGG 0.463869 3_1:+69689648 Msa0371520:CDS
GGTGTTGTTTAGGAACATCT+TGG 0.466856 3_1:-69694210 None:intergenic
TTAAGGATTGTTAGGGCTTG+TGG 0.473400 3_1:-69693450 None:intergenic
CCTGGTACATATTTCTATCA+TGG 0.478578 3_1:+69689939 Msa0371520:CDS
AAAACAAATCATTTCCAGAA+TGG 0.478795 3_1:+69693563 Msa0371520:CDS
CAAAACTACTGGCTCTCAAT+CGG 0.478813 3_1:+69693402 Msa0371520:CDS
GTTAATCCAAGTACAACAAC+GGG 0.479161 3_1:+69693804 Msa0371520:CDS
TATGGCATGCAGAGAGCAGC+AGG 0.482439 3_1:+69689966 Msa0371520:CDS
CTTAATGCAGTCCAACCATA+AGG 0.485250 3_1:-69694044 None:intergenic
ACCACATTTGCATCTGGGAA+TGG 0.487721 3_1:+69694115 Msa0371520:CDS
TAAATATGTCGAAATCAAAT+GGG 0.488708 3_1:-69693773 None:intergenic
TCTATGCTATCAACCGTGAA+TGG 0.489752 3_1:-69693324 None:intergenic
CGCTCGAAATCGTTCCATAA+GGG 0.490554 3_1:-69693525 None:intergenic
ACAACATGCTCTATGCAATC+TGG 0.490800 3_1:-69688610 None:intergenic
CAACTTCAGCTCTAATAGTT+GGG 0.494195 3_1:-69688660 None:intergenic
AATATAGGGAAAGTTGAGGC+AGG 0.496705 3_1:-69693486 None:intergenic
ACTCTTAGGAGATTAAGGTT+TGG 0.497652 3_1:-69694262 None:intergenic
GCGCTCGAAATCGTTCCATA+AGG 0.499345 3_1:-69693526 None:intergenic
AGCTTAGCTAGTCTCAGTTG+TGG 0.500207 3_1:-69694232 None:intergenic
TCGTTCCATAAGGGAGTGAT+TGG 0.500888 3_1:-69693516 None:intergenic
AAACTACGTGCACCCATTCA+CGG 0.502338 3_1:+69693311 Msa0371520:CDS
CAATGAAATGCCCAAACACC+AGG 0.503898 3_1:-69694083 None:intergenic
GTCCTTAGCTTCTCTCAACT+TGG 0.508173 3_1:+69692667 Msa0371520:CDS
TTGCCAATAACACCTTACTT+AGG 0.510406 3_1:+69693693 Msa0371520:CDS
GCTTAGCTAGTCTCAGTTGT+GGG 0.510640 3_1:-69694231 None:intergenic
ATGAAGGCGAGTTGGACAAA+TGG 0.513487 3_1:-69694395 None:intergenic
ACTTGCAATCCTAATTCTGT+AGG 0.513702 3_1:-69692639 None:intergenic
CCCCTATATATTATTCATGA+AGG 0.517133 3_1:-69694411 None:intergenic
CTGTAGAGAGCTTGTTGGTG+AGG 0.522573 3_1:-69688702 None:intergenic
TGTTCACGAAATTAGCTGCT+AGG 0.529978 3_1:-69692541 None:intergenic
CAGAAGGAACTGTTATTCAC+TGG 0.532868 3_1:+69688722 Msa0371520:CDS
AAGATCCCAACCAAAACTAC+TGG 0.534040 3_1:+69693391 Msa0371520:CDS
CCACATTTGCATCTGGGAAT+GGG 0.538253 3_1:+69694116 Msa0371520:CDS
ATTGAACCACATTTGCATCT+GGG 0.538898 3_1:+69694110 Msa0371520:CDS
CCCATTCCCAGATGCAAATG+TGG 0.540042 3_1:-69694116 None:intergenic
TTCCATAAGGGAGTGATTGG+TGG 0.540746 3_1:-69693513 None:intergenic
TATTATTCATGAAGGCGAGT+TGG 0.544595 3_1:-69694403 None:intergenic
AGCTTGCTCATCAATGGAAG+AGG 0.544734 3_1:+69692503 Msa0371520:CDS
GGCCAAGTTGAGAGAAGCTA+AGG 0.545213 3_1:-69692669 None:intergenic
TCTCAGTGTGCTATAAATCC+AGG 0.546219 3_1:+69689684 Msa0371520:CDS
GTTCATCCATGGCATTTGCA+TGG 0.550858 3_1:+69693912 Msa0371520:CDS
AGGTTTAAGGCAGACAACCC+TGG 0.556431 3_1:+69694065 Msa0371520:CDS
GGAACTGTTATTCACTGGCA+TGG 0.556886 3_1:+69688727 Msa0371520:CDS
TCAGCTCTAATAGTTGGGCC+AGG 0.557489 3_1:-69688655 None:intergenic
GTTCACGAAATTAGCTGCTA+GGG 0.560510 3_1:-69692540 None:intergenic
TTACAGATTCATTGTTGACA+GGG 0.563984 3_1:+69689719 Msa0371520:CDS
ATCACATTATGGCCTTTGGG+TGG 0.566948 3_1:+69694322 Msa0371520:three_prime_UTR
TCAGCCCCAATGAGATGGGT+TGG 0.567659 3_1:+69690119 Msa0371520:CDS
AATGGGAATCTATCTGGTGG+TGG 0.568086 3_1:-69693756 None:intergenic
CCATGATAGAAATATGTACC+AGG 0.570980 3_1:-69689939 None:intergenic
CTATGCTATCAACCGTGAAT+GGG 0.572088 3_1:-69693323 None:intergenic
CCAACTATTAGAGCTGAAGT+TGG 0.572309 3_1:+69688661 Msa0371520:CDS
CTGCCTCAATGCAATTTCAA+AGG 0.573833 3_1:+69692569 Msa0371520:CDS
CATAAGGGAGTGATTGGTGG+TGG 0.576952 3_1:-69693510 None:intergenic
CTTGTTGTGGTGGAAGCAGA+TGG 0.578406 3_1:+69693288 Msa0371520:CDS
CATGTTGTGATGGGAATCAA+TGG 0.578474 3_1:+69688625 Msa0371520:CDS
TTACACGTTTCACTTAAATG+AGG 0.579316 3_1:+69693836 Msa0371520:CDS
TTGCATAGAGCATGTTGTGA+TGG 0.579841 3_1:+69688615 Msa0371520:CDS
GAAACATTACAAGTTTGATG+TGG 0.579860 3_1:+69688570 Msa0371520:CDS
CATCTGCTTCCACCACAACA+AGG 0.580093 3_1:-69693287 None:intergenic
ATCTCATTGGGGCTGAAGAG+AGG 0.581211 3_1:-69690112 None:intergenic
CCAAGTACAACAACGGGTAA+CGG 0.582426 3_1:+69693810 Msa0371520:CDS
ATCTGCTCCTCAGTGATCTG+TGG 0.584818 3_1:+69690060 Msa0371520:CDS
GAGATGGGTTGGTGAACCAC+AGG 0.584866 3_1:+69690130 Msa0371520:CDS
ATATAGGGAAAGTTGAGGCA+GGG 0.586056 3_1:-69693485 None:intergenic
ATAACTGCAGTGTTCCTCAA+AGG 0.587942 3_1:-69694017 None:intergenic
TCACTGGCATGGAATCAGAC+AGG 0.589797 3_1:+69688738 Msa0371520:CDS
CACAAGTTCACAAGAACAAG+AGG 0.595059 3_1:+69690085 Msa0371520:CDS
TGCATAGAGCATGTTGTGAT+GGG 0.595383 3_1:+69688616 Msa0371520:CDS
CCACCTTTGAAATTGCATTG+AGG 0.597277 3_1:-69692572 None:intergenic
ACCAACAAGCTCTCTACAGA+AGG 0.601317 3_1:+69688706 Msa0371520:CDS
TTTGAAATTGCATTGAGGCA+GGG 0.606053 3_1:-69692567 None:intergenic
CCTCAATGCAATTTCAAAGG+TGG 0.612230 3_1:+69692572 Msa0371520:CDS
TCATGTCCATGCAAATGCCA+TGG 0.613062 3_1:-69693918 None:intergenic
CCTACACATGCTCTTACTTG+TGG 0.613192 3_1:+69694179 Msa0371520:CDS
GAATCACACCCTTGTTGTGG+TGG 0.615258 3_1:+69693278 Msa0371520:intron
TTCACCAACCCATCTCATTG+GGG 0.616416 3_1:-69690123 None:intergenic
AGTTCACAAGAACAAGAGGT+TGG 0.621180 3_1:+69690089 Msa0371520:CDS
CCTTCATGAATAATATATAG+GGG 0.621956 3_1:+69694411 Msa0371520:three_prime_UTR
ATACTAGTGAAGTTCATCCA+TGG 0.627356 3_1:+69693901 Msa0371520:CDS
CTACTCAGTCCTTCTACACA+CGG 0.628943 3_1:+69693365 Msa0371520:CDS
AGTTAATCCAAGTACAACAA+CGG 0.640190 3_1:+69693803 Msa0371520:CDS
GATAGCATAGACATCTACTC+AGG 0.642343 3_1:+69693336 Msa0371520:CDS
GCTTGCTCATCAATGGAAGA+GGG 0.643075 3_1:+69692504 Msa0371520:CDS
GCAGCAGTTCCATCAGCCCA+AGG 0.643166 3_1:-69689657 None:intergenic
ATCTGCTTCCACCACAACAA+GGG 0.647563 3_1:-69693286 None:intergenic
GTAGAATCACACCCTTGTTG+TGG 0.648768 3_1:+69693275 Msa0371520:intron
CGTGTGTAGAAGGACTGAGT+AGG 0.651575 3_1:-69693364 None:intergenic
TCAAATGGGAATCTATCTGG+TGG 0.659562 3_1:-69693759 None:intergenic
AACAAAGCAAAACCACCCAA+AGG 0.672305 3_1:-69694334 None:intergenic
TGGTAATATAGGGAAAGTTG+AGG 0.684103 3_1:-69693490 None:intergenic
CCACAAGTAAGAGCATGTGT+AGG 0.697143 3_1:-69694179 None:intergenic
AATGAAATGCCCAAACACCA+GGG 0.701200 3_1:-69694082 None:intergenic
GAAATTGCATTGAGGCAGGG+TGG 0.703546 3_1:-69692564 None:intergenic
ATGGCATGCAGAGAGCAGCA+GGG 0.712589 3_1:+69689967 Msa0371520:CDS
GTTGGTGAGGTCAATGACAA+CGG 0.719426 3_1:-69688689 None:intergenic
TGTTGAGGAGGTAAATTGTG+CGG 0.723525 3_1:-69693614 None:intergenic
GGTGAAGGGAAATTTCAACC+AGG 0.727102 3_1:+69693960 Msa0371520:CDS
TTGTGTGCCACAGATCACTG+AGG 0.796939 3_1:-69690067 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAACAACAAAAAATGTATA+AGG - chr3_1:69689571-69689590 None:intergenic 15.0%
!!! TACATTTTTTGTTGTTTTTT+TGG + chr3_1:69689573-69689592 Msa0371520:intron 15.0%
!!! AATAATAATGTTTTGTAGAT+TGG + chr3_1:69689630-69689649 Msa0371520:intron 15.0%
!!! ACCAAAAACATTATTTTATA+GGG - chr3_1:69690880-69690899 None:intergenic 15.0%
!!! TACCAAAAACATTATTTTAT+AGG - chr3_1:69690881-69690900 None:intergenic 15.0%
!! TACTATATATTGAGTATATA+TGG + chr3_1:69690956-69690975 Msa0371520:intron 15.0%
!!! TCATTGTTAATAAGTTATTT+TGG + chr3_1:69691485-69691504 Msa0371520:intron 15.0%
!! AGTATTATAACAATCTAAAT+TGG - chr3_1:69691683-69691702 None:intergenic 15.0%
!! TTTATATTATTAATCTGAAC+TGG + chr3_1:69692197-69692216 Msa0371520:intron 15.0%
!!! TATCCTTTAACTTTTAATAA+AGG + chr3_1:69692245-69692264 Msa0371520:intron 15.0%
!! TTTCCTTTATTAAAAGTTAA+AGG - chr3_1:69692251-69692270 None:intergenic 15.0%
!! ATTGTGTATAAAAAAATGTT+TGG + chr3_1:69692908-69692927 Msa0371520:intron 15.0%
!! CATTACAAAATAATCTTAAA+CGG - chr3_1:69692976-69692995 None:intergenic 15.0%
!!! GTTTAAGATTATTTTGTAAT+GGG + chr3_1:69692975-69692994 Msa0371520:intron 15.0%
!!! TTTAAGATTATTTTGTAATG+GGG + chr3_1:69692976-69692995 Msa0371520:intron 15.0%
!! ACAAATAAAGTATATATTTG+AGG - chr3_1:69693039-69693058 None:intergenic 15.0%
!! TGTAAATATTCATAAAGATG+AGG + chr3_1:69689071-69689090 Msa0371520:intron 20.0%
!! GTAAATATTCATAAAGATGA+GGG + chr3_1:69689072-69689091 Msa0371520:intron 20.0%
!! AGGAAATAAAAATGATATCT+AGG + chr3_1:69689095-69689114 Msa0371520:intron 20.0%
!! GGAAATAAAAATGATATCTA+GGG + chr3_1:69689096-69689115 Msa0371520:intron 20.0%
!!! GTTTGTAAAAAGTTTTCTTA+TGG + chr3_1:69689398-69689417 Msa0371520:intron 20.0%
!!! CTTTGAACTTTTTTAGAAAT+TGG - chr3_1:69689502-69689521 None:intergenic 20.0%
!!! TTTTTTGTTGTTTTTTTGGT+AGG + chr3_1:69689577-69689596 Msa0371520:intron 20.0%
!! ATATATATGATATTAACGTG+TGG + chr3_1:69689895-69689914 Msa0371520:intron 20.0%
!! TATATATGATATTAACGTGT+GGG + chr3_1:69689896-69689915 Msa0371520:intron 20.0%
!!! GACTTTTTGTAGTTTTAATT+TGG - chr3_1:69690421-69690440 None:intergenic 20.0%
!! AGTATTATAACAAGATAGAT+TGG - chr3_1:69690590-69690609 None:intergenic 20.0%
!!! TCCCTATAAAATAATGTTTT+TGG + chr3_1:69690876-69690895 Msa0371520:intron 20.0%
!!! ATGTTTTTGGTACTTTTATT+AGG + chr3_1:69690889-69690908 Msa0371520:intron 20.0%
!!! TGTTTTTGGTACTTTTATTA+GGG + chr3_1:69690890-69690909 Msa0371520:intron 20.0%
!! TAACTTATTAACAATGAGTA+TGG - chr3_1:69691482-69691501 None:intergenic 20.0%
!! ACAATGCATTATTATATGTA+GGG + chr3_1:69691790-69691809 Msa0371520:intron 20.0%
!!! TTAATCGCATACTTTTTTTT+TGG - chr3_1:69691907-69691926 None:intergenic 20.0%
!! GAAAAAGAAAATATTACAAG+TGG - chr3_1:69692090-69692109 None:intergenic 20.0%
!! AAAAGTTAAAGGATAAACTA+AGG - chr3_1:69692240-69692259 None:intergenic 20.0%
!! CCATGATTAAATTAATCTTA+TGG - chr3_1:69692380-69692399 None:intergenic 20.0%
!! CCATAAGATTAATTTAATCA+TGG + chr3_1:69692377-69692396 Msa0371520:intron 20.0%
!! GATTAATTTAATCATGGATA+TGG + chr3_1:69692383-69692402 Msa0371520:intron 20.0%
!! AAAAAAGTCATCATAATGTA+TGG - chr3_1:69692481-69692500 None:intergenic 20.0%
!! AATGCAAATATATATCTAGT+AGG - chr3_1:69692730-69692749 None:intergenic 20.0%
!!! CGTTTAAGATTATTTTGTAA+TGG + chr3_1:69692974-69692993 Msa0371520:intron 20.0%
!! ATCATTCATTCATCAATTAA+CGG + chr3_1:69693230-69693249 Msa0371520:intron 20.0%
!! ATTATAGTTAAGGATTGTTA+GGG - chr3_1:69693460-69693479 None:intergenic 20.0%
!! TATTATAGTTAAGGATTGTT+AGG - chr3_1:69693461-69693480 None:intergenic 20.0%
!! TAAATATGTCGAAATCAAAT+GGG - chr3_1:69693776-69693795 None:intergenic 20.0%
!! TTAAATATGTCGAAATCAAA+TGG - chr3_1:69693777-69693796 None:intergenic 20.0%
!!! TTTAAGTTATCATCACATTA+TGG + chr3_1:69694311-69694330 Msa0371520:three_prime_UTR 20.0%
!!! ATAATTTTGAATAACTCATC+TGG - chr3_1:69694510-69694529 None:intergenic 20.0%
!!! TGTTAAAAGCTGTTTTTGTT+TGG + chr3_1:69688506-69688525 Msa0371520:CDS 25.0%
! TTTAGAAATTGGTCATAGAT+TGG - chr3_1:69689491-69689510 None:intergenic 25.0%
!!! AGTTTTAATTTGGATCGATT+TGG - chr3_1:69690411-69690430 None:intergenic 25.0%
! AAATTACAAAACGTTTAGAG+AGG - chr3_1:69690838-69690857 None:intergenic 25.0%
!!! ATGTTTTAGATGGTATCAAT+TGG + chr3_1:69691085-69691104 Msa0371520:intron 25.0%
!!! ATAAGTTATTTTGGTCCATA+TGG + chr3_1:69691494-69691513 Msa0371520:intron 25.0%
!! GATTTAAAGCAAAGCATTAT+TGG - chr3_1:69691661-69691680 None:intergenic 25.0%
! CAATTAACATTGTACCAAAA+AGG + chr3_1:69691741-69691760 Msa0371520:intron 25.0%
! GACAATGCATTATTATATGT+AGG + chr3_1:69691789-69691808 Msa0371520:intron 25.0%
! CAATGCATTATTATATGTAG+GGG + chr3_1:69691791-69691810 Msa0371520:intron 25.0%
!!! AATGTGTTATTTTTTTGGTC+AGG - chr3_1:69691881-69691900 None:intergenic 25.0%
!!! GGTACAATGTGTTATTTTTT+TGG - chr3_1:69691886-69691905 None:intergenic 25.0%
!!! AATGAGATAGTGATTTTTAG+AGG - chr3_1:69692004-69692023 None:intergenic 25.0%
!!! ACTCACTTTAAGATTCAATT+TGG - chr3_1:69692040-69692059 None:intergenic 25.0%
! AAAGAAAATATTACAAGTGG+AGG - chr3_1:69692087-69692106 None:intergenic 25.0%
!! GAAAAAAGACAATGTTGTTT+AGG - chr3_1:69692411-69692430 None:intergenic 25.0%
! GGAAAAAAATGTCATTCATA+AGG - chr3_1:69692451-69692470 None:intergenic 25.0%
!!! CTAATTCTGTAGGTTTTTTT+TGG - chr3_1:69692632-69692651 None:intergenic 25.0%
! CAAAAAAAACCTACAGAATT+AGG + chr3_1:69692630-69692649 Msa0371520:CDS 25.0%
! AGATCAAAAACTTACTGAAA+TGG - chr3_1:69692693-69692712 None:intergenic 25.0%
!!! CATTTTTTTATACACAATCG+AGG - chr3_1:69692906-69692925 None:intergenic 25.0%
! TTCATCGATAAAATCAGTTT+AGG - chr3_1:69693182-69693201 None:intergenic 25.0%
! TCTACATGACACAAAAATTA+TGG - chr3_1:69693260-69693279 None:intergenic 25.0%
! AAAACAAATCATTTCCAGAA+TGG + chr3_1:69693563-69693582 Msa0371520:CDS 25.0%
! AAACAAATCATTTCCAGAAT+GGG + chr3_1:69693564-69693583 Msa0371520:CDS 25.0%
! AAATCGGTAATTTCACTAAA+TGG + chr3_1:69693646-69693665 Msa0371520:CDS 25.0%
! AATCGGTAATTTCACTAAAT+GGG + chr3_1:69693647-69693666 Msa0371520:CDS 25.0%
! AAAGAAAGAAAAACACTCTT+AGG - chr3_1:69694279-69694298 None:intergenic 25.0%
!!! ATTGTTTCTCTTTTATCATC+AGG + chr3_1:69694372-69694391 Msa0371520:three_prime_UTR 25.0%
! GCCTTCATGAATAATATATA+GGG + chr3_1:69694410-69694429 Msa0371520:three_prime_UTR 25.0%
! CCTTCATGAATAATATATAG+GGG + chr3_1:69694411-69694430 Msa0371520:three_prime_UTR 25.0%
!!! CTGTTTTTGTTTGGTGTATA+TGG + chr3_1:69688515-69688534 Msa0371520:CDS 30.0%
!! TTTGTTTGGTGTATATGGTT+AGG + chr3_1:69688520-69688539 Msa0371520:CDS 30.0%
!! TTGTTTGGTGTATATGGTTA+GGG + chr3_1:69688521-69688540 Msa0371520:CDS 30.0%
GAAACATTACAAGTTTGATG+TGG + chr3_1:69688570-69688589 Msa0371520:CDS 30.0%
TTGCTCATAATAGTAACAGA+CGG + chr3_1:69688854-69688873 Msa0371520:intron 30.0%
! TCATTGTATTTGATGGTTGA+CGG + chr3_1:69688914-69688933 Msa0371520:intron 30.0%
AATATTCATAAAGATGAGGG+AGG + chr3_1:69689075-69689094 Msa0371520:intron 30.0%
! AAGATGGACCAATTTTTGTT+TGG + chr3_1:69689238-69689257 Msa0371520:intron 30.0%
!! AGATGGACCAATTTTTGTTT+GGG + chr3_1:69689239-69689258 Msa0371520:intron 30.0%
! TTTTTATCACTTTGTGTGCA+TGG - chr3_1:69689282-69689301 None:intergenic 30.0%
ATTACAGATTCATTGTTGAC+AGG + chr3_1:69689718-69689737 Msa0371520:CDS 30.0%
TTACAGATTCATTGTTGACA+GGG + chr3_1:69689719-69689738 Msa0371520:CDS 30.0%
! ATCACTTATTTGAGATCAAG+TGG + chr3_1:69689781-69689800 Msa0371520:intron 30.0%
AACAAAAGAAAAACCATTGC+TGG - chr3_1:69689822-69689841 None:intergenic 30.0%
! TATTTCTATCATGGACACTA+TGG + chr3_1:69689948-69689967 Msa0371520:CDS 30.0%
AACTCACCATCATAATGAAA+TGG - chr3_1:69690038-69690057 None:intergenic 30.0%
! AAAAGTTGAAAGTATACCTG+TGG - chr3_1:69690149-69690168 None:intergenic 30.0%
AAAACTCCCAAACAAAGATT+GGG - chr3_1:69690482-69690501 None:intergenic 30.0%
GAAGCAAGAATCATAAAGAA+TGG + chr3_1:69690525-69690544 Msa0371520:intron 30.0%
TAAAGAATGGAGAACTTTAG+AGG + chr3_1:69690538-69690557 Msa0371520:intron 30.0%
AAAGAATGGAGAACTTTAGA+GGG + chr3_1:69690539-69690558 Msa0371520:intron 30.0%
ATGATCAATAAAAACGTGCA+AGG - chr3_1:69690765-69690784 None:intergenic 30.0%
TATATATGGTCTCAATAGAC+AGG + chr3_1:69690970-69690989 Msa0371520:intron 30.0%
ATATATGGTCTCAATAGACA+GGG + chr3_1:69690971-69690990 Msa0371520:intron 30.0%
ACATATCACTAAGGAAACTA+GGG - chr3_1:69691069-69691088 None:intergenic 30.0%
AACATATCACTAAGGAAACT+AGG - chr3_1:69691070-69691089 None:intergenic 30.0%
! CCATCTAAAACATATCACTA+AGG - chr3_1:69691078-69691097 None:intergenic 30.0%
!! CCTTAGTGATATGTTTTAGA+TGG + chr3_1:69691075-69691094 Msa0371520:intron 30.0%
GTAGAAGGAAAATCAGTTAT+GGG - chr3_1:69691136-69691155 None:intergenic 30.0%
TGTAGAAGGAAAATCAGTTA+TGG - chr3_1:69691137-69691156 None:intergenic 30.0%
GAGTAATATGGATATGTAGA+AGG - chr3_1:69691151-69691170 None:intergenic 30.0%
GTGCTAAGGTTGAATAATAT+GGG - chr3_1:69691274-69691293 None:intergenic 30.0%
! AAGGTAATTATGAAGGGTAT+GGG - chr3_1:69691322-69691341 None:intergenic 30.0%
! GTTTCCATAAATGTATTGGT+TGG - chr3_1:69691348-69691367 None:intergenic 30.0%
TTGGGTTTCCATAAATGTAT+TGG - chr3_1:69691352-69691371 None:intergenic 30.0%
TGAAAGAAGTTGAATAGGAA+GGG - chr3_1:69691414-69691433 None:intergenic 30.0%
TTGAAAGAAGTTGAATAGGA+AGG - chr3_1:69691415-69691434 None:intergenic 30.0%
ATTAACAATGAGTATGGAGT+GGG - chr3_1:69691476-69691495 None:intergenic 30.0%
TATTAACAATGAGTATGGAG+TGG - chr3_1:69691477-69691496 None:intergenic 30.0%
! GATTGTTGTTGAAAACCATA+TGG - chr3_1:69691512-69691531 None:intergenic 30.0%
! TTTTCAACAACAATCTCATC+TGG + chr3_1:69691517-69691536 Msa0371520:intron 30.0%
ATCTCATCTGGATTATTCAA+AGG + chr3_1:69691529-69691548 Msa0371520:intron 30.0%
ACCTTATAAGGTGAATAAGT+GGG - chr3_1:69691838-69691857 None:intergenic 30.0%
TACCTTATAAGGTGAATAAG+TGG - chr3_1:69691839-69691858 None:intergenic 30.0%
TGGCTAGAATTTACCTTATA+AGG - chr3_1:69691850-69691869 None:intergenic 30.0%
ATTCAATTTGGAAGCTTAGA+GGG - chr3_1:69692028-69692047 None:intergenic 30.0%
AAGTCATCATAATGTATGGT+GGG - chr3_1:69692477-69692496 None:intergenic 30.0%
AAAGTCATCATAATGTATGG+TGG - chr3_1:69692478-69692497 None:intergenic 30.0%
!! AAGATTATTTTGTAATGGGG+AGG + chr3_1:69692979-69692998 Msa0371520:intron 30.0%
CAGGGTTTGTATTATAGTTA+AGG - chr3_1:69693470-69693489 None:intergenic 30.0%
CTCAACACACAAAACAAAAT+CGG + chr3_1:69693630-69693649 Msa0371520:CDS 30.0%
TATTTGATTGCTCCTAAGTA+AGG - chr3_1:69693708-69693727 None:intergenic 30.0%
AAATCAAATGGGAATCTATC+TGG - chr3_1:69693765-69693784 None:intergenic 30.0%
AGTTAATCCAAGTACAACAA+CGG + chr3_1:69693803-69693822 Msa0371520:CDS 30.0%
TTACACGTTTCACTTAAATG+AGG + chr3_1:69693836-69693855 Msa0371520:CDS 30.0%
! ATTTGCATGGACATGATTTT+TGG + chr3_1:69693925-69693944 Msa0371520:CDS 30.0%
! TTTGCATGGACATGATTTTT+GGG + chr3_1:69693926-69693945 Msa0371520:CDS 30.0%
ACTGCAGTTATATTTCCTTA+TGG + chr3_1:69694029-69694048 Msa0371520:CDS 30.0%
CAGTTATATTTCCTTATGGT+TGG + chr3_1:69694033-69694052 Msa0371520:CDS 30.0%
AAAACACTCTTAGGAGATTA+AGG - chr3_1:69694270-69694289 None:intergenic 30.0%
CGCCTTCATGAATAATATAT+AGG + chr3_1:69694409-69694428 Msa0371520:three_prime_UTR 30.0%
CCCCTATATATTATTCATGA+AGG - chr3_1:69694414-69694433 None:intergenic 30.0%
! CAACTTCAGCTCTAATAGTT+GGG - chr3_1:69688663-69688682 None:intergenic 35.0%
GTGCTCTTCATTGTATTTGA+TGG + chr3_1:69688907-69688926 Msa0371520:intron 35.0%
TGTTCTGCCCAAACAAAAAT+TGG - chr3_1:69689249-69689268 None:intergenic 35.0%
GCACACAAAGTGATAAAAAG+AGG + chr3_1:69689283-69689302 Msa0371520:intron 35.0%
ATGGTTAAGTGAGTAGAGAT+TGG + chr3_1:69689417-69689436 Msa0371520:intron 35.0%
TGGTTAAGTGAGTAGAGATT+GGG + chr3_1:69689418-69689437 Msa0371520:intron 35.0%
! TTTTGTAGATTGGAACTCCT+TGG + chr3_1:69689640-69689659 Msa0371520:intron 35.0%
TTTGTAGATTGGAACTCCTT+GGG + chr3_1:69689641-69689660 Msa0371520:intron 35.0%
CTGTAATGAAAAGTTTCTCC+TGG - chr3_1:69689705-69689724 None:intergenic 35.0%
CCATGATAGAAATATGTACC+AGG - chr3_1:69689942-69689961 None:intergenic 35.0%
! CCTGGTACATATTTCTATCA+TGG + chr3_1:69689939-69689958 Msa0371520:CDS 35.0%
!! CAAAGATTGGGTTTGCTATA+AGG - chr3_1:69690470-69690489 None:intergenic 35.0%
TAGCAAACCCAATCTTTGTT+TGG + chr3_1:69690472-69690491 Msa0371520:intron 35.0%
! AGCAAACCCAATCTTTGTTT+GGG + chr3_1:69690473-69690492 Msa0371520:intron 35.0%
CAAAACTCCCAAACAAAGAT+TGG - chr3_1:69690483-69690502 None:intergenic 35.0%
!! ATCTTTGTTTGGGAGTTTTG+AGG + chr3_1:69690483-69690502 Msa0371520:intron 35.0%
!! TCTTTGTTTGGGAGTTTTGA+GGG + chr3_1:69690484-69690503 Msa0371520:intron 35.0%
AGGGTAGAGCTTGTAAAAAA+AGG + chr3_1:69690503-69690522 Msa0371520:intron 35.0%
GTGTTCAAGATTATGTCACA+TGG + chr3_1:69690912-69690931 Msa0371520:intron 35.0%
TCTAAGAGCAAAAGGAGAAA+AGG - chr3_1:69691045-69691064 None:intergenic 35.0%
AAGGAAAATCAGTTATGGGA+GGG - chr3_1:69691132-69691151 None:intergenic 35.0%
ATTGTGAGGATCGAGTAATA+TGG - chr3_1:69691163-69691182 None:intergenic 35.0%
GGTGCTAAGGTTGAATAATA+TGG - chr3_1:69691275-69691294 None:intergenic 35.0%
GAAGGTAATTATGAAGGGTA+TGG - chr3_1:69691323-69691342 None:intergenic 35.0%
TGGAGGAAGGTAATTATGAA+GGG - chr3_1:69691328-69691347 None:intergenic 35.0%
TTGGAGGAAGGTAATTATGA+AGG - chr3_1:69691329-69691348 None:intergenic 35.0%
!! TAAATGTATTGGTTGGAGGA+AGG - chr3_1:69691341-69691360 None:intergenic 35.0%
TCCTCCAACCAATACATTTA+TGG + chr3_1:69691341-69691360 Msa0371520:intron 35.0%
!! TCCATAAATGTATTGGTTGG+AGG - chr3_1:69691345-69691364 None:intergenic 35.0%
! GAATAGGAAGGGTATAGTAA+AGG - chr3_1:69691403-69691422 None:intergenic 35.0%
! TGGGTTGAAAGAAGTTGAAT+AGG - chr3_1:69691419-69691438 None:intergenic 35.0%
TCTTTCAACCCATACAATCA+TGG + chr3_1:69691427-69691446 Msa0371520:intron 35.0%
!! TATTCAAAGGCACTCTCATA+TGG + chr3_1:69691542-69691561 Msa0371520:intron 35.0%
!! ATTCAAAGGCACTCTCATAT+GGG + chr3_1:69691543-69691562 Msa0371520:intron 35.0%
TAAAGCGGATATAGGTATGA+GGG - chr3_1:69691585-69691604 None:intergenic 35.0%
ATAAAGCGGATATAGGTATG+AGG - chr3_1:69691586-69691605 None:intergenic 35.0%
TTAGAAAGCGAAGCATAAAG+CGG - chr3_1:69691600-69691619 None:intergenic 35.0%
!! TCGCTTTCTAAAAGTGTTTC+TGG + chr3_1:69691609-69691628 Msa0371520:intron 35.0%
!! TAAAAGTGTTTCTGGCTTTG+AGG + chr3_1:69691617-69691636 Msa0371520:intron 35.0%
CCTTATAAGGTGAATAAGTG+GGG - chr3_1:69691837-69691856 None:intergenic 35.0%
GATTCAATTTGGAAGCTTAG+AGG - chr3_1:69692029-69692048 None:intergenic 35.0%
GAAAATATTACAAGTGGAGG+TGG - chr3_1:69692084-69692103 None:intergenic 35.0%
!! ATCATAATGTATGGTGGGTT+AGG - chr3_1:69692472-69692491 None:intergenic 35.0%
!!! TTTTAGAGCTTGCTCATCAA+TGG + chr3_1:69692497-69692516 Msa0371520:intron 35.0%
! TTTGAAATTGCATTGAGGCA+GGG - chr3_1:69692570-69692589 None:intergenic 35.0%
ACTTGCAATCCTAATTCTGT+AGG - chr3_1:69692642-69692661 None:intergenic 35.0%
ATCTCTCTTTCTTGTGTAGT+AGG + chr3_1:69692758-69692777 Msa0371520:intron 35.0%
TCTTGTGTAGTAGGTATGAA+AGG + chr3_1:69692767-69692786 Msa0371520:intron 35.0%
GCAAGGAAAACATGACTAAT+AGG + chr3_1:69692836-69692855 Msa0371520:intron 35.0%
TTGGTAGATGTGCAAATCTA+TGG + chr3_1:69692927-69692946 Msa0371520:intron 35.0%
TGGTAATATAGGGAAAGTTG+AGG - chr3_1:69693493-69693512 None:intergenic 35.0%
!! TGATTGGTGGTGGTAATATA+GGG - chr3_1:69693503-69693522 None:intergenic 35.0%
!!! TTTTGTTTTGTGTGTTGAGG+AGG - chr3_1:69693629-69693648 None:intergenic 35.0%
!!! CGATTTTGTTTTGTGTGTTG+AGG - chr3_1:69693632-69693651 None:intergenic 35.0%
!! AGGTGTTATTGGCAATGTTA+AGG - chr3_1:69693688-69693707 None:intergenic 35.0%
TTGCCAATAACACCTTACTT+AGG + chr3_1:69693693-69693712 Msa0371520:CDS 35.0%
GTTGTTGTACTTGGATTAAC+TGG - chr3_1:69693804-69693823 None:intergenic 35.0%
GTTAATCCAAGTACAACAAC+GGG + chr3_1:69693804-69693823 Msa0371520:CDS 35.0%
ATACTAGTGAAGTTCATCCA+TGG + chr3_1:69693901-69693920 Msa0371520:CDS 35.0%
!!! TGGACATGATTTTTGGGTTT+TGG + chr3_1:69693932-69693951 Msa0371520:CDS 35.0%
!!! GGACATGATTTTTGGGTTTT+GGG + chr3_1:69693933-69693952 Msa0371520:CDS 35.0%
!!! GATTTTTGGGTTTTGGGATA+TGG + chr3_1:69693939-69693958 Msa0371520:CDS 35.0%
! AAACTTTTCTGATGAACACC+TGG - chr3_1:69693981-69694000 None:intergenic 35.0%
TTGGACTGCATTAAGGTTTA+AGG + chr3_1:69694052-69694071 Msa0371520:CDS 35.0%
ATTGAACCACATTTGCATCT+GGG + chr3_1:69694110-69694129 Msa0371520:CDS 35.0%
!!! AATGGGTGTTATTTTTGCTG+AGG + chr3_1:69694133-69694152 Msa0371520:CDS 35.0%
!!! ATGGGTGTTATTTTTGCTGA+GGG + chr3_1:69694134-69694153 Msa0371520:CDS 35.0%
!! CTGAGGGTGTTCATAAAATT+GGG + chr3_1:69694150-69694169 Msa0371520:CDS 35.0%
ACTCTTAGGAGATTAAGGTT+TGG - chr3_1:69694265-69694284 None:intergenic 35.0%
TATCATCACATTATGGCCTT+TGG + chr3_1:69694318-69694337 Msa0371520:three_prime_UTR 35.0%
ATCATCACATTATGGCCTTT+GGG + chr3_1:69694319-69694338 Msa0371520:three_prime_UTR 35.0%
TATTATTCATGAAGGCGAGT+TGG - chr3_1:69694406-69694425 None:intergenic 35.0%
! TAGCTTTTGCTCAGAGACTT+TGG - chr3_1:69688463-69688482 None:intergenic 40.0%
ACAACATGCTCTATGCAATC+TGG - chr3_1:69688613-69688632 None:intergenic 40.0%
TTGCATAGAGCATGTTGTGA+TGG + chr3_1:69688615-69688634 Msa0371520:CDS 40.0%
TGCATAGAGCATGTTGTGAT+GGG + chr3_1:69688616-69688635 Msa0371520:CDS 40.0%
! CATGTTGTGATGGGAATCAA+TGG + chr3_1:69688625-69688644 Msa0371520:CDS 40.0%
! CCAACTTCAGCTCTAATAGT+TGG - chr3_1:69688664-69688683 None:intergenic 40.0%
CCAACTATTAGAGCTGAAGT+TGG + chr3_1:69688661-69688680 Msa0371520:CDS 40.0%
CAGAAGGAACTGTTATTCAC+TGG + chr3_1:69688722-69688741 Msa0371520:CDS 40.0%
! TATTTGATGGTTGACGGACA+AGG + chr3_1:69688920-69688939 Msa0371520:intron 40.0%
AGGAGAGGTAAAGACCATAT+GGG + chr3_1:69689157-69689176 Msa0371520:intron 40.0%
TTTACTCTCTCTCACCCATA+TGG - chr3_1:69689174-69689193 None:intergenic 40.0%
ATATGGGTGAGAGAGAGTAA+AGG + chr3_1:69689173-69689192 Msa0371520:intron 40.0%
TATGGGTGAGAGAGAGTAAA+GGG + chr3_1:69689174-69689193 Msa0371520:intron 40.0%
TGAGAGAGAGTAAAGGGTTA+AGG + chr3_1:69689180-69689199 Msa0371520:intron 40.0%
GAGAGAGAGTAAAGGGTTAA+GGG + chr3_1:69689181-69689200 Msa0371520:intron 40.0%
AGTAAAGGGTTAAGGGAGAA+AGG + chr3_1:69689188-69689207 Msa0371520:intron 40.0%
TCTCAGTGTGCTATAAATCC+AGG + chr3_1:69689684-69689703 Msa0371520:CDS 40.0%
CGTGTGGGTGTTTAATCATA+TGG + chr3_1:69689911-69689930 Msa0371520:intron 40.0%
TTTAATCATATGGTGCAGCC+TGG + chr3_1:69689921-69689940 Msa0371520:intron 40.0%
CATAATGAAATGGCTCGCTT+TGG - chr3_1:69690028-69690047 None:intergenic 40.0%
AGCGAGCCATTTCATTATGA+TGG + chr3_1:69690029-69690048 Msa0371520:CDS 40.0%
CACAAGTTCACAAGAACAAG+AGG + chr3_1:69690085-69690104 Msa0371520:CDS 40.0%
AGTTCACAAGAACAAGAGGT+TGG + chr3_1:69690089-69690108 Msa0371520:CDS 40.0%
! AATGGAGAACTTTAGAGGGT+TGG + chr3_1:69690543-69690562 Msa0371520:intron 40.0%
! ATGGAGAACTTTAGAGGGTT+GGG + chr3_1:69690544-69690563 Msa0371520:intron 40.0%
!! ACTAGGGTTCTAAGAGCAAA+AGG - chr3_1:69691053-69691072 None:intergenic 40.0%
GAAGGAAAATCAGTTATGGG+AGG - chr3_1:69691133-69691152 None:intergenic 40.0%
GAATGGAGCTATAATACTGG+TGG - chr3_1:69691190-69691209 None:intergenic 40.0%
ATATGGTGTGTGTGTGGATT+GGG - chr3_1:69691213-69691232 None:intergenic 40.0%
AATATGGTGTGTGTGTGGAT+TGG - chr3_1:69691214-69691233 None:intergenic 40.0%
GGAGGAGATTAAGTGGAATA+TGG - chr3_1:69691230-69691249 None:intergenic 40.0%
TGAATAATATGGGTGAGAGG+TGG - chr3_1:69691264-69691283 None:intergenic 40.0%
GGTTGAATAATATGGGTGAG+AGG - chr3_1:69691267-69691286 None:intergenic 40.0%
GTAGAGCTGAAATGGTGTTT+GGG - chr3_1:69691370-69691389 None:intergenic 40.0%
GTATAGTAAAGGTTGGGTGA+TGG - chr3_1:69691392-69691411 None:intergenic 40.0%
! GGAAGGGTATAGTAAAGGTT+GGG - chr3_1:69691398-69691417 None:intergenic 40.0%
! AGGAAGGGTATAGTAAAGGT+TGG - chr3_1:69691399-69691418 None:intergenic 40.0%
GACTGTAGCCATGATTGTAT+GGG - chr3_1:69691438-69691457 None:intergenic 40.0%
AGACTGTAGCCATGATTGTA+TGG - chr3_1:69691439-69691458 None:intergenic 40.0%
AAAGCGGATATAGGTATGAG+GGG - chr3_1:69691584-69691603 None:intergenic 40.0%
GCATTATTATATGTAGGGGC+CGG + chr3_1:69691795-69691814 Msa0371520:intron 40.0%
CATTATTATATGTAGGGGCC+GGG + chr3_1:69691796-69691815 Msa0371520:intron 40.0%
CCCCACTTATTCACCTTATA+AGG + chr3_1:69691834-69691853 Msa0371520:intron 40.0%
!! TTTTTGGTCAGGTAGCTTAG+TGG - chr3_1:69691870-69691889 None:intergenic 40.0%
GTTCACGAAATTAGCTGCTA+GGG - chr3_1:69692543-69692562 None:intergenic 40.0%
TGTTCACGAAATTAGCTGCT+AGG - chr3_1:69692544-69692563 None:intergenic 40.0%
!! CTTTGAAATTGCATTGAGGC+AGG - chr3_1:69692571-69692590 None:intergenic 40.0%
CTGCCTCAATGCAATTTCAA+AGG + chr3_1:69692569-69692588 Msa0371520:CDS 40.0%
!! CCACCTTTGAAATTGCATTG+AGG - chr3_1:69692575-69692594 None:intergenic 40.0%
CCTCAATGCAATTTCAAAGG+TGG + chr3_1:69692572-69692591 Msa0371520:CDS 40.0%
ATTATTCCATTCGCATCGCA+AGG + chr3_1:69692819-69692838 Msa0371520:intron 40.0%
!! TATTTTGTAATGGGGAGGCT+TGG + chr3_1:69692984-69693003 Msa0371520:intron 40.0%
CTATGCTATCAACCGTGAAT+GGG - chr3_1:69693326-69693345 None:intergenic 40.0%
TCTATGCTATCAACCGTGAA+TGG - chr3_1:69693327-69693346 None:intergenic 40.0%
GATAGCATAGACATCTACTC+AGG + chr3_1:69693336-69693355 Msa0371520:CDS 40.0%
!! CAAAACTACTGGCTCTCAAT+CGG + chr3_1:69693402-69693421 Msa0371520:CDS 40.0%
TTAAGGATTGTTAGGGCTTG+TGG - chr3_1:69693453-69693472 None:intergenic 40.0%
ATATAGGGAAAGTTGAGGCA+GGG - chr3_1:69693488-69693507 None:intergenic 40.0%
AATATAGGGAAAGTTGAGGC+AGG - chr3_1:69693489-69693508 None:intergenic 40.0%
!! GTGATTGGTGGTGGTAATAT+AGG - chr3_1:69693504-69693523 None:intergenic 40.0%
TGTTGAGGAGGTAAATTGTG+CGG - chr3_1:69693617-69693636 None:intergenic 40.0%
! GCTCCTAAGTAAGGTGTTAT+TGG - chr3_1:69693699-69693718 None:intergenic 40.0%
TCAAATGGGAATCTATCTGG+TGG - chr3_1:69693762-69693781 None:intergenic 40.0%
ATAACTGCAGTGTTCCTCAA+AGG - chr3_1:69694020-69694039 None:intergenic 40.0%
CTTAATGCAGTCCAACCATA+AGG - chr3_1:69694047-69694066 None:intergenic 40.0%
CTTATGGTTGGACTGCATTA+AGG + chr3_1:69694045-69694064 Msa0371520:CDS 40.0%
AATGAAATGCCCAAACACCA+GGG - chr3_1:69694085-69694104 None:intergenic 40.0%
CATTGAACCACATTTGCATC+TGG + chr3_1:69694109-69694128 Msa0371520:CDS 40.0%
!! GCTGAGGGTGTTCATAAAAT+TGG + chr3_1:69694149-69694168 Msa0371520:CDS 40.0%
!! GGTGTTGTTTAGGAACATCT+TGG - chr3_1:69694213-69694232 None:intergenic 40.0%
AACAAAGCAAAACCACCCAA+AGG - chr3_1:69694337-69694356 None:intergenic 40.0%
GGAATCAATGGTCAGTTTCC+TGG + chr3_1:69688637-69688656 Msa0371520:CDS 45.0%
! GTTGGTGAGGTCAATGACAA+CGG - chr3_1:69688692-69688711 None:intergenic 45.0%
ACCAACAAGCTCTCTACAGA+AGG + chr3_1:69688706-69688725 Msa0371520:CDS 45.0%
TCCTTCTGTAGAGAGCTTGT+TGG - chr3_1:69688710-69688729 None:intergenic 45.0%
GGAACTGTTATTCACTGGCA+TGG + chr3_1:69688727-69688746 Msa0371520:CDS 45.0%
GAGAGAGATCGAAGATGAGT+AGG + chr3_1:69689118-69689137 Msa0371520:intron 45.0%
GAGGAGAGGTAAAGACCATA+TGG + chr3_1:69689156-69689175 Msa0371520:intron 45.0%
AGAGAGACAGGGAGTAAAGA+TGG + chr3_1:69689222-69689241 Msa0371520:intron 45.0%
TCAAGTGGCATATATCTCCC+AGG + chr3_1:69689796-69689815 Msa0371520:intron 45.0%
! AGAAAAACCATTGCTGGCCT+GGG - chr3_1:69689816-69689835 None:intergenic 45.0%
AAGAAAAACCATTGCTGGCC+TGG - chr3_1:69689817-69689836 None:intergenic 45.0%
AATGGCTCGCTTTGGTTGTT+TGG - chr3_1:69690020-69690039 None:intergenic 45.0%
TTCACCAACCCATCTCATTG+GGG - chr3_1:69690126-69690145 None:intergenic 45.0%
GTTCACCAACCCATCTCATT+GGG - chr3_1:69690127-69690146 None:intergenic 45.0%
! CAAGGCTCTCTTTGAGAGTT+GGG - chr3_1:69690747-69690766 None:intergenic 45.0%
!! TATGGGAGGGTTTTGTGATC+AGG - chr3_1:69691119-69691138 None:intergenic 45.0%
ATACTGGTGGTTGCATTGTG+AGG - chr3_1:69691177-69691196 None:intergenic 45.0%
GGGGAATGGAGCTATAATAC+TGG - chr3_1:69691193-69691212 None:intergenic 45.0%
! TATGGTGTGTGTGTGGATTG+GGG - chr3_1:69691212-69691231 None:intergenic 45.0%
AGTGGAATATGGTGTGTGTG+TGG - chr3_1:69691219-69691238 None:intergenic 45.0%
TGCACATGGAGGAGATTAAG+TGG - chr3_1:69691237-69691256 None:intergenic 45.0%
TGGAGCTGAAATAGGTGCTA+AGG - chr3_1:69691288-69691307 None:intergenic 45.0%
!! GATGATGGTGGAGCTGAAAT+AGG - chr3_1:69691296-69691315 None:intergenic 45.0%
! GAAGGGTATGGGTTTGATGA+TGG - chr3_1:69691311-69691330 None:intergenic 45.0%
GGTAGAGCTGAAATGGTGTT+TGG - chr3_1:69691371-69691390 None:intergenic 45.0%
GCGAAGCATAAAGCGGATAT+AGG - chr3_1:69691593-69691612 None:intergenic 45.0%
!! TGGCTTTGAGGCTATTGCTT+AGG + chr3_1:69691629-69691648 Msa0371520:intron 45.0%
TACCAACTAGCTATGCTCAC+GGG - chr3_1:69691768-69691787 None:intergenic 45.0%
CTACCAACTAGCTATGCTCA+CGG - chr3_1:69691769-69691788 None:intergenic 45.0%
ATTACAAGTGGAGGTGGTTG+TGG - chr3_1:69692078-69692097 None:intergenic 45.0%
!! TTAATCTGAACTGGTGCTGC+TGG + chr3_1:69692206-69692225 Msa0371520:intron 45.0%
! AGCTTGCTCATCAATGGAAG+AGG + chr3_1:69692503-69692522 Msa0371520:CDS 45.0%
GCTTGCTCATCAATGGAAGA+GGG + chr3_1:69692504-69692523 Msa0371520:CDS 45.0%
GTCCTTAGCTTCTCTCAACT+TGG + chr3_1:69692667-69692686 Msa0371520:CDS 45.0%
! TGTTTTCCTTGCGATGCGAA+TGG - chr3_1:69692828-69692847 None:intergenic 45.0%
!! TGCAAATCTATGGTGTCGCA+TGG + chr3_1:69692937-69692956 Msa0371520:intron 45.0%
! TCTTAAACGGCTAGTTGAGC+TGG - chr3_1:69692963-69692982 None:intergenic 45.0%
GTAGAATCACACCCTTGTTG+TGG + chr3_1:69693275-69693294 Msa0371520:intron 45.0%
ATCTGCTTCCACCACAACAA+GGG - chr3_1:69693289-69693308 None:intergenic 45.0%
AAACTACGTGCACCCATTCA+CGG + chr3_1:69693311-69693330 Msa0371520:CDS 45.0%
CTACTCAGTCCTTCTACACA+CGG + chr3_1:69693365-69693384 Msa0371520:CDS 45.0%
TTCCATAAGGGAGTGATTGG+TGG - chr3_1:69693516-69693535 None:intergenic 45.0%
TCGTTCCATAAGGGAGTGAT+TGG - chr3_1:69693519-69693538 None:intergenic 45.0%
CGCTCGAAATCGTTCCATAA+GGG - chr3_1:69693528-69693547 None:intergenic 45.0%
!!! TCTGCGATTTTTGGTGTCTG+TGG - chr3_1:69693594-69693613 None:intergenic 45.0%
! ATTGTGCGGTCTGCGATTTT+TGG - chr3_1:69693603-69693622 None:intergenic 45.0%
AATGGGAATCTATCTGGTGG+TGG - chr3_1:69693759-69693778 None:intergenic 45.0%
CCAAGTACAACAACGGGTAA+CGG + chr3_1:69693810-69693829 Msa0371520:CDS 45.0%
GTTCATCCATGGCATTTGCA+TGG + chr3_1:69693912-69693931 Msa0371520:CDS 45.0%
TCATGTCCATGCAAATGCCA+TGG - chr3_1:69693921-69693940 None:intergenic 45.0%
!!! TGGGTTTTGGGATATGGTGA+AGG + chr3_1:69693945-69693964 Msa0371520:CDS 45.0%
!!! GGGTTTTGGGATATGGTGAA+GGG + chr3_1:69693946-69693965 Msa0371520:CDS 45.0%
GGTGAAGGGAAATTTCAACC+AGG + chr3_1:69693960-69693979 Msa0371520:CDS 45.0%
ATTTGACACGTGCACCTTTG+AGG + chr3_1:69694003-69694022 Msa0371520:CDS 45.0%
CAATGAAATGCCCAAACACC+AGG - chr3_1:69694086-69694105 None:intergenic 45.0%
ACCACATTTGCATCTGGGAA+TGG + chr3_1:69694115-69694134 Msa0371520:CDS 45.0%
CCACATTTGCATCTGGGAAT+GGG + chr3_1:69694116-69694135 Msa0371520:CDS 45.0%
! CCACAAGTAAGAGCATGTGT+AGG - chr3_1:69694182-69694201 None:intergenic 45.0%
CCTACACATGCTCTTACTTG+TGG + chr3_1:69694179-69694198 Msa0371520:CDS 45.0%
!! CTCAGTTGTGGGTGTTGTTT+AGG - chr3_1:69694223-69694242 None:intergenic 45.0%
! GCTTAGCTAGTCTCAGTTGT+GGG - chr3_1:69694234-69694253 None:intergenic 45.0%
! AGCTTAGCTAGTCTCAGTTG+TGG - chr3_1:69694235-69694254 None:intergenic 45.0%
ATCACATTATGGCCTTTGGG+TGG + chr3_1:69694322-69694341 Msa0371520:three_prime_UTR 45.0%
! ATGAAGGCGAGTTGGACAAA+TGG - chr3_1:69694398-69694417 None:intergenic 45.0%
!! TTTATAATAATATAATAACT+AGG + chr3_1:69689866-69689885 Msa0371520:intron 5.0%
!! TTATAATAATATAATAACTA+GGG + chr3_1:69689867-69689886 Msa0371520:intron 5.0%
! TCAGCTCTAATAGTTGGGCC+AGG - chr3_1:69688658-69688677 None:intergenic 50.0%
!! CTGTAGAGAGCTTGTTGGTG+AGG - chr3_1:69688705-69688724 None:intergenic 50.0%
TCACTGGCATGGAATCAGAC+AGG + chr3_1:69688738-69688757 Msa0371520:CDS 50.0%
GATGAGTAGGCAAGCAAGAG+AGG + chr3_1:69689131-69689150 Msa0371520:intron 50.0%
TAGGCAAGCAAGAGAGGAAG+AGG + chr3_1:69689137-69689156 Msa0371520:intron 50.0%
AAGCAAGAGAGGAAGAGGAG+AGG + chr3_1:69689142-69689161 Msa0371520:intron 50.0%
! AAGGGAGAAAGGCATGAGAG+TGG + chr3_1:69689199-69689218 Msa0371520:intron 50.0%
CATGAGAGTGGAGAGAGACA+GGG + chr3_1:69689211-69689230 Msa0371520:intron 50.0%
ATTGGAACTCCTTGGGCTGA+TGG + chr3_1:69689648-69689667 Msa0371520:CDS 50.0%
TATATCTCCCAGGCCAGCAA+TGG + chr3_1:69689806-69689825 Msa0371520:intron 50.0%
ATCTGCTCCTCAGTGATCTG+TGG + chr3_1:69690060-69690079 Msa0371520:CDS 50.0%
TTGTGTGCCACAGATCACTG+AGG - chr3_1:69690070-69690089 None:intergenic 50.0%
ATCTCATTGGGGCTGAAGAG+AGG - chr3_1:69690115-69690134 None:intergenic 50.0%
TCTCTTCAGCCCCAATGAGA+TGG + chr3_1:69690114-69690133 Msa0371520:CDS 50.0%
CTCTTCAGCCCCAATGAGAT+GGG + chr3_1:69690115-69690134 Msa0371520:CDS 50.0%
GGTTCACCAACCCATCTCAT+TGG - chr3_1:69690128-69690147 None:intergenic 50.0%
GGACAATGAGACGAGGACTT+TGG - chr3_1:69690722-69690741 None:intergenic 50.0%
! GCTCTCTTTGAGAGTTGGGA+GGG - chr3_1:69690743-69690762 None:intergenic 50.0%
! GCAAGGCTCTCTTTGAGAGT+TGG - chr3_1:69690748-69690767 None:intergenic 50.0%
!! TGTGTGTGTGGATTGGGGAA+TGG - chr3_1:69691207-69691226 None:intergenic 50.0%
TGAGAGGTGGAGTATGCACA+TGG - chr3_1:69691251-69691270 None:intergenic 50.0%
!! GGGTATGGGTTTGATGATGG+TGG - chr3_1:69691308-69691327 None:intergenic 50.0%
! GGGTGATGGTAGAGCTGAAA+TGG - chr3_1:69691378-69691397 None:intergenic 50.0%
AATGAGTATGGAGTGGGTGC+AGG - chr3_1:69691470-69691489 None:intergenic 50.0%
! CTATGCTCACGGGACCTTTT+TGG - chr3_1:69691758-69691777 None:intergenic 50.0%
CGTGAGCATAGCTAGTTGGT+AGG + chr3_1:69691767-69691786 Msa0371520:intron 50.0%
! AGGTGAATAAGTGGGGTGTC+CGG - chr3_1:69691830-69691849 None:intergenic 50.0%
GAAATTGCATTGAGGCAGGG+TGG - chr3_1:69692567-69692586 None:intergenic 50.0%
GGCGCTACTTCGAGAATCTT+GGG - chr3_1:69692611-69692630 None:intergenic 50.0%
TGGCGCTACTTCGAGAATCT+TGG - chr3_1:69692612-69692631 None:intergenic 50.0%
! GGCCAAGTTGAGAGAAGCTA+AGG - chr3_1:69692672-69692691 None:intergenic 50.0%
! GAATCACACCCTTGTTGTGG+TGG + chr3_1:69693278-69693297 Msa0371520:intron 50.0%
CATCTGCTTCCACCACAACA+AGG - chr3_1:69693290-69693309 None:intergenic 50.0%
! CTTGTTGTGGTGGAAGCAGA+TGG + chr3_1:69693288-69693307 Msa0371520:CDS 50.0%
CGTGTGTAGAAGGACTGAGT+AGG - chr3_1:69693367-69693386 None:intergenic 50.0%
GATCTTGGTCCGTGTGTAGA+AGG - chr3_1:69693377-69693396 None:intergenic 50.0%
CATAAGGGAGTGATTGGTGG+TGG - chr3_1:69693513-69693532 None:intergenic 50.0%
CACCACCAATCACTCCCTTA+TGG + chr3_1:69693511-69693530 Msa0371520:CDS 50.0%
GCGCTCGAAATCGTTCCATA+AGG - chr3_1:69693529-69693548 None:intergenic 50.0%
TGTCTGTGGTGTTCCCATTC+TGG - chr3_1:69693580-69693599 None:intergenic 50.0%
CCGTTACCCGTTGTTGTACT+TGG - chr3_1:69693813-69693832 None:intergenic 50.0%
! AGGTTTAAGGCAGACAACCC+TGG + chr3_1:69694065-69694084 Msa0371520:CDS 50.0%
CCCATTCCCAGATGCAAATG+TGG - chr3_1:69694119-69694138 None:intergenic 50.0%
GCATGAGAGTGGAGAGAGAC+AGG + chr3_1:69689210-69689229 Msa0371520:intron 55.0%
TATGGCATGCAGAGAGCAGC+AGG + chr3_1:69689966-69689985 Msa0371520:CDS 55.0%
ATGGCATGCAGAGAGCAGCA+GGG + chr3_1:69689967-69689986 Msa0371520:CDS 55.0%
CAGAGAGCAGCAGGGTTGTA+TGG + chr3_1:69689975-69689994 Msa0371520:CDS 55.0%
TCAGCCCCAATGAGATGGGT+TGG + chr3_1:69690119-69690138 Msa0371520:CDS 55.0%
!! GAGATGGGTTGGTGAACCAC+AGG + chr3_1:69690130-69690149 Msa0371520:CDS 55.0%
TTGGGAGGGACAATGAGACG+AGG - chr3_1:69690729-69690748 None:intergenic 55.0%
! GGCTCTCTTTGAGAGTTGGG+AGG - chr3_1:69690744-69690763 None:intergenic 55.0%
GAGGTGGAGTATGCACATGG+AGG - chr3_1:69691248-69691267 None:intergenic 55.0%
GTCCCGTGAGCATAGCTAGT+TGG + chr3_1:69691763-69691782 Msa0371520:intron 55.0%
! GTGAATAAGTGGGGTGTCCG+GGG - chr3_1:69691828-69691847 None:intergenic 55.0%
! GGTGAATAAGTGGGGTGTCC+GGG - chr3_1:69691829-69691848 None:intergenic 55.0%
AAGTGAGTTCTCACCACCGC+TGG + chr3_1:69692052-69692071 Msa0371520:intron 55.0%
AGGCAGACAACCCTGGTGTT+TGG + chr3_1:69694072-69694091 Msa0371520:CDS 55.0%
GGCAGACAACCCTGGTGTTT+GGG + chr3_1:69694073-69694092 Msa0371520:CDS 55.0%
GCAGCAGTTCCATCAGCCCA+AGG - chr3_1:69689660-69689679 None:intergenic 60.0%
GAGTATGGAGTGGGTGCAGG+TGG - chr3_1:69691467-69691486 None:intergenic 60.0%
GTGGAGGTGGTTGTGGCCAG+CGG - chr3_1:69692071-69692090 None:intergenic 65.0%
TAGGGGCCGGGTTCGAACCC+CGG + chr3_1:69691808-69691827 Msa0371520:intron 70.0%
GGGTGTCCGGGGTTCGAACC+CGG - chr3_1:69691817-69691836 None:intergenic 70.0%
GAGGTGGTTGTGGCCAGCGG+TGG - chr3_1:69692068-69692087 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 69688402 69694545 69688402 ID=Msa0371520;Name=Msa0371520
chr3_1 mRNA 69688402 69694545 69688402 ID=Msa0371520-mRNA-1;Parent=Msa0371520;Name=Msa0371520-mRNA-1;_AED=0.25;_eAED=0.25;_QI=97|1|1|1|1|1|5|304|574
chr3_1 exon 69688402 69688759 69688402 ID=Msa0371520-mRNA-1:exon:14930;Parent=Msa0371520-mRNA-1
chr3_1 exon 69689648 69689740 69689648 ID=Msa0371520-mRNA-1:exon:14931;Parent=Msa0371520-mRNA-1
chr3_1 exon 69689939 69690151 69689939 ID=Msa0371520-mRNA-1:exon:14932;Parent=Msa0371520-mRNA-1
chr3_1 exon 69692503 69692697 69692503 ID=Msa0371520-mRNA-1:exon:14933;Parent=Msa0371520-mRNA-1
chr3_1 exon 69693279 69694545 69693279 ID=Msa0371520-mRNA-1:exon:14934;Parent=Msa0371520-mRNA-1
chr3_1 five_prime_UTR 69688402 69688498 69688402 ID=Msa0371520-mRNA-1:five_prime_utr;Parent=Msa0371520-mRNA-1
chr3_1 CDS 69688499 69688759 69688499 ID=Msa0371520-mRNA-1:cds;Parent=Msa0371520-mRNA-1
chr3_1 CDS 69689648 69689740 69689648 ID=Msa0371520-mRNA-1:cds;Parent=Msa0371520-mRNA-1
chr3_1 CDS 69689939 69690151 69689939 ID=Msa0371520-mRNA-1:cds;Parent=Msa0371520-mRNA-1
chr3_1 CDS 69692503 69692697 69692503 ID=Msa0371520-mRNA-1:cds;Parent=Msa0371520-mRNA-1
chr3_1 CDS 69693279 69694241 69693279 ID=Msa0371520-mRNA-1:cds;Parent=Msa0371520-mRNA-1
chr3_1 three_prime_UTR 69694242 69694545 69694242 ID=Msa0371520-mRNA-1:three_prime_utr;Parent=Msa0371520-mRNA-1
Gene Sequence

>Msa0371520

ATGAGTTTGTTAAAAGCTGTTTTTGTTTGGTGTATATGGTTAGGGTTATTTGAGTTTTCATTAGCAAAAGTGAAACATTACAAGTTTGATGTGGAATACATGTACAAAACGCCAGATTGCATAGAGCATGTTGTGATGGGAATCAATGGTCAGTTTCCTGGCCCAACTATTAGAGCTGAAGTTGGTGACACCGTTGTCATTGACCTCACCAACAAGCTCTCTACAGAAGGAACTGTTATTCACTGGCATGGAATCAGACAGATTGGAACTCCTTGGGCTGATGGAACTGCTGCAATCTCTCAGTGTGCTATAAATCCAGGAGAAACTTTTCATTACAGATTCATTGTTGACAGGCCTGGTACATATTTCTATCATGGACACTATGGCATGCAGAGAGCAGCAGGGTTGTATGGTTCTCTAATAGTAGATTTACCAAACAACCAAAGCGAGCCATTTCATTATGATGGTGAGTTTAATCTGCTCCTCAGTGATCTGTGGCACACAAGTTCACAAGAACAAGAGGTTGGCCTCTCTTCAGCCCCAATGAGATGGGTTGGTGAACCACAGAGCTTGCTCATCAATGGAAGAGGGCAGTTCAATTGTTCCCTAGCAGCTAATTTCGTGAACACCACCCTGCCTCAATGCAATTTCAAAGGTGGTGAAGAATGCGCACCCAAGATTCTCGAAGTAGCGCCAAAAAAAACCTACAGAATTAGGATTGCAAGTACAACGTCCTTAGCTTCTCTCAACTTGGCCATTTCAAATCACACCCTTGTTGTGGTGGAAGCAGATGGAAACTACGTGCACCCATTCACGGTTGATAGCATAGACATCTACTCAGGCGAAACCTACTCAGTCCTTCTACACACGGACCAAGATCCCAACCAAAACTACTGGCTCTCAATCGGCATTATAAGCAGAAAATCAGACACACCACAAGCCCTAACAATCCTTAACTATAATACAAACCCTGCCTCAACTTTCCCTATATTACCACCACCAATCACTCCCTTATGGAACGATTTCGAGCGCAGCAAAGCATTCACAAAACAAATCATTTCCAGAATGGGAACACCACAGACACCAAAAATCGCAGACCGCACAATTTACCTCCTCAACACACAAAACAAAATCGGTAATTTCACTAAATGGGCTATTAATAATGTTTCCTTAACATTGCCAATAACACCTTACTTAGGAGCAATCAAATATAAACTAAACAATACATTTGATAGAAATCCACCACCAGATAGATTCCCATTTGATTTCGACATATTTAAAACTCCAGTTAATCCAAGTACAACAACGGGTAACGGTGTTTACACGTTTCACTTAAATGAGGTTGTTGATGTGATACTACAAAATGCAAACATGTTAAAAGATAATACTAGTGAAGTTCATCCATGGCATTTGCATGGACATGATTTTTGGGTTTTGGGATATGGTGAAGGGAAATTTCAACCAGGTGTTCATCAGAAAAGTTTGAATTTGACACGTGCACCTTTGAGGAACACTGCAGTTATATTTCCTTATGGTTGGACTGCATTAAGGTTTAAGGCAGACAACCCTGGTGTTTGGGCATTTCATTGTCACATTGAACCACATTTGCATCTGGGAATGGGTGTTATTTTTGCTGAGGGTGTTCATAAAATTGGGAACATACCTACACATGCTCTTACTTGTGGTGCTACAGCCAAGATGTTCCTAAACAACACCCACAACTGA
Protein sequence

>Msa0371520

MSLLKAVFVWCIWLGLFEFSLAKVKHYKFDVEYMYKTPDCIEHVVMGINGQFPGPTIRAEVGDTVVIDLTNKLSTEGTVIHWHGIRQIGTPWADGTAAISQCAINPGETFHYRFIVDRPGTYFYHGHYGMQRAAGLYGSLIVDLPNNQSEPFHYDGEFNLLLSDLWHTSSQEQEVGLSSAPMRWVGEPQSLLINGRGQFNCSLAANFVNTTLPQCNFKGGEECAPKILEVAPKKTYRIRIASTTSLASLNLAISNHTLVVVEADGNYVHPFTVDSIDIYSGETYSVLLHTDQDPNQNYWLSIGIISRKSDTPQALTILNYNTNPASTFPILPPPITPLWNDFERSKAFTKQIISRMGTPQTPKIADRTIYLLNTQNKIGNFTKWAINNVSLTLPITPYLGAIKYKLNNTFDRNPPPDRFPFDFDIFKTPVNPSTTTGNGVYTFHLNEVVDVILQNANMLKDNTSEVHPWHLHGHDFWVLGYGEGKFQPGVHQKSLNLTRAPLRNTAVIFPYGWTALRFKADNPGVWAFHCHIEPHLHLGMGVIFAEGVHKIGNIPTHALTCGATAKMFLNNTHN*