Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0372080 | XP_003601481.2 | 73.938 | 353 | 29 | 5 | 1 | 290 | 1 | 353 | 4.52e-155 | 447 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0372080 | G7J835 | 73.938 | 353 | 29 | 5 | 1 | 290 | 1 | 353 | 2.16e-155 | 447 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0372080 | TF | MYB-related |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0372080 | Msa0512470 | 0.847169 | 1.371094e-59 | -8.615850e-47 |
| Msa0372080 | Msa1089000 | 0.817396 | 3.369866e-52 | -8.615850e-47 |
| Msa0372080 | Msa1418090 | 0.804920 | 1.713297e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0372080 | MtrunA17_Chr3g0120481 | 73.938 | 353 | 29 | 5 | 1 | 290 | 1 | 353 | 4.16e-159 | 447 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0372080 | AT5G03780.1 | 66.102 | 59 | 19 | 1 | 226 | 283 | 344 | 402 | 3.45e-18 | 84.3 |
| Msa0372080 | AT1G01150.3 | 55.172 | 58 | 25 | 1 | 228 | 284 | 233 | 290 | 6.49e-13 | 68.2 |
| Msa0372080 | AT4G12670.1 | 55.932 | 59 | 25 | 1 | 226 | 284 | 414 | 471 | 7.21e-13 | 68.9 |
| Msa0372080 | AT1G01150.1 | 56.140 | 57 | 24 | 1 | 228 | 283 | 233 | 289 | 9.26e-13 | 68.2 |
| Msa0372080 | AT4G12670.2 | 55.932 | 59 | 25 | 1 | 226 | 284 | 524 | 581 | 1.19e-12 | 68.6 |
Find 86 sgRNAs with CRISPR-Local
Find 289 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATCAACGGGTACGGTTTC+GGG | 0.166113 | 3_1:-70389657 | None:intergenic |
| GTGGATGAACCGAAAGTTTC+TGG | 0.188540 | 3_1:+70390008 | Msa0372080:CDS |
| ATGACTTTGTACACAGTTAT+TGG | 0.211097 | 3_1:-70393447 | None:intergenic |
| GGAATCAACGGGTACGGTTT+CGG | 0.249956 | 3_1:-70389658 | None:intergenic |
| CTTTCGTACTCTTGAAGTTC+TGG | 0.273691 | 3_1:-70390279 | None:intergenic |
| CTGTTGATCTCAAGGATAAA+TGG | 0.309546 | 3_1:+70391741 | Msa0372080:CDS |
| CCTTATCCTTATGCACTGTT+TGG | 0.310732 | 3_1:-70389920 | None:intergenic |
| GTGGTGGAGAGGAGAGGAAT+TGG | 0.313590 | 3_1:-70389546 | None:intergenic |
| AATGCAAATGTTATCCTCTA+AGG | 0.332745 | 3_1:-70389679 | None:intergenic |
| CATCCACTTCCGGTTCATTC+CGG | 0.337953 | 3_1:-70389992 | None:intergenic |
| TCCTGAACCAGTTCCGGTTC+AGG | 0.339236 | 3_1:-70389960 | None:intergenic |
| TACGGTTTCGGGAACGGAAT+CGG | 0.347727 | 3_1:-70389646 | None:intergenic |
| TTCACCTCCGAGTTTGTTGC+AGG | 0.360798 | 3_1:-70389703 | None:intergenic |
| CGTACCCGTTGATTCCTTAG+AGG | 0.363404 | 3_1:+70389665 | Msa0372080:CDS |
| ACCTGAACCGGAACTGGTTC+AGG | 0.363541 | 3_1:+70389959 | Msa0372080:CDS |
| ACTCCCCTGTTGGTCGTTAC+CGG | 0.375364 | 3_1:-70393318 | None:intergenic |
| ACATGATCCTGAACCAGTTC+CGG | 0.376766 | 3_1:-70389966 | None:intergenic |
| ACGGTTTCGGGAACGGAATC+GGG | 0.382635 | 3_1:-70389645 | None:intergenic |
| ACTGGTGGTGGTAGTGGTGG+TGG | 0.389224 | 3_1:+70390224 | Msa0372080:CDS |
| CATTTATCCTTGAGATCAAC+AGG | 0.393896 | 3_1:-70391740 | None:intergenic |
| TCTTCAGAACCAGAAACTTT+CGG | 0.400056 | 3_1:-70390017 | None:intergenic |
| CAAGTAGAACTTGTACTTAC+CGG | 0.405089 | 3_1:+70393299 | Msa0372080:exon |
| AACTAAAGATTCTGATTTCG+AGG | 0.416086 | 3_1:+70390118 | Msa0372080:CDS |
| CGGAAAACTGGTGGTGGTAG+TGG | 0.416507 | 3_1:+70390218 | Msa0372080:CDS |
| TTGCTCAGGGAACGGAAAAC+TGG | 0.433257 | 3_1:+70390206 | Msa0372080:CDS |
| ACTTTCGGTTCATCCACTTC+CGG | 0.435100 | 3_1:-70390002 | None:intergenic |
| GGTTGAACCTGAACCGGAAC+TGG | 0.438380 | 3_1:+70389953 | Msa0372080:CDS |
| ACTTACCGGTAACGACCAAC+AGG | 0.441671 | 3_1:+70393313 | Msa0372080:three_prime_UTR |
| GGTGGTGGTAGTGGTGGTGG+TGG | 0.444320 | 3_1:+70390227 | Msa0372080:CDS |
| GAAAACGTAAGAGATTGAAT+TGG | 0.465382 | 3_1:+70391064 | Msa0372080:CDS |
| CAAACACCAAACAGTGCATA+AGG | 0.465899 | 3_1:+70389914 | Msa0372080:CDS |
| AACGGGTACGGTTTCGGGAA+CGG | 0.467703 | 3_1:-70389652 | None:intergenic |
| TCATGTAAACCGGAATGAAC+CGG | 0.485033 | 3_1:+70389983 | Msa0372080:CDS |
| AGAATAAAATCCGTCGTCAC+CGG | 0.489382 | 3_1:+70389486 | Msa0372080:CDS |
| TTATCCTCTAAGGAATCAAC+GGG | 0.490208 | 3_1:-70389669 | None:intergenic |
| GCAACCGGTTGAACCTGAAC+CGG | 0.491105 | 3_1:+70389947 | Msa0372080:CDS |
| CCAAACAGTGCATAAGGATA+AGG | 0.492268 | 3_1:+70389920 | Msa0372080:CDS |
| AGTTCCGGTTCAGGTTCAAC+CGG | 0.493660 | 3_1:-70389951 | None:intergenic |
| AAACCGGAATGAACCGGAAG+TGG | 0.502517 | 3_1:+70389989 | Msa0372080:CDS |
| TAAGGATAAGGAAAAGCAAC+CGG | 0.514343 | 3_1:+70389932 | Msa0372080:CDS |
| GGCTGCATTGTGGTCGTCGT+TGG | 0.520462 | 3_1:-70389568 | None:intergenic |
| TGGTTCAGGATCATGTAAAC+CGG | 0.529209 | 3_1:+70389973 | Msa0372080:CDS |
| GTTTCTGTGGCGGAGAAGAA+AGG | 0.529575 | 3_1:+70390140 | Msa0372080:CDS |
| TGCATTACCTGCAACAAACT+CGG | 0.529643 | 3_1:+70389696 | Msa0372080:CDS |
| TCGGGAACGGAATCGGGAAG+TGG | 0.533711 | 3_1:-70389639 | None:intergenic |
| GTTATCCTCTAAGGAATCAA+CGG | 0.537345 | 3_1:-70389670 | None:intergenic |
| GAGAGGAATTGGAGAGGCGG+CGG | 0.541460 | 3_1:-70389535 | None:intergenic |
| TGCATTGTGGTCGTCGTTGG+TGG | 0.547328 | 3_1:-70389565 | None:intergenic |
| TTCTGATTTCGAGGTTTCTG+TGG | 0.547418 | 3_1:+70390127 | Msa0372080:CDS |
| CTCTAAGGAATCAACGGGTA+CGG | 0.549071 | 3_1:-70389664 | None:intergenic |
| AGCAGCCTTACGTTTAACAT+TGG | 0.557451 | 3_1:-70390168 | None:intergenic |
| TCGTGCCAATGTTAAACGTA+AGG | 0.561986 | 3_1:+70390163 | Msa0372080:CDS |
| CAGAAGATCAGAATATCCCT+TGG | 0.568204 | 3_1:+70391669 | Msa0372080:CDS |
| ATTGTGGTCGTCGTTGGTGG+TGG | 0.568451 | 3_1:-70389562 | None:intergenic |
| CGGGAAGTGGAGTGTGAGTG+TGG | 0.569480 | 3_1:-70389626 | None:intergenic |
| TCGCACTCCTGTTGATCTCA+AGG | 0.571882 | 3_1:+70391733 | Msa0372080:CDS |
| GGAATTGGAGAGGCGGCGGA+AGG | 0.573812 | 3_1:-70389531 | None:intergenic |
| AAGATCAGAATATCCCTTGG+AGG | 0.574002 | 3_1:+70391672 | Msa0372080:CDS |
| GAAAGTTTCTGGTTCTGAAG+AGG | 0.574074 | 3_1:+70390019 | Msa0372080:CDS |
| TGTAATCAAAACTCCCCTGT+TGG | 0.575285 | 3_1:-70393328 | None:intergenic |
| GTCGCTGTTGCTGTTGTAGA+CGG | 0.577461 | 3_1:-70389589 | None:intergenic |
| AATGGAGGAGCATTACCTCC+AGG | 0.577985 | 3_1:+70391759 | Msa0372080:CDS |
| AAAACTGGTGGTGGTAGTGG+TGG | 0.580026 | 3_1:+70390221 | Msa0372080:CDS |
| TATACTACGGCGGCGAACAC+CGG | 0.582649 | 3_1:-70389505 | None:intergenic |
| GGAGAGGAGAGGAATTGGAG+AGG | 0.584895 | 3_1:-70389541 | None:intergenic |
| TGATTTCGAGGTTTCTGTGG+CGG | 0.600498 | 3_1:+70390130 | Msa0372080:CDS |
| AGGGAACGGAAAACTGGTGG+TGG | 0.612464 | 3_1:+70390212 | Msa0372080:CDS |
| CGGCGGAAGGTGTTATACTA+CGG | 0.614400 | 3_1:-70389518 | None:intergenic |
| GCGGCGAACACCGGTGACGA+CGG | 0.614754 | 3_1:-70389496 | None:intergenic |
| GTCTACAACAGCAACAGCGA+CGG | 0.620104 | 3_1:+70389591 | Msa0372080:CDS |
| TGGTGGTGGTGACGTAGACG+AGG | 0.624663 | 3_1:+70390241 | Msa0372080:CDS |
| TGTTGTAGACGGCTGCATTG+TGG | 0.624933 | 3_1:-70389578 | None:intergenic |
| GAGGAGAGGAATTGGAGAGG+CGG | 0.626329 | 3_1:-70389538 | None:intergenic |
| ACGAAGCAGAATATGCTGAC+TGG | 0.626474 | 3_1:+70391042 | Msa0372080:CDS |
| TACAACAGCAACAGCGACGG+CGG | 0.627964 | 3_1:+70389594 | Msa0372080:CDS |
| CTCAGGGAACGGAAAACTGG+TGG | 0.642678 | 3_1:+70390209 | Msa0372080:CDS |
| AGGAGCATTACCTCCAGGCA+AGG | 0.648306 | 3_1:+70391764 | Msa0372080:CDS |
| TCGTTGGTGGTGGAGAGGAG+AGG | 0.652897 | 3_1:-70389552 | None:intergenic |
| GGTCGTCGTTGGTGGTGGAG+AGG | 0.664183 | 3_1:-70389557 | None:intergenic |
| GAAGTGGAGTGTGAGTGTGG+TGG | 0.671974 | 3_1:-70389623 | None:intergenic |
| TTGATCTCAAGGATAAATGG+AGG | 0.683743 | 3_1:+70391744 | Msa0372080:CDS |
| TGGTGGTGACGTAGACGAGG+AGG | 0.689122 | 3_1:+70390244 | Msa0372080:CDS |
| CTTACCGGTAACGACCAACA+GGG | 0.694515 | 3_1:+70393314 | Msa0372080:three_prime_UTR |
| CGGAAGGTGTTATACTACGG+CGG | 0.713230 | 3_1:-70389515 | None:intergenic |
| TTACCGGTAACGACCAACAG+GGG | 0.715608 | 3_1:+70393315 | Msa0372080:three_prime_UTR |
| ATTACCTGCAACAAACTCGG+AGG | 0.764721 | 3_1:+70389699 | Msa0372080:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTTAATTATTTTTCAATTA+AGG | + | chr3_1:70390626-70390645 | Msa0372080:intron | 10.0% |
| !! | TTTATAATAATTGAATTTCT+AGG | + | chr3_1:70391812-70391831 | Msa0372080:intron | 10.0% |
| !! | AAAACAGATATAATCAATTA+TGG | + | chr3_1:70391372-70391391 | Msa0372080:intron | 15.0% |
| !! | AAACAGATATAATCAATTAT+GGG | + | chr3_1:70391373-70391392 | Msa0372080:intron | 15.0% |
| !! | ATAATATAGAATCATCAAAA+AGG | - | chr3_1:70392321-70392340 | None:intergenic | 15.0% |
| !!! | TTTTTGATGATTCTATATTA+TGG | + | chr3_1:70392320-70392339 | Msa0372080:intron | 15.0% |
| !!! | TCACTATCAATTTTTTTATA+GGG | - | chr3_1:70393021-70393040 | None:intergenic | 15.0% |
| !!! | TCTTTTATGATAGAACATTA+TGG | + | chr3_1:70391227-70391246 | Msa0372080:intron | 20.0% |
| !!! | TATAAATATCGATTATAGCT+CGG | - | chr3_1:70391798-70391817 | None:intergenic | 20.0% |
| !!! | CATAAGAAAGAATTCTTTTT+GGG | + | chr3_1:70391934-70391953 | Msa0372080:intron | 20.0% |
| !!! | ATAAGAAAGAATTCTTTTTG+GGG | + | chr3_1:70391935-70391954 | Msa0372080:intron | 20.0% |
| !!! | TACATATTTAAAGTATGACA+AGG | + | chr3_1:70392165-70392184 | Msa0372080:intron | 20.0% |
| !!! | AATCACTTTTCTAATTTCTT+TGG | + | chr3_1:70392269-70392288 | Msa0372080:intron | 20.0% |
| !! | AAGCAAATGAATTCTTTATT+CGG | - | chr3_1:70392811-70392830 | None:intergenic | 20.0% |
| !!! | GTCACTATCAATTTTTTTAT+AGG | - | chr3_1:70393022-70393041 | None:intergenic | 20.0% |
| !! | AATACTAATAACAGTTTAAG+TGG | - | chr3_1:70393080-70393099 | None:intergenic | 20.0% |
| !! | ATACTAACTTCTATTATTTC+AGG | - | chr3_1:70393156-70393175 | None:intergenic | 20.0% |
| ! | TACTACTACTACTACTTAAT+TGG | - | chr3_1:70390403-70390422 | None:intergenic | 25.0% |
| !!! | ATTTTTCAATTAAGGCTACA+AGG | + | chr3_1:70390634-70390653 | Msa0372080:intron | 25.0% |
| !!! | TTTTTCAATTAAGGCTACAA+GGG | + | chr3_1:70390635-70390654 | Msa0372080:intron | 25.0% |
| ! | TTGATTAAAAAAGACACGTT+TGG | - | chr3_1:70390772-70390791 | None:intergenic | 25.0% |
| ! | ATGTTCTATCATAAAAGAGA+TGG | - | chr3_1:70391225-70391244 | None:intergenic | 25.0% |
| ! | AGAAACTTAAAATGTTTACC+AGG | - | chr3_1:70391324-70391343 | None:intergenic | 25.0% |
| !!! | GTCTTAGCTTTATTTTCTAT+AGG | + | chr3_1:70391428-70391447 | Msa0372080:intron | 25.0% |
| !! | ATTTTCTATAGGCAAATTCT+TGG | + | chr3_1:70391439-70391458 | Msa0372080:intron | 25.0% |
| ! | TTAGTTATTATTACTGCTCA+AGG | + | chr3_1:70391577-70391596 | Msa0372080:intron | 25.0% |
| !!! | ATTCTAAAATTTTCCTCCAA+GGG | - | chr3_1:70391688-70391707 | None:intergenic | 25.0% |
| !!! | AATTCTAAAATTTTCCTCCA+AGG | - | chr3_1:70391689-70391708 | None:intergenic | 25.0% |
| !!! | TGGAGGAAAATTTTAGAATT+CGG | + | chr3_1:70391689-70391708 | Msa0372080:CDS | 25.0% |
| !!! | TAGCTTTATTGCAAATTTCA+TGG | + | chr3_1:70391902-70391921 | Msa0372080:intron | 25.0% |
| !! | GCATAAGAAAGAATTCTTTT+TGG | + | chr3_1:70391933-70391952 | Msa0372080:intron | 25.0% |
| !! | TGTTTTCATCTCTTCTTAAT+AGG | + | chr3_1:70391962-70391981 | Msa0372080:intron | 25.0% |
| !! | TAATGCATCTGAAATAAAGT+TGG | - | chr3_1:70391995-70392014 | None:intergenic | 25.0% |
| !!! | TTCTTTGGAACAATCATTTT+AGG | + | chr3_1:70392284-70392303 | Msa0372080:intron | 25.0% |
| !! | AATCATTTTGTGCATTTTGT+TGG | + | chr3_1:70392387-70392406 | Msa0372080:intron | 25.0% |
| !!! | AACTTGTTTTGACATTTGTT+TGG | + | chr3_1:70392439-70392458 | Msa0372080:intron | 25.0% |
| !!! | ACTTGTTTTGACATTTGTTT+GGG | + | chr3_1:70392440-70392459 | Msa0372080:intron | 25.0% |
| !!! | AAAAAATTGATAGTGACTGA+AGG | + | chr3_1:70393025-70393044 | Msa0372080:intron | 25.0% |
| ! | TTTCAGACAATAAAGATGAA+AGG | - | chr3_1:70393054-70393073 | None:intergenic | 25.0% |
| ! | GAGTGTCATAAAAAGAAAAA+AGG | - | chr3_1:70393117-70393136 | None:intergenic | 25.0% |
| ! | ACTCAATAAAAAACATGACT+AGG | - | chr3_1:70393404-70393423 | None:intergenic | 25.0% |
| ! | TGTACGAAGAATTGTAAAAA+TGG | + | chr3_1:70393493-70393512 | Msa0372080:three_prime_UTR | 25.0% |
| ! | GTACGAAGAATTGTAAAAAT+GGG | + | chr3_1:70393494-70393513 | Msa0372080:three_prime_UTR | 25.0% |
| AATGCAAATGTTATCCTCTA+AGG | - | chr3_1:70389682-70389701 | None:intergenic | 30.0% | |
| ! | AGAATCATCGAATTTAGGTT+CGG | - | chr3_1:70389787-70389806 | None:intergenic | 30.0% |
| TTTCCAGAATCATCGAATTT+AGG | - | chr3_1:70389792-70389811 | None:intergenic | 30.0% | |
| ATTAAGAGAAAAAGCGATTC+TGG | + | chr3_1:70389863-70389882 | Msa0372080:CDS | 30.0% | |
| GAGGAAAGTAGTAATGATAA+TGG | + | chr3_1:70390038-70390057 | Msa0372080:intron | 30.0% | |
| AACTAAAGATTCTGATTTCG+AGG | + | chr3_1:70390118-70390137 | Msa0372080:CDS | 30.0% | |
| TTTCACATTCATTGAACTTC+AGG | - | chr3_1:70390326-70390345 | None:intergenic | 30.0% | |
| ! | TTTGATAAGCTAGCTTATAG+TGG | + | chr3_1:70390501-70390520 | Msa0372080:intron | 30.0% |
| ! | TTAGTGTTTGATAGCATTAG+TGG | + | chr3_1:70390551-70390570 | Msa0372080:intron | 30.0% |
| AAGCTATAAGCTCATATATG+TGG | + | chr3_1:70390816-70390835 | Msa0372080:intron | 30.0% | |
| ATCGAATATAACCACATTTG+GGG | - | chr3_1:70390855-70390874 | None:intergenic | 30.0% | |
| GATCGAATATAACCACATTT+GGG | - | chr3_1:70390856-70390875 | None:intergenic | 30.0% | |
| TGATCGAATATAACCACATT+TGG | - | chr3_1:70390857-70390876 | None:intergenic | 30.0% | |
| CAAAACACTGACAGAAAAAA+CGG | - | chr3_1:70390935-70390954 | None:intergenic | 30.0% | |
| !! | GAATAGAGCTGATATTTTGA+TGG | + | chr3_1:70390957-70390976 | Msa0372080:intron | 30.0% |
| ! | GATTTGTCTTTAGGTATTGT+TGG | + | chr3_1:70390986-70391005 | Msa0372080:intron | 30.0% |
| GAAAACGTAAGAGATTGAAT+TGG | + | chr3_1:70391064-70391083 | Msa0372080:CDS | 30.0% | |
| TGAAGAAGAAAAAGTTCTCA+AGG | + | chr3_1:70391092-70391111 | Msa0372080:CDS | 30.0% | |
| ATTAGAGCGTGATATCAATA+AGG | - | chr3_1:70391132-70391151 | None:intergenic | 30.0% | |
| CAAAATCAAGTCAGAAGTAA+AGG | - | chr3_1:70391161-70391180 | None:intergenic | 30.0% | |
| !! | CTTTACTTCTGACTTGATTT+TGG | + | chr3_1:70391159-70391178 | Msa0372080:intron | 30.0% |
| TAGAACATTATGGCGTAATT+TGG | + | chr3_1:70391237-70391256 | Msa0372080:intron | 30.0% | |
| !!! | ACTTTTGTTTTTTGCATTGC+AGG | + | chr3_1:70391625-70391644 | Msa0372080:intron | 30.0% |
| AAAAGGGTAATGAAATATCG+AGG | - | chr3_1:70392056-70392075 | None:intergenic | 30.0% | |
| TGTAAAGCAAACATCATATC+AGG | - | chr3_1:70392199-70392218 | None:intergenic | 30.0% | |
| !!! | CTTGTTTTGACATTTGTTTG+GGG | + | chr3_1:70392441-70392460 | Msa0372080:intron | 30.0% |
| !! | TAAAAGTTGGTTTGGTAGTT+GGG | + | chr3_1:70392590-70392609 | Msa0372080:intron | 30.0% |
| AGTTCAACTCATGTTTCAAA+TGG | + | chr3_1:70392862-70392881 | Msa0372080:intron | 30.0% | |
| GTTCAACTCATGTTTCAAAT+GGG | + | chr3_1:70392863-70392882 | Msa0372080:intron | 30.0% | |
| ATGCATGTTTCGACTAATAT+TGG | + | chr3_1:70393186-70393205 | Msa0372080:intron | 30.0% | |
| TCATCTAAATCGCAATCTTA+TGG | - | chr3_1:70393223-70393242 | None:intergenic | 30.0% | |
| GATTACATTACAGCAAAAAG+TGG | + | chr3_1:70393344-70393363 | Msa0372080:three_prime_UTR | 30.0% | |
| ATGACTTTGTACACAGTTAT+TGG | - | chr3_1:70393450-70393469 | None:intergenic | 30.0% | |
| ! | TTATCCTCTAAGGAATCAAC+GGG | - | chr3_1:70389672-70389691 | None:intergenic | 35.0% |
| ! | GTTATCCTCTAAGGAATCAA+CGG | - | chr3_1:70389673-70389692 | None:intergenic | 35.0% |
| GAACCTAAATTCGATGATTC+TGG | + | chr3_1:70389786-70389805 | Msa0372080:intron | 35.0% | |
| TAAGGATAAGGAAAAGCAAC+CGG | + | chr3_1:70389932-70389951 | Msa0372080:CDS | 35.0% | |
| TCTTCAGAACCAGAAACTTT+CGG | - | chr3_1:70390020-70390039 | None:intergenic | 35.0% | |
| GGAAATGATGAAGATGAAGA+TGG | + | chr3_1:70390059-70390078 | Msa0372080:intron | 35.0% | |
| AATGATGAAGATGAAGATGG+AGG | + | chr3_1:70390062-70390081 | Msa0372080:intron | 35.0% | |
| !! | TGTGAAAAAAGCATTGCTCA+GGG | + | chr3_1:70390193-70390212 | Msa0372080:CDS | 35.0% |
| ! | TTTAGATTGAAGGCGTGATA+AGG | + | chr3_1:70390451-70390470 | Msa0372080:intron | 35.0% |
| !! | TGGAGAGTTGATTTGTCTTT+AGG | + | chr3_1:70390977-70390996 | Msa0372080:intron | 35.0% |
| !! | ACTTCTGACTTGATTTTGGA+TGG | + | chr3_1:70391163-70391182 | Msa0372080:intron | 35.0% |
| !! | ATGGCTTACTGGTTTAATCA+CGG | + | chr3_1:70391182-70391201 | Msa0372080:intron | 35.0% |
| TTCTATAGGCAAATTCTTGG+CGG | + | chr3_1:70391442-70391461 | Msa0372080:intron | 35.0% | |
| !! | TTCTTGGCGGTTAATTTGTT+AGG | + | chr3_1:70391455-70391474 | Msa0372080:intron | 35.0% |
| !! | TCTTGGCGGTTAATTTGTTA+GGG | + | chr3_1:70391456-70391475 | Msa0372080:intron | 35.0% |
| !!! | TTGTTTTTTGCATTGCAGGA+AGG | + | chr3_1:70391629-70391648 | Msa0372080:intron | 35.0% |
| CATTTATCCTTGAGATCAAC+AGG | - | chr3_1:70391743-70391762 | None:intergenic | 35.0% | |
| CTGTTGATCTCAAGGATAAA+TGG | + | chr3_1:70391741-70391760 | Msa0372080:CDS | 35.0% | |
| TTGATCTCAAGGATAAATGG+AGG | + | chr3_1:70391744-70391763 | Msa0372080:CDS | 35.0% | |
| CTATATTGTATTGTATGCCC+TGG | + | chr3_1:70391857-70391876 | Msa0372080:intron | 35.0% | |
| CAAAAAACCCAAAGTTTCCA+GGG | - | chr3_1:70391877-70391896 | None:intergenic | 35.0% | |
| AAATTAACTCCGAAAGAGCA+AGG | + | chr3_1:70392223-70392242 | Msa0372080:intron | 35.0% | |
| GAAAAAATGCCTTGCTCTTT+CGG | - | chr3_1:70392235-70392254 | None:intergenic | 35.0% | |
| ! | TTTTGTGCATTTTGTTGGAG+AGG | + | chr3_1:70392392-70392411 | Msa0372080:intron | 35.0% |
| !! | TTGTTTGGGGATTTGTTATG+AGG | + | chr3_1:70392454-70392473 | Msa0372080:intron | 35.0% |
| ATACAAGACCATTGGTAAAG+AGG | + | chr3_1:70392500-70392519 | Msa0372080:intron | 35.0% | |
| GGCTGTATGATATGAAGAAT+AGG | + | chr3_1:70392521-70392540 | Msa0372080:intron | 35.0% | |
| TGAAGAATAGGATGAGAAAC+TGG | + | chr3_1:70392533-70392552 | Msa0372080:intron | 35.0% | |
| GAAGAATAGGATGAGAAACT+GGG | + | chr3_1:70392534-70392553 | Msa0372080:intron | 35.0% | |
| AAGAATAGGATGAGAAACTG+GGG | + | chr3_1:70392535-70392554 | Msa0372080:intron | 35.0% | |
| !! | CCAACTTTTAGAAGATGCAA+GGG | - | chr3_1:70392580-70392599 | None:intergenic | 35.0% |
| !! | ACCAACTTTTAGAAGATGCA+AGG | - | chr3_1:70392581-70392600 | None:intergenic | 35.0% |
| ! | GCATCTTCTAAAAGTTGGTT+TGG | + | chr3_1:70392582-70392601 | Msa0372080:intron | 35.0% |
| !! | CTAAAAGTTGGTTTGGTAGT+TGG | + | chr3_1:70392589-70392608 | Msa0372080:intron | 35.0% |
| TAGTTGGGAGAAATAGTTGT+AGG | + | chr3_1:70392605-70392624 | Msa0372080:intron | 35.0% | |
| TATAACAGTTAGGACTTAGG+AGG | + | chr3_1:70392645-70392664 | Msa0372080:intron | 35.0% | |
| ATAACAGTTAGGACTTAGGA+GGG | + | chr3_1:70392646-70392665 | Msa0372080:intron | 35.0% | |
| ! | CAGCTCTCTAATTTTCCATT+CGG | + | chr3_1:70392747-70392766 | Msa0372080:intron | 35.0% |
| TTTGCTTATGTACCAGTTGA+AGG | + | chr3_1:70392824-70392843 | Msa0372080:intron | 35.0% | |
| AACAGAATTTAGCTAGGGAA+TGG | - | chr3_1:70392996-70393015 | None:intergenic | 35.0% | |
| GGGATAACAGAATTTAGCTA+GGG | - | chr3_1:70393001-70393020 | None:intergenic | 35.0% | |
| AGGGATAACAGAATTTAGCT+AGG | - | chr3_1:70393002-70393021 | None:intergenic | 35.0% | |
| ATTTCAGGCAATGTAACTGA+GGG | - | chr3_1:70393141-70393160 | None:intergenic | 35.0% | |
| TATTTCAGGCAATGTAACTG+AGG | - | chr3_1:70393142-70393161 | None:intergenic | 35.0% | |
| ! | ATAACTGTTTTGCTACACAC+AGG | + | chr3_1:70393273-70393292 | Msa0372080:intron | 35.0% |
| CAAGTAGAACTTGTACTTAC+CGG | + | chr3_1:70393299-70393318 | Msa0372080:exon | 35.0% | |
| TACATTACAGCAAAAAGTGG+AGG | + | chr3_1:70393347-70393366 | Msa0372080:three_prime_UTR | 35.0% | |
| AGAATAAAATCCGTCGTCAC+CGG | + | chr3_1:70389486-70389505 | Msa0372080:CDS | 40.0% | |
| TGCATTACCTGCAACAAACT+CGG | + | chr3_1:70389696-70389715 | Msa0372080:CDS | 40.0% | |
| CAAACACCAAACAGTGCATA+AGG | + | chr3_1:70389914-70389933 | Msa0372080:CDS | 40.0% | |
| CCTTATCCTTATGCACTGTT+TGG | - | chr3_1:70389923-70389942 | None:intergenic | 40.0% | |
| CCAAACAGTGCATAAGGATA+AGG | + | chr3_1:70389920-70389939 | Msa0372080:CDS | 40.0% | |
| TGGTTCAGGATCATGTAAAC+CGG | + | chr3_1:70389973-70389992 | Msa0372080:CDS | 40.0% | |
| TCATGTAAACCGGAATGAAC+CGG | + | chr3_1:70389983-70390002 | Msa0372080:CDS | 40.0% | |
| !! | GAAAGTTTCTGGTTCTGAAG+AGG | + | chr3_1:70390019-70390038 | Msa0372080:CDS | 40.0% |
| TGAAGATGAAGATGGAGGAA+AGG | + | chr3_1:70390067-70390086 | Msa0372080:intron | 40.0% | |
| TTCTGATTTCGAGGTTTCTG+TGG | + | chr3_1:70390127-70390146 | Msa0372080:CDS | 40.0% | |
| TCGTGCCAATGTTAAACGTA+AGG | + | chr3_1:70390163-70390182 | Msa0372080:CDS | 40.0% | |
| AGCAGCCTTACGTTTAACAT+TGG | - | chr3_1:70390171-70390190 | None:intergenic | 40.0% | |
| !!! | CTGAGCAATGCTTTTTTCAC+AGG | - | chr3_1:70390194-70390213 | None:intergenic | 40.0% |
| !! | CTGTGAAAAAAGCATTGCTC+AGG | + | chr3_1:70390192-70390211 | Msa0372080:CDS | 40.0% |
| !! | AAAAAGCATTGCTCAGGGAA+CGG | + | chr3_1:70390198-70390217 | Msa0372080:CDS | 40.0% |
| CTTTCGTACTCTTGAAGTTC+TGG | - | chr3_1:70390282-70390301 | None:intergenic | 40.0% | |
| ! | GCACTGACACTTTAGATTGA+AGG | + | chr3_1:70390441-70390460 | Msa0372080:intron | 40.0% |
| ! | CTTGATTTTGGATGGCTTAC+TGG | + | chr3_1:70391171-70391190 | Msa0372080:intron | 40.0% |
| GTTGTTAGTTCACAACTTCC+TGG | + | chr3_1:70391303-70391322 | Msa0372080:intron | 40.0% | |
| GGGATGCTTACATTTGATCA+AGG | + | chr3_1:70391393-70391412 | Msa0372080:intron | 40.0% | |
| !! | CTTGGCGGTTAATTTGTTAG+GGG | + | chr3_1:70391457-70391476 | Msa0372080:intron | 40.0% |
| !! | TTGGCGGTTAATTTGTTAGG+GGG | + | chr3_1:70391458-70391477 | Msa0372080:intron | 40.0% |
| ! | AGTTTGGGACACAAAAAGAG+TGG | - | chr3_1:70391528-70391547 | None:intergenic | 40.0% |
| ATGCTCAGTGGTATGAGTTT+GGG | - | chr3_1:70391543-70391562 | None:intergenic | 40.0% | |
| CAGAAGATCAGAATATCCCT+TGG | + | chr3_1:70391669-70391688 | Msa0372080:CDS | 40.0% | |
| AAGATCAGAATATCCCTTGG+AGG | + | chr3_1:70391672-70391691 | Msa0372080:CDS | 40.0% | |
| ATTGTATGCCCTGGAAACTT+TGG | + | chr3_1:70391866-70391885 | Msa0372080:intron | 40.0% | |
| TTGTATGCCCTGGAAACTTT+GGG | + | chr3_1:70391867-70391886 | Msa0372080:intron | 40.0% | |
| GCAAAAAACCCAAAGTTTCC+AGG | - | chr3_1:70391878-70391897 | None:intergenic | 40.0% | |
| GGGTAATGAAATATCGAGGT+AGG | - | chr3_1:70392052-70392071 | None:intergenic | 40.0% | |
| ATGTGCATACGAGAGCAAAA+GGG | - | chr3_1:70392072-70392091 | None:intergenic | 40.0% | |
| TATGTGCATACGAGAGCAAA+AGG | - | chr3_1:70392073-70392092 | None:intergenic | 40.0% | |
| ! | CAATACCCTATGAAAGTGTG+TGG | - | chr3_1:70392103-70392122 | None:intergenic | 40.0% |
| AAACATCATATCAGGCTAGC+GGG | - | chr3_1:70392191-70392210 | None:intergenic | 40.0% | |
| CAAACATCATATCAGGCTAG+CGG | - | chr3_1:70392192-70392211 | None:intergenic | 40.0% | |
| GCTTCTTGATACAAGACCAT+TGG | + | chr3_1:70392492-70392511 | Msa0372080:intron | 40.0% | |
| TCATACAGCCTCTTTACCAA+TGG | - | chr3_1:70392511-70392530 | None:intergenic | 40.0% | |
| ! | CCCTTGCATCTTCTAAAAGT+TGG | + | chr3_1:70392577-70392596 | Msa0372080:intron | 40.0% |
| GACCTAACGGTATAACAGTT+AGG | + | chr3_1:70392635-70392654 | Msa0372080:intron | 40.0% | |
| GTCCTAACTGTTATACCGTT+AGG | - | chr3_1:70392640-70392659 | None:intergenic | 40.0% | |
| CGGTATAACAGTTAGGACTT+AGG | + | chr3_1:70392642-70392661 | Msa0372080:intron | 40.0% | |
| TAACAGTTAGGACTTAGGAG+GGG | + | chr3_1:70392647-70392666 | Msa0372080:intron | 40.0% | |
| ATAAGAGAGGGCTAGAGAAA+TGG | + | chr3_1:70392679-70392698 | Msa0372080:intron | 40.0% | |
| AAAAACTGGTGGAGAGAAAG+TGG | + | chr3_1:70392712-70392731 | Msa0372080:intron | 40.0% | |
| AAAACTGGTGGAGAGAAAGT+GGG | + | chr3_1:70392713-70392732 | Msa0372080:intron | 40.0% | |
| TGAGAAAGAGAAGGGTGAAA+AGG | - | chr3_1:70392775-70392794 | None:intergenic | 40.0% | |
| GCTCAATGTGAGAAAGAGAA+GGG | - | chr3_1:70392783-70392802 | None:intergenic | 40.0% | |
| TGCTCAATGTGAGAAAGAGA+AGG | - | chr3_1:70392784-70392803 | None:intergenic | 40.0% | |
| GTAAGAATGATGCCTTCAAC+TGG | - | chr3_1:70392839-70392858 | None:intergenic | 40.0% | |
| CAGAGACAGACAAATACAGT+TGG | - | chr3_1:70392969-70392988 | None:intergenic | 40.0% | |
| AGAATTTAGCTAGGGAATGG+AGG | - | chr3_1:70392993-70393012 | None:intergenic | 40.0% | |
| TGTAATCAAAACTCCCCTGT+TGG | - | chr3_1:70393331-70393350 | None:intergenic | 40.0% | |
| TTACAGCAAAAAGTGGAGGA+AGG | + | chr3_1:70393351-70393370 | Msa0372080:three_prime_UTR | 40.0% | |
| ! | CTCTAAGGAATCAACGGGTA+CGG | - | chr3_1:70389667-70389686 | None:intergenic | 45.0% |
| ATTACCTGCAACAAACTCGG+AGG | + | chr3_1:70389699-70389718 | Msa0372080:CDS | 45.0% | |
| ! | AGAAACGGGACAATCGGTTT+GGG | - | chr3_1:70389742-70389761 | None:intergenic | 45.0% |
| GCGCGTTTGTAAGCACAATA+AGG | - | chr3_1:70389825-70389844 | None:intergenic | 45.0% | |
| ACATGATCCTGAACCAGTTC+CGG | - | chr3_1:70389969-70389988 | None:intergenic | 45.0% | |
| ACTTTCGGTTCATCCACTTC+CGG | - | chr3_1:70390005-70390024 | None:intergenic | 45.0% | |
| GTGGATGAACCGAAAGTTTC+TGG | + | chr3_1:70390008-70390027 | Msa0372080:CDS | 45.0% | |
| GGAGGAAAGGTTTCTGTATC+AGG | + | chr3_1:70390080-70390099 | Msa0372080:intron | 45.0% | |
| TGATTTCGAGGTTTCTGTGG+CGG | + | chr3_1:70390130-70390149 | Msa0372080:CDS | 45.0% | |
| TACCAAACAGACCCCAAATG+TGG | + | chr3_1:70390841-70390860 | Msa0372080:intron | 45.0% | |
| ! | AACCACATTTGGGGTCTGTT+TGG | - | chr3_1:70390846-70390865 | None:intergenic | 45.0% |
| ACGAAGCAGAATATGCTGAC+TGG | + | chr3_1:70391042-70391061 | Msa0372080:CDS | 45.0% | |
| ! | AAGCCTTATCCCACTAAGTG+GGG | - | chr3_1:70391276-70391295 | None:intergenic | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | - | chr3_1:70391277-70391296 | None:intergenic | 45.0% |
| !! | CGGTTAATTTGTTAGGGGGA+GGG | + | chr3_1:70391462-70391481 | Msa0372080:intron | 45.0% |
| !! | GGTTAATTTGTTAGGGGGAG+GGG | + | chr3_1:70391463-70391482 | Msa0372080:intron | 45.0% |
| !! | GTTAATTTGTTAGGGGGAGG+GGG | + | chr3_1:70391464-70391483 | Msa0372080:intron | 45.0% |
| AGGGGGATTTGTAAGTAGCA+TGG | + | chr3_1:70391481-70391500 | Msa0372080:intron | 45.0% | |
| GGGACACAAAAAGAGTGGTA+TGG | - | chr3_1:70391523-70391542 | None:intergenic | 45.0% | |
| CATGCTCAGTGGTATGAGTT+TGG | - | chr3_1:70391544-70391563 | None:intergenic | 45.0% | |
| TGAGTGTAGATCATGCTCAG+TGG | - | chr3_1:70391555-70391574 | None:intergenic | 45.0% | |
| ! | GGTAATTTTACCTTGCCTGG+AGG | - | chr3_1:70391777-70391796 | None:intergenic | 45.0% |
| ! | CTCGGTAATTTTACCTTGCC+TGG | - | chr3_1:70391780-70391799 | None:intergenic | 45.0% |
| AGGTAGGTGAGTGGATACAT+AGG | - | chr3_1:70392036-70392055 | None:intergenic | 45.0% | |
| GAAATATCGAGGTAGGTGAG+TGG | - | chr3_1:70392045-70392064 | None:intergenic | 45.0% | |
| TGTCTGCCACACACTTTCAT+AGG | + | chr3_1:70392094-70392113 | Msa0372080:intron | 45.0% | |
| GTCTGCCACACACTTTCATA+GGG | + | chr3_1:70392095-70392114 | Msa0372080:intron | 45.0% | |
| ! | GAAGATGCAAGGGTACAAGT+AGG | - | chr3_1:70392570-70392589 | None:intergenic | 45.0% |
| TGTAGGCTGTTGTGACCTAA+CGG | + | chr3_1:70392622-70392641 | Msa0372080:intron | 45.0% | |
| AACAGTTAGGACTTAGGAGG+GGG | + | chr3_1:70392648-70392667 | Msa0372080:intron | 45.0% | |
| AGAGGGCTAGAGAAATGGTA+GGG | + | chr3_1:70392684-70392703 | Msa0372080:intron | 45.0% | |
| AAGGGTGAAAAGGATCCGAA+TGG | - | chr3_1:70392765-70392784 | None:intergenic | 45.0% | |
| GCAAAAAGTGGAGGAAGGAT+AGG | + | chr3_1:70393356-70393375 | Msa0372080:three_prime_UTR | 45.0% | |
| !! | CGGAAGGTGTTATACTACGG+CGG | - | chr3_1:70389518-70389537 | None:intergenic | 50.0% |
| !! | CGGCGGAAGGTGTTATACTA+CGG | - | chr3_1:70389521-70389540 | None:intergenic | 50.0% |
| TGTTGTAGACGGCTGCATTG+TGG | - | chr3_1:70389581-70389600 | None:intergenic | 50.0% | |
| ! | GTCGCTGTTGCTGTTGTAGA+CGG | - | chr3_1:70389592-70389611 | None:intergenic | 50.0% |
| GTCTACAACAGCAACAGCGA+CGG | + | chr3_1:70389591-70389610 | Msa0372080:CDS | 50.0% | |
| TACGGTTTCGGGAACGGAAT+CGG | - | chr3_1:70389649-70389668 | None:intergenic | 50.0% | |
| GAATCAACGGGTACGGTTTC+GGG | - | chr3_1:70389660-70389679 | None:intergenic | 50.0% | |
| GGAATCAACGGGTACGGTTT+CGG | - | chr3_1:70389661-70389680 | None:intergenic | 50.0% | |
| !! | CGTACCCGTTGATTCCTTAG+AGG | + | chr3_1:70389665-70389684 | Msa0372080:CDS | 50.0% |
| !! | TTCACCTCCGAGTTTGTTGC+AGG | - | chr3_1:70389706-70389725 | None:intergenic | 50.0% |
| CAGAAACGGGACAATCGGTT+TGG | - | chr3_1:70389743-70389762 | None:intergenic | 50.0% | |
| GTGGACAGAAACGGGACAAT+CGG | - | chr3_1:70389748-70389767 | None:intergenic | 50.0% | |
| CAAGTGACGTGGACAGAAAC+GGG | - | chr3_1:70389756-70389775 | None:intergenic | 50.0% | |
| GCAAGTGACGTGGACAGAAA+CGG | - | chr3_1:70389757-70389776 | None:intergenic | 50.0% | |
| TCTGTCCACGTCACTTGCAT+CGG | + | chr3_1:70389759-70389778 | Msa0372080:intron | 50.0% | |
| ! | AGTTCCGGTTCAGGTTCAAC+CGG | - | chr3_1:70389954-70389973 | None:intergenic | 50.0% |
| AAACCGGAATGAACCGGAAG+TGG | + | chr3_1:70389989-70390008 | Msa0372080:CDS | 50.0% | |
| CATCCACTTCCGGTTCATTC+CGG | - | chr3_1:70389995-70390014 | None:intergenic | 50.0% | |
| ! | GTTTCTGTGGCGGAGAAGAA+AGG | + | chr3_1:70390140-70390159 | Msa0372080:CDS | 50.0% |
| TTGCTCAGGGAACGGAAAAC+TGG | + | chr3_1:70390206-70390225 | Msa0372080:CDS | 50.0% | |
| !! | AAAACTGGTGGTGGTAGTGG+TGG | + | chr3_1:70390221-70390240 | Msa0372080:CDS | 50.0% |
| ! | AGGCGTGATAAGGCTCTGAT+TGG | + | chr3_1:70390461-70390480 | Msa0372080:intron | 50.0% |
| ACTAAGTGGGGTCAGCTACA+TGG | - | chr3_1:70391264-70391283 | None:intergenic | 50.0% | |
| ATGTAGCTGACCCCACTTAG+TGG | + | chr3_1:70391263-70391282 | Msa0372080:intron | 50.0% | |
| TGTAGCTGACCCCACTTAGT+GGG | + | chr3_1:70391264-70391283 | Msa0372080:intron | 50.0% | |
| TGACCCCACTTAGTGGGATA+AGG | + | chr3_1:70391270-70391289 | Msa0372080:intron | 50.0% | |
| ! | CCAAGCCTTATCCCACTAAG+TGG | - | chr3_1:70391278-70391297 | None:intergenic | 50.0% |
| CCACTTAGTGGGATAAGGCT+TGG | + | chr3_1:70391275-70391294 | Msa0372080:intron | 50.0% | |
| !! | GCGGTTAATTTGTTAGGGGG+AGG | + | chr3_1:70391461-70391480 | Msa0372080:intron | 50.0% |
| TCGCACTCCTGTTGATCTCA+AGG | + | chr3_1:70391733-70391752 | Msa0372080:CDS | 50.0% | |
| !! | AATGGAGGAGCATTACCTCC+AGG | + | chr3_1:70391759-70391778 | Msa0372080:CDS | 50.0% |
| ACAGTTAGGACTTAGGAGGG+GGG | + | chr3_1:70392649-70392668 | Msa0372080:intron | 50.0% | |
| GAGAGGGCTAGAGAAATGGT+AGG | + | chr3_1:70392683-70392702 | Msa0372080:intron | 50.0% | |
| GAGGGCTAGAGAAATGGTAG+GGG | + | chr3_1:70392685-70392704 | Msa0372080:intron | 50.0% | |
| AGGGCTAGAGAAATGGTAGG+GGG | + | chr3_1:70392686-70392705 | Msa0372080:intron | 50.0% | |
| ATGGTAGGGGGGTGAAAAAC+TGG | + | chr3_1:70392698-70392717 | Msa0372080:intron | 50.0% | |
| GGAGAGAAAGTGGGAGAGTA+AGG | + | chr3_1:70392722-70392741 | Msa0372080:intron | 50.0% | |
| CATCACGTCTGCATGCTAGA+GGG | - | chr3_1:70392894-70392913 | None:intergenic | 50.0% | |
| ACATCACGTCTGCATGCTAG+AGG | - | chr3_1:70392895-70392914 | None:intergenic | 50.0% | |
| ACTTACCGGTAACGACCAAC+AGG | + | chr3_1:70393313-70393332 | Msa0372080:three_prime_UTR | 50.0% | |
| CTTACCGGTAACGACCAACA+GGG | + | chr3_1:70393314-70393333 | Msa0372080:three_prime_UTR | 50.0% | |
| TTACCGGTAACGACCAACAG+GGG | + | chr3_1:70393315-70393334 | Msa0372080:three_prime_UTR | 50.0% | |
| TATACTACGGCGGCGAACAC+CGG | - | chr3_1:70389508-70389527 | None:intergenic | 55.0% | |
| GAGGAGAGGAATTGGAGAGG+CGG | - | chr3_1:70389541-70389560 | None:intergenic | 55.0% | |
| GGAGAGGAGAGGAATTGGAG+AGG | - | chr3_1:70389544-70389563 | None:intergenic | 55.0% | |
| ! | GTGGTGGAGAGGAGAGGAAT+TGG | - | chr3_1:70389549-70389568 | None:intergenic | 55.0% |
| ! | ATTGTGGTCGTCGTTGGTGG+TGG | - | chr3_1:70389565-70389584 | None:intergenic | 55.0% |
| TGCATTGTGGTCGTCGTTGG+TGG | - | chr3_1:70389568-70389587 | None:intergenic | 55.0% | |
| TACAACAGCAACAGCGACGG+CGG | + | chr3_1:70389594-70389613 | Msa0372080:CDS | 55.0% | |
| GAAGTGGAGTGTGAGTGTGG+TGG | - | chr3_1:70389626-70389645 | None:intergenic | 55.0% | |
| ACGGTTTCGGGAACGGAATC+GGG | - | chr3_1:70389648-70389667 | None:intergenic | 55.0% | |
| AACGGGTACGGTTTCGGGAA+CGG | - | chr3_1:70389655-70389674 | None:intergenic | 55.0% | |
| GCAACCGGTTGAACCTGAAC+CGG | + | chr3_1:70389947-70389966 | Msa0372080:CDS | 55.0% | |
| GGTTGAACCTGAACCGGAAC+TGG | + | chr3_1:70389953-70389972 | Msa0372080:CDS | 55.0% | |
| ! | ACCTGAACCGGAACTGGTTC+AGG | + | chr3_1:70389959-70389978 | Msa0372080:CDS | 55.0% |
| TCCTGAACCAGTTCCGGTTC+AGG | - | chr3_1:70389963-70389982 | None:intergenic | 55.0% | |
| CTCAGGGAACGGAAAACTGG+TGG | + | chr3_1:70390209-70390228 | Msa0372080:CDS | 55.0% | |
| AGGGAACGGAAAACTGGTGG+TGG | + | chr3_1:70390212-70390231 | Msa0372080:CDS | 55.0% | |
| !! | CGGAAAACTGGTGGTGGTAG+TGG | + | chr3_1:70390218-70390237 | Msa0372080:CDS | 55.0% |
| !! | AGGAGCATTACCTCCAGGCA+AGG | + | chr3_1:70391764-70391783 | Msa0372080:CDS | 55.0% |
| CAGTTAGGACTTAGGAGGGG+GGG | + | chr3_1:70392650-70392669 | Msa0372080:intron | 55.0% | |
| ! | GGGGGGAGGAGTATAAGAGA+GGG | + | chr3_1:70392667-70392686 | Msa0372080:intron | 55.0% |
| GGGCTAGAGAAATGGTAGGG+GGG | + | chr3_1:70392687-70392706 | Msa0372080:intron | 55.0% | |
| GTAGGGGGGTGAAAAACTGG+TGG | + | chr3_1:70392701-70392720 | Msa0372080:intron | 55.0% | |
| ACTCCCCTGTTGGTCGTTAC+CGG | - | chr3_1:70393321-70393340 | None:intergenic | 55.0% | |
| GAGAGGAATTGGAGAGGCGG+CGG | - | chr3_1:70389538-70389557 | None:intergenic | 60.0% | |
| !! | TCGTTGGTGGTGGAGAGGAG+AGG | - | chr3_1:70389555-70389574 | None:intergenic | 60.0% |
| GGCTGCATTGTGGTCGTCGT+TGG | - | chr3_1:70389571-70389590 | None:intergenic | 60.0% | |
| CGGGAAGTGGAGTGTGAGTG+TGG | - | chr3_1:70389629-70389648 | None:intergenic | 60.0% | |
| TCGGGAACGGAATCGGGAAG+TGG | - | chr3_1:70389642-70389661 | None:intergenic | 60.0% | |
| CGGAACCGATGCAAGTGACG+TGG | - | chr3_1:70389767-70389786 | None:intergenic | 60.0% | |
| !! | ACTGGTGGTGGTAGTGGTGG+TGG | + | chr3_1:70390224-70390243 | Msa0372080:CDS | 60.0% |
| !! | TGGTGGTGGTGACGTAGACG+AGG | + | chr3_1:70390241-70390260 | Msa0372080:CDS | 60.0% |
| ! | TGGTGGTGACGTAGACGAGG+AGG | + | chr3_1:70390244-70390263 | Msa0372080:CDS | 60.0% |
| TTAGGACTTAGGAGGGGGGG+AGG | + | chr3_1:70392653-70392672 | Msa0372080:intron | 60.0% | |
| ! | GGGGGGGAGGAGTATAAGAG+AGG | + | chr3_1:70392666-70392685 | Msa0372080:intron | 60.0% |
| GGAATTGGAGAGGCGGCGGA+AGG | - | chr3_1:70389534-70389553 | None:intergenic | 65.0% | |
| !! | GGTCGTCGTTGGTGGTGGAG+AGG | - | chr3_1:70389560-70389579 | None:intergenic | 65.0% |
| !! | GGTGGTGGTAGTGGTGGTGG+TGG | + | chr3_1:70390227-70390246 | Msa0372080:CDS | 65.0% |
| GCGGCGAACACCGGTGACGA+CGG | - | chr3_1:70389499-70389518 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 70389483 | 70393552 | 70389483 | ID=Msa0372080;Name=Msa0372080 |
| chr3_1 | mRNA | 70389483 | 70393552 | 70389483 | ID=Msa0372080-mRNA-1;Parent=Msa0372080;Name=Msa0372080-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0.6|0.33|1|0.4|0.16|6|247|290 |
| chr3_1 | exon | 70389483 | 70389731 | 70389483 | ID=Msa0372080-mRNA-1:exon:15297;Parent=Msa0372080-mRNA-1 |
| chr3_1 | exon | 70389852 | 70390047 | 70389852 | ID=Msa0372080-mRNA-1:exon:15298;Parent=Msa0372080-mRNA-1 |
| chr3_1 | exon | 70390102 | 70390306 | 70390102 | ID=Msa0372080-mRNA-1:exon:15299;Parent=Msa0372080-mRNA-1 |
| chr3_1 | exon | 70391041 | 70391113 | 70391041 | ID=Msa0372080-mRNA-1:exon:15300;Parent=Msa0372080-mRNA-1 |
| chr3_1 | exon | 70391647 | 70391785 | 70391647 | ID=Msa0372080-mRNA-1:exon:15301;Parent=Msa0372080-mRNA-1 |
| chr3_1 | exon | 70393295 | 70393552 | 70393295 | ID=Msa0372080-mRNA-1:exon:15302;Parent=Msa0372080-mRNA-1 |
| chr3_1 | CDS | 70389483 | 70389731 | 70389483 | ID=Msa0372080-mRNA-1:cds;Parent=Msa0372080-mRNA-1 |
| chr3_1 | CDS | 70389852 | 70390047 | 70389852 | ID=Msa0372080-mRNA-1:cds;Parent=Msa0372080-mRNA-1 |
| chr3_1 | CDS | 70390102 | 70390306 | 70390102 | ID=Msa0372080-mRNA-1:cds;Parent=Msa0372080-mRNA-1 |
| chr3_1 | CDS | 70391041 | 70391113 | 70391041 | ID=Msa0372080-mRNA-1:cds;Parent=Msa0372080-mRNA-1 |
| chr3_1 | CDS | 70391647 | 70391785 | 70391647 | ID=Msa0372080-mRNA-1:cds;Parent=Msa0372080-mRNA-1 |
| chr3_1 | CDS | 70393295 | 70393305 | 70393295 | ID=Msa0372080-mRNA-1:cds;Parent=Msa0372080-mRNA-1 |
| chr3_1 | three_prime_UTR | 70393306 | 70393552 | 70393306 | ID=Msa0372080-mRNA-1:three_prime_utr;Parent=Msa0372080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
