AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0373020


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0373020 MtrunA17_Chr3g0121961 97.357 908 18 4 1 904 1 906 0.0 1808
Msa0373020 MtrunA17_Chr8g0377971 82.380 874 151 1 34 904 43 916 0.0 1503
Msa0373020 MtrunA17_Chr3g0118521 33.422 374 218 8 545 894 3 369 2.79e-51 184
Msa0373020 MtrunA17_Chr7g0252051 28.189 486 299 13 77 542 81 536 7.63e-50 185
Msa0373020 MtrunA17_Chr6g0461951 27.122 483 310 10 77 543 83 539 2.98e-46 174
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0373020 AT4G19710.2 78.002 841 183 1 64 904 78 916 0.0 1369
Msa0373020 AT1G31230.1 75.618 849 205 1 56 904 65 911 0.0 1319
Msa0373020 AT4G19710.1 76.873 761 174 1 64 824 78 836 0.0 1220
Msa0373020 AT5G21060.3 34.316 373 212 10 550 896 8 373 4.55e-52 187
Msa0373020 AT5G21060.1 33.867 375 209 11 550 896 8 371 4.59e-52 187
Msa0373020 AT5G21060.2 34.316 373 212 10 550 896 8 373 4.60e-52 187
Msa0373020 AT5G13280.1 28.597 549 331 16 24 542 27 544 1.95e-47 179
Msa0373020 AT3G02020.1 28.324 519 320 14 63 559 70 558 7.80e-47 177
Msa0373020 AT5G14060.1 27.586 493 303 13 73 542 81 542 3.77e-46 174
Msa0373020 AT5G14060.2 27.586 493 303 13 73 542 81 542 3.77e-46 174
Msa0373020 AT5G14060.3 29.134 381 239 9 73 442 81 441 8.16e-38 148

Find 205 sgRNAs with CRISPR-Local

Find 443 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATCGGTTCTTACTCTTAA+TGG 0.142845 3_1:-71946403 None:intergenic
GAAAACTCCTCGTCAAATTT+TGG 0.147615 3_1:-71946535 None:intergenic
ATAATTGGACCTGGATTAAT+TGG 0.182484 3_1:+71944201 Msa0373020:CDS
CAATTATGGGCGCGATATTC+AGG 0.184677 3_1:+71942349 Msa0373020:CDS
CATCTTGTGCAGTCTTATTT+TGG 0.195740 3_1:+71942783 Msa0373020:intron
TGACTTCTCCGCAGCAATTA+TGG 0.200786 3_1:+71942335 Msa0373020:CDS
AAAATATTCCTTATTATAAT+TGG 0.206918 3_1:-71942858 None:intergenic
AAAATACACTCTTCACTTAC+AGG 0.211167 3_1:+71940017 Msa0373020:CDS
ACCATGGCAATGGGCATAAT+TGG 0.214004 3_1:+71944186 Msa0373020:CDS
GGAGCTGGTCTTCCCATTAT+TGG 0.217397 3_1:+71945508 Msa0373020:CDS
CATTTCAAATTGCAGTATTT+TGG 0.217640 3_1:+71943608 Msa0373020:CDS
CCTTGTGTCCATCCATTTGC+AGG 0.225260 3_1:-71942139 None:intergenic
ACATGGTCAGTTCACAAATT+TGG 0.240332 3_1:+71940176 Msa0373020:CDS
TCAAGATGTTGGAAATTTAA+AGG 0.245840 3_1:+71940454 Msa0373020:CDS
CATCCATTTGCACAATTATC+TGG 0.247353 3_1:+71946769 Msa0373020:CDS
TTTGACAGCGCTTTGTTTGC+TGG 0.257116 3_1:+71943411 Msa0373020:CDS
TTCCCATTATTGGCACTTTA+CGG 0.257376 3_1:+71945518 Msa0373020:CDS
CTCTCTGCTTCTAGTATTTG+AGG 0.275251 3_1:+71945431 Msa0373020:intron
GGCAGCTGTTGGCCAGAAAA+TGG 0.279914 3_1:+71943629 Msa0373020:CDS
ACTGACCATGTTTCTCCTTT+TGG 0.282626 3_1:-71940164 None:intergenic
ACTGGAATGGCTGGTGTTCC+AGG 0.296123 3_1:+71943149 Msa0373020:CDS
TGTAAGTGAAGAGTGTATTT+TGG 0.296404 3_1:-71940015 None:intergenic
AACATTGATTTGCGTGTAAT+GGG 0.300206 3_1:+71944467 Msa0373020:CDS
TCCCATTATTGGCACTTTAC+GGG 0.305246 3_1:+71945519 Msa0373020:CDS
AAAAGGTGAAGCGGCTGATT+TGG 0.310156 3_1:+71944947 Msa0373020:CDS
CTGAACAGAGACTTAATAAA+TGG 0.319803 3_1:+71942220 Msa0373020:CDS
GCTAGAGCTTTCTGATATTC+CGG 0.325511 3_1:+71946360 Msa0373020:CDS
ATAATTCTTGCGAGGGAATC+TGG 0.325746 3_1:+71946331 Msa0373020:CDS
TTACGACTTGCTTCATATCT+TGG 0.328731 3_1:+71946904 Msa0373020:CDS
ATGGCATACCAATTATAATA+AGG 0.331452 3_1:+71942850 Msa0373020:CDS
GTAGCAATGATTACCTTAGA+TGG 0.335226 3_1:-71942255 None:intergenic
TCTTAGTGTAACATTAGTTC+TGG 0.347448 3_1:+71946997 Msa0373020:three_prime_UTR
GTACTCTCTTAATCCATCTA+AGG 0.351418 3_1:+71942242 Msa0373020:CDS
GTTCTTACTCTTAATGGTTC+CGG 0.356717 3_1:-71946397 None:intergenic
GCCCCGTAAAGTGCCAATAA+TGG 0.358952 3_1:-71945521 None:intergenic
TAAGCGAGAAGATTCTATAA+AGG 0.360058 3_1:+71944122 Msa0373020:CDS
TTGGCACTTGTAAATGTAGA+AGG 0.362262 3_1:+71942987 Msa0373020:CDS
GACTTCTCCGCAGCAATTAT+GGG 0.362658 3_1:+71942336 Msa0373020:CDS
TGCAAATTGAAGGAATCTTC+AGG 0.364806 3_1:+71945569 Msa0373020:CDS
AAACATTGATTTGCGTGTAA+TGG 0.370904 3_1:+71944466 Msa0373020:CDS
GTTTGCTGGGCGTATTTCTC+AGG 0.372575 3_1:+71943425 Msa0373020:CDS
TGTTCAGTTTCCAAGTAATC+AGG 0.373131 3_1:-71942204 None:intergenic
TATCAGAAAGCTCTAGCTTT+AGG 0.381405 3_1:-71946354 None:intergenic
TCATCACAAAGATTATATTA+TGG 0.390808 3_1:-71947134 None:intergenic
TGGAAAATGTGGAAGGGAAA+TGG 0.393165 3_1:-71939790 None:intergenic
TTGCATCTTTAATAACTTCA+AGG 0.396247 3_1:+71945836 Msa0373020:CDS
AAGAAAGGGATCAAATTAGA+TGG 0.403070 3_1:-71946975 None:intergenic
TTGACAGCGCTTTGTTTGCT+GGG 0.407848 3_1:+71943412 Msa0373020:CDS
GGTATGCCATAGCGAATAAC+AGG 0.407991 3_1:-71942837 None:intergenic
TCAAGTTGATCCTGATTACT+TGG 0.408876 3_1:+71942194 Msa0373020:CDS
GTGACTTGTGCACCAGCTCC+TGG 0.411867 3_1:-71946856 None:intergenic
CCCCGTAAAGTGCCAATAAT+GGG 0.412176 3_1:-71945520 None:intergenic
GGGCTCGTCAAGTCACCATT+TGG 0.412189 3_1:+71942370 Msa0373020:CDS
TGATGATTCTGAGAGAAAAT+TGG 0.414922 3_1:+71940256 Msa0373020:CDS
TCAAATTTGCATCAAGATGT+TGG 0.416184 3_1:+71940443 Msa0373020:CDS
AGAGAAATTCGAGAGGAAAA+AGG 0.432621 3_1:+71944930 Msa0373020:CDS
CTTGGTGAGTCTTTCCTCCA+TGG 0.434571 3_1:-71939990 None:intergenic
ACGGCACAAGAATTGTTTGA+TGG 0.436063 3_1:+71940398 Msa0373020:CDS
TGGATCACATTCACATTCAC+GGG 0.441993 3_1:-71939753 None:intergenic
CAAGAAGAGGCTGACACTGC+TGG 0.444680 3_1:+71946565 Msa0373020:CDS
CTTTGTGATGATATATATCT+TGG 0.444767 3_1:+71947146 Msa0373020:three_prime_UTR
AAAAGCAAAACAACACCATT+TGG 0.446657 3_1:-71939728 None:intergenic
TCCTTTACTGACTTAGTTGT+GGG 0.448104 3_1:+71941890 Msa0373020:CDS
AAAAGGGTGGCACTAACTCC+TGG 0.451346 3_1:-71943660 None:intergenic
TGAAGAGAAGCATAGCTTAA+CGG 0.451830 3_1:+71940379 Msa0373020:CDS
CAGAAAATGGCAAGTACTCC+AGG 0.457783 3_1:+71943642 Msa0373020:CDS
CAGTCTACTAAAACCGTGTT+TGG 0.459411 3_1:-71945008 None:intergenic
CATCCACAAGGCTGAAGCTC+AGG 0.460872 3_1:+71940325 Msa0373020:CDS
GGTAGACGTGACTAATCAAA+AGG 0.462124 3_1:+71946714 Msa0373020:CDS
TTACGGGGCCTTCTCGAAAC+CGG 0.462386 3_1:+71945535 Msa0373020:CDS
ATTTGACTTACAAATTATCA+AGG 0.464676 3_1:-71944514 None:intergenic
TACTTCTATGAAGCTACTGT+TGG 0.467919 3_1:+71945487 Msa0373020:CDS
GACAGATCATCCCTTGGATC+TGG 0.468935 3_1:-71945915 None:intergenic
GAGCCAGATAATTGTGCAAA+TGG 0.471377 3_1:-71946772 None:intergenic
TCTAAGGTAATCATTGCTAC+TGG 0.476290 3_1:+71942258 Msa0373020:CDS
CCCATTATTGGCACTTTACG+GGG 0.477220 3_1:+71945520 Msa0373020:CDS
ACCATCAACATCGGTCCAAA+TGG 0.477547 3_1:-71942385 None:intergenic
CCTGAGCCAATGCATTGAAA+AGG 0.477917 3_1:-71943677 None:intergenic
TCACAAACCACCATGGCAAT+GGG 0.479222 3_1:+71944177 Msa0373020:CDS
CAATGTTATTATGATATCTC+AGG 0.481310 3_1:+71943214 Msa0373020:CDS
CTCACTCACTCACTGCCAAA+TGG 0.481540 3_1:+71939713 Msa0373020:exon
AATAGAAGGATGGCAGATCT+TGG 0.482872 3_1:-71942901 None:intergenic
GGGAAATGGAGAAGAAAGAT+TGG 0.483371 3_1:-71939776 None:intergenic
AATCTTCTTCACATTCCCTC+AGG 0.486767 3_1:+71939835 Msa0373020:CDS
TTTAGCGCAGTAAAAGAGGT+TGG 0.488466 3_1:+71943188 Msa0373020:CDS
TGCGCAGCCAGTCATCATAA+TGG 0.489412 3_1:-71945055 None:intergenic
GACAAAATATTGCAAATTGA+AGG 0.491595 3_1:+71945559 Msa0373020:CDS
ATTAGTCCTGTTATTCGCTA+TGG 0.491955 3_1:+71942831 Msa0373020:CDS
ACTGACTTAGTTGTGGGACA+TGG 0.492278 3_1:+71941896 Msa0373020:CDS
GTGGATCACATTCACATTCA+CGG 0.493781 3_1:-71939754 None:intergenic
TTTGCGTGTAATGGGGATCA+TGG 0.494518 3_1:+71944475 Msa0373020:CDS
TAATGTTACACTAAGAAGAA+AGG 0.494640 3_1:-71946990 None:intergenic
CTTGTGTCCATCCATTTGCA+GGG 0.495349 3_1:-71942138 None:intergenic
AAAATAGTACTGGCGGTACC+TGG 0.498155 3_1:-71943167 None:intergenic
ATCCTTTACTGACTTAGTTG+TGG 0.498349 3_1:+71941889 Msa0373020:CDS
AATGTTACACTAAGAAGAAA+GGG 0.498554 3_1:-71946989 None:intergenic
AAAAGCTATAGCTGAGGTGT+TGG 0.501442 3_1:+71943380 Msa0373020:CDS
AGATTCTATAAAGGCTCTGC+GGG 0.501469 3_1:+71944131 Msa0373020:CDS
TATCCTGAGCTTCAGCCTTG+TGG 0.505692 3_1:-71940328 None:intergenic
ATCTTTAATAACTTCAAGGA+TGG 0.508110 3_1:+71945840 Msa0373020:CDS
ACCATTTGGACCGATGTTGA+TGG 0.508173 3_1:+71942384 Msa0373020:CDS
GTTGCTGAAGCAAAGGAAGC+AGG 0.509400 3_1:+71945882 Msa0373020:CDS
GATCCAAGGGATGATCTGTC+TGG 0.511718 3_1:+71945918 Msa0373020:CDS
ACTTGATCAGCTAAGGGATC+AGG 0.512149 3_1:+71944233 Msa0373020:CDS
TCCAATTATGCCCATTGCCA+TGG 0.512803 3_1:-71944187 None:intergenic
AATTATGGGCGCGATATTCA+GGG 0.512887 3_1:+71942350 Msa0373020:CDS
TTCAGTAGATGTAGCTGTAG+AGG 0.513353 3_1:+71940130 Msa0373020:intron
TCCGGTTGAAAATCTTGTGC+CGG 0.514423 3_1:+71946378 Msa0373020:CDS
GGTTTGTGAGTCATAAAATC+TGG 0.515634 3_1:-71944163 None:intergenic
CACTGTCTTATCAAGAGGCA+TGG 0.517169 3_1:+71942677 Msa0373020:CDS
ATCATAATGGCTTGCTATGG+CGG 0.519320 3_1:-71945042 None:intergenic
CTGACTTAGTTGTGGGACAT+GGG 0.523976 3_1:+71941897 Msa0373020:CDS
CTGAGCCAATGCATTGAAAA+GGG 0.524842 3_1:-71943676 None:intergenic
GCACACTACTTGATCAGCTA+AGG 0.525209 3_1:+71944226 Msa0373020:CDS
AGAAAGGGACTCCCTGCAAA+TGG 0.528240 3_1:+71942127 Msa0373020:intron
TGGAACTGACGTAGCAAGAA+AGG 0.528296 3_1:+71945938 Msa0373020:CDS
CCTCTGATAGTCCGTGGACC+AGG 0.529210 3_1:+71946838 Msa0373020:CDS
GAAGACACTGTCTTATCAAG+AGG 0.529922 3_1:+71942672 Msa0373020:CDS
CTCACAAACCACCATGGCAA+TGG 0.529985 3_1:+71944176 Msa0373020:CDS
ATAGTCCGTGGACCAGGAGC+TGG 0.530530 3_1:+71946844 Msa0373020:CDS
CAGATAATTGTGCAAATGGA+TGG 0.531821 3_1:-71946768 None:intergenic
TAATTGGACCTGGATTAATT+GGG 0.533041 3_1:+71944202 Msa0373020:CDS
CCATCTCTCTTGAGAGTAGT+GGG 0.533662 3_1:-71942309 None:intergenic
CTTTACAACGATAGACAACT+TGG 0.533740 3_1:+71942968 Msa0373020:CDS
TTGTTGTGGCGTGGAAAATG+TGG 0.534573 3_1:-71939801 None:intergenic
GTGCACCAGCTCCTGGTCCA+CGG 0.536145 3_1:-71946849 None:intergenic
TAGCAAGCCATTATGATGAC+TGG 0.539883 3_1:+71945048 Msa0373020:CDS
TATAGCAAGGATATTTATGT+TGG 0.541082 3_1:-71944061 None:intergenic
TATAGTGCAGATCCTAGAAA+AGG 0.542051 3_1:+71942411 Msa0373020:CDS
ATATTAAAAGATTATGTCAA+AGG 0.543405 3_1:+71942945 Msa0373020:CDS
TGAGGTTAAGAGCTCTTCAA+AGG 0.543432 3_1:+71945449 Msa0373020:CDS
AATTATGCCCATTGCCATGG+TGG 0.544162 3_1:-71944184 None:intergenic
TCCCACAACTAAGTCAGTAA+AGG 0.544287 3_1:-71941891 None:intergenic
TTGTGGGACATGGGGAGCTG+TGG 0.547165 3_1:+71941906 Msa0373020:CDS
TTATTGCAGGGGAATCGACT+TGG 0.547464 3_1:+71944899 Msa0373020:intron
TGGTCAGTTCACAAATTTGG+TGG 0.549254 3_1:+71940179 Msa0373020:CDS
TCCATCTCTCTTGAGAGTAG+TGG 0.550339 3_1:-71942310 None:intergenic
GTGAGTCATAAAATCTGGAA+TGG 0.551255 3_1:-71944158 None:intergenic
TATGAAGCTACTGTTGGAGC+TGG 0.552013 3_1:+71945493 Msa0373020:CDS
TGAGGTAGTTGCTGAAGCAA+AGG 0.555717 3_1:+71945875 Msa0373020:CDS
GGGGAATCGACTTGGTAAAG+TGG 0.555762 3_1:+71944907 Msa0373020:intron
TTATGATGACTGGCTGCGCA+AGG 0.556068 3_1:+71945058 Msa0373020:CDS
AGGGACTCCCTGCAAATGGA+TGG 0.556923 3_1:+71942131 Msa0373020:CDS
AGTGTGCTCCCAATTAATCC+AGG 0.560803 3_1:-71944210 None:intergenic
GCTGGTGCACAAGTCACAGC+TGG 0.561903 3_1:+71946862 Msa0373020:CDS
CCCACTACTCTCAAGAGAGA+TGG 0.565006 3_1:+71942309 Msa0373020:CDS
GTCATCATAATGGCTTGCTA+TGG 0.567164 3_1:-71945045 None:intergenic
TTATCAAGAGGCATGGGAGA+TGG 0.567207 3_1:+71942684 Msa0373020:CDS
GGTATTGAGATACGTGGGAG+TGG 0.569260 3_1:+71946693 Msa0373020:intron
ATGCTTCAAGCTATTGACAT+AGG 0.569687 3_1:+71940479 Msa0373020:CDS
CCTGCAAATGGATGGACACA+AGG 0.574446 3_1:+71942139 Msa0373020:CDS
ACAGGTGATAATTCTTGCGA+GGG 0.575424 3_1:+71946324 Msa0373020:intron
CTGAGATATCATAATAACAT+TGG 0.576835 3_1:-71943213 None:intergenic
AAATGGAGAAGAAAGATTGG+TGG 0.577922 3_1:-71939773 None:intergenic
AACAACCTTGTGCTATAGCA+AGG 0.580471 3_1:-71944074 None:intergenic
TTGCGTGTAATGGGGATCAT+GGG 0.583341 3_1:+71944476 Msa0373020:CDS
GGTGCACAAGTCACAGCTGG+TGG 0.583364 3_1:+71946865 Msa0373020:CDS
TACAGGTGATAATTCTTGCG+AGG 0.589324 3_1:+71946323 Msa0373020:intron
CGTGACTAATCAAAAGGGAA+TGG 0.593201 3_1:+71946720 Msa0373020:CDS
GTTCCAGACAGATCATCCCT+TGG 0.593893 3_1:-71945921 None:intergenic
AGCATTGAAGATTAACTACA+AGG 0.595661 3_1:+71947062 Msa0373020:three_prime_UTR
GCAATGGGCATAATTGGACC+TGG 0.598231 3_1:+71944192 Msa0373020:CDS
CAAATTTGGTGGAACATGTG+TGG 0.600704 3_1:+71940190 Msa0373020:CDS
TGACTTAGTTGTGGGACATG+GGG 0.601011 3_1:+71941898 Msa0373020:CDS
ACTGTCTTATCAAGAGGCAT+GGG 0.602739 3_1:+71942678 Msa0373020:CDS
CACACTACTTGATCAGCTAA+GGG 0.604044 3_1:+71944227 Msa0373020:CDS
GTTATACTGAACCAGATCCA+AGG 0.604842 3_1:+71945904 Msa0373020:CDS
CCTGGTCCACGGACTATCAG+AGG 0.606662 3_1:-71946838 None:intergenic
TATGATGACTGGCTGCGCAA+GGG 0.608656 3_1:+71945059 Msa0373020:CDS
GGAATGTGAAGAAGATTGAA+AGG 0.609635 3_1:-71939829 None:intergenic
ATTGAAAGGTGAAGTTGTTG+TGG 0.609959 3_1:-71939815 None:intergenic
AAATCATGTTATACCAAACA+CGG 0.611522 3_1:+71944995 Msa0373020:CDS
GTAGACGTGACTAATCAAAA+GGG 0.615782 3_1:+71946715 Msa0373020:CDS
ATCGTGTTTACCTCACTAAG+TGG 0.617311 3_1:-71945122 None:intergenic
TGGCACTTGTAAATGTAGAA+GGG 0.620113 3_1:+71942988 Msa0373020:CDS
TTGAAGGTATTGAGATACGT+GGG 0.620162 3_1:+71946688 Msa0373020:intron
AAATTTGGTGGAACATGTGT+GGG 0.623160 3_1:+71940191 Msa0373020:CDS
TTATACTGAACCAGATCCAA+GGG 0.626685 3_1:+71945905 Msa0373020:CDS
TCAACTTGATCATCACGAGT+AGG 0.630309 3_1:-71942180 None:intergenic
ACATTGATTTGCGTGTAATG+GGG 0.630578 3_1:+71944468 Msa0373020:CDS
AGAAGTAAAAGCTATAGCTG+AGG 0.635029 3_1:+71943374 Msa0373020:CDS
AAGGTGAAGTTGTTGTGGCG+TGG 0.636050 3_1:-71939810 None:intergenic
GATCTTGGTTCCAGAAGCAG+AGG 0.638422 3_1:-71942886 None:intergenic
CACGAGTAGGATTTACAATG+AGG 0.639826 3_1:-71942167 None:intergenic
AAATTCAGGACCACTTAGTG+AGG 0.640316 3_1:+71945112 Msa0373020:CDS
AAATTTGTTCAAAATGTACA+CGG 0.641865 3_1:+71944972 Msa0373020:CDS
AATATCCTTGCTATAGCACA+AGG 0.642453 3_1:+71944069 Msa0373020:CDS
CATCAGCCTCTGATAGTCCG+TGG 0.643633 3_1:+71946832 Msa0373020:CDS
TTTGAAGGTATTGAGATACG+TGG 0.650454 3_1:+71946687 Msa0373020:intron
CGAGCTACGAAGATACAAGA+AGG 0.652358 3_1:+71946744 Msa0373020:CDS
AGCCAATGCATTGAAAAGGG+TGG 0.652774 3_1:-71943673 None:intergenic
TGTGGCGTGGAAAATGTGGA+AGG 0.659056 3_1:-71939797 None:intergenic
CTGCAAATGGATGGACACAA+GGG 0.659166 3_1:+71942140 Msa0373020:CDS
AGCTACCAAAAGGAGAAACA+TGG 0.661800 3_1:+71940159 Msa0373020:CDS
TGATTCTGAGAGAAAATTGG+TGG 0.666882 3_1:+71940259 Msa0373020:CDS
ATAACAGGACTAATTGTGCG+TGG 0.667475 3_1:-71942822 None:intergenic
ACTATACACACCATCAACAT+CGG 0.667842 3_1:-71942394 None:intergenic
GTGGCGTGGAAAATGTGGAA+GGG 0.670336 3_1:-71939796 None:intergenic
AAGATTCTATAAAGGCTCTG+CGG 0.671564 3_1:+71944130 Msa0373020:CDS
AAAGTGGAGAGAAATTCGAG+AGG 0.681138 3_1:+71944923 Msa0373020:CDS
TTATGACTCACAAACCACCA+TGG 0.683309 3_1:+71944170 Msa0373020:CDS
GATGTATGATCTCATCCACA+AGG 0.691167 3_1:+71940313 Msa0373020:CDS
GAAATTACCAAAATTTGACG+AGG 0.695620 3_1:+71946528 Msa0373020:CDS
TATCGCGCCCATAATTGCTG+CGG 0.698799 3_1:-71942343 None:intergenic
GGATCACATTCACATTCACG+GGG 0.741804 3_1:-71939752 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATAAAATTTAAAAAATTT+CGG + chr3_1:71941011-71941030 Msa0373020:intron 0.0%
!! TAAATAAATAGATAGTTATT+TGG - chr3_1:71940968-71940987 None:intergenic 10.0%
!! AAAATATTCCTTATTATAAT+TGG - chr3_1:71942861-71942880 None:intergenic 10.0%
!! TTTGTAGTATTTAGTAAAAT+TGG - chr3_1:71940828-71940847 None:intergenic 15.0%
!! AAAAAGAAAAGACAATAATT+AGG - chr3_1:71941661-71941680 None:intergenic 15.0%
!! ATATTAAAAGATTATGTCAA+AGG + chr3_1:71942945-71942964 Msa0373020:CDS 15.0%
!! TATTCTAAACTTAACAAAAA+CGG - chr3_1:71943719-71943738 None:intergenic 15.0%
!!! ATTCACAAATTATTCTTTTT+GGG + chr3_1:71945385-71945404 Msa0373020:intron 15.0%
!! AATTATAAGTTATAAGCTAC+AGG - chr3_1:71940699-71940718 None:intergenic 20.0%
!! AATAGATAGTTATTTGGTTA+AGG - chr3_1:71940962-71940981 None:intergenic 20.0%
!!! TAAAAAATTTCGGCTTTATT+TGG + chr3_1:71941021-71941040 Msa0373020:intron 20.0%
!!! GAAGTGTTTAGTAAAATTAA+CGG + chr3_1:71941100-71941119 Msa0373020:intron 20.0%
!!! AACGACAAATATTTTTGATA+TGG + chr3_1:71941573-71941592 Msa0373020:intron 20.0%
!!! TATTAAGTGTGTTATTAGTT+GGG - chr3_1:71941845-71941864 None:intergenic 20.0%
!!! TATTTTTTATCTTAACCCTA+TGG - chr3_1:71942057-71942076 None:intergenic 20.0%
!!! TCTTCATTTTCAATAATAGA+AGG - chr3_1:71942918-71942937 None:intergenic 20.0%
!!! AAGGAAATGTTTTAATATGT+TGG + chr3_1:71943977-71943996 Msa0373020:intron 20.0%
!!! TGCTTTCAAGTATTATAAAT+TGG + chr3_1:71944304-71944323 Msa0373020:intron 20.0%
!! ACAAATGTTATGTTTATGTA+GGG + chr3_1:71944358-71944377 Msa0373020:intron 20.0%
!!! ATTTGACTTACAAATTATCA+AGG - chr3_1:71944517-71944536 None:intergenic 20.0%
!! CTCTATTAGTCATATTAATT+TGG + chr3_1:71944845-71944864 Msa0373020:intron 20.0%
!!! AAATTTGTTCAAAATGTACA+CGG + chr3_1:71944972-71944991 Msa0373020:CDS 20.0%
!!! GATTCACAAATTATTCTTTT+TGG + chr3_1:71945384-71945403 Msa0373020:intron 20.0%
!!! AAATTAAAAGTACCAATTCA+AGG + chr3_1:71945727-71945746 Msa0373020:intron 20.0%
!!! GAAATTGTCAGTATATTTTT+GGG + chr3_1:71947084-71947103 Msa0373020:three_prime_UTR 20.0%
!! TCATCACAAAGATTATATTA+TGG - chr3_1:71947137-71947156 None:intergenic 20.0%
! ATATATGTGGTATATAGTCA+AGG - chr3_1:71939893-71939912 None:intergenic 25.0%
! AAACAAGAAAATGTTATGCA+GGG - chr3_1:71939954-71939973 None:intergenic 25.0%
! AAAACAAGAAAATGTTATGC+AGG - chr3_1:71939955-71939974 None:intergenic 25.0%
! TCAAGATGTTGGAAATTTAA+AGG + chr3_1:71940454-71940473 Msa0373020:CDS 25.0%
!! CTTTATTTGGTAAAAAGTAG+TGG + chr3_1:71941034-71941053 Msa0373020:intron 25.0%
!! AAATATGCATGCTTTTCTTA+GGG - chr3_1:71941284-71941303 None:intergenic 25.0%
!! TAAATATGCATGCTTTTCTT+AGG - chr3_1:71941285-71941304 None:intergenic 25.0%
!!! GATGAATTTTTTGTGATCAA+AGG + chr3_1:71941337-71941356 Msa0373020:intron 25.0%
! TGTTTAGATTTCATGATTGA+TGG + chr3_1:71941402-71941421 Msa0373020:intron 25.0%
! ACCTTAGGTCTAAATAAAAA+GGG - chr3_1:71941611-71941630 None:intergenic 25.0%
! TTGCCTTACTTAAAATTCTT+TGG + chr3_1:71941693-71941712 Msa0373020:intron 25.0%
! CCAAAATATTAAGCTTAACA+TGG - chr3_1:71941759-71941778 None:intergenic 25.0%
!! CCATGTTAAGCTTAATATTT+TGG + chr3_1:71941756-71941775 Msa0373020:intron 25.0%
!! TGTTGCTTAAAAGAAATTTC+TGG + chr3_1:71941810-71941829 Msa0373020:intron 25.0%
!! GTATTAAGTGTGTTATTAGT+TGG - chr3_1:71941846-71941865 None:intergenic 25.0%
!!! ATTGTCTTTTGTTGTTAAGA+AGG + chr3_1:71941940-71941959 Msa0373020:CDS 25.0%
! TAAATGAAGAATAAATGCCA+TGG - chr3_1:71942536-71942555 None:intergenic 25.0%
!! GTTAATCTCCTGAATTTTAA+GGG - chr3_1:71942753-71942772 None:intergenic 25.0%
!! AGTTAATCTCCTGAATTTTA+AGG - chr3_1:71942754-71942773 None:intergenic 25.0%
! ATGGCATACCAATTATAATA+AGG + chr3_1:71942850-71942869 Msa0373020:CDS 25.0%
!! CATTTTCAATAATAGAAGGA+TGG - chr3_1:71942914-71942933 None:intergenic 25.0%
! CATTATAGTCTACAACATTT+GGG - chr3_1:71943103-71943122 None:intergenic 25.0%
! ACATTATAGTCTACAACATT+TGG - chr3_1:71943104-71943123 None:intergenic 25.0%
!!! ATTGTTTTGTTTTGTAGAAC+TGG + chr3_1:71943131-71943150 Msa0373020:intron 25.0%
! CTGAGATATCATAATAACAT+TGG - chr3_1:71943216-71943235 None:intergenic 25.0%
! CAATGTTATTATGATATCTC+AGG + chr3_1:71943214-71943233 Msa0373020:CDS 25.0%
! TGAACAAAAGAAGAAGAATT+TGG - chr3_1:71943502-71943521 None:intergenic 25.0%
!! CATTTCAAATTGCAGTATTT+TGG + chr3_1:71943608-71943627 Msa0373020:CDS 25.0%
! CTAAAGTAATAGAATTTCGA+TGG + chr3_1:71943811-71943830 Msa0373020:intron 25.0%
! AAATCAGGTGAAATACATTA+AGG + chr3_1:71943905-71943924 Msa0373020:intron 25.0%
! AAATACATTAAGGAAGAAGA+GGG + chr3_1:71943915-71943934 Msa0373020:intron 25.0%
! AAGATATCAAAGAAAGATGA+AGG + chr3_1:71943958-71943977 Msa0373020:intron 25.0%
!!! TCATTTGTCTAACTTGTTTA+TGG + chr3_1:71944016-71944035 Msa0373020:intron 25.0%
! TATAGCAAGGATATTTATGT+TGG - chr3_1:71944064-71944083 None:intergenic 25.0%
! CTACATAAACATAACATTTG+TGG - chr3_1:71944359-71944378 None:intergenic 25.0%
! CACAAATGTTATGTTTATGT+AGG + chr3_1:71944357-71944376 Msa0373020:intron 25.0%
!! TATGAATTAATCCATCGATT+GGG - chr3_1:71944405-71944424 None:intergenic 25.0%
! ATATGAATTAATCCATCGAT+TGG - chr3_1:71944406-71944425 None:intergenic 25.0%
!!! CATATAACATTTTTTCATGC+AGG + chr3_1:71944421-71944440 Msa0373020:intron 25.0%
! CCAAAAAGTTAAAGTGAAAA+GGG - chr3_1:71944698-71944717 None:intergenic 25.0%
! ACCAAAAAGTTAAAGTGAAA+AGG - chr3_1:71944699-71944718 None:intergenic 25.0%
!!! TTTCACTTTAACTTTTTGGT+AGG + chr3_1:71944699-71944718 Msa0373020:intron 25.0%
! AACTATAGTTTCTTATTGCA+GGG + chr3_1:71944887-71944906 Msa0373020:intron 25.0%
! AAATCATGTTATACCAAACA+CGG + chr3_1:71944995-71945014 Msa0373020:CDS 25.0%
!! AATTTGCAATATTTTGTCAC+CGG - chr3_1:71945557-71945576 None:intergenic 25.0%
! GACAAAATATTGCAAATTGA+AGG + chr3_1:71945559-71945578 Msa0373020:CDS 25.0%
! GATAATGATAATCCTTGAAT+TGG - chr3_1:71945742-71945761 None:intergenic 25.0%
! TTGCATCTTTAATAACTTCA+AGG + chr3_1:71945836-71945855 Msa0373020:CDS 25.0%
! ATCTTTAATAACTTCAAGGA+TGG + chr3_1:71945840-71945859 Msa0373020:CDS 25.0%
! AAAACTGTGAGAAAAAAATG+TGG - chr3_1:71945990-71946009 None:intergenic 25.0%
! CAAGCTTATACATAAATTTG+AGG - chr3_1:71946067-71946086 None:intergenic 25.0%
!! ATTTGATTTCAAGCTTAGAA+TGG + chr3_1:71946107-71946126 Msa0373020:intron 25.0%
!! GTGTATTTCAAATGTTTCTA+AGG - chr3_1:71946156-71946175 None:intergenic 25.0%
!!! AAATACACAAGTTGATTTCA+TGG + chr3_1:71946168-71946187 Msa0373020:intron 25.0%
! TACTATAATGACAGATTTCT+TGG + chr3_1:71946250-71946269 Msa0373020:intron 25.0%
! AACTGCATAATTCATGAAAT+CGG - chr3_1:71946422-71946441 None:intergenic 25.0%
!!! ATACATTGTTGATTTTATGC+AGG + chr3_1:71946477-71946496 Msa0373020:intron 25.0%
!! TGGAAAAACTAATAGTTTGT+AGG - chr3_1:71946621-71946640 None:intergenic 25.0%
! ATACTATGAAGAAAATGTCA+TGG - chr3_1:71946644-71946663 None:intergenic 25.0%
! AGAACATTTGTAATGTTTGA+AGG + chr3_1:71946672-71946691 Msa0373020:intron 25.0%
! AATGTTACACTAAGAAGAAA+GGG - chr3_1:71946992-71947011 None:intergenic 25.0%
! TAATGTTACACTAAGAAGAA+AGG - chr3_1:71946993-71947012 None:intergenic 25.0%
!! GGAAATTGTCAGTATATTTT+TGG + chr3_1:71947083-71947102 Msa0373020:three_prime_UTR 25.0%
! CTTTGTGATGATATATATCT+TGG + chr3_1:71947146-71947165 Msa0373020:three_prime_UTR 25.0%
AAAAGCAAAACAACACCATT+TGG - chr3_1:71939731-71939750 None:intergenic 30.0%
GTAAAAGAAAAGATACCTGA+GGG - chr3_1:71939853-71939872 None:intergenic 30.0%
AGTAAAAGAAAAGATACCTG+AGG - chr3_1:71939854-71939873 None:intergenic 30.0%
AACAAGAAAATGTTATGCAG+GGG - chr3_1:71939953-71939972 None:intergenic 30.0%
!!! TTCTTGCTTTTAGTTTACCA+TGG + chr3_1:71939973-71939992 Msa0373020:intron 30.0%
!! TGTAAGTGAAGAGTGTATTT+TGG - chr3_1:71940018-71940037 None:intergenic 30.0%
AAAATACACTCTTCACTTAC+AGG + chr3_1:71940017-71940036 Msa0373020:CDS 30.0%
! TGATGATTCTGAGAGAAAAT+TGG + chr3_1:71940256-71940275 Msa0373020:CDS 30.0%
TCAAATTTGCATCAAGATGT+TGG + chr3_1:71940443-71940462 Msa0373020:CDS 30.0%
ACAACTAAAATAGACCTGTT+TGG + chr3_1:71940587-71940606 Msa0373020:intron 30.0%
CAACTAAAATAGACCTGTTT+GGG + chr3_1:71940588-71940607 Msa0373020:intron 30.0%
AACTAAAATAGACCTGTTTG+GGG + chr3_1:71940589-71940608 Msa0373020:intron 30.0%
AATAAATCAATACCCCAAAC+AGG - chr3_1:71940604-71940623 None:intergenic 30.0%
! CACAAATAAGCTAGTTGATA+GGG - chr3_1:71940870-71940889 None:intergenic 30.0%
ACACAAATAAGCTAGTTGAT+AGG - chr3_1:71940871-71940890 None:intergenic 30.0%
!! TATTTGGTTAAGGCTTTGTT+TGG - chr3_1:71940952-71940971 None:intergenic 30.0%
ATTTGCAAAGAGCAAAAAGT+AGG - chr3_1:71941239-71941258 None:intergenic 30.0%
! AATATGCATGCTTTTCTTAG+GGG - chr3_1:71941283-71941302 None:intergenic 30.0%
TTCATTTCTTTCATCATGCA+TGG + chr3_1:71941441-71941460 Msa0373020:intron 30.0%
!! TCCCTTTTTATTTAGACCTA+AGG + chr3_1:71941607-71941626 Msa0373020:intron 30.0%
GACCTTAGGTCTAAATAAAA+AGG - chr3_1:71941612-71941631 None:intergenic 30.0%
GACAATAATTAGGAGTTAAC+AGG - chr3_1:71941651-71941670 None:intergenic 30.0%
!! CAGCCAAAGAATTTTAAGTA+AGG - chr3_1:71941699-71941718 None:intergenic 30.0%
TACTTAAAATTCTTTGGCTG+AGG + chr3_1:71941699-71941718 Msa0373020:intron 30.0%
!! AGAAGGTATGTTCAAGTTTT+AGG + chr3_1:71941957-71941976 Msa0373020:intron 30.0%
AGTCCTAGTAATCCAAAATT+TGG - chr3_1:71942020-71942039 None:intergenic 30.0%
CTGAACAGAGACTTAATAAA+TGG + chr3_1:71942220-71942239 Msa0373020:CDS 30.0%
CATCATATAATATCCACTGA+TGG - chr3_1:71942471-71942490 None:intergenic 30.0%
CATCAGTGGATATTATATGA+TGG + chr3_1:71942469-71942488 Msa0373020:intron 30.0%
ACTTATATCGATACATACCA+TGG + chr3_1:71942516-71942535 Msa0373020:intron 30.0%
!!! TTTGTTTTGTAGAACTGGAA+TGG + chr3_1:71943136-71943155 Msa0373020:intron 30.0%
!!! TATTTTTAGCGCAGTAAAAG+AGG + chr3_1:71943184-71943203 Msa0373020:CDS 30.0%
ATGTAACTGTGGATAAACAA+GGG - chr3_1:71943268-71943287 None:intergenic 30.0%
ATGTTTAACTGTGTTTGTGA+AGG + chr3_1:71943311-71943330 Msa0373020:intron 30.0%
! ATAGCTTTTACTTCTTTCTC+AGG - chr3_1:71943369-71943388 None:intergenic 30.0%
!!! AGTTGTTTTTTGACAAGAAG+TGG - chr3_1:71943546-71943565 None:intergenic 30.0%
! TAGATACCTTTTAATGTCCA+GGG - chr3_1:71943848-71943867 None:intergenic 30.0%
! ATAGATACCTTTTAATGTCC+AGG - chr3_1:71943849-71943868 None:intergenic 30.0%
AGAGAAACAAGACTTAAATC+AGG + chr3_1:71943890-71943909 Msa0373020:intron 30.0%
GAAATACATTAAGGAAGAAG+AGG + chr3_1:71943914-71943933 Msa0373020:intron 30.0%
AATACATTAAGGAAGAAGAG+GGG + chr3_1:71943916-71943935 Msa0373020:intron 30.0%
GTCAAACTTGTAAATGAAAC+AGG + chr3_1:71944038-71944057 Msa0373020:intron 30.0%
TAAGCGAGAAGATTCTATAA+AGG + chr3_1:71944122-71944141 Msa0373020:CDS 30.0%
ATAATTGGACCTGGATTAAT+TGG + chr3_1:71944201-71944220 Msa0373020:CDS 30.0%
TAATTGGACCTGGATTAATT+GGG + chr3_1:71944202-71944221 Msa0373020:CDS 30.0%
!! AAACATTGATTTGCGTGTAA+TGG + chr3_1:71944466-71944485 Msa0373020:CDS 30.0%
!! AACATTGATTTGCGTGTAAT+GGG + chr3_1:71944467-71944486 Msa0373020:CDS 30.0%
GTTAATTCCTTAGCATTCAA+GGG - chr3_1:71944555-71944574 None:intergenic 30.0%
TGTTAATTCCTTAGCATTCA+AGG - chr3_1:71944556-71944575 None:intergenic 30.0%
AATCGCTTAATCAACAATGA+AGG + chr3_1:71944580-71944599 Msa0373020:intron 30.0%
!! CCCTTTTCACTTTAACTTTT+TGG + chr3_1:71944695-71944714 Msa0373020:intron 30.0%
! AAAGAACTTTTCCTATCAAC+AGG - chr3_1:71944770-71944789 None:intergenic 30.0%
GAACTATAGTTTCTTATTGC+AGG + chr3_1:71944886-71944905 Msa0373020:intron 30.0%
ACTATAGTTTCTTATTGCAG+GGG + chr3_1:71944888-71944907 Msa0373020:intron 30.0%
! TGAATTTGCCTTTTTATTGG+GGG - chr3_1:71945099-71945118 None:intergenic 30.0%
! CTGAATTTGCCTTTTTATTG+GGG - chr3_1:71945100-71945119 None:intergenic 30.0%
! CCTGAATTTGCCTTTTTATT+GGG - chr3_1:71945101-71945120 None:intergenic 30.0%
! TCCTGAATTTGCCTTTTTAT+TGG - chr3_1:71945102-71945121 None:intergenic 30.0%
! TAGTAATGAGTGTGTTATTC+AGG - chr3_1:71945361-71945380 None:intergenic 30.0%
TTTATTTGTCCCTTGAACAA+GGG - chr3_1:71945710-71945729 None:intergenic 30.0%
ATTTATTTGTCCCTTGAACA+AGG - chr3_1:71945711-71945730 None:intergenic 30.0%
ATCTTATGCTTTCAAACTGA+AGG + chr3_1:71945781-71945800 Msa0373020:intron 30.0%
! TATTACTTCTGATTTTGCAG+TGG + chr3_1:71945804-71945823 Msa0373020:intron 30.0%
! ATTACTTCTGATTTTGCAGT+GGG + chr3_1:71945805-71945824 Msa0373020:intron 30.0%
!! CACTTAGCTTTAAATTTCTG+TGG + chr3_1:71946297-71946316 Msa0373020:intron 30.0%
! TTAAATTTCTGTGGTTCTAC+AGG + chr3_1:71946306-71946325 Msa0373020:intron 30.0%
! AAATCGGTTCTTACTCTTAA+TGG - chr3_1:71946406-71946425 None:intergenic 30.0%
! ATGTACTTTTGCACTAAACA+TGG + chr3_1:71946454-71946473 Msa0373020:intron 30.0%
GAAATTACCAAAATTTGACG+AGG + chr3_1:71946528-71946547 Msa0373020:CDS 30.0%
CAAAAAGACAGTATCTAAGA+CGG - chr3_1:71946934-71946953 None:intergenic 30.0%
AAGAAAGGGATCAAATTAGA+TGG - chr3_1:71946978-71946997 None:intergenic 30.0%
TCTTAGTGTAACATTAGTTC+TGG + chr3_1:71946997-71947016 Msa0373020:three_prime_UTR 30.0%
! AGCATTGAAGATTAACTACA+AGG + chr3_1:71947062-71947081 Msa0373020:three_prime_UTR 30.0%
AAATGGAGAAGAAAGATTGG+TGG - chr3_1:71939776-71939795 None:intergenic 35.0%
ATTGAAAGGTGAAGTTGTTG+TGG - chr3_1:71939818-71939837 None:intergenic 35.0%
GGAATGTGAAGAAGATTGAA+AGG - chr3_1:71939832-71939851 None:intergenic 35.0%
GAGATTGTTGAGCATATATG+TGG - chr3_1:71939906-71939925 None:intergenic 35.0%
!!! TTGCTTTTAGTTTACCATGG+AGG + chr3_1:71939976-71939995 Msa0373020:intron 35.0%
!!! GAAGAGTGTATTTTGGTTCT+TGG - chr3_1:71940011-71940030 None:intergenic 35.0%
GAGGAAAAAAAGCTACCAAA+AGG + chr3_1:71940149-71940168 Msa0373020:CDS 35.0%
ACATGGTCAGTTCACAAATT+TGG + chr3_1:71940176-71940195 Msa0373020:CDS 35.0%
! AAATTTGGTGGAACATGTGT+GGG + chr3_1:71940191-71940210 Msa0373020:CDS 35.0%
! TGATTCTGAGAGAAAATTGG+TGG + chr3_1:71940259-71940278 Msa0373020:CDS 35.0%
! TGAAGAGAAGCATAGCTTAA+CGG + chr3_1:71940379-71940398 Msa0373020:CDS 35.0%
ATGCTTCAAGCTATTGACAT+AGG + chr3_1:71940479-71940498 Msa0373020:CDS 35.0%
AAAGAAGCAGAACAAAAGAG+AGG - chr3_1:71940509-71940528 None:intergenic 35.0%
!! AAGTAGAAGCTAGTTGATAG+TGG - chr3_1:71940925-71940944 None:intergenic 35.0%
!! TGGTAAAAAGTAGTGGATGA+TGG + chr3_1:71941041-71941060 Msa0373020:intron 35.0%
! GCAAAACTGTTAGCTTATAG+TGG - chr3_1:71941189-71941208 None:intergenic 35.0%
AAAAGTAGGTACAGACACTA+AGG - chr3_1:71941225-71941244 None:intergenic 35.0%
! GCATGCATATTTACCTGTTT+TGG + chr3_1:71941292-71941311 Msa0373020:intron 35.0%
TGCTGAACAAGAAATACTGT+TGG - chr3_1:71941500-71941519 None:intergenic 35.0%
ATTAGGAGTTAACAGGATCA+CGG - chr3_1:71941644-71941663 None:intergenic 35.0%
!! ATCCTTTACTGACTTAGTTG+TGG + chr3_1:71941889-71941908 Msa0373020:CDS 35.0%
!! TCCTTTACTGACTTAGTTGT+GGG + chr3_1:71941890-71941909 Msa0373020:CDS 35.0%
TAGGTAGAACAATTCTTAGC+CGG + chr3_1:71941976-71941995 Msa0373020:intron 35.0%
!! TCAAGTTGATCCTGATTACT+TGG + chr3_1:71942194-71942213 Msa0373020:CDS 35.0%
TGTTCAGTTTCCAAGTAATC+AGG - chr3_1:71942207-71942226 None:intergenic 35.0%
GTACTCTCTTAATCCATCTA+AGG + chr3_1:71942242-71942261 Msa0373020:CDS 35.0%
GTAGCAATGATTACCTTAGA+TGG - chr3_1:71942258-71942277 None:intergenic 35.0%
! TCTAAGGTAATCATTGCTAC+TGG + chr3_1:71942258-71942277 Msa0373020:CDS 35.0%
ACTATACACACCATCAACAT+CGG - chr3_1:71942397-71942416 None:intergenic 35.0%
TATAGTGCAGATCCTAGAAA+AGG + chr3_1:71942411-71942430 Msa0373020:CDS 35.0%
! AAGCAGAACAAACCTTTTCT+AGG - chr3_1:71942426-71942445 None:intergenic 35.0%
AAAATCACAGCATCACTAAC+TGG - chr3_1:71942652-71942671 None:intergenic 35.0%
TTCTTGTGCCCTTAAAATTC+AGG + chr3_1:71942742-71942761 Msa0373020:intron 35.0%
!!! CATCTTGTGCAGTCTTATTT+TGG + chr3_1:71942783-71942802 Msa0373020:intron 35.0%
ATTAGTCCTGTTATTCGCTA+TGG + chr3_1:71942831-71942850 Msa0373020:CDS 35.0%
CTTTACAACGATAGACAACT+TGG + chr3_1:71942968-71942987 Msa0373020:CDS 35.0%
TTGGCACTTGTAAATGTAGA+AGG + chr3_1:71942987-71943006 Msa0373020:CDS 35.0%
TGGCACTTGTAAATGTAGAA+GGG + chr3_1:71942988-71943007 Msa0373020:CDS 35.0%
TACTGCGCTAAAAATAGTAC+TGG - chr3_1:71943180-71943199 None:intergenic 35.0%
CATGTAACTGTGGATAAACA+AGG - chr3_1:71943269-71943288 None:intergenic 35.0%
CAGTTTCATACATGTAACTG+TGG - chr3_1:71943279-71943298 None:intergenic 35.0%
AGAAGTAAAAGCTATAGCTG+AGG + chr3_1:71943374-71943393 Msa0373020:CDS 35.0%
TGTTATAGCAGAATTGGAGT+TGG - chr3_1:71943453-71943472 None:intergenic 35.0%
GCATGTTGTTATAGCAGAAT+TGG - chr3_1:71943459-71943478 None:intergenic 35.0%
AAAGTATGTAACCACTTCTC+AGG + chr3_1:71943578-71943597 Msa0373020:intron 35.0%
! AGATACCTTTTAATGTCCAG+GGG - chr3_1:71943847-71943866 None:intergenic 35.0%
! AATATCCTTGCTATAGCACA+AGG + chr3_1:71944069-71944088 Msa0373020:CDS 35.0%
AAGATTCTATAAAGGCTCTG+CGG + chr3_1:71944130-71944149 Msa0373020:CDS 35.0%
GTGAGTCATAAAATCTGGAA+TGG - chr3_1:71944161-71944180 None:intergenic 35.0%
GGTTTGTGAGTCATAAAATC+TGG - chr3_1:71944166-71944185 None:intergenic 35.0%
!! ACATTGATTTGCGTGTAATG+GGG + chr3_1:71944468-71944487 Msa0373020:CDS 35.0%
GACATCAGTTAACAAATTCC+AGG - chr3_1:71944809-71944828 None:intergenic 35.0%
AGAGAAATTCGAGAGGAAAA+AGG + chr3_1:71944930-71944949 Msa0373020:CDS 35.0%
TGTTATCACCCCCAATAAAA+AGG + chr3_1:71945088-71945107 Msa0373020:CDS 35.0%
CCCAATAAAAAGGCAAATTC+AGG + chr3_1:71945098-71945117 Msa0373020:CDS 35.0%
ACAGCAAGGTTACATAACAA+TGG - chr3_1:71945161-71945180 None:intergenic 35.0%
! TATGTTGATTGAAGACAGCA+AGG - chr3_1:71945175-71945194 None:intergenic 35.0%
TACTTCTATGAAGCTACTGT+TGG + chr3_1:71945487-71945506 Msa0373020:CDS 35.0%
TTCCCATTATTGGCACTTTA+CGG + chr3_1:71945518-71945537 Msa0373020:CDS 35.0%
TGCAAATTGAAGGAATCTTC+AGG + chr3_1:71945569-71945588 Msa0373020:CDS 35.0%
TGATCCACAAAAAAGACAAG+TGG - chr3_1:71945621-71945640 None:intergenic 35.0%
CAACTACCTCACTAAAAACT+CGG - chr3_1:71945866-71945885 None:intergenic 35.0%
TTATACTGAACCAGATCCAA+GGG + chr3_1:71945905-71945924 Msa0373020:CDS 35.0%
ACAACAAACTACCACACATT+TGG - chr3_1:71946025-71946044 None:intergenic 35.0%
!! TACACAAGTTGATTTCATGG+TGG + chr3_1:71946171-71946190 Msa0373020:intron 35.0%
! CATGCAATGTGCATATTTTG+AGG - chr3_1:71946204-71946223 None:intergenic 35.0%
ATGATTTCATGAGAACTAGC+TGG + chr3_1:71946221-71946240 Msa0373020:intron 35.0%
!! TATCAGAAAGCTCTAGCTTT+AGG - chr3_1:71946357-71946376 None:intergenic 35.0%
GTTCTTACTCTTAATGGTTC+CGG - chr3_1:71946400-71946419 None:intergenic 35.0%
! GAAAACTCCTCGTCAAATTT+TGG - chr3_1:71946538-71946557 None:intergenic 35.0%
! GTTTTCAAAGAGACAAGAAG+AGG + chr3_1:71946552-71946571 Msa0373020:CDS 35.0%
TGAGTAACTAGACAGTATTC+TGG + chr3_1:71946593-71946612 Msa0373020:intron 35.0%
CTATGAAGAAAATGTCATGG+TGG - chr3_1:71946641-71946660 None:intergenic 35.0%
!! TTTGAAGGTATTGAGATACG+TGG + chr3_1:71946687-71946706 Msa0373020:intron 35.0%
!! TTGAAGGTATTGAGATACGT+GGG + chr3_1:71946688-71946707 Msa0373020:intron 35.0%
GTAGACGTGACTAATCAAAA+GGG + chr3_1:71946715-71946734 Msa0373020:CDS 35.0%
CAGATAATTGTGCAAATGGA+TGG - chr3_1:71946771-71946790 None:intergenic 35.0%
CATCCATTTGCACAATTATC+TGG + chr3_1:71946769-71946788 Msa0373020:CDS 35.0%
! TTACGACTTGCTTCATATCT+TGG + chr3_1:71946904-71946923 Msa0373020:CDS 35.0%
TGGATCACATTCACATTCAC+GGG - chr3_1:71939756-71939775 None:intergenic 40.0%
GTGGATCACATTCACATTCA+CGG - chr3_1:71939757-71939776 None:intergenic 40.0%
GGGAAATGGAGAAGAAAGAT+TGG - chr3_1:71939779-71939798 None:intergenic 40.0%
TGGAAAATGTGGAAGGGAAA+TGG - chr3_1:71939793-71939812 None:intergenic 40.0%
AATCTTCTTCACATTCCCTC+AGG + chr3_1:71939835-71939854 Msa0373020:CDS 40.0%
TTCAGTAGATGTAGCTGTAG+AGG + chr3_1:71940130-71940149 Msa0373020:intron 40.0%
AGCTACCAAAAGGAGAAACA+TGG + chr3_1:71940159-71940178 Msa0373020:CDS 40.0%
! ACTGACCATGTTTCTCCTTT+TGG - chr3_1:71940167-71940186 None:intergenic 40.0%
TGGTCAGTTCACAAATTTGG+TGG + chr3_1:71940179-71940198 Msa0373020:CDS 40.0%
! CAAATTTGGTGGAACATGTG+TGG + chr3_1:71940190-71940209 Msa0373020:CDS 40.0%
GATGTATGATCTCATCCACA+AGG + chr3_1:71940313-71940332 Msa0373020:CDS 40.0%
ACGGCACAAGAATTGTTTGA+TGG + chr3_1:71940398-71940417 Msa0373020:CDS 40.0%
TCTTTAGTCTCTGTCTCGTA+AGG + chr3_1:71940532-71940551 Msa0373020:intron 40.0%
ACGATCAAAGTAGAGCAACT+TGG - chr3_1:71941142-71941161 None:intergenic 40.0%
!! TACAGACACTAAGGCACTTT+TGG - chr3_1:71941216-71941235 None:intergenic 40.0%
TTGGTGTACTTGTGTGCATA+TGG + chr3_1:71941311-71941330 Msa0373020:intron 40.0%
GATCAAAGGAGTTTCTGTCT+TGG + chr3_1:71941351-71941370 Msa0373020:intron 40.0%
!! CGTGGAAGAGCATTACAAAA+AGG + chr3_1:71941542-71941561 Msa0373020:intron 40.0%
AACAGGATCACGGTTAAGAA+AGG - chr3_1:71941634-71941653 None:intergenic 40.0%
TCCCACAACTAAGTCAGTAA+AGG - chr3_1:71941894-71941913 None:intergenic 40.0%
TAATCCAAAATTTGGCCGAG+AGG - chr3_1:71942012-71942031 None:intergenic 40.0%
! CGGCCAAATTTTGGATTACT+AGG + chr3_1:71942014-71942033 Msa0373020:intron 40.0%
TGATTTCCCTGAGAACCATA+GGG + chr3_1:71942039-71942058 Msa0373020:intron 40.0%
TCTTAACCCTATGGTTCTCA+GGG - chr3_1:71942048-71942067 None:intergenic 40.0%
ATCTTAACCCTATGGTTCTC+AGG - chr3_1:71942049-71942068 None:intergenic 40.0%
TTCCTTTCTACTGTGCAGAA+AGG + chr3_1:71942111-71942130 Msa0373020:intron 40.0%
TCCTTTCTACTGTGCAGAAA+GGG + chr3_1:71942112-71942131 Msa0373020:intron 40.0%
CACGAGTAGGATTTACAATG+AGG - chr3_1:71942170-71942189 None:intergenic 40.0%
TCAACTTGATCATCACGAGT+AGG - chr3_1:71942183-71942202 None:intergenic 40.0%
!! AGAGTAGTGGGAATGTTTTG+AGG - chr3_1:71942300-71942319 None:intergenic 40.0%
AATTATGGGCGCGATATTCA+GGG + chr3_1:71942350-71942369 Msa0373020:CDS 40.0%
! CTGCTTCTTATTTCATGTGC+TGG + chr3_1:71942440-71942459 Msa0373020:intron 40.0%
GAAGACACTGTCTTATCAAG+AGG + chr3_1:71942672-71942691 Msa0373020:CDS 40.0%
! ACTGTCTTATCAAGAGGCAT+GGG + chr3_1:71942678-71942697 Msa0373020:CDS 40.0%
ATAACAGGACTAATTGTGCG+TGG - chr3_1:71942825-71942844 None:intergenic 40.0%
! ATTTTCAACACCTCTGCTTC+TGG + chr3_1:71942876-71942895 Msa0373020:CDS 40.0%
AATAGAAGGATGGCAGATCT+TGG - chr3_1:71942904-71942923 None:intergenic 40.0%
! TTTTGTAGAACTGGAATGGC+TGG + chr3_1:71943140-71943159 Msa0373020:intron 40.0%
! TGCGCTAAAAATAGTACTGG+CGG - chr3_1:71943177-71943196 None:intergenic 40.0%
TTTAGCGCAGTAAAAGAGGT+TGG + chr3_1:71943188-71943207 Msa0373020:CDS 40.0%
AACTGTGGATAAACAAGGGA+GGG - chr3_1:71943264-71943283 None:intergenic 40.0%
TAACTGTGGATAAACAAGGG+AGG - chr3_1:71943265-71943284 None:intergenic 40.0%
AAAAGCTATAGCTGAGGTGT+TGG + chr3_1:71943380-71943399 Msa0373020:CDS 40.0%
CTGAGCCAATGCATTGAAAA+GGG - chr3_1:71943679-71943698 None:intergenic 40.0%
AACAACCTTGTGCTATAGCA+AGG - chr3_1:71944077-71944096 None:intergenic 40.0%
AGATTCTATAAAGGCTCTGC+GGG + chr3_1:71944131-71944150 Msa0373020:CDS 40.0%
TTATGACTCACAAACCACCA+TGG + chr3_1:71944170-71944189 Msa0373020:CDS 40.0%
CACACTACTTGATCAGCTAA+GGG + chr3_1:71944227-71944246 Msa0373020:CDS 40.0%
TAGGGATCCAACAAGCATAA+TGG + chr3_1:71944376-71944395 Msa0373020:intron 40.0%
GCTAAATCCCTTGAATGCTA+AGG + chr3_1:71944545-71944564 Msa0373020:intron 40.0%
ACAGGTGAATATCGAGAGTA+AGG - chr3_1:71944752-71944771 None:intergenic 40.0%
CTCGATATTCACCTGTTGAT+AGG + chr3_1:71944756-71944775 Msa0373020:intron 40.0%
AAAGTGGAGAGAAATTCGAG+AGG + chr3_1:71944923-71944942 Msa0373020:CDS 40.0%
CAGTCTACTAAAACCGTGTT+TGG - chr3_1:71945011-71945030 None:intergenic 40.0%
!! ATCATAATGGCTTGCTATGG+CGG - chr3_1:71945045-71945064 None:intergenic 40.0%
!! GTCATCATAATGGCTTGCTA+TGG - chr3_1:71945048-71945067 None:intergenic 40.0%
TAGCAAGCCATTATGATGAC+TGG + chr3_1:71945048-71945067 Msa0373020:CDS 40.0%
AAATTCAGGACCACTTAGTG+AGG + chr3_1:71945112-71945131 Msa0373020:CDS 40.0%
ATCGTGTTTACCTCACTAAG+TGG - chr3_1:71945125-71945144 None:intergenic 40.0%
AAATTGAGATCCCATACCAG+TGG + chr3_1:71945213-71945232 Msa0373020:intron 40.0%
ACAACATTTGCCACTGGTAT+GGG - chr3_1:71945226-71945245 None:intergenic 40.0%
AACAACATTTGCCACTGGTA+TGG - chr3_1:71945227-71945246 None:intergenic 40.0%
ATACCAGTGGCAAATGTTGT+TGG + chr3_1:71945226-71945245 Msa0373020:intron 40.0%
AAACCAACAACATTTGCCAC+TGG - chr3_1:71945232-71945251 None:intergenic 40.0%
CTCTCTGCTTCTAGTATTTG+AGG + chr3_1:71945431-71945450 Msa0373020:intron 40.0%
TGAGGTTAAGAGCTCTTCAA+AGG + chr3_1:71945449-71945468 Msa0373020:CDS 40.0%
TCCCATTATTGGCACTTTAC+GGG + chr3_1:71945519-71945538 Msa0373020:CDS 40.0%
!!! TCCTCCACTTGTCTTTTTTG+TGG + chr3_1:71945614-71945633 Msa0373020:intron 40.0%
TCCACAAAAAAGACAAGTGG+AGG - chr3_1:71945618-71945637 None:intergenic 40.0%
! GAAAAGTGTGGATAGACAGT+TGG - chr3_1:71945688-71945707 None:intergenic 40.0%
! CACACTTTTCCCTTGTTCAA+GGG + chr3_1:71945698-71945717 Msa0373020:intron 40.0%
GTTATACTGAACCAGATCCA+AGG + chr3_1:71945904-71945923 Msa0373020:CDS 40.0%
GTCGAATTAAGCCAAATGTG+TGG + chr3_1:71946011-71946030 Msa0373020:intron 40.0%
TACAGGTGATAATTCTTGCG+AGG + chr3_1:71946323-71946342 Msa0373020:intron 40.0%
ACAGGTGATAATTCTTGCGA+GGG + chr3_1:71946324-71946343 Msa0373020:intron 40.0%
ATAATTCTTGCGAGGGAATC+TGG + chr3_1:71946331-71946350 Msa0373020:CDS 40.0%
GCTAGAGCTTTCTGATATTC+CGG + chr3_1:71946360-71946379 Msa0373020:CDS 40.0%
GGTAGACGTGACTAATCAAA+AGG + chr3_1:71946714-71946733 Msa0373020:CDS 40.0%
CGTGACTAATCAAAAGGGAA+TGG + chr3_1:71946720-71946739 Msa0373020:CDS 40.0%
GAGCCAGATAATTGTGCAAA+TGG - chr3_1:71946775-71946794 None:intergenic 40.0%
GGATCACATTCACATTCACG+GGG - chr3_1:71939755-71939774 None:intergenic 45.0%
TTGTTGTGGCGTGGAAAATG+TGG - chr3_1:71939804-71939823 None:intergenic 45.0%
!! ACACTAAGGCACTTTTGGCA+AGG - chr3_1:71941211-71941230 None:intergenic 45.0%
GCACACAAGTACACCAAAAC+AGG - chr3_1:71941308-71941327 None:intergenic 45.0%
CACGGTTAAGAAAGGACCTT+AGG - chr3_1:71941626-71941645 None:intergenic 45.0%
CACACTTAATACCTTGCAGC+TGG + chr3_1:71941854-71941873 Msa0373020:intron 45.0%
! ACTGACTTAGTTGTGGGACA+TGG + chr3_1:71941896-71941915 Msa0373020:CDS 45.0%
CTGACTTAGTTGTGGGACAT+GGG + chr3_1:71941897-71941916 Msa0373020:CDS 45.0%
TGACTTAGTTGTGGGACATG+GGG + chr3_1:71941898-71941917 Msa0373020:CDS 45.0%
! CTTACCTCTCGGCCAAATTT+TGG + chr3_1:71942005-71942024 Msa0373020:intron 45.0%
CTGATTTCCCTGAGAACCAT+AGG + chr3_1:71942038-71942057 Msa0373020:intron 45.0%
TCCCTTTCTGCACAGTAGAA+AGG - chr3_1:71942116-71942135 None:intergenic 45.0%
CTTGTGTCCATCCATTTGCA+GGG - chr3_1:71942141-71942160 None:intergenic 45.0%
CTGCAAATGGATGGACACAA+GGG + chr3_1:71942140-71942159 Msa0373020:CDS 45.0%
CCATCTCTCTTGAGAGTAGT+GGG - chr3_1:71942312-71942331 None:intergenic 45.0%
TCCATCTCTCTTGAGAGTAG+TGG - chr3_1:71942313-71942332 None:intergenic 45.0%
TGACTTCTCCGCAGCAATTA+TGG + chr3_1:71942335-71942354 Msa0373020:CDS 45.0%
GACTTCTCCGCAGCAATTAT+GGG + chr3_1:71942336-71942355 Msa0373020:CDS 45.0%
CAATTATGGGCGCGATATTC+AGG + chr3_1:71942349-71942368 Msa0373020:CDS 45.0%
ACCATTTGGACCGATGTTGA+TGG + chr3_1:71942384-71942403 Msa0373020:CDS 45.0%
ACCATCAACATCGGTCCAAA+TGG - chr3_1:71942388-71942407 None:intergenic 45.0%
!! TGTGCTGGTTTAACCATCAG+TGG + chr3_1:71942455-71942474 Msa0373020:intron 45.0%
CACTGTCTTATCAAGAGGCA+TGG + chr3_1:71942677-71942696 Msa0373020:CDS 45.0%
! TTATCAAGAGGCATGGGAGA+TGG + chr3_1:71942684-71942703 Msa0373020:CDS 45.0%
GTAAGTTGCACACTGGATAG+TGG + chr3_1:71942706-71942725 Msa0373020:intron 45.0%
GGTATGCCATAGCGAATAAC+AGG - chr3_1:71942840-71942859 None:intergenic 45.0%
!! AAAATAGTACTGGCGGTACC+TGG - chr3_1:71943170-71943189 None:intergenic 45.0%
GGGAGGGAAACAACAAAAAC+TGG - chr3_1:71943248-71943267 None:intergenic 45.0%
!! TTTGACAGCGCTTTGTTTGC+TGG + chr3_1:71943411-71943430 Msa0373020:CDS 45.0%
!! TTGACAGCGCTTTGTTTGCT+GGG + chr3_1:71943412-71943431 Msa0373020:CDS 45.0%
AATGACTGCAACCTGAGAAG+TGG - chr3_1:71943592-71943611 None:intergenic 45.0%
!!! TGCAGTATTTTGGCAGCTGT+TGG + chr3_1:71943618-71943637 Msa0373020:CDS 45.0%
!!! CTGGAGTACTTGCCATTTTC+TGG - chr3_1:71943644-71943663 None:intergenic 45.0%
CAGAAAATGGCAAGTACTCC+AGG + chr3_1:71943642-71943661 Msa0373020:CDS 45.0%
! TGCCACCCTTTTCAATGCAT+TGG + chr3_1:71943671-71943690 Msa0373020:CDS 45.0%
AGCCAATGCATTGAAAAGGG+TGG - chr3_1:71943676-71943695 None:intergenic 45.0%
CCTGAGCCAATGCATTGAAA+AGG - chr3_1:71943680-71943699 None:intergenic 45.0%
!!! CCTTTTCAATGCATTGGCTC+AGG + chr3_1:71943677-71943696 Msa0373020:CDS 45.0%
TCACAAACCACCATGGCAAT+GGG + chr3_1:71944177-71944196 Msa0373020:CDS 45.0%
AATTATGCCCATTGCCATGG+TGG - chr3_1:71944187-71944206 None:intergenic 45.0%
ACCATGGCAATGGGCATAAT+TGG + chr3_1:71944186-71944205 Msa0373020:CDS 45.0%
TCCAATTATGCCCATTGCCA+TGG - chr3_1:71944190-71944209 None:intergenic 45.0%
AGTGTGCTCCCAATTAATCC+AGG - chr3_1:71944213-71944232 None:intergenic 45.0%
GCACACTACTTGATCAGCTA+AGG + chr3_1:71944226-71944245 Msa0373020:CDS 45.0%
ACTTGATCAGCTAAGGGATC+AGG + chr3_1:71944233-71944252 Msa0373020:CDS 45.0%
TGGGAAGCCATTATGCTTGT+TGG - chr3_1:71944386-71944405 None:intergenic 45.0%
CATAATGGCTTCCCAATCGA+TGG + chr3_1:71944391-71944410 Msa0373020:intron 45.0%
! TTTGCGTGTAATGGGGATCA+TGG + chr3_1:71944475-71944494 Msa0373020:CDS 45.0%
! TTGCGTGTAATGGGGATCAT+GGG + chr3_1:71944476-71944495 Msa0373020:CDS 45.0%
!! TCACAGCGATAAGGGTACTT+TGG - chr3_1:71944725-71944744 None:intergenic 45.0%
AAGGAGAGTCACAGCGATAA+GGG - chr3_1:71944733-71944752 None:intergenic 45.0%
TAAGGAGAGTCACAGCGATA+AGG - chr3_1:71944734-71944753 None:intergenic 45.0%
TTGATATGCAGTGTGCATCC+TGG + chr3_1:71944788-71944807 Msa0373020:intron 45.0%
TTATTGCAGGGGAATCGACT+TGG + chr3_1:71944899-71944918 Msa0373020:intron 45.0%
TCGAGAGGAAAAAGGTGAAG+CGG + chr3_1:71944938-71944957 Msa0373020:CDS 45.0%
AAAAGGTGAAGCGGCTGATT+TGG + chr3_1:71944947-71944966 Msa0373020:CDS 45.0%
TAAACACGATGTCCTTTCGC+TGG + chr3_1:71945135-71945154 Msa0373020:intron 45.0%
ACATAACAATGGCCAGCGAA+AGG - chr3_1:71945150-71945169 None:intergenic 45.0%
TATGAAGCTACTGTTGGAGC+TGG + chr3_1:71945493-71945512 Msa0373020:CDS 45.0%
! CCCCGTAAAGTGCCAATAAT+GGG - chr3_1:71945523-71945542 None:intergenic 45.0%
CCCATTATTGGCACTTTACG+GGG + chr3_1:71945520-71945539 Msa0373020:CDS 45.0%
!!! TTTTGTCACCGGTTTCGAGA+AGG - chr3_1:71945546-71945565 None:intergenic 45.0%
CCTTGAACAAGGGAAAAGTG+TGG - chr3_1:71945700-71945719 None:intergenic 45.0%
! CCACACTTTTCCCTTGTTCA+AGG + chr3_1:71945697-71945716 Msa0373020:intron 45.0%
TGAGGTAGTTGCTGAAGCAA+AGG + chr3_1:71945875-71945894 Msa0373020:CDS 45.0%
TGGAACTGACGTAGCAAGAA+AGG + chr3_1:71945938-71945957 Msa0373020:CDS 45.0%
TCCGGTTGAAAATCTTGTGC+CGG + chr3_1:71946378-71946397 Msa0373020:CDS 45.0%
! TCCGGCACAAGATTTTCAAC+CGG - chr3_1:71946382-71946401 None:intergenic 45.0%
CGAGCTACGAAGATACAAGA+AGG + chr3_1:71946744-71946763 Msa0373020:CDS 45.0%
CTCACTCACTCACTGCCAAA+TGG + chr3_1:71939713-71939732 Msa0373020:exon 50.0%
GTGGCGTGGAAAATGTGGAA+GGG - chr3_1:71939799-71939818 None:intergenic 50.0%
TGTGGCGTGGAAAATGTGGA+AGG - chr3_1:71939800-71939819 None:intergenic 50.0%
AAGGTGAAGTTGTTGTGGCG+TGG - chr3_1:71939813-71939832 None:intergenic 50.0%
CTTGGTGAGTCTTTCCTCCA+TGG - chr3_1:71939993-71940012 None:intergenic 50.0%
TATCCTGAGCTTCAGCCTTG+TGG - chr3_1:71940331-71940350 None:intergenic 50.0%
ACAGACATGTGCAGTTGACG+TGG + chr3_1:71941524-71941543 Msa0373020:intron 50.0%
GCCGGACTTTACTTACCTCT+CGG + chr3_1:71941994-71942013 Msa0373020:intron 50.0%
GCCGAGAGGTAAGTAAAGTC+CGG - chr3_1:71941998-71942017 None:intergenic 50.0%
AGAAAGGGACTCCCTGCAAA+TGG + chr3_1:71942127-71942146 Msa0373020:intron 50.0%
CCTTGTGTCCATCCATTTGC+AGG - chr3_1:71942142-71942161 None:intergenic 50.0%
CCTGCAAATGGATGGACACA+AGG + chr3_1:71942139-71942158 Msa0373020:CDS 50.0%
CCCACTACTCTCAAGAGAGA+TGG + chr3_1:71942309-71942328 Msa0373020:CDS 50.0%
TATCGCGCCCATAATTGCTG+CGG - chr3_1:71942346-71942365 None:intergenic 50.0%
GGAGATGGTAAGTTGCACAC+TGG + chr3_1:71942699-71942718 Msa0373020:intron 50.0%
GATCTTGGTTCCAGAAGCAG+AGG - chr3_1:71942889-71942908 None:intergenic 50.0%
! GTTTGCTGGGCGTATTTCTC+AGG + chr3_1:71943425-71943444 Msa0373020:CDS 50.0%
AAAAGGGTGGCACTAACTCC+TGG - chr3_1:71943663-71943682 None:intergenic 50.0%
ACCAGCCCCTGGACATTAAA+AGG + chr3_1:71943839-71943858 Msa0373020:intron 50.0%
! ACCTTTTAATGTCCAGGGGC+TGG - chr3_1:71943843-71943862 None:intergenic 50.0%
CTCACAAACCACCATGGCAA+TGG + chr3_1:71944176-71944195 Msa0373020:CDS 50.0%
GCAATGGGCATAATTGGACC+TGG + chr3_1:71944192-71944211 Msa0373020:CDS 50.0%
!! GGGGAATCGACTTGGTAAAG+TGG + chr3_1:71944907-71944926 Msa0373020:intron 50.0%
TGCGCAGCCAGTCATCATAA+TGG - chr3_1:71945058-71945077 None:intergenic 50.0%
! TTATGATGACTGGCTGCGCA+AGG + chr3_1:71945058-71945077 Msa0373020:CDS 50.0%
! TATGATGACTGGCTGCGCAA+GGG + chr3_1:71945059-71945078 Msa0373020:CDS 50.0%
!! GGAGCTGGTCTTCCCATTAT+TGG + chr3_1:71945508-71945527 Msa0373020:CDS 50.0%
! GCCCCGTAAAGTGCCAATAA+TGG - chr3_1:71945524-71945543 None:intergenic 50.0%
!!! GGATGGCCGAGTTTTTAGTG+AGG + chr3_1:71945857-71945876 Msa0373020:CDS 50.0%
GTTGCTGAAGCAAAGGAAGC+AGG + chr3_1:71945882-71945901 Msa0373020:CDS 50.0%
GACAGATCATCCCTTGGATC+TGG - chr3_1:71945918-71945937 None:intergenic 50.0%
GATCCAAGGGATGATCTGTC+TGG + chr3_1:71945918-71945937 Msa0373020:CDS 50.0%
GTTCCAGACAGATCATCCCT+TGG - chr3_1:71945924-71945943 None:intergenic 50.0%
! GGTATTGAGATACGTGGGAG+TGG + chr3_1:71946693-71946712 Msa0373020:intron 50.0%
CATCCACAAGGCTGAAGCTC+AGG + chr3_1:71940325-71940344 Msa0373020:CDS 55.0%
CTGTAGCATGACCAGCTGCA+AGG - chr3_1:71941868-71941887 None:intergenic 55.0%
AGGGACTCCCTGCAAATGGA+TGG + chr3_1:71942131-71942150 Msa0373020:CDS 55.0%
GGGCTCGTCAAGTCACCATT+TGG + chr3_1:71942370-71942389 Msa0373020:CDS 55.0%
ACTGGAATGGCTGGTGTTCC+AGG + chr3_1:71943149-71943168 Msa0373020:CDS 55.0%
GGCAGCTGTTGGCCAGAAAA+TGG + chr3_1:71943629-71943648 Msa0373020:CDS 55.0%
TTACGGGGCCTTCTCGAAAC+CGG + chr3_1:71945535-71945554 Msa0373020:CDS 55.0%
CAAGAAGAGGCTGACACTGC+TGG + chr3_1:71946565-71946584 Msa0373020:CDS 55.0%
CATCAGCCTCTGATAGTCCG+TGG + chr3_1:71946832-71946851 Msa0373020:CDS 55.0%
TTGTGGGACATGGGGAGCTG+TGG + chr3_1:71941906-71941925 Msa0373020:CDS 60.0%
!! CGATGGACTATACCAGCCCC+TGG + chr3_1:71943828-71943847 Msa0373020:intron 60.0%
! CCTGGTCCACGGACTATCAG+AGG - chr3_1:71946841-71946860 None:intergenic 60.0%
CCTCTGATAGTCCGTGGACC+AGG + chr3_1:71946838-71946857 Msa0373020:CDS 60.0%
ATAGTCCGTGGACCAGGAGC+TGG + chr3_1:71946844-71946863 Msa0373020:CDS 60.0%
! GTGACTTGTGCACCAGCTCC+TGG - chr3_1:71946859-71946878 None:intergenic 60.0%
GCTGGTGCACAAGTCACAGC+TGG + chr3_1:71946862-71946881 Msa0373020:CDS 60.0%
GGTGCACAAGTCACAGCTGG+TGG + chr3_1:71946865-71946884 Msa0373020:CDS 60.0%
GTGCACCAGCTCCTGGTCCA+CGG - chr3_1:71946852-71946871 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 71939668 71947186 71939668 ID=Msa0373020;Name=Msa0373020
chr3_1 mRNA 71939668 71947186 71939668 ID=Msa0373020-mRNA-1;Parent=Msa0373020;Name=Msa0373020-mRNA-1;_AED=0.13;_eAED=0.13;_QI=64|0.94|0.94|1|1|1|18|247|904
chr3_1 exon 71939668 71939856 71939668 ID=Msa0373020-mRNA-1:exon:15870;Parent=Msa0373020-mRNA-1
chr3_1 exon 71939986 71940038 71939986 ID=Msa0373020-mRNA-1:exon:15871;Parent=Msa0373020-mRNA-1
chr3_1 exon 71940135 71940500 71940135 ID=Msa0373020-mRNA-1:exon:15872;Parent=Msa0373020-mRNA-1
chr3_1 exon 71941873 71941961 71941873 ID=Msa0373020-mRNA-1:exon:15873;Parent=Msa0373020-mRNA-1
chr3_1 exon 71942129 71942432 71942129 ID=Msa0373020-mRNA-1:exon:15874;Parent=Msa0373020-mRNA-1
chr3_1 exon 71942653 71942705 71942653 ID=Msa0373020-mRNA-1:exon:15875;Parent=Msa0373020-mRNA-1
chr3_1 exon 71942795 71943009 71942795 ID=Msa0373020-mRNA-1:exon:15876;Parent=Msa0373020-mRNA-1
chr3_1 exon 71943148 71943235 71943148 ID=Msa0373020-mRNA-1:exon:15877;Parent=Msa0373020-mRNA-1
chr3_1 exon 71943333 71943446 71943333 ID=Msa0373020-mRNA-1:exon:15878;Parent=Msa0373020-mRNA-1
chr3_1 exon 71943600 71943698 71943600 ID=Msa0373020-mRNA-1:exon:15879;Parent=Msa0373020-mRNA-1
chr3_1 exon 71944060 71944254 71944060 ID=Msa0373020-mRNA-1:exon:15880;Parent=Msa0373020-mRNA-1
chr3_1 exon 71944443 71944525 71944443 ID=Msa0373020-mRNA-1:exon:15881;Parent=Msa0373020-mRNA-1
chr3_1 exon 71944908 71945133 71944908 ID=Msa0373020-mRNA-1:exon:15882;Parent=Msa0373020-mRNA-1
chr3_1 exon 71945445 71945590 71945445 ID=Msa0373020-mRNA-1:exon:15883;Parent=Msa0373020-mRNA-1
chr3_1 exon 71945824 71945959 71945824 ID=Msa0373020-mRNA-1:exon:15884;Parent=Msa0373020-mRNA-1
chr3_1 exon 71946328 71946411 71946328 ID=Msa0373020-mRNA-1:exon:15885;Parent=Msa0373020-mRNA-1
chr3_1 exon 71946499 71946591 71946499 ID=Msa0373020-mRNA-1:exon:15886;Parent=Msa0373020-mRNA-1
chr3_1 exon 71946694 71947186 71946694 ID=Msa0373020-mRNA-1:exon:15887;Parent=Msa0373020-mRNA-1
chr3_1 five_prime_UTR 71939668 71939731 71939668 ID=Msa0373020-mRNA-1:five_prime_utr;Parent=Msa0373020-mRNA-1
chr3_1 CDS 71939732 71939856 71939732 ID=Msa0373020-mRNA-1:cds;Parent=Msa0373020-mRNA-1
chr3_1 CDS 71939986 71940038 71939986 ID=Msa0373020-mRNA-1:cds;Parent=Msa0373020-mRNA-1
chr3_1 CDS 71940135 71940500 71940135 ID=Msa0373020-mRNA-1:cds;Parent=Msa0373020-mRNA-1
chr3_1 CDS 71941873 71941961 71941873 ID=Msa0373020-mRNA-1:cds;Parent=Msa0373020-mRNA-1
chr3_1 CDS 71942129 71942432 71942129 ID=Msa0373020-mRNA-1:cds;Parent=Msa0373020-mRNA-1
chr3_1 CDS 71942653 71942705 71942653 ID=Msa0373020-mRNA-1:cds;Parent=Msa0373020-mRNA-1
chr3_1 CDS 71942795 71943009 71942795 ID=Msa0373020-mRNA-1:cds;Parent=Msa0373020-mRNA-1
chr3_1 CDS 71943148 71943235 71943148 ID=Msa0373020-mRNA-1:cds;Parent=Msa0373020-mRNA-1
chr3_1 CDS 71943333 71943446 71943333 ID=Msa0373020-mRNA-1:cds;Parent=Msa0373020-mRNA-1
chr3_1 CDS 71943600 71943698 71943600 ID=Msa0373020-mRNA-1:cds;Parent=Msa0373020-mRNA-1
chr3_1 CDS 71944060 71944254 71944060 ID=Msa0373020-mRNA-1:cds;Parent=Msa0373020-mRNA-1
chr3_1 CDS 71944443 71944525 71944443 ID=Msa0373020-mRNA-1:cds;Parent=Msa0373020-mRNA-1
chr3_1 CDS 71944908 71945133 71944908 ID=Msa0373020-mRNA-1:cds;Parent=Msa0373020-mRNA-1
chr3_1 CDS 71945445 71945590 71945445 ID=Msa0373020-mRNA-1:cds;Parent=Msa0373020-mRNA-1
chr3_1 CDS 71945824 71945959 71945824 ID=Msa0373020-mRNA-1:cds;Parent=Msa0373020-mRNA-1
chr3_1 CDS 71946328 71946411 71946328 ID=Msa0373020-mRNA-1:cds;Parent=Msa0373020-mRNA-1
chr3_1 CDS 71946499 71946591 71946499 ID=Msa0373020-mRNA-1:cds;Parent=Msa0373020-mRNA-1
chr3_1 CDS 71946694 71946939 71946694 ID=Msa0373020-mRNA-1:cds;Parent=Msa0373020-mRNA-1
chr3_1 three_prime_UTR 71946940 71947186 71946940 ID=Msa0373020-mRNA-1:three_prime_utr;Parent=Msa0373020-mRNA-1
Gene Sequence

>Msa0373020

ATGGTGTTGTTTTGCTTTTGCCCCGTGAATGTGAATGTGATCCACCAATCTTTCTTCTCCATTTCCCTTCCACATTTTCCACGCCACAACAACTTCACCTTTCAATCTTCTTCACATTCCCTCAGTTTACCATGGAGGAAAGACTCACCAAGAACCAAAATACACTCTTCACTTACAGTAGATGTAGCTGTAGAGGAAAAAAAGCTACCAAAAGGAGAAACATGGTCAGTTCACAAATTTGGTGGAACATGTGTGGGAAGTTCAGCAAGAATAAATAATGTTGCAGATGTAATAATCAATGATGATTCTGAGAGAAAATTGGTGGTAGTTTCTGCTATGTCAAAAGTAACAGATATGATGTATGATCTCATCCACAAGGCTGAAGCTCAGGATAAGTCTTATATATCTGCACTTGATGCTGTTGAAGAGAAGCATAGCTTAACGGCACAAGAATTGTTTGATGGAGATGATCTTGCTACTTTCTTGTCAAATTTGCATCAAGATGTTGGAAATTTAAAGGCAATGCTTCAAGCTATTGACATAGCTGGTCATGCTACAGAATCCTTTACTGACTTAGTTGTGGGACATGGGGAGCTGTGGTCTGCACAGATATTGTCTTTTGTTGTTAAGAAGAAAGGGACTCCCTGCAAATGGATGGACACAAGGGAAGTCCTCATTGTAAATCCTACTCGTGATGATCAAGTTGATCCTGATTACTTGGAAACTGAACAGAGACTTAATAAATGGTACTCTCTTAATCCATCTAAGGTAATCATTGCTACTGGATTTATAGCAAGCACACCTCAAAACATTCCCACTACTCTCAAGAGAGATGGAAGTGACTTCTCCGCAGCAATTATGGGCGCGATATTCAGGGCTCGTCAAGTCACCATTTGGACCGATGTTGATGGTGTGTATAGTGCAGATCCTAGAAAAGTTAGTGATGCTGTGATTTTGAAGACACTGTCTTATCAAGAGGCATGGGAGATGTCTTATTTTGGTGCAAATGTCTTACATCCACGCACAATTAGTCCTGTTATTCGCTATGGCATACCAATTATAATAAGGAATATTTTCAACACCTCTGCTTCTGGAACCAAGATCTGCCATCCTTCTATTATTGAAAATGAAGATAAGAAGATATTAAAAGATTATGTCAAAGGCTTTACAACGATAGACAACTTGGCACTTGTAAATGTAGAAGGAACTGGAATGGCTGGTGTTCCAGGTACCGCCAGTACTATTTTTAGCGCAGTAAAAGAGGTTGGAGCCAATGTTATTATGATATCTCAGGCTAGTAGTGAGCATTCTGTATGTTTTGCTGTGCCTGAGAAAGAAGTAAAAGCTATAGCTGAGGTGTTGGAATCTATATTTGACAGCGCTTTGTTTGCTGGGCGTATTTCTCAGGTTGCAGTCATTTCAAATTGCAGTATTTTGGCAGCTGTTGGCCAGAAAATGGCAAGTACTCCAGGAGTTAGTGCCACCCTTTTCAATGCATTGGCTCAGGCCAACATAAATATCCTTGCTATAGCACAAGGTTGTTCTGAGTACAATGTTACTGTTGTTCTTAAGCGAGAAGATTCTATAAAGGCTCTGCGGGCTGTCCATTCCAGATTTTATGACTCACAAACCACCATGGCAATGGGCATAATTGGACCTGGATTAATTGGGAGCACACTACTTGATCAGCTAAGGGATCAGGCAGCAACTTTGAAAGAAGAATCAAACATTGATTTGCGTGTAATGGGGATCATGGGTTCAAAGTCGATGCTCCTTGATAATTTGGGAATCGACTTGGTAAAGTGGAGAGAAATTCGAGAGGAAAAAGGTGAAGCGGCTGATTTGGAAAAATTTGTTCAAAATGTACACGGAAATCATGTTATACCAAACACGGTTTTAGTAGACTGCACAGCTGACTCCGCCATAGCAAGCCATTATGATGACTGGCTGCGCAAGGGAATACATGTTATCACCCCCAATAAAAAGGCAAATTCAGGACCACTTAGTGAGTATTTGAGGTTAAGAGCTCTTCAAAGGCAATCATACACACATTACTTCTATGAAGCTACTGTTGGAGCTGGTCTTCCCATTATTGGCACTTTACGGGGCCTTCTCGAAACCGGTGACAAAATATTGCAAATTGAAGGAATCTTCAGTGGGACATTGAGTTGCATCTTTAATAACTTCAAGGATGGCCGAGTTTTTAGTGAGGTAGTTGCTGAAGCAAAGGAAGCAGGTTATACTGAACCAGATCCAAGGGATGATCTGTCTGGAACTGACGTAGCAAGAAAGGTGATAATTCTTGCGAGGGAATCTGGCCTAAAGCTAGAGCTTTCTGATATTCCGGTTGAAAATCTTGTGCCGGAACCATTAAGAGTTAGCGCATCAACTCAAGAGTTTATGCAGAAATTACCAAAATTTGACGAGGAGTTTTCAAAGAGACAAGAAGAGGCTGACACTGCTGGAGAAGTATTGAGATACGTGGGAGTGGTAGACGTGACTAATCAAAAGGGAATGGTCGAGCTACGAAGATACAAGAAGGACCATCCATTTGCACAATTATCTGGCTCAGATAACATCATTGCATTCACAACAAGAAGATATAGACATCAGCCTCTGATAGTCCGTGGACCAGGAGCTGGTGCACAAGTCACAGCTGGTGGAATATTCAGCGACATTTTACGACTTGCTTCATATCTTGGTGCTCCGTCTTAG

Protein sequence

>Msa0373020

MVLFCFCPVNVNVIHQSFFSISLPHFPRHNNFTFQSSSHSLSLPWRKDSPRTKIHSSLTVDVAVEEKKLPKGETWSVHKFGGTCVGSSARINNVADVIINDDSERKLVVVSAMSKVTDMMYDLIHKAEAQDKSYISALDAVEEKHSLTAQELFDGDDLATFLSNLHQDVGNLKAMLQAIDIAGHATESFTDLVVGHGELWSAQILSFVVKKKGTPCKWMDTREVLIVNPTRDDQVDPDYLETEQRLNKWYSLNPSKVIIATGFIASTPQNIPTTLKRDGSDFSAAIMGAIFRARQVTIWTDVDGVYSADPRKVSDAVILKTLSYQEAWEMSYFGANVLHPRTISPVIRYGIPIIIRNIFNTSASGTKICHPSIIENEDKKILKDYVKGFTTIDNLALVNVEGTGMAGVPGTASTIFSAVKEVGANVIMISQASSEHSVCFAVPEKEVKAIAEVLESIFDSALFAGRISQVAVISNCSILAAVGQKMASTPGVSATLFNALAQANINILAIAQGCSEYNVTVVLKREDSIKALRAVHSRFYDSQTTMAMGIIGPGLIGSTLLDQLRDQAATLKEESNIDLRVMGIMGSKSMLLDNLGIDLVKWREIREEKGEAADLEKFVQNVHGNHVIPNTVLVDCTADSAIASHYDDWLRKGIHVITPNKKANSGPLSEYLRLRALQRQSYTHYFYEATVGAGLPIIGTLRGLLETGDKILQIEGIFSGTLSCIFNNFKDGRVFSEVVAEAKEAGYTEPDPRDDLSGTDVARKVIILARESGLKLELSDIPVENLVPEPLRVSASTQEFMQKLPKFDEEFSKRQEEADTAGEVLRYVGVVDVTNQKGMVELRRYKKDHPFAQLSGSDNIIAFTTRRYRHQPLIVRGPGAGAQVTAGGIFSDILRLASYLGAPS*