Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0373020 | XP_039687528.1 | 97.680 | 905 | 18 | 3 | 1 | 904 | 1 | 903 | 0.0 | 1816 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0373020 | sp|O81852|AKH2_ARATH | 78.002 | 841 | 183 | 1 | 64 | 904 | 78 | 916 | 0.0 | 1369 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0373020 | G7JAT7 | 97.357 | 908 | 18 | 4 | 1 | 904 | 1 | 906 | 0.0 | 1808 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0373020 | Msa0467560 | 0.868680 | 5.451905e-66 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0373020 | MtrunA17_Chr3g0121961 | 97.357 | 908 | 18 | 4 | 1 | 904 | 1 | 906 | 0.0 | 1808 |
Msa0373020 | MtrunA17_Chr8g0377971 | 82.380 | 874 | 151 | 1 | 34 | 904 | 43 | 916 | 0.0 | 1503 |
Msa0373020 | MtrunA17_Chr3g0118521 | 33.422 | 374 | 218 | 8 | 545 | 894 | 3 | 369 | 2.79e-51 | 184 |
Msa0373020 | MtrunA17_Chr7g0252051 | 28.189 | 486 | 299 | 13 | 77 | 542 | 81 | 536 | 7.63e-50 | 185 |
Msa0373020 | MtrunA17_Chr6g0461951 | 27.122 | 483 | 310 | 10 | 77 | 543 | 83 | 539 | 2.98e-46 | 174 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0373020 | AT4G19710.2 | 78.002 | 841 | 183 | 1 | 64 | 904 | 78 | 916 | 0.0 | 1369 |
Msa0373020 | AT1G31230.1 | 75.618 | 849 | 205 | 1 | 56 | 904 | 65 | 911 | 0.0 | 1319 |
Msa0373020 | AT4G19710.1 | 76.873 | 761 | 174 | 1 | 64 | 824 | 78 | 836 | 0.0 | 1220 |
Msa0373020 | AT5G21060.3 | 34.316 | 373 | 212 | 10 | 550 | 896 | 8 | 373 | 4.55e-52 | 187 |
Msa0373020 | AT5G21060.1 | 33.867 | 375 | 209 | 11 | 550 | 896 | 8 | 371 | 4.59e-52 | 187 |
Msa0373020 | AT5G21060.2 | 34.316 | 373 | 212 | 10 | 550 | 896 | 8 | 373 | 4.60e-52 | 187 |
Msa0373020 | AT5G13280.1 | 28.597 | 549 | 331 | 16 | 24 | 542 | 27 | 544 | 1.95e-47 | 179 |
Msa0373020 | AT3G02020.1 | 28.324 | 519 | 320 | 14 | 63 | 559 | 70 | 558 | 7.80e-47 | 177 |
Msa0373020 | AT5G14060.1 | 27.586 | 493 | 303 | 13 | 73 | 542 | 81 | 542 | 3.77e-46 | 174 |
Msa0373020 | AT5G14060.2 | 27.586 | 493 | 303 | 13 | 73 | 542 | 81 | 542 | 3.77e-46 | 174 |
Msa0373020 | AT5G14060.3 | 29.134 | 381 | 239 | 9 | 73 | 442 | 81 | 441 | 8.16e-38 | 148 |
Find 205 sgRNAs with CRISPR-Local
Find 443 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAATCGGTTCTTACTCTTAA+TGG | 0.142845 | 3_1:-71946403 | None:intergenic |
GAAAACTCCTCGTCAAATTT+TGG | 0.147615 | 3_1:-71946535 | None:intergenic |
ATAATTGGACCTGGATTAAT+TGG | 0.182484 | 3_1:+71944201 | Msa0373020:CDS |
CAATTATGGGCGCGATATTC+AGG | 0.184677 | 3_1:+71942349 | Msa0373020:CDS |
CATCTTGTGCAGTCTTATTT+TGG | 0.195740 | 3_1:+71942783 | Msa0373020:intron |
TGACTTCTCCGCAGCAATTA+TGG | 0.200786 | 3_1:+71942335 | Msa0373020:CDS |
AAAATATTCCTTATTATAAT+TGG | 0.206918 | 3_1:-71942858 | None:intergenic |
AAAATACACTCTTCACTTAC+AGG | 0.211167 | 3_1:+71940017 | Msa0373020:CDS |
ACCATGGCAATGGGCATAAT+TGG | 0.214004 | 3_1:+71944186 | Msa0373020:CDS |
GGAGCTGGTCTTCCCATTAT+TGG | 0.217397 | 3_1:+71945508 | Msa0373020:CDS |
CATTTCAAATTGCAGTATTT+TGG | 0.217640 | 3_1:+71943608 | Msa0373020:CDS |
CCTTGTGTCCATCCATTTGC+AGG | 0.225260 | 3_1:-71942139 | None:intergenic |
ACATGGTCAGTTCACAAATT+TGG | 0.240332 | 3_1:+71940176 | Msa0373020:CDS |
TCAAGATGTTGGAAATTTAA+AGG | 0.245840 | 3_1:+71940454 | Msa0373020:CDS |
CATCCATTTGCACAATTATC+TGG | 0.247353 | 3_1:+71946769 | Msa0373020:CDS |
TTTGACAGCGCTTTGTTTGC+TGG | 0.257116 | 3_1:+71943411 | Msa0373020:CDS |
TTCCCATTATTGGCACTTTA+CGG | 0.257376 | 3_1:+71945518 | Msa0373020:CDS |
CTCTCTGCTTCTAGTATTTG+AGG | 0.275251 | 3_1:+71945431 | Msa0373020:intron |
GGCAGCTGTTGGCCAGAAAA+TGG | 0.279914 | 3_1:+71943629 | Msa0373020:CDS |
ACTGACCATGTTTCTCCTTT+TGG | 0.282626 | 3_1:-71940164 | None:intergenic |
ACTGGAATGGCTGGTGTTCC+AGG | 0.296123 | 3_1:+71943149 | Msa0373020:CDS |
TGTAAGTGAAGAGTGTATTT+TGG | 0.296404 | 3_1:-71940015 | None:intergenic |
AACATTGATTTGCGTGTAAT+GGG | 0.300206 | 3_1:+71944467 | Msa0373020:CDS |
TCCCATTATTGGCACTTTAC+GGG | 0.305246 | 3_1:+71945519 | Msa0373020:CDS |
AAAAGGTGAAGCGGCTGATT+TGG | 0.310156 | 3_1:+71944947 | Msa0373020:CDS |
CTGAACAGAGACTTAATAAA+TGG | 0.319803 | 3_1:+71942220 | Msa0373020:CDS |
GCTAGAGCTTTCTGATATTC+CGG | 0.325511 | 3_1:+71946360 | Msa0373020:CDS |
ATAATTCTTGCGAGGGAATC+TGG | 0.325746 | 3_1:+71946331 | Msa0373020:CDS |
TTACGACTTGCTTCATATCT+TGG | 0.328731 | 3_1:+71946904 | Msa0373020:CDS |
ATGGCATACCAATTATAATA+AGG | 0.331452 | 3_1:+71942850 | Msa0373020:CDS |
GTAGCAATGATTACCTTAGA+TGG | 0.335226 | 3_1:-71942255 | None:intergenic |
TCTTAGTGTAACATTAGTTC+TGG | 0.347448 | 3_1:+71946997 | Msa0373020:three_prime_UTR |
GTACTCTCTTAATCCATCTA+AGG | 0.351418 | 3_1:+71942242 | Msa0373020:CDS |
GTTCTTACTCTTAATGGTTC+CGG | 0.356717 | 3_1:-71946397 | None:intergenic |
GCCCCGTAAAGTGCCAATAA+TGG | 0.358952 | 3_1:-71945521 | None:intergenic |
TAAGCGAGAAGATTCTATAA+AGG | 0.360058 | 3_1:+71944122 | Msa0373020:CDS |
TTGGCACTTGTAAATGTAGA+AGG | 0.362262 | 3_1:+71942987 | Msa0373020:CDS |
GACTTCTCCGCAGCAATTAT+GGG | 0.362658 | 3_1:+71942336 | Msa0373020:CDS |
TGCAAATTGAAGGAATCTTC+AGG | 0.364806 | 3_1:+71945569 | Msa0373020:CDS |
AAACATTGATTTGCGTGTAA+TGG | 0.370904 | 3_1:+71944466 | Msa0373020:CDS |
GTTTGCTGGGCGTATTTCTC+AGG | 0.372575 | 3_1:+71943425 | Msa0373020:CDS |
TGTTCAGTTTCCAAGTAATC+AGG | 0.373131 | 3_1:-71942204 | None:intergenic |
TATCAGAAAGCTCTAGCTTT+AGG | 0.381405 | 3_1:-71946354 | None:intergenic |
TCATCACAAAGATTATATTA+TGG | 0.390808 | 3_1:-71947134 | None:intergenic |
TGGAAAATGTGGAAGGGAAA+TGG | 0.393165 | 3_1:-71939790 | None:intergenic |
TTGCATCTTTAATAACTTCA+AGG | 0.396247 | 3_1:+71945836 | Msa0373020:CDS |
AAGAAAGGGATCAAATTAGA+TGG | 0.403070 | 3_1:-71946975 | None:intergenic |
TTGACAGCGCTTTGTTTGCT+GGG | 0.407848 | 3_1:+71943412 | Msa0373020:CDS |
GGTATGCCATAGCGAATAAC+AGG | 0.407991 | 3_1:-71942837 | None:intergenic |
TCAAGTTGATCCTGATTACT+TGG | 0.408876 | 3_1:+71942194 | Msa0373020:CDS |
GTGACTTGTGCACCAGCTCC+TGG | 0.411867 | 3_1:-71946856 | None:intergenic |
CCCCGTAAAGTGCCAATAAT+GGG | 0.412176 | 3_1:-71945520 | None:intergenic |
GGGCTCGTCAAGTCACCATT+TGG | 0.412189 | 3_1:+71942370 | Msa0373020:CDS |
TGATGATTCTGAGAGAAAAT+TGG | 0.414922 | 3_1:+71940256 | Msa0373020:CDS |
TCAAATTTGCATCAAGATGT+TGG | 0.416184 | 3_1:+71940443 | Msa0373020:CDS |
AGAGAAATTCGAGAGGAAAA+AGG | 0.432621 | 3_1:+71944930 | Msa0373020:CDS |
CTTGGTGAGTCTTTCCTCCA+TGG | 0.434571 | 3_1:-71939990 | None:intergenic |
ACGGCACAAGAATTGTTTGA+TGG | 0.436063 | 3_1:+71940398 | Msa0373020:CDS |
TGGATCACATTCACATTCAC+GGG | 0.441993 | 3_1:-71939753 | None:intergenic |
CAAGAAGAGGCTGACACTGC+TGG | 0.444680 | 3_1:+71946565 | Msa0373020:CDS |
CTTTGTGATGATATATATCT+TGG | 0.444767 | 3_1:+71947146 | Msa0373020:three_prime_UTR |
AAAAGCAAAACAACACCATT+TGG | 0.446657 | 3_1:-71939728 | None:intergenic |
TCCTTTACTGACTTAGTTGT+GGG | 0.448104 | 3_1:+71941890 | Msa0373020:CDS |
AAAAGGGTGGCACTAACTCC+TGG | 0.451346 | 3_1:-71943660 | None:intergenic |
TGAAGAGAAGCATAGCTTAA+CGG | 0.451830 | 3_1:+71940379 | Msa0373020:CDS |
CAGAAAATGGCAAGTACTCC+AGG | 0.457783 | 3_1:+71943642 | Msa0373020:CDS |
CAGTCTACTAAAACCGTGTT+TGG | 0.459411 | 3_1:-71945008 | None:intergenic |
CATCCACAAGGCTGAAGCTC+AGG | 0.460872 | 3_1:+71940325 | Msa0373020:CDS |
GGTAGACGTGACTAATCAAA+AGG | 0.462124 | 3_1:+71946714 | Msa0373020:CDS |
TTACGGGGCCTTCTCGAAAC+CGG | 0.462386 | 3_1:+71945535 | Msa0373020:CDS |
ATTTGACTTACAAATTATCA+AGG | 0.464676 | 3_1:-71944514 | None:intergenic |
TACTTCTATGAAGCTACTGT+TGG | 0.467919 | 3_1:+71945487 | Msa0373020:CDS |
GACAGATCATCCCTTGGATC+TGG | 0.468935 | 3_1:-71945915 | None:intergenic |
GAGCCAGATAATTGTGCAAA+TGG | 0.471377 | 3_1:-71946772 | None:intergenic |
TCTAAGGTAATCATTGCTAC+TGG | 0.476290 | 3_1:+71942258 | Msa0373020:CDS |
CCCATTATTGGCACTTTACG+GGG | 0.477220 | 3_1:+71945520 | Msa0373020:CDS |
ACCATCAACATCGGTCCAAA+TGG | 0.477547 | 3_1:-71942385 | None:intergenic |
CCTGAGCCAATGCATTGAAA+AGG | 0.477917 | 3_1:-71943677 | None:intergenic |
TCACAAACCACCATGGCAAT+GGG | 0.479222 | 3_1:+71944177 | Msa0373020:CDS |
CAATGTTATTATGATATCTC+AGG | 0.481310 | 3_1:+71943214 | Msa0373020:CDS |
CTCACTCACTCACTGCCAAA+TGG | 0.481540 | 3_1:+71939713 | Msa0373020:exon |
AATAGAAGGATGGCAGATCT+TGG | 0.482872 | 3_1:-71942901 | None:intergenic |
GGGAAATGGAGAAGAAAGAT+TGG | 0.483371 | 3_1:-71939776 | None:intergenic |
AATCTTCTTCACATTCCCTC+AGG | 0.486767 | 3_1:+71939835 | Msa0373020:CDS |
TTTAGCGCAGTAAAAGAGGT+TGG | 0.488466 | 3_1:+71943188 | Msa0373020:CDS |
TGCGCAGCCAGTCATCATAA+TGG | 0.489412 | 3_1:-71945055 | None:intergenic |
GACAAAATATTGCAAATTGA+AGG | 0.491595 | 3_1:+71945559 | Msa0373020:CDS |
ATTAGTCCTGTTATTCGCTA+TGG | 0.491955 | 3_1:+71942831 | Msa0373020:CDS |
ACTGACTTAGTTGTGGGACA+TGG | 0.492278 | 3_1:+71941896 | Msa0373020:CDS |
GTGGATCACATTCACATTCA+CGG | 0.493781 | 3_1:-71939754 | None:intergenic |
TTTGCGTGTAATGGGGATCA+TGG | 0.494518 | 3_1:+71944475 | Msa0373020:CDS |
TAATGTTACACTAAGAAGAA+AGG | 0.494640 | 3_1:-71946990 | None:intergenic |
CTTGTGTCCATCCATTTGCA+GGG | 0.495349 | 3_1:-71942138 | None:intergenic |
AAAATAGTACTGGCGGTACC+TGG | 0.498155 | 3_1:-71943167 | None:intergenic |
ATCCTTTACTGACTTAGTTG+TGG | 0.498349 | 3_1:+71941889 | Msa0373020:CDS |
AATGTTACACTAAGAAGAAA+GGG | 0.498554 | 3_1:-71946989 | None:intergenic |
AAAAGCTATAGCTGAGGTGT+TGG | 0.501442 | 3_1:+71943380 | Msa0373020:CDS |
AGATTCTATAAAGGCTCTGC+GGG | 0.501469 | 3_1:+71944131 | Msa0373020:CDS |
TATCCTGAGCTTCAGCCTTG+TGG | 0.505692 | 3_1:-71940328 | None:intergenic |
ATCTTTAATAACTTCAAGGA+TGG | 0.508110 | 3_1:+71945840 | Msa0373020:CDS |
ACCATTTGGACCGATGTTGA+TGG | 0.508173 | 3_1:+71942384 | Msa0373020:CDS |
GTTGCTGAAGCAAAGGAAGC+AGG | 0.509400 | 3_1:+71945882 | Msa0373020:CDS |
GATCCAAGGGATGATCTGTC+TGG | 0.511718 | 3_1:+71945918 | Msa0373020:CDS |
ACTTGATCAGCTAAGGGATC+AGG | 0.512149 | 3_1:+71944233 | Msa0373020:CDS |
TCCAATTATGCCCATTGCCA+TGG | 0.512803 | 3_1:-71944187 | None:intergenic |
AATTATGGGCGCGATATTCA+GGG | 0.512887 | 3_1:+71942350 | Msa0373020:CDS |
TTCAGTAGATGTAGCTGTAG+AGG | 0.513353 | 3_1:+71940130 | Msa0373020:intron |
TCCGGTTGAAAATCTTGTGC+CGG | 0.514423 | 3_1:+71946378 | Msa0373020:CDS |
GGTTTGTGAGTCATAAAATC+TGG | 0.515634 | 3_1:-71944163 | None:intergenic |
CACTGTCTTATCAAGAGGCA+TGG | 0.517169 | 3_1:+71942677 | Msa0373020:CDS |
ATCATAATGGCTTGCTATGG+CGG | 0.519320 | 3_1:-71945042 | None:intergenic |
CTGACTTAGTTGTGGGACAT+GGG | 0.523976 | 3_1:+71941897 | Msa0373020:CDS |
CTGAGCCAATGCATTGAAAA+GGG | 0.524842 | 3_1:-71943676 | None:intergenic |
GCACACTACTTGATCAGCTA+AGG | 0.525209 | 3_1:+71944226 | Msa0373020:CDS |
AGAAAGGGACTCCCTGCAAA+TGG | 0.528240 | 3_1:+71942127 | Msa0373020:intron |
TGGAACTGACGTAGCAAGAA+AGG | 0.528296 | 3_1:+71945938 | Msa0373020:CDS |
CCTCTGATAGTCCGTGGACC+AGG | 0.529210 | 3_1:+71946838 | Msa0373020:CDS |
GAAGACACTGTCTTATCAAG+AGG | 0.529922 | 3_1:+71942672 | Msa0373020:CDS |
CTCACAAACCACCATGGCAA+TGG | 0.529985 | 3_1:+71944176 | Msa0373020:CDS |
ATAGTCCGTGGACCAGGAGC+TGG | 0.530530 | 3_1:+71946844 | Msa0373020:CDS |
CAGATAATTGTGCAAATGGA+TGG | 0.531821 | 3_1:-71946768 | None:intergenic |
TAATTGGACCTGGATTAATT+GGG | 0.533041 | 3_1:+71944202 | Msa0373020:CDS |
CCATCTCTCTTGAGAGTAGT+GGG | 0.533662 | 3_1:-71942309 | None:intergenic |
CTTTACAACGATAGACAACT+TGG | 0.533740 | 3_1:+71942968 | Msa0373020:CDS |
TTGTTGTGGCGTGGAAAATG+TGG | 0.534573 | 3_1:-71939801 | None:intergenic |
GTGCACCAGCTCCTGGTCCA+CGG | 0.536145 | 3_1:-71946849 | None:intergenic |
TAGCAAGCCATTATGATGAC+TGG | 0.539883 | 3_1:+71945048 | Msa0373020:CDS |
TATAGCAAGGATATTTATGT+TGG | 0.541082 | 3_1:-71944061 | None:intergenic |
TATAGTGCAGATCCTAGAAA+AGG | 0.542051 | 3_1:+71942411 | Msa0373020:CDS |
ATATTAAAAGATTATGTCAA+AGG | 0.543405 | 3_1:+71942945 | Msa0373020:CDS |
TGAGGTTAAGAGCTCTTCAA+AGG | 0.543432 | 3_1:+71945449 | Msa0373020:CDS |
AATTATGCCCATTGCCATGG+TGG | 0.544162 | 3_1:-71944184 | None:intergenic |
TCCCACAACTAAGTCAGTAA+AGG | 0.544287 | 3_1:-71941891 | None:intergenic |
TTGTGGGACATGGGGAGCTG+TGG | 0.547165 | 3_1:+71941906 | Msa0373020:CDS |
TTATTGCAGGGGAATCGACT+TGG | 0.547464 | 3_1:+71944899 | Msa0373020:intron |
TGGTCAGTTCACAAATTTGG+TGG | 0.549254 | 3_1:+71940179 | Msa0373020:CDS |
TCCATCTCTCTTGAGAGTAG+TGG | 0.550339 | 3_1:-71942310 | None:intergenic |
GTGAGTCATAAAATCTGGAA+TGG | 0.551255 | 3_1:-71944158 | None:intergenic |
TATGAAGCTACTGTTGGAGC+TGG | 0.552013 | 3_1:+71945493 | Msa0373020:CDS |
TGAGGTAGTTGCTGAAGCAA+AGG | 0.555717 | 3_1:+71945875 | Msa0373020:CDS |
GGGGAATCGACTTGGTAAAG+TGG | 0.555762 | 3_1:+71944907 | Msa0373020:intron |
TTATGATGACTGGCTGCGCA+AGG | 0.556068 | 3_1:+71945058 | Msa0373020:CDS |
AGGGACTCCCTGCAAATGGA+TGG | 0.556923 | 3_1:+71942131 | Msa0373020:CDS |
AGTGTGCTCCCAATTAATCC+AGG | 0.560803 | 3_1:-71944210 | None:intergenic |
GCTGGTGCACAAGTCACAGC+TGG | 0.561903 | 3_1:+71946862 | Msa0373020:CDS |
CCCACTACTCTCAAGAGAGA+TGG | 0.565006 | 3_1:+71942309 | Msa0373020:CDS |
GTCATCATAATGGCTTGCTA+TGG | 0.567164 | 3_1:-71945045 | None:intergenic |
TTATCAAGAGGCATGGGAGA+TGG | 0.567207 | 3_1:+71942684 | Msa0373020:CDS |
GGTATTGAGATACGTGGGAG+TGG | 0.569260 | 3_1:+71946693 | Msa0373020:intron |
ATGCTTCAAGCTATTGACAT+AGG | 0.569687 | 3_1:+71940479 | Msa0373020:CDS |
CCTGCAAATGGATGGACACA+AGG | 0.574446 | 3_1:+71942139 | Msa0373020:CDS |
ACAGGTGATAATTCTTGCGA+GGG | 0.575424 | 3_1:+71946324 | Msa0373020:intron |
CTGAGATATCATAATAACAT+TGG | 0.576835 | 3_1:-71943213 | None:intergenic |
AAATGGAGAAGAAAGATTGG+TGG | 0.577922 | 3_1:-71939773 | None:intergenic |
AACAACCTTGTGCTATAGCA+AGG | 0.580471 | 3_1:-71944074 | None:intergenic |
TTGCGTGTAATGGGGATCAT+GGG | 0.583341 | 3_1:+71944476 | Msa0373020:CDS |
GGTGCACAAGTCACAGCTGG+TGG | 0.583364 | 3_1:+71946865 | Msa0373020:CDS |
TACAGGTGATAATTCTTGCG+AGG | 0.589324 | 3_1:+71946323 | Msa0373020:intron |
CGTGACTAATCAAAAGGGAA+TGG | 0.593201 | 3_1:+71946720 | Msa0373020:CDS |
GTTCCAGACAGATCATCCCT+TGG | 0.593893 | 3_1:-71945921 | None:intergenic |
AGCATTGAAGATTAACTACA+AGG | 0.595661 | 3_1:+71947062 | Msa0373020:three_prime_UTR |
GCAATGGGCATAATTGGACC+TGG | 0.598231 | 3_1:+71944192 | Msa0373020:CDS |
CAAATTTGGTGGAACATGTG+TGG | 0.600704 | 3_1:+71940190 | Msa0373020:CDS |
TGACTTAGTTGTGGGACATG+GGG | 0.601011 | 3_1:+71941898 | Msa0373020:CDS |
ACTGTCTTATCAAGAGGCAT+GGG | 0.602739 | 3_1:+71942678 | Msa0373020:CDS |
CACACTACTTGATCAGCTAA+GGG | 0.604044 | 3_1:+71944227 | Msa0373020:CDS |
GTTATACTGAACCAGATCCA+AGG | 0.604842 | 3_1:+71945904 | Msa0373020:CDS |
CCTGGTCCACGGACTATCAG+AGG | 0.606662 | 3_1:-71946838 | None:intergenic |
TATGATGACTGGCTGCGCAA+GGG | 0.608656 | 3_1:+71945059 | Msa0373020:CDS |
GGAATGTGAAGAAGATTGAA+AGG | 0.609635 | 3_1:-71939829 | None:intergenic |
ATTGAAAGGTGAAGTTGTTG+TGG | 0.609959 | 3_1:-71939815 | None:intergenic |
AAATCATGTTATACCAAACA+CGG | 0.611522 | 3_1:+71944995 | Msa0373020:CDS |
GTAGACGTGACTAATCAAAA+GGG | 0.615782 | 3_1:+71946715 | Msa0373020:CDS |
ATCGTGTTTACCTCACTAAG+TGG | 0.617311 | 3_1:-71945122 | None:intergenic |
TGGCACTTGTAAATGTAGAA+GGG | 0.620113 | 3_1:+71942988 | Msa0373020:CDS |
TTGAAGGTATTGAGATACGT+GGG | 0.620162 | 3_1:+71946688 | Msa0373020:intron |
AAATTTGGTGGAACATGTGT+GGG | 0.623160 | 3_1:+71940191 | Msa0373020:CDS |
TTATACTGAACCAGATCCAA+GGG | 0.626685 | 3_1:+71945905 | Msa0373020:CDS |
TCAACTTGATCATCACGAGT+AGG | 0.630309 | 3_1:-71942180 | None:intergenic |
ACATTGATTTGCGTGTAATG+GGG | 0.630578 | 3_1:+71944468 | Msa0373020:CDS |
AGAAGTAAAAGCTATAGCTG+AGG | 0.635029 | 3_1:+71943374 | Msa0373020:CDS |
AAGGTGAAGTTGTTGTGGCG+TGG | 0.636050 | 3_1:-71939810 | None:intergenic |
GATCTTGGTTCCAGAAGCAG+AGG | 0.638422 | 3_1:-71942886 | None:intergenic |
CACGAGTAGGATTTACAATG+AGG | 0.639826 | 3_1:-71942167 | None:intergenic |
AAATTCAGGACCACTTAGTG+AGG | 0.640316 | 3_1:+71945112 | Msa0373020:CDS |
AAATTTGTTCAAAATGTACA+CGG | 0.641865 | 3_1:+71944972 | Msa0373020:CDS |
AATATCCTTGCTATAGCACA+AGG | 0.642453 | 3_1:+71944069 | Msa0373020:CDS |
CATCAGCCTCTGATAGTCCG+TGG | 0.643633 | 3_1:+71946832 | Msa0373020:CDS |
TTTGAAGGTATTGAGATACG+TGG | 0.650454 | 3_1:+71946687 | Msa0373020:intron |
CGAGCTACGAAGATACAAGA+AGG | 0.652358 | 3_1:+71946744 | Msa0373020:CDS |
AGCCAATGCATTGAAAAGGG+TGG | 0.652774 | 3_1:-71943673 | None:intergenic |
TGTGGCGTGGAAAATGTGGA+AGG | 0.659056 | 3_1:-71939797 | None:intergenic |
CTGCAAATGGATGGACACAA+GGG | 0.659166 | 3_1:+71942140 | Msa0373020:CDS |
AGCTACCAAAAGGAGAAACA+TGG | 0.661800 | 3_1:+71940159 | Msa0373020:CDS |
TGATTCTGAGAGAAAATTGG+TGG | 0.666882 | 3_1:+71940259 | Msa0373020:CDS |
ATAACAGGACTAATTGTGCG+TGG | 0.667475 | 3_1:-71942822 | None:intergenic |
ACTATACACACCATCAACAT+CGG | 0.667842 | 3_1:-71942394 | None:intergenic |
GTGGCGTGGAAAATGTGGAA+GGG | 0.670336 | 3_1:-71939796 | None:intergenic |
AAGATTCTATAAAGGCTCTG+CGG | 0.671564 | 3_1:+71944130 | Msa0373020:CDS |
AAAGTGGAGAGAAATTCGAG+AGG | 0.681138 | 3_1:+71944923 | Msa0373020:CDS |
TTATGACTCACAAACCACCA+TGG | 0.683309 | 3_1:+71944170 | Msa0373020:CDS |
GATGTATGATCTCATCCACA+AGG | 0.691167 | 3_1:+71940313 | Msa0373020:CDS |
GAAATTACCAAAATTTGACG+AGG | 0.695620 | 3_1:+71946528 | Msa0373020:CDS |
TATCGCGCCCATAATTGCTG+CGG | 0.698799 | 3_1:-71942343 | None:intergenic |
GGATCACATTCACATTCACG+GGG | 0.741804 | 3_1:-71939752 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATATAAAATTTAAAAAATTT+CGG | + | chr3_1:71941011-71941030 | Msa0373020:intron | 0.0% |
!! | TAAATAAATAGATAGTTATT+TGG | - | chr3_1:71940968-71940987 | None:intergenic | 10.0% |
!! | AAAATATTCCTTATTATAAT+TGG | - | chr3_1:71942861-71942880 | None:intergenic | 10.0% |
!! | TTTGTAGTATTTAGTAAAAT+TGG | - | chr3_1:71940828-71940847 | None:intergenic | 15.0% |
!! | AAAAAGAAAAGACAATAATT+AGG | - | chr3_1:71941661-71941680 | None:intergenic | 15.0% |
!! | ATATTAAAAGATTATGTCAA+AGG | + | chr3_1:71942945-71942964 | Msa0373020:CDS | 15.0% |
!! | TATTCTAAACTTAACAAAAA+CGG | - | chr3_1:71943719-71943738 | None:intergenic | 15.0% |
!!! | ATTCACAAATTATTCTTTTT+GGG | + | chr3_1:71945385-71945404 | Msa0373020:intron | 15.0% |
!! | AATTATAAGTTATAAGCTAC+AGG | - | chr3_1:71940699-71940718 | None:intergenic | 20.0% |
!! | AATAGATAGTTATTTGGTTA+AGG | - | chr3_1:71940962-71940981 | None:intergenic | 20.0% |
!!! | TAAAAAATTTCGGCTTTATT+TGG | + | chr3_1:71941021-71941040 | Msa0373020:intron | 20.0% |
!!! | GAAGTGTTTAGTAAAATTAA+CGG | + | chr3_1:71941100-71941119 | Msa0373020:intron | 20.0% |
!!! | AACGACAAATATTTTTGATA+TGG | + | chr3_1:71941573-71941592 | Msa0373020:intron | 20.0% |
!!! | TATTAAGTGTGTTATTAGTT+GGG | - | chr3_1:71941845-71941864 | None:intergenic | 20.0% |
!!! | TATTTTTTATCTTAACCCTA+TGG | - | chr3_1:71942057-71942076 | None:intergenic | 20.0% |
!!! | TCTTCATTTTCAATAATAGA+AGG | - | chr3_1:71942918-71942937 | None:intergenic | 20.0% |
!!! | AAGGAAATGTTTTAATATGT+TGG | + | chr3_1:71943977-71943996 | Msa0373020:intron | 20.0% |
!!! | TGCTTTCAAGTATTATAAAT+TGG | + | chr3_1:71944304-71944323 | Msa0373020:intron | 20.0% |
!! | ACAAATGTTATGTTTATGTA+GGG | + | chr3_1:71944358-71944377 | Msa0373020:intron | 20.0% |
!!! | ATTTGACTTACAAATTATCA+AGG | - | chr3_1:71944517-71944536 | None:intergenic | 20.0% |
!! | CTCTATTAGTCATATTAATT+TGG | + | chr3_1:71944845-71944864 | Msa0373020:intron | 20.0% |
!!! | AAATTTGTTCAAAATGTACA+CGG | + | chr3_1:71944972-71944991 | Msa0373020:CDS | 20.0% |
!!! | GATTCACAAATTATTCTTTT+TGG | + | chr3_1:71945384-71945403 | Msa0373020:intron | 20.0% |
!!! | AAATTAAAAGTACCAATTCA+AGG | + | chr3_1:71945727-71945746 | Msa0373020:intron | 20.0% |
!!! | GAAATTGTCAGTATATTTTT+GGG | + | chr3_1:71947084-71947103 | Msa0373020:three_prime_UTR | 20.0% |
!! | TCATCACAAAGATTATATTA+TGG | - | chr3_1:71947137-71947156 | None:intergenic | 20.0% |
! | ATATATGTGGTATATAGTCA+AGG | - | chr3_1:71939893-71939912 | None:intergenic | 25.0% |
! | AAACAAGAAAATGTTATGCA+GGG | - | chr3_1:71939954-71939973 | None:intergenic | 25.0% |
! | AAAACAAGAAAATGTTATGC+AGG | - | chr3_1:71939955-71939974 | None:intergenic | 25.0% |
! | TCAAGATGTTGGAAATTTAA+AGG | + | chr3_1:71940454-71940473 | Msa0373020:CDS | 25.0% |
!! | CTTTATTTGGTAAAAAGTAG+TGG | + | chr3_1:71941034-71941053 | Msa0373020:intron | 25.0% |
!! | AAATATGCATGCTTTTCTTA+GGG | - | chr3_1:71941284-71941303 | None:intergenic | 25.0% |
!! | TAAATATGCATGCTTTTCTT+AGG | - | chr3_1:71941285-71941304 | None:intergenic | 25.0% |
!!! | GATGAATTTTTTGTGATCAA+AGG | + | chr3_1:71941337-71941356 | Msa0373020:intron | 25.0% |
! | TGTTTAGATTTCATGATTGA+TGG | + | chr3_1:71941402-71941421 | Msa0373020:intron | 25.0% |
! | ACCTTAGGTCTAAATAAAAA+GGG | - | chr3_1:71941611-71941630 | None:intergenic | 25.0% |
! | TTGCCTTACTTAAAATTCTT+TGG | + | chr3_1:71941693-71941712 | Msa0373020:intron | 25.0% |
! | CCAAAATATTAAGCTTAACA+TGG | - | chr3_1:71941759-71941778 | None:intergenic | 25.0% |
!! | CCATGTTAAGCTTAATATTT+TGG | + | chr3_1:71941756-71941775 | Msa0373020:intron | 25.0% |
!! | TGTTGCTTAAAAGAAATTTC+TGG | + | chr3_1:71941810-71941829 | Msa0373020:intron | 25.0% |
!! | GTATTAAGTGTGTTATTAGT+TGG | - | chr3_1:71941846-71941865 | None:intergenic | 25.0% |
!!! | ATTGTCTTTTGTTGTTAAGA+AGG | + | chr3_1:71941940-71941959 | Msa0373020:CDS | 25.0% |
! | TAAATGAAGAATAAATGCCA+TGG | - | chr3_1:71942536-71942555 | None:intergenic | 25.0% |
!! | GTTAATCTCCTGAATTTTAA+GGG | - | chr3_1:71942753-71942772 | None:intergenic | 25.0% |
!! | AGTTAATCTCCTGAATTTTA+AGG | - | chr3_1:71942754-71942773 | None:intergenic | 25.0% |
! | ATGGCATACCAATTATAATA+AGG | + | chr3_1:71942850-71942869 | Msa0373020:CDS | 25.0% |
!! | CATTTTCAATAATAGAAGGA+TGG | - | chr3_1:71942914-71942933 | None:intergenic | 25.0% |
! | CATTATAGTCTACAACATTT+GGG | - | chr3_1:71943103-71943122 | None:intergenic | 25.0% |
! | ACATTATAGTCTACAACATT+TGG | - | chr3_1:71943104-71943123 | None:intergenic | 25.0% |
!!! | ATTGTTTTGTTTTGTAGAAC+TGG | + | chr3_1:71943131-71943150 | Msa0373020:intron | 25.0% |
! | CTGAGATATCATAATAACAT+TGG | - | chr3_1:71943216-71943235 | None:intergenic | 25.0% |
! | CAATGTTATTATGATATCTC+AGG | + | chr3_1:71943214-71943233 | Msa0373020:CDS | 25.0% |
! | TGAACAAAAGAAGAAGAATT+TGG | - | chr3_1:71943502-71943521 | None:intergenic | 25.0% |
!! | CATTTCAAATTGCAGTATTT+TGG | + | chr3_1:71943608-71943627 | Msa0373020:CDS | 25.0% |
! | CTAAAGTAATAGAATTTCGA+TGG | + | chr3_1:71943811-71943830 | Msa0373020:intron | 25.0% |
! | AAATCAGGTGAAATACATTA+AGG | + | chr3_1:71943905-71943924 | Msa0373020:intron | 25.0% |
! | AAATACATTAAGGAAGAAGA+GGG | + | chr3_1:71943915-71943934 | Msa0373020:intron | 25.0% |
! | AAGATATCAAAGAAAGATGA+AGG | + | chr3_1:71943958-71943977 | Msa0373020:intron | 25.0% |
!!! | TCATTTGTCTAACTTGTTTA+TGG | + | chr3_1:71944016-71944035 | Msa0373020:intron | 25.0% |
! | TATAGCAAGGATATTTATGT+TGG | - | chr3_1:71944064-71944083 | None:intergenic | 25.0% |
! | CTACATAAACATAACATTTG+TGG | - | chr3_1:71944359-71944378 | None:intergenic | 25.0% |
! | CACAAATGTTATGTTTATGT+AGG | + | chr3_1:71944357-71944376 | Msa0373020:intron | 25.0% |
!! | TATGAATTAATCCATCGATT+GGG | - | chr3_1:71944405-71944424 | None:intergenic | 25.0% |
! | ATATGAATTAATCCATCGAT+TGG | - | chr3_1:71944406-71944425 | None:intergenic | 25.0% |
!!! | CATATAACATTTTTTCATGC+AGG | + | chr3_1:71944421-71944440 | Msa0373020:intron | 25.0% |
! | CCAAAAAGTTAAAGTGAAAA+GGG | - | chr3_1:71944698-71944717 | None:intergenic | 25.0% |
! | ACCAAAAAGTTAAAGTGAAA+AGG | - | chr3_1:71944699-71944718 | None:intergenic | 25.0% |
!!! | TTTCACTTTAACTTTTTGGT+AGG | + | chr3_1:71944699-71944718 | Msa0373020:intron | 25.0% |
! | AACTATAGTTTCTTATTGCA+GGG | + | chr3_1:71944887-71944906 | Msa0373020:intron | 25.0% |
! | AAATCATGTTATACCAAACA+CGG | + | chr3_1:71944995-71945014 | Msa0373020:CDS | 25.0% |
!! | AATTTGCAATATTTTGTCAC+CGG | - | chr3_1:71945557-71945576 | None:intergenic | 25.0% |
! | GACAAAATATTGCAAATTGA+AGG | + | chr3_1:71945559-71945578 | Msa0373020:CDS | 25.0% |
! | GATAATGATAATCCTTGAAT+TGG | - | chr3_1:71945742-71945761 | None:intergenic | 25.0% |
! | TTGCATCTTTAATAACTTCA+AGG | + | chr3_1:71945836-71945855 | Msa0373020:CDS | 25.0% |
! | ATCTTTAATAACTTCAAGGA+TGG | + | chr3_1:71945840-71945859 | Msa0373020:CDS | 25.0% |
! | AAAACTGTGAGAAAAAAATG+TGG | - | chr3_1:71945990-71946009 | None:intergenic | 25.0% |
! | CAAGCTTATACATAAATTTG+AGG | - | chr3_1:71946067-71946086 | None:intergenic | 25.0% |
!! | ATTTGATTTCAAGCTTAGAA+TGG | + | chr3_1:71946107-71946126 | Msa0373020:intron | 25.0% |
!! | GTGTATTTCAAATGTTTCTA+AGG | - | chr3_1:71946156-71946175 | None:intergenic | 25.0% |
!!! | AAATACACAAGTTGATTTCA+TGG | + | chr3_1:71946168-71946187 | Msa0373020:intron | 25.0% |
! | TACTATAATGACAGATTTCT+TGG | + | chr3_1:71946250-71946269 | Msa0373020:intron | 25.0% |
! | AACTGCATAATTCATGAAAT+CGG | - | chr3_1:71946422-71946441 | None:intergenic | 25.0% |
!!! | ATACATTGTTGATTTTATGC+AGG | + | chr3_1:71946477-71946496 | Msa0373020:intron | 25.0% |
!! | TGGAAAAACTAATAGTTTGT+AGG | - | chr3_1:71946621-71946640 | None:intergenic | 25.0% |
! | ATACTATGAAGAAAATGTCA+TGG | - | chr3_1:71946644-71946663 | None:intergenic | 25.0% |
! | AGAACATTTGTAATGTTTGA+AGG | + | chr3_1:71946672-71946691 | Msa0373020:intron | 25.0% |
! | AATGTTACACTAAGAAGAAA+GGG | - | chr3_1:71946992-71947011 | None:intergenic | 25.0% |
! | TAATGTTACACTAAGAAGAA+AGG | - | chr3_1:71946993-71947012 | None:intergenic | 25.0% |
!! | GGAAATTGTCAGTATATTTT+TGG | + | chr3_1:71947083-71947102 | Msa0373020:three_prime_UTR | 25.0% |
! | CTTTGTGATGATATATATCT+TGG | + | chr3_1:71947146-71947165 | Msa0373020:three_prime_UTR | 25.0% |
AAAAGCAAAACAACACCATT+TGG | - | chr3_1:71939731-71939750 | None:intergenic | 30.0% | |
GTAAAAGAAAAGATACCTGA+GGG | - | chr3_1:71939853-71939872 | None:intergenic | 30.0% | |
AGTAAAAGAAAAGATACCTG+AGG | - | chr3_1:71939854-71939873 | None:intergenic | 30.0% | |
AACAAGAAAATGTTATGCAG+GGG | - | chr3_1:71939953-71939972 | None:intergenic | 30.0% | |
!!! | TTCTTGCTTTTAGTTTACCA+TGG | + | chr3_1:71939973-71939992 | Msa0373020:intron | 30.0% |
!! | TGTAAGTGAAGAGTGTATTT+TGG | - | chr3_1:71940018-71940037 | None:intergenic | 30.0% |
AAAATACACTCTTCACTTAC+AGG | + | chr3_1:71940017-71940036 | Msa0373020:CDS | 30.0% | |
! | TGATGATTCTGAGAGAAAAT+TGG | + | chr3_1:71940256-71940275 | Msa0373020:CDS | 30.0% |
TCAAATTTGCATCAAGATGT+TGG | + | chr3_1:71940443-71940462 | Msa0373020:CDS | 30.0% | |
ACAACTAAAATAGACCTGTT+TGG | + | chr3_1:71940587-71940606 | Msa0373020:intron | 30.0% | |
CAACTAAAATAGACCTGTTT+GGG | + | chr3_1:71940588-71940607 | Msa0373020:intron | 30.0% | |
AACTAAAATAGACCTGTTTG+GGG | + | chr3_1:71940589-71940608 | Msa0373020:intron | 30.0% | |
AATAAATCAATACCCCAAAC+AGG | - | chr3_1:71940604-71940623 | None:intergenic | 30.0% | |
! | CACAAATAAGCTAGTTGATA+GGG | - | chr3_1:71940870-71940889 | None:intergenic | 30.0% |
ACACAAATAAGCTAGTTGAT+AGG | - | chr3_1:71940871-71940890 | None:intergenic | 30.0% | |
!! | TATTTGGTTAAGGCTTTGTT+TGG | - | chr3_1:71940952-71940971 | None:intergenic | 30.0% |
ATTTGCAAAGAGCAAAAAGT+AGG | - | chr3_1:71941239-71941258 | None:intergenic | 30.0% | |
! | AATATGCATGCTTTTCTTAG+GGG | - | chr3_1:71941283-71941302 | None:intergenic | 30.0% |
TTCATTTCTTTCATCATGCA+TGG | + | chr3_1:71941441-71941460 | Msa0373020:intron | 30.0% | |
!! | TCCCTTTTTATTTAGACCTA+AGG | + | chr3_1:71941607-71941626 | Msa0373020:intron | 30.0% |
GACCTTAGGTCTAAATAAAA+AGG | - | chr3_1:71941612-71941631 | None:intergenic | 30.0% | |
GACAATAATTAGGAGTTAAC+AGG | - | chr3_1:71941651-71941670 | None:intergenic | 30.0% | |
!! | CAGCCAAAGAATTTTAAGTA+AGG | - | chr3_1:71941699-71941718 | None:intergenic | 30.0% |
TACTTAAAATTCTTTGGCTG+AGG | + | chr3_1:71941699-71941718 | Msa0373020:intron | 30.0% | |
!! | AGAAGGTATGTTCAAGTTTT+AGG | + | chr3_1:71941957-71941976 | Msa0373020:intron | 30.0% |
AGTCCTAGTAATCCAAAATT+TGG | - | chr3_1:71942020-71942039 | None:intergenic | 30.0% | |
CTGAACAGAGACTTAATAAA+TGG | + | chr3_1:71942220-71942239 | Msa0373020:CDS | 30.0% | |
CATCATATAATATCCACTGA+TGG | - | chr3_1:71942471-71942490 | None:intergenic | 30.0% | |
CATCAGTGGATATTATATGA+TGG | + | chr3_1:71942469-71942488 | Msa0373020:intron | 30.0% | |
ACTTATATCGATACATACCA+TGG | + | chr3_1:71942516-71942535 | Msa0373020:intron | 30.0% | |
!!! | TTTGTTTTGTAGAACTGGAA+TGG | + | chr3_1:71943136-71943155 | Msa0373020:intron | 30.0% |
!!! | TATTTTTAGCGCAGTAAAAG+AGG | + | chr3_1:71943184-71943203 | Msa0373020:CDS | 30.0% |
ATGTAACTGTGGATAAACAA+GGG | - | chr3_1:71943268-71943287 | None:intergenic | 30.0% | |
ATGTTTAACTGTGTTTGTGA+AGG | + | chr3_1:71943311-71943330 | Msa0373020:intron | 30.0% | |
! | ATAGCTTTTACTTCTTTCTC+AGG | - | chr3_1:71943369-71943388 | None:intergenic | 30.0% |
!!! | AGTTGTTTTTTGACAAGAAG+TGG | - | chr3_1:71943546-71943565 | None:intergenic | 30.0% |
! | TAGATACCTTTTAATGTCCA+GGG | - | chr3_1:71943848-71943867 | None:intergenic | 30.0% |
! | ATAGATACCTTTTAATGTCC+AGG | - | chr3_1:71943849-71943868 | None:intergenic | 30.0% |
AGAGAAACAAGACTTAAATC+AGG | + | chr3_1:71943890-71943909 | Msa0373020:intron | 30.0% | |
GAAATACATTAAGGAAGAAG+AGG | + | chr3_1:71943914-71943933 | Msa0373020:intron | 30.0% | |
AATACATTAAGGAAGAAGAG+GGG | + | chr3_1:71943916-71943935 | Msa0373020:intron | 30.0% | |
GTCAAACTTGTAAATGAAAC+AGG | + | chr3_1:71944038-71944057 | Msa0373020:intron | 30.0% | |
TAAGCGAGAAGATTCTATAA+AGG | + | chr3_1:71944122-71944141 | Msa0373020:CDS | 30.0% | |
ATAATTGGACCTGGATTAAT+TGG | + | chr3_1:71944201-71944220 | Msa0373020:CDS | 30.0% | |
TAATTGGACCTGGATTAATT+GGG | + | chr3_1:71944202-71944221 | Msa0373020:CDS | 30.0% | |
!! | AAACATTGATTTGCGTGTAA+TGG | + | chr3_1:71944466-71944485 | Msa0373020:CDS | 30.0% |
!! | AACATTGATTTGCGTGTAAT+GGG | + | chr3_1:71944467-71944486 | Msa0373020:CDS | 30.0% |
GTTAATTCCTTAGCATTCAA+GGG | - | chr3_1:71944555-71944574 | None:intergenic | 30.0% | |
TGTTAATTCCTTAGCATTCA+AGG | - | chr3_1:71944556-71944575 | None:intergenic | 30.0% | |
AATCGCTTAATCAACAATGA+AGG | + | chr3_1:71944580-71944599 | Msa0373020:intron | 30.0% | |
!! | CCCTTTTCACTTTAACTTTT+TGG | + | chr3_1:71944695-71944714 | Msa0373020:intron | 30.0% |
! | AAAGAACTTTTCCTATCAAC+AGG | - | chr3_1:71944770-71944789 | None:intergenic | 30.0% |
GAACTATAGTTTCTTATTGC+AGG | + | chr3_1:71944886-71944905 | Msa0373020:intron | 30.0% | |
ACTATAGTTTCTTATTGCAG+GGG | + | chr3_1:71944888-71944907 | Msa0373020:intron | 30.0% | |
! | TGAATTTGCCTTTTTATTGG+GGG | - | chr3_1:71945099-71945118 | None:intergenic | 30.0% |
! | CTGAATTTGCCTTTTTATTG+GGG | - | chr3_1:71945100-71945119 | None:intergenic | 30.0% |
! | CCTGAATTTGCCTTTTTATT+GGG | - | chr3_1:71945101-71945120 | None:intergenic | 30.0% |
! | TCCTGAATTTGCCTTTTTAT+TGG | - | chr3_1:71945102-71945121 | None:intergenic | 30.0% |
! | TAGTAATGAGTGTGTTATTC+AGG | - | chr3_1:71945361-71945380 | None:intergenic | 30.0% |
TTTATTTGTCCCTTGAACAA+GGG | - | chr3_1:71945710-71945729 | None:intergenic | 30.0% | |
ATTTATTTGTCCCTTGAACA+AGG | - | chr3_1:71945711-71945730 | None:intergenic | 30.0% | |
ATCTTATGCTTTCAAACTGA+AGG | + | chr3_1:71945781-71945800 | Msa0373020:intron | 30.0% | |
! | TATTACTTCTGATTTTGCAG+TGG | + | chr3_1:71945804-71945823 | Msa0373020:intron | 30.0% |
! | ATTACTTCTGATTTTGCAGT+GGG | + | chr3_1:71945805-71945824 | Msa0373020:intron | 30.0% |
!! | CACTTAGCTTTAAATTTCTG+TGG | + | chr3_1:71946297-71946316 | Msa0373020:intron | 30.0% |
! | TTAAATTTCTGTGGTTCTAC+AGG | + | chr3_1:71946306-71946325 | Msa0373020:intron | 30.0% |
! | AAATCGGTTCTTACTCTTAA+TGG | - | chr3_1:71946406-71946425 | None:intergenic | 30.0% |
! | ATGTACTTTTGCACTAAACA+TGG | + | chr3_1:71946454-71946473 | Msa0373020:intron | 30.0% |
GAAATTACCAAAATTTGACG+AGG | + | chr3_1:71946528-71946547 | Msa0373020:CDS | 30.0% | |
CAAAAAGACAGTATCTAAGA+CGG | - | chr3_1:71946934-71946953 | None:intergenic | 30.0% | |
AAGAAAGGGATCAAATTAGA+TGG | - | chr3_1:71946978-71946997 | None:intergenic | 30.0% | |
TCTTAGTGTAACATTAGTTC+TGG | + | chr3_1:71946997-71947016 | Msa0373020:three_prime_UTR | 30.0% | |
! | AGCATTGAAGATTAACTACA+AGG | + | chr3_1:71947062-71947081 | Msa0373020:three_prime_UTR | 30.0% |
AAATGGAGAAGAAAGATTGG+TGG | - | chr3_1:71939776-71939795 | None:intergenic | 35.0% | |
ATTGAAAGGTGAAGTTGTTG+TGG | - | chr3_1:71939818-71939837 | None:intergenic | 35.0% | |
GGAATGTGAAGAAGATTGAA+AGG | - | chr3_1:71939832-71939851 | None:intergenic | 35.0% | |
GAGATTGTTGAGCATATATG+TGG | - | chr3_1:71939906-71939925 | None:intergenic | 35.0% | |
!!! | TTGCTTTTAGTTTACCATGG+AGG | + | chr3_1:71939976-71939995 | Msa0373020:intron | 35.0% |
!!! | GAAGAGTGTATTTTGGTTCT+TGG | - | chr3_1:71940011-71940030 | None:intergenic | 35.0% |
GAGGAAAAAAAGCTACCAAA+AGG | + | chr3_1:71940149-71940168 | Msa0373020:CDS | 35.0% | |
ACATGGTCAGTTCACAAATT+TGG | + | chr3_1:71940176-71940195 | Msa0373020:CDS | 35.0% | |
! | AAATTTGGTGGAACATGTGT+GGG | + | chr3_1:71940191-71940210 | Msa0373020:CDS | 35.0% |
! | TGATTCTGAGAGAAAATTGG+TGG | + | chr3_1:71940259-71940278 | Msa0373020:CDS | 35.0% |
! | TGAAGAGAAGCATAGCTTAA+CGG | + | chr3_1:71940379-71940398 | Msa0373020:CDS | 35.0% |
ATGCTTCAAGCTATTGACAT+AGG | + | chr3_1:71940479-71940498 | Msa0373020:CDS | 35.0% | |
AAAGAAGCAGAACAAAAGAG+AGG | - | chr3_1:71940509-71940528 | None:intergenic | 35.0% | |
!! | AAGTAGAAGCTAGTTGATAG+TGG | - | chr3_1:71940925-71940944 | None:intergenic | 35.0% |
!! | TGGTAAAAAGTAGTGGATGA+TGG | + | chr3_1:71941041-71941060 | Msa0373020:intron | 35.0% |
! | GCAAAACTGTTAGCTTATAG+TGG | - | chr3_1:71941189-71941208 | None:intergenic | 35.0% |
AAAAGTAGGTACAGACACTA+AGG | - | chr3_1:71941225-71941244 | None:intergenic | 35.0% | |
! | GCATGCATATTTACCTGTTT+TGG | + | chr3_1:71941292-71941311 | Msa0373020:intron | 35.0% |
TGCTGAACAAGAAATACTGT+TGG | - | chr3_1:71941500-71941519 | None:intergenic | 35.0% | |
ATTAGGAGTTAACAGGATCA+CGG | - | chr3_1:71941644-71941663 | None:intergenic | 35.0% | |
!! | ATCCTTTACTGACTTAGTTG+TGG | + | chr3_1:71941889-71941908 | Msa0373020:CDS | 35.0% |
!! | TCCTTTACTGACTTAGTTGT+GGG | + | chr3_1:71941890-71941909 | Msa0373020:CDS | 35.0% |
TAGGTAGAACAATTCTTAGC+CGG | + | chr3_1:71941976-71941995 | Msa0373020:intron | 35.0% | |
!! | TCAAGTTGATCCTGATTACT+TGG | + | chr3_1:71942194-71942213 | Msa0373020:CDS | 35.0% |
TGTTCAGTTTCCAAGTAATC+AGG | - | chr3_1:71942207-71942226 | None:intergenic | 35.0% | |
GTACTCTCTTAATCCATCTA+AGG | + | chr3_1:71942242-71942261 | Msa0373020:CDS | 35.0% | |
GTAGCAATGATTACCTTAGA+TGG | - | chr3_1:71942258-71942277 | None:intergenic | 35.0% | |
! | TCTAAGGTAATCATTGCTAC+TGG | + | chr3_1:71942258-71942277 | Msa0373020:CDS | 35.0% |
ACTATACACACCATCAACAT+CGG | - | chr3_1:71942397-71942416 | None:intergenic | 35.0% | |
TATAGTGCAGATCCTAGAAA+AGG | + | chr3_1:71942411-71942430 | Msa0373020:CDS | 35.0% | |
! | AAGCAGAACAAACCTTTTCT+AGG | - | chr3_1:71942426-71942445 | None:intergenic | 35.0% |
AAAATCACAGCATCACTAAC+TGG | - | chr3_1:71942652-71942671 | None:intergenic | 35.0% | |
TTCTTGTGCCCTTAAAATTC+AGG | + | chr3_1:71942742-71942761 | Msa0373020:intron | 35.0% | |
!!! | CATCTTGTGCAGTCTTATTT+TGG | + | chr3_1:71942783-71942802 | Msa0373020:intron | 35.0% |
ATTAGTCCTGTTATTCGCTA+TGG | + | chr3_1:71942831-71942850 | Msa0373020:CDS | 35.0% | |
CTTTACAACGATAGACAACT+TGG | + | chr3_1:71942968-71942987 | Msa0373020:CDS | 35.0% | |
TTGGCACTTGTAAATGTAGA+AGG | + | chr3_1:71942987-71943006 | Msa0373020:CDS | 35.0% | |
TGGCACTTGTAAATGTAGAA+GGG | + | chr3_1:71942988-71943007 | Msa0373020:CDS | 35.0% | |
TACTGCGCTAAAAATAGTAC+TGG | - | chr3_1:71943180-71943199 | None:intergenic | 35.0% | |
CATGTAACTGTGGATAAACA+AGG | - | chr3_1:71943269-71943288 | None:intergenic | 35.0% | |
CAGTTTCATACATGTAACTG+TGG | - | chr3_1:71943279-71943298 | None:intergenic | 35.0% | |
AGAAGTAAAAGCTATAGCTG+AGG | + | chr3_1:71943374-71943393 | Msa0373020:CDS | 35.0% | |
TGTTATAGCAGAATTGGAGT+TGG | - | chr3_1:71943453-71943472 | None:intergenic | 35.0% | |
GCATGTTGTTATAGCAGAAT+TGG | - | chr3_1:71943459-71943478 | None:intergenic | 35.0% | |
AAAGTATGTAACCACTTCTC+AGG | + | chr3_1:71943578-71943597 | Msa0373020:intron | 35.0% | |
! | AGATACCTTTTAATGTCCAG+GGG | - | chr3_1:71943847-71943866 | None:intergenic | 35.0% |
! | AATATCCTTGCTATAGCACA+AGG | + | chr3_1:71944069-71944088 | Msa0373020:CDS | 35.0% |
AAGATTCTATAAAGGCTCTG+CGG | + | chr3_1:71944130-71944149 | Msa0373020:CDS | 35.0% | |
GTGAGTCATAAAATCTGGAA+TGG | - | chr3_1:71944161-71944180 | None:intergenic | 35.0% | |
GGTTTGTGAGTCATAAAATC+TGG | - | chr3_1:71944166-71944185 | None:intergenic | 35.0% | |
!! | ACATTGATTTGCGTGTAATG+GGG | + | chr3_1:71944468-71944487 | Msa0373020:CDS | 35.0% |
GACATCAGTTAACAAATTCC+AGG | - | chr3_1:71944809-71944828 | None:intergenic | 35.0% | |
AGAGAAATTCGAGAGGAAAA+AGG | + | chr3_1:71944930-71944949 | Msa0373020:CDS | 35.0% | |
TGTTATCACCCCCAATAAAA+AGG | + | chr3_1:71945088-71945107 | Msa0373020:CDS | 35.0% | |
CCCAATAAAAAGGCAAATTC+AGG | + | chr3_1:71945098-71945117 | Msa0373020:CDS | 35.0% | |
ACAGCAAGGTTACATAACAA+TGG | - | chr3_1:71945161-71945180 | None:intergenic | 35.0% | |
! | TATGTTGATTGAAGACAGCA+AGG | - | chr3_1:71945175-71945194 | None:intergenic | 35.0% |
TACTTCTATGAAGCTACTGT+TGG | + | chr3_1:71945487-71945506 | Msa0373020:CDS | 35.0% | |
TTCCCATTATTGGCACTTTA+CGG | + | chr3_1:71945518-71945537 | Msa0373020:CDS | 35.0% | |
TGCAAATTGAAGGAATCTTC+AGG | + | chr3_1:71945569-71945588 | Msa0373020:CDS | 35.0% | |
TGATCCACAAAAAAGACAAG+TGG | - | chr3_1:71945621-71945640 | None:intergenic | 35.0% | |
CAACTACCTCACTAAAAACT+CGG | - | chr3_1:71945866-71945885 | None:intergenic | 35.0% | |
TTATACTGAACCAGATCCAA+GGG | + | chr3_1:71945905-71945924 | Msa0373020:CDS | 35.0% | |
ACAACAAACTACCACACATT+TGG | - | chr3_1:71946025-71946044 | None:intergenic | 35.0% | |
!! | TACACAAGTTGATTTCATGG+TGG | + | chr3_1:71946171-71946190 | Msa0373020:intron | 35.0% |
! | CATGCAATGTGCATATTTTG+AGG | - | chr3_1:71946204-71946223 | None:intergenic | 35.0% |
ATGATTTCATGAGAACTAGC+TGG | + | chr3_1:71946221-71946240 | Msa0373020:intron | 35.0% | |
!! | TATCAGAAAGCTCTAGCTTT+AGG | - | chr3_1:71946357-71946376 | None:intergenic | 35.0% |
GTTCTTACTCTTAATGGTTC+CGG | - | chr3_1:71946400-71946419 | None:intergenic | 35.0% | |
! | GAAAACTCCTCGTCAAATTT+TGG | - | chr3_1:71946538-71946557 | None:intergenic | 35.0% |
! | GTTTTCAAAGAGACAAGAAG+AGG | + | chr3_1:71946552-71946571 | Msa0373020:CDS | 35.0% |
TGAGTAACTAGACAGTATTC+TGG | + | chr3_1:71946593-71946612 | Msa0373020:intron | 35.0% | |
CTATGAAGAAAATGTCATGG+TGG | - | chr3_1:71946641-71946660 | None:intergenic | 35.0% | |
!! | TTTGAAGGTATTGAGATACG+TGG | + | chr3_1:71946687-71946706 | Msa0373020:intron | 35.0% |
!! | TTGAAGGTATTGAGATACGT+GGG | + | chr3_1:71946688-71946707 | Msa0373020:intron | 35.0% |
GTAGACGTGACTAATCAAAA+GGG | + | chr3_1:71946715-71946734 | Msa0373020:CDS | 35.0% | |
CAGATAATTGTGCAAATGGA+TGG | - | chr3_1:71946771-71946790 | None:intergenic | 35.0% | |
CATCCATTTGCACAATTATC+TGG | + | chr3_1:71946769-71946788 | Msa0373020:CDS | 35.0% | |
! | TTACGACTTGCTTCATATCT+TGG | + | chr3_1:71946904-71946923 | Msa0373020:CDS | 35.0% |
TGGATCACATTCACATTCAC+GGG | - | chr3_1:71939756-71939775 | None:intergenic | 40.0% | |
GTGGATCACATTCACATTCA+CGG | - | chr3_1:71939757-71939776 | None:intergenic | 40.0% | |
GGGAAATGGAGAAGAAAGAT+TGG | - | chr3_1:71939779-71939798 | None:intergenic | 40.0% | |
TGGAAAATGTGGAAGGGAAA+TGG | - | chr3_1:71939793-71939812 | None:intergenic | 40.0% | |
AATCTTCTTCACATTCCCTC+AGG | + | chr3_1:71939835-71939854 | Msa0373020:CDS | 40.0% | |
TTCAGTAGATGTAGCTGTAG+AGG | + | chr3_1:71940130-71940149 | Msa0373020:intron | 40.0% | |
AGCTACCAAAAGGAGAAACA+TGG | + | chr3_1:71940159-71940178 | Msa0373020:CDS | 40.0% | |
! | ACTGACCATGTTTCTCCTTT+TGG | - | chr3_1:71940167-71940186 | None:intergenic | 40.0% |
TGGTCAGTTCACAAATTTGG+TGG | + | chr3_1:71940179-71940198 | Msa0373020:CDS | 40.0% | |
! | CAAATTTGGTGGAACATGTG+TGG | + | chr3_1:71940190-71940209 | Msa0373020:CDS | 40.0% |
GATGTATGATCTCATCCACA+AGG | + | chr3_1:71940313-71940332 | Msa0373020:CDS | 40.0% | |
ACGGCACAAGAATTGTTTGA+TGG | + | chr3_1:71940398-71940417 | Msa0373020:CDS | 40.0% | |
TCTTTAGTCTCTGTCTCGTA+AGG | + | chr3_1:71940532-71940551 | Msa0373020:intron | 40.0% | |
ACGATCAAAGTAGAGCAACT+TGG | - | chr3_1:71941142-71941161 | None:intergenic | 40.0% | |
!! | TACAGACACTAAGGCACTTT+TGG | - | chr3_1:71941216-71941235 | None:intergenic | 40.0% |
TTGGTGTACTTGTGTGCATA+TGG | + | chr3_1:71941311-71941330 | Msa0373020:intron | 40.0% | |
GATCAAAGGAGTTTCTGTCT+TGG | + | chr3_1:71941351-71941370 | Msa0373020:intron | 40.0% | |
!! | CGTGGAAGAGCATTACAAAA+AGG | + | chr3_1:71941542-71941561 | Msa0373020:intron | 40.0% |
AACAGGATCACGGTTAAGAA+AGG | - | chr3_1:71941634-71941653 | None:intergenic | 40.0% | |
TCCCACAACTAAGTCAGTAA+AGG | - | chr3_1:71941894-71941913 | None:intergenic | 40.0% | |
TAATCCAAAATTTGGCCGAG+AGG | - | chr3_1:71942012-71942031 | None:intergenic | 40.0% | |
! | CGGCCAAATTTTGGATTACT+AGG | + | chr3_1:71942014-71942033 | Msa0373020:intron | 40.0% |
TGATTTCCCTGAGAACCATA+GGG | + | chr3_1:71942039-71942058 | Msa0373020:intron | 40.0% | |
TCTTAACCCTATGGTTCTCA+GGG | - | chr3_1:71942048-71942067 | None:intergenic | 40.0% | |
ATCTTAACCCTATGGTTCTC+AGG | - | chr3_1:71942049-71942068 | None:intergenic | 40.0% | |
TTCCTTTCTACTGTGCAGAA+AGG | + | chr3_1:71942111-71942130 | Msa0373020:intron | 40.0% | |
TCCTTTCTACTGTGCAGAAA+GGG | + | chr3_1:71942112-71942131 | Msa0373020:intron | 40.0% | |
CACGAGTAGGATTTACAATG+AGG | - | chr3_1:71942170-71942189 | None:intergenic | 40.0% | |
TCAACTTGATCATCACGAGT+AGG | - | chr3_1:71942183-71942202 | None:intergenic | 40.0% | |
!! | AGAGTAGTGGGAATGTTTTG+AGG | - | chr3_1:71942300-71942319 | None:intergenic | 40.0% |
AATTATGGGCGCGATATTCA+GGG | + | chr3_1:71942350-71942369 | Msa0373020:CDS | 40.0% | |
! | CTGCTTCTTATTTCATGTGC+TGG | + | chr3_1:71942440-71942459 | Msa0373020:intron | 40.0% |
GAAGACACTGTCTTATCAAG+AGG | + | chr3_1:71942672-71942691 | Msa0373020:CDS | 40.0% | |
! | ACTGTCTTATCAAGAGGCAT+GGG | + | chr3_1:71942678-71942697 | Msa0373020:CDS | 40.0% |
ATAACAGGACTAATTGTGCG+TGG | - | chr3_1:71942825-71942844 | None:intergenic | 40.0% | |
! | ATTTTCAACACCTCTGCTTC+TGG | + | chr3_1:71942876-71942895 | Msa0373020:CDS | 40.0% |
AATAGAAGGATGGCAGATCT+TGG | - | chr3_1:71942904-71942923 | None:intergenic | 40.0% | |
! | TTTTGTAGAACTGGAATGGC+TGG | + | chr3_1:71943140-71943159 | Msa0373020:intron | 40.0% |
! | TGCGCTAAAAATAGTACTGG+CGG | - | chr3_1:71943177-71943196 | None:intergenic | 40.0% |
TTTAGCGCAGTAAAAGAGGT+TGG | + | chr3_1:71943188-71943207 | Msa0373020:CDS | 40.0% | |
AACTGTGGATAAACAAGGGA+GGG | - | chr3_1:71943264-71943283 | None:intergenic | 40.0% | |
TAACTGTGGATAAACAAGGG+AGG | - | chr3_1:71943265-71943284 | None:intergenic | 40.0% | |
AAAAGCTATAGCTGAGGTGT+TGG | + | chr3_1:71943380-71943399 | Msa0373020:CDS | 40.0% | |
CTGAGCCAATGCATTGAAAA+GGG | - | chr3_1:71943679-71943698 | None:intergenic | 40.0% | |
AACAACCTTGTGCTATAGCA+AGG | - | chr3_1:71944077-71944096 | None:intergenic | 40.0% | |
AGATTCTATAAAGGCTCTGC+GGG | + | chr3_1:71944131-71944150 | Msa0373020:CDS | 40.0% | |
TTATGACTCACAAACCACCA+TGG | + | chr3_1:71944170-71944189 | Msa0373020:CDS | 40.0% | |
CACACTACTTGATCAGCTAA+GGG | + | chr3_1:71944227-71944246 | Msa0373020:CDS | 40.0% | |
TAGGGATCCAACAAGCATAA+TGG | + | chr3_1:71944376-71944395 | Msa0373020:intron | 40.0% | |
GCTAAATCCCTTGAATGCTA+AGG | + | chr3_1:71944545-71944564 | Msa0373020:intron | 40.0% | |
ACAGGTGAATATCGAGAGTA+AGG | - | chr3_1:71944752-71944771 | None:intergenic | 40.0% | |
CTCGATATTCACCTGTTGAT+AGG | + | chr3_1:71944756-71944775 | Msa0373020:intron | 40.0% | |
AAAGTGGAGAGAAATTCGAG+AGG | + | chr3_1:71944923-71944942 | Msa0373020:CDS | 40.0% | |
CAGTCTACTAAAACCGTGTT+TGG | - | chr3_1:71945011-71945030 | None:intergenic | 40.0% | |
!! | ATCATAATGGCTTGCTATGG+CGG | - | chr3_1:71945045-71945064 | None:intergenic | 40.0% |
!! | GTCATCATAATGGCTTGCTA+TGG | - | chr3_1:71945048-71945067 | None:intergenic | 40.0% |
TAGCAAGCCATTATGATGAC+TGG | + | chr3_1:71945048-71945067 | Msa0373020:CDS | 40.0% | |
AAATTCAGGACCACTTAGTG+AGG | + | chr3_1:71945112-71945131 | Msa0373020:CDS | 40.0% | |
ATCGTGTTTACCTCACTAAG+TGG | - | chr3_1:71945125-71945144 | None:intergenic | 40.0% | |
AAATTGAGATCCCATACCAG+TGG | + | chr3_1:71945213-71945232 | Msa0373020:intron | 40.0% | |
ACAACATTTGCCACTGGTAT+GGG | - | chr3_1:71945226-71945245 | None:intergenic | 40.0% | |
AACAACATTTGCCACTGGTA+TGG | - | chr3_1:71945227-71945246 | None:intergenic | 40.0% | |
ATACCAGTGGCAAATGTTGT+TGG | + | chr3_1:71945226-71945245 | Msa0373020:intron | 40.0% | |
AAACCAACAACATTTGCCAC+TGG | - | chr3_1:71945232-71945251 | None:intergenic | 40.0% | |
CTCTCTGCTTCTAGTATTTG+AGG | + | chr3_1:71945431-71945450 | Msa0373020:intron | 40.0% | |
TGAGGTTAAGAGCTCTTCAA+AGG | + | chr3_1:71945449-71945468 | Msa0373020:CDS | 40.0% | |
TCCCATTATTGGCACTTTAC+GGG | + | chr3_1:71945519-71945538 | Msa0373020:CDS | 40.0% | |
!!! | TCCTCCACTTGTCTTTTTTG+TGG | + | chr3_1:71945614-71945633 | Msa0373020:intron | 40.0% |
TCCACAAAAAAGACAAGTGG+AGG | - | chr3_1:71945618-71945637 | None:intergenic | 40.0% | |
! | GAAAAGTGTGGATAGACAGT+TGG | - | chr3_1:71945688-71945707 | None:intergenic | 40.0% |
! | CACACTTTTCCCTTGTTCAA+GGG | + | chr3_1:71945698-71945717 | Msa0373020:intron | 40.0% |
GTTATACTGAACCAGATCCA+AGG | + | chr3_1:71945904-71945923 | Msa0373020:CDS | 40.0% | |
GTCGAATTAAGCCAAATGTG+TGG | + | chr3_1:71946011-71946030 | Msa0373020:intron | 40.0% | |
TACAGGTGATAATTCTTGCG+AGG | + | chr3_1:71946323-71946342 | Msa0373020:intron | 40.0% | |
ACAGGTGATAATTCTTGCGA+GGG | + | chr3_1:71946324-71946343 | Msa0373020:intron | 40.0% | |
ATAATTCTTGCGAGGGAATC+TGG | + | chr3_1:71946331-71946350 | Msa0373020:CDS | 40.0% | |
GCTAGAGCTTTCTGATATTC+CGG | + | chr3_1:71946360-71946379 | Msa0373020:CDS | 40.0% | |
GGTAGACGTGACTAATCAAA+AGG | + | chr3_1:71946714-71946733 | Msa0373020:CDS | 40.0% | |
CGTGACTAATCAAAAGGGAA+TGG | + | chr3_1:71946720-71946739 | Msa0373020:CDS | 40.0% | |
GAGCCAGATAATTGTGCAAA+TGG | - | chr3_1:71946775-71946794 | None:intergenic | 40.0% | |
GGATCACATTCACATTCACG+GGG | - | chr3_1:71939755-71939774 | None:intergenic | 45.0% | |
TTGTTGTGGCGTGGAAAATG+TGG | - | chr3_1:71939804-71939823 | None:intergenic | 45.0% | |
!! | ACACTAAGGCACTTTTGGCA+AGG | - | chr3_1:71941211-71941230 | None:intergenic | 45.0% |
GCACACAAGTACACCAAAAC+AGG | - | chr3_1:71941308-71941327 | None:intergenic | 45.0% | |
CACGGTTAAGAAAGGACCTT+AGG | - | chr3_1:71941626-71941645 | None:intergenic | 45.0% | |
CACACTTAATACCTTGCAGC+TGG | + | chr3_1:71941854-71941873 | Msa0373020:intron | 45.0% | |
! | ACTGACTTAGTTGTGGGACA+TGG | + | chr3_1:71941896-71941915 | Msa0373020:CDS | 45.0% |
CTGACTTAGTTGTGGGACAT+GGG | + | chr3_1:71941897-71941916 | Msa0373020:CDS | 45.0% | |
TGACTTAGTTGTGGGACATG+GGG | + | chr3_1:71941898-71941917 | Msa0373020:CDS | 45.0% | |
! | CTTACCTCTCGGCCAAATTT+TGG | + | chr3_1:71942005-71942024 | Msa0373020:intron | 45.0% |
CTGATTTCCCTGAGAACCAT+AGG | + | chr3_1:71942038-71942057 | Msa0373020:intron | 45.0% | |
TCCCTTTCTGCACAGTAGAA+AGG | - | chr3_1:71942116-71942135 | None:intergenic | 45.0% | |
CTTGTGTCCATCCATTTGCA+GGG | - | chr3_1:71942141-71942160 | None:intergenic | 45.0% | |
CTGCAAATGGATGGACACAA+GGG | + | chr3_1:71942140-71942159 | Msa0373020:CDS | 45.0% | |
CCATCTCTCTTGAGAGTAGT+GGG | - | chr3_1:71942312-71942331 | None:intergenic | 45.0% | |
TCCATCTCTCTTGAGAGTAG+TGG | - | chr3_1:71942313-71942332 | None:intergenic | 45.0% | |
TGACTTCTCCGCAGCAATTA+TGG | + | chr3_1:71942335-71942354 | Msa0373020:CDS | 45.0% | |
GACTTCTCCGCAGCAATTAT+GGG | + | chr3_1:71942336-71942355 | Msa0373020:CDS | 45.0% | |
CAATTATGGGCGCGATATTC+AGG | + | chr3_1:71942349-71942368 | Msa0373020:CDS | 45.0% | |
ACCATTTGGACCGATGTTGA+TGG | + | chr3_1:71942384-71942403 | Msa0373020:CDS | 45.0% | |
ACCATCAACATCGGTCCAAA+TGG | - | chr3_1:71942388-71942407 | None:intergenic | 45.0% | |
!! | TGTGCTGGTTTAACCATCAG+TGG | + | chr3_1:71942455-71942474 | Msa0373020:intron | 45.0% |
CACTGTCTTATCAAGAGGCA+TGG | + | chr3_1:71942677-71942696 | Msa0373020:CDS | 45.0% | |
! | TTATCAAGAGGCATGGGAGA+TGG | + | chr3_1:71942684-71942703 | Msa0373020:CDS | 45.0% |
GTAAGTTGCACACTGGATAG+TGG | + | chr3_1:71942706-71942725 | Msa0373020:intron | 45.0% | |
GGTATGCCATAGCGAATAAC+AGG | - | chr3_1:71942840-71942859 | None:intergenic | 45.0% | |
!! | AAAATAGTACTGGCGGTACC+TGG | - | chr3_1:71943170-71943189 | None:intergenic | 45.0% |
GGGAGGGAAACAACAAAAAC+TGG | - | chr3_1:71943248-71943267 | None:intergenic | 45.0% | |
!! | TTTGACAGCGCTTTGTTTGC+TGG | + | chr3_1:71943411-71943430 | Msa0373020:CDS | 45.0% |
!! | TTGACAGCGCTTTGTTTGCT+GGG | + | chr3_1:71943412-71943431 | Msa0373020:CDS | 45.0% |
AATGACTGCAACCTGAGAAG+TGG | - | chr3_1:71943592-71943611 | None:intergenic | 45.0% | |
!!! | TGCAGTATTTTGGCAGCTGT+TGG | + | chr3_1:71943618-71943637 | Msa0373020:CDS | 45.0% |
!!! | CTGGAGTACTTGCCATTTTC+TGG | - | chr3_1:71943644-71943663 | None:intergenic | 45.0% |
CAGAAAATGGCAAGTACTCC+AGG | + | chr3_1:71943642-71943661 | Msa0373020:CDS | 45.0% | |
! | TGCCACCCTTTTCAATGCAT+TGG | + | chr3_1:71943671-71943690 | Msa0373020:CDS | 45.0% |
AGCCAATGCATTGAAAAGGG+TGG | - | chr3_1:71943676-71943695 | None:intergenic | 45.0% | |
CCTGAGCCAATGCATTGAAA+AGG | - | chr3_1:71943680-71943699 | None:intergenic | 45.0% | |
!!! | CCTTTTCAATGCATTGGCTC+AGG | + | chr3_1:71943677-71943696 | Msa0373020:CDS | 45.0% |
TCACAAACCACCATGGCAAT+GGG | + | chr3_1:71944177-71944196 | Msa0373020:CDS | 45.0% | |
AATTATGCCCATTGCCATGG+TGG | - | chr3_1:71944187-71944206 | None:intergenic | 45.0% | |
ACCATGGCAATGGGCATAAT+TGG | + | chr3_1:71944186-71944205 | Msa0373020:CDS | 45.0% | |
TCCAATTATGCCCATTGCCA+TGG | - | chr3_1:71944190-71944209 | None:intergenic | 45.0% | |
AGTGTGCTCCCAATTAATCC+AGG | - | chr3_1:71944213-71944232 | None:intergenic | 45.0% | |
GCACACTACTTGATCAGCTA+AGG | + | chr3_1:71944226-71944245 | Msa0373020:CDS | 45.0% | |
ACTTGATCAGCTAAGGGATC+AGG | + | chr3_1:71944233-71944252 | Msa0373020:CDS | 45.0% | |
TGGGAAGCCATTATGCTTGT+TGG | - | chr3_1:71944386-71944405 | None:intergenic | 45.0% | |
CATAATGGCTTCCCAATCGA+TGG | + | chr3_1:71944391-71944410 | Msa0373020:intron | 45.0% | |
! | TTTGCGTGTAATGGGGATCA+TGG | + | chr3_1:71944475-71944494 | Msa0373020:CDS | 45.0% |
! | TTGCGTGTAATGGGGATCAT+GGG | + | chr3_1:71944476-71944495 | Msa0373020:CDS | 45.0% |
!! | TCACAGCGATAAGGGTACTT+TGG | - | chr3_1:71944725-71944744 | None:intergenic | 45.0% |
AAGGAGAGTCACAGCGATAA+GGG | - | chr3_1:71944733-71944752 | None:intergenic | 45.0% | |
TAAGGAGAGTCACAGCGATA+AGG | - | chr3_1:71944734-71944753 | None:intergenic | 45.0% | |
TTGATATGCAGTGTGCATCC+TGG | + | chr3_1:71944788-71944807 | Msa0373020:intron | 45.0% | |
TTATTGCAGGGGAATCGACT+TGG | + | chr3_1:71944899-71944918 | Msa0373020:intron | 45.0% | |
TCGAGAGGAAAAAGGTGAAG+CGG | + | chr3_1:71944938-71944957 | Msa0373020:CDS | 45.0% | |
AAAAGGTGAAGCGGCTGATT+TGG | + | chr3_1:71944947-71944966 | Msa0373020:CDS | 45.0% | |
TAAACACGATGTCCTTTCGC+TGG | + | chr3_1:71945135-71945154 | Msa0373020:intron | 45.0% | |
ACATAACAATGGCCAGCGAA+AGG | - | chr3_1:71945150-71945169 | None:intergenic | 45.0% | |
TATGAAGCTACTGTTGGAGC+TGG | + | chr3_1:71945493-71945512 | Msa0373020:CDS | 45.0% | |
! | CCCCGTAAAGTGCCAATAAT+GGG | - | chr3_1:71945523-71945542 | None:intergenic | 45.0% |
CCCATTATTGGCACTTTACG+GGG | + | chr3_1:71945520-71945539 | Msa0373020:CDS | 45.0% | |
!!! | TTTTGTCACCGGTTTCGAGA+AGG | - | chr3_1:71945546-71945565 | None:intergenic | 45.0% |
CCTTGAACAAGGGAAAAGTG+TGG | - | chr3_1:71945700-71945719 | None:intergenic | 45.0% | |
! | CCACACTTTTCCCTTGTTCA+AGG | + | chr3_1:71945697-71945716 | Msa0373020:intron | 45.0% |
TGAGGTAGTTGCTGAAGCAA+AGG | + | chr3_1:71945875-71945894 | Msa0373020:CDS | 45.0% | |
TGGAACTGACGTAGCAAGAA+AGG | + | chr3_1:71945938-71945957 | Msa0373020:CDS | 45.0% | |
TCCGGTTGAAAATCTTGTGC+CGG | + | chr3_1:71946378-71946397 | Msa0373020:CDS | 45.0% | |
! | TCCGGCACAAGATTTTCAAC+CGG | - | chr3_1:71946382-71946401 | None:intergenic | 45.0% |
CGAGCTACGAAGATACAAGA+AGG | + | chr3_1:71946744-71946763 | Msa0373020:CDS | 45.0% | |
CTCACTCACTCACTGCCAAA+TGG | + | chr3_1:71939713-71939732 | Msa0373020:exon | 50.0% | |
GTGGCGTGGAAAATGTGGAA+GGG | - | chr3_1:71939799-71939818 | None:intergenic | 50.0% | |
TGTGGCGTGGAAAATGTGGA+AGG | - | chr3_1:71939800-71939819 | None:intergenic | 50.0% | |
AAGGTGAAGTTGTTGTGGCG+TGG | - | chr3_1:71939813-71939832 | None:intergenic | 50.0% | |
CTTGGTGAGTCTTTCCTCCA+TGG | - | chr3_1:71939993-71940012 | None:intergenic | 50.0% | |
TATCCTGAGCTTCAGCCTTG+TGG | - | chr3_1:71940331-71940350 | None:intergenic | 50.0% | |
ACAGACATGTGCAGTTGACG+TGG | + | chr3_1:71941524-71941543 | Msa0373020:intron | 50.0% | |
GCCGGACTTTACTTACCTCT+CGG | + | chr3_1:71941994-71942013 | Msa0373020:intron | 50.0% | |
GCCGAGAGGTAAGTAAAGTC+CGG | - | chr3_1:71941998-71942017 | None:intergenic | 50.0% | |
AGAAAGGGACTCCCTGCAAA+TGG | + | chr3_1:71942127-71942146 | Msa0373020:intron | 50.0% | |
CCTTGTGTCCATCCATTTGC+AGG | - | chr3_1:71942142-71942161 | None:intergenic | 50.0% | |
CCTGCAAATGGATGGACACA+AGG | + | chr3_1:71942139-71942158 | Msa0373020:CDS | 50.0% | |
CCCACTACTCTCAAGAGAGA+TGG | + | chr3_1:71942309-71942328 | Msa0373020:CDS | 50.0% | |
TATCGCGCCCATAATTGCTG+CGG | - | chr3_1:71942346-71942365 | None:intergenic | 50.0% | |
GGAGATGGTAAGTTGCACAC+TGG | + | chr3_1:71942699-71942718 | Msa0373020:intron | 50.0% | |
GATCTTGGTTCCAGAAGCAG+AGG | - | chr3_1:71942889-71942908 | None:intergenic | 50.0% | |
! | GTTTGCTGGGCGTATTTCTC+AGG | + | chr3_1:71943425-71943444 | Msa0373020:CDS | 50.0% |
AAAAGGGTGGCACTAACTCC+TGG | - | chr3_1:71943663-71943682 | None:intergenic | 50.0% | |
ACCAGCCCCTGGACATTAAA+AGG | + | chr3_1:71943839-71943858 | Msa0373020:intron | 50.0% | |
! | ACCTTTTAATGTCCAGGGGC+TGG | - | chr3_1:71943843-71943862 | None:intergenic | 50.0% |
CTCACAAACCACCATGGCAA+TGG | + | chr3_1:71944176-71944195 | Msa0373020:CDS | 50.0% | |
GCAATGGGCATAATTGGACC+TGG | + | chr3_1:71944192-71944211 | Msa0373020:CDS | 50.0% | |
!! | GGGGAATCGACTTGGTAAAG+TGG | + | chr3_1:71944907-71944926 | Msa0373020:intron | 50.0% |
TGCGCAGCCAGTCATCATAA+TGG | - | chr3_1:71945058-71945077 | None:intergenic | 50.0% | |
! | TTATGATGACTGGCTGCGCA+AGG | + | chr3_1:71945058-71945077 | Msa0373020:CDS | 50.0% |
! | TATGATGACTGGCTGCGCAA+GGG | + | chr3_1:71945059-71945078 | Msa0373020:CDS | 50.0% |
!! | GGAGCTGGTCTTCCCATTAT+TGG | + | chr3_1:71945508-71945527 | Msa0373020:CDS | 50.0% |
! | GCCCCGTAAAGTGCCAATAA+TGG | - | chr3_1:71945524-71945543 | None:intergenic | 50.0% |
!!! | GGATGGCCGAGTTTTTAGTG+AGG | + | chr3_1:71945857-71945876 | Msa0373020:CDS | 50.0% |
GTTGCTGAAGCAAAGGAAGC+AGG | + | chr3_1:71945882-71945901 | Msa0373020:CDS | 50.0% | |
GACAGATCATCCCTTGGATC+TGG | - | chr3_1:71945918-71945937 | None:intergenic | 50.0% | |
GATCCAAGGGATGATCTGTC+TGG | + | chr3_1:71945918-71945937 | Msa0373020:CDS | 50.0% | |
GTTCCAGACAGATCATCCCT+TGG | - | chr3_1:71945924-71945943 | None:intergenic | 50.0% | |
! | GGTATTGAGATACGTGGGAG+TGG | + | chr3_1:71946693-71946712 | Msa0373020:intron | 50.0% |
CATCCACAAGGCTGAAGCTC+AGG | + | chr3_1:71940325-71940344 | Msa0373020:CDS | 55.0% | |
CTGTAGCATGACCAGCTGCA+AGG | - | chr3_1:71941868-71941887 | None:intergenic | 55.0% | |
AGGGACTCCCTGCAAATGGA+TGG | + | chr3_1:71942131-71942150 | Msa0373020:CDS | 55.0% | |
GGGCTCGTCAAGTCACCATT+TGG | + | chr3_1:71942370-71942389 | Msa0373020:CDS | 55.0% | |
ACTGGAATGGCTGGTGTTCC+AGG | + | chr3_1:71943149-71943168 | Msa0373020:CDS | 55.0% | |
GGCAGCTGTTGGCCAGAAAA+TGG | + | chr3_1:71943629-71943648 | Msa0373020:CDS | 55.0% | |
TTACGGGGCCTTCTCGAAAC+CGG | + | chr3_1:71945535-71945554 | Msa0373020:CDS | 55.0% | |
CAAGAAGAGGCTGACACTGC+TGG | + | chr3_1:71946565-71946584 | Msa0373020:CDS | 55.0% | |
CATCAGCCTCTGATAGTCCG+TGG | + | chr3_1:71946832-71946851 | Msa0373020:CDS | 55.0% | |
TTGTGGGACATGGGGAGCTG+TGG | + | chr3_1:71941906-71941925 | Msa0373020:CDS | 60.0% | |
!! | CGATGGACTATACCAGCCCC+TGG | + | chr3_1:71943828-71943847 | Msa0373020:intron | 60.0% |
! | CCTGGTCCACGGACTATCAG+AGG | - | chr3_1:71946841-71946860 | None:intergenic | 60.0% |
CCTCTGATAGTCCGTGGACC+AGG | + | chr3_1:71946838-71946857 | Msa0373020:CDS | 60.0% | |
ATAGTCCGTGGACCAGGAGC+TGG | + | chr3_1:71946844-71946863 | Msa0373020:CDS | 60.0% | |
! | GTGACTTGTGCACCAGCTCC+TGG | - | chr3_1:71946859-71946878 | None:intergenic | 60.0% |
GCTGGTGCACAAGTCACAGC+TGG | + | chr3_1:71946862-71946881 | Msa0373020:CDS | 60.0% | |
GGTGCACAAGTCACAGCTGG+TGG | + | chr3_1:71946865-71946884 | Msa0373020:CDS | 60.0% | |
GTGCACCAGCTCCTGGTCCA+CGG | - | chr3_1:71946852-71946871 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_1 | gene | 71939668 | 71947186 | 71939668 | ID=Msa0373020;Name=Msa0373020 |
chr3_1 | mRNA | 71939668 | 71947186 | 71939668 | ID=Msa0373020-mRNA-1;Parent=Msa0373020;Name=Msa0373020-mRNA-1;_AED=0.13;_eAED=0.13;_QI=64|0.94|0.94|1|1|1|18|247|904 |
chr3_1 | exon | 71939668 | 71939856 | 71939668 | ID=Msa0373020-mRNA-1:exon:15870;Parent=Msa0373020-mRNA-1 |
chr3_1 | exon | 71939986 | 71940038 | 71939986 | ID=Msa0373020-mRNA-1:exon:15871;Parent=Msa0373020-mRNA-1 |
chr3_1 | exon | 71940135 | 71940500 | 71940135 | ID=Msa0373020-mRNA-1:exon:15872;Parent=Msa0373020-mRNA-1 |
chr3_1 | exon | 71941873 | 71941961 | 71941873 | ID=Msa0373020-mRNA-1:exon:15873;Parent=Msa0373020-mRNA-1 |
chr3_1 | exon | 71942129 | 71942432 | 71942129 | ID=Msa0373020-mRNA-1:exon:15874;Parent=Msa0373020-mRNA-1 |
chr3_1 | exon | 71942653 | 71942705 | 71942653 | ID=Msa0373020-mRNA-1:exon:15875;Parent=Msa0373020-mRNA-1 |
chr3_1 | exon | 71942795 | 71943009 | 71942795 | ID=Msa0373020-mRNA-1:exon:15876;Parent=Msa0373020-mRNA-1 |
chr3_1 | exon | 71943148 | 71943235 | 71943148 | ID=Msa0373020-mRNA-1:exon:15877;Parent=Msa0373020-mRNA-1 |
chr3_1 | exon | 71943333 | 71943446 | 71943333 | ID=Msa0373020-mRNA-1:exon:15878;Parent=Msa0373020-mRNA-1 |
chr3_1 | exon | 71943600 | 71943698 | 71943600 | ID=Msa0373020-mRNA-1:exon:15879;Parent=Msa0373020-mRNA-1 |
chr3_1 | exon | 71944060 | 71944254 | 71944060 | ID=Msa0373020-mRNA-1:exon:15880;Parent=Msa0373020-mRNA-1 |
chr3_1 | exon | 71944443 | 71944525 | 71944443 | ID=Msa0373020-mRNA-1:exon:15881;Parent=Msa0373020-mRNA-1 |
chr3_1 | exon | 71944908 | 71945133 | 71944908 | ID=Msa0373020-mRNA-1:exon:15882;Parent=Msa0373020-mRNA-1 |
chr3_1 | exon | 71945445 | 71945590 | 71945445 | ID=Msa0373020-mRNA-1:exon:15883;Parent=Msa0373020-mRNA-1 |
chr3_1 | exon | 71945824 | 71945959 | 71945824 | ID=Msa0373020-mRNA-1:exon:15884;Parent=Msa0373020-mRNA-1 |
chr3_1 | exon | 71946328 | 71946411 | 71946328 | ID=Msa0373020-mRNA-1:exon:15885;Parent=Msa0373020-mRNA-1 |
chr3_1 | exon | 71946499 | 71946591 | 71946499 | ID=Msa0373020-mRNA-1:exon:15886;Parent=Msa0373020-mRNA-1 |
chr3_1 | exon | 71946694 | 71947186 | 71946694 | ID=Msa0373020-mRNA-1:exon:15887;Parent=Msa0373020-mRNA-1 |
chr3_1 | five_prime_UTR | 71939668 | 71939731 | 71939668 | ID=Msa0373020-mRNA-1:five_prime_utr;Parent=Msa0373020-mRNA-1 |
chr3_1 | CDS | 71939732 | 71939856 | 71939732 | ID=Msa0373020-mRNA-1:cds;Parent=Msa0373020-mRNA-1 |
chr3_1 | CDS | 71939986 | 71940038 | 71939986 | ID=Msa0373020-mRNA-1:cds;Parent=Msa0373020-mRNA-1 |
chr3_1 | CDS | 71940135 | 71940500 | 71940135 | ID=Msa0373020-mRNA-1:cds;Parent=Msa0373020-mRNA-1 |
chr3_1 | CDS | 71941873 | 71941961 | 71941873 | ID=Msa0373020-mRNA-1:cds;Parent=Msa0373020-mRNA-1 |
chr3_1 | CDS | 71942129 | 71942432 | 71942129 | ID=Msa0373020-mRNA-1:cds;Parent=Msa0373020-mRNA-1 |
chr3_1 | CDS | 71942653 | 71942705 | 71942653 | ID=Msa0373020-mRNA-1:cds;Parent=Msa0373020-mRNA-1 |
chr3_1 | CDS | 71942795 | 71943009 | 71942795 | ID=Msa0373020-mRNA-1:cds;Parent=Msa0373020-mRNA-1 |
chr3_1 | CDS | 71943148 | 71943235 | 71943148 | ID=Msa0373020-mRNA-1:cds;Parent=Msa0373020-mRNA-1 |
chr3_1 | CDS | 71943333 | 71943446 | 71943333 | ID=Msa0373020-mRNA-1:cds;Parent=Msa0373020-mRNA-1 |
chr3_1 | CDS | 71943600 | 71943698 | 71943600 | ID=Msa0373020-mRNA-1:cds;Parent=Msa0373020-mRNA-1 |
chr3_1 | CDS | 71944060 | 71944254 | 71944060 | ID=Msa0373020-mRNA-1:cds;Parent=Msa0373020-mRNA-1 |
chr3_1 | CDS | 71944443 | 71944525 | 71944443 | ID=Msa0373020-mRNA-1:cds;Parent=Msa0373020-mRNA-1 |
chr3_1 | CDS | 71944908 | 71945133 | 71944908 | ID=Msa0373020-mRNA-1:cds;Parent=Msa0373020-mRNA-1 |
chr3_1 | CDS | 71945445 | 71945590 | 71945445 | ID=Msa0373020-mRNA-1:cds;Parent=Msa0373020-mRNA-1 |
chr3_1 | CDS | 71945824 | 71945959 | 71945824 | ID=Msa0373020-mRNA-1:cds;Parent=Msa0373020-mRNA-1 |
chr3_1 | CDS | 71946328 | 71946411 | 71946328 | ID=Msa0373020-mRNA-1:cds;Parent=Msa0373020-mRNA-1 |
chr3_1 | CDS | 71946499 | 71946591 | 71946499 | ID=Msa0373020-mRNA-1:cds;Parent=Msa0373020-mRNA-1 |
chr3_1 | CDS | 71946694 | 71946939 | 71946694 | ID=Msa0373020-mRNA-1:cds;Parent=Msa0373020-mRNA-1 |
chr3_1 | three_prime_UTR | 71946940 | 71947186 | 71946940 | ID=Msa0373020-mRNA-1:three_prime_utr;Parent=Msa0373020-mRNA-1 |
Gene Sequence |
Protein sequence |