AlfalfaGEDB | Msa0467560

M. sativa cultivar zhongmu-4 / Msa0467560

KEGG: K12524
GO: GO:0003674 GO:0003824 GO:0004072 GO:0004412 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009069 GO:0009070 GO:0009090 GO:0009092 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016301 GO:0016310 GO:0016491 GO:0016614 GO:0016616 GO:0016740 GO:0016772 GO:0016774 GO:0019202 GO:0019752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0055114 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607
PFAM: PF00696.31

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0467560	XP_039687528.1	97.250	909	18	4	1	908	1	903	0.0	1810

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0467560	sp\|O81852\|AKH2_ARATH	77.883	841	184	1	68	908	78	916	0.0	1367

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0467560	G7JAT7	96.930	912	18	5	1	908	1	906	0.0	1805

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0304740	Msa0467560	0.815484	9.026917e-52	-8.615850e-47
Msa0331590	Msa0467560	0.813430	2.569558e-51	-8.615850e-47
Msa0357100	Msa0467560	0.800666	1.295090e-48	-8.615850e-47
Msa0373020	Msa0467560	0.868680	5.451905e-66	-8.615850e-47
Msa0467560	Msa0639850	0.807809	4.215651e-50	-8.615850e-47
Msa0467560	Msa0691020	0.814350	1.611178e-51	-8.615850e-47
Msa0467560	Msa0782970	0.838107	3.500496e-57	-8.615850e-47
Msa0467560	Msa0946120	0.814548	1.456431e-51	-8.615850e-47
Msa0467560	Msa0962880	0.807033	6.157628e-50	-8.615850e-47
Msa0467560	Msa1008490	0.802209	6.254717e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0467560	MtrunA17_Chr3g0121961	96.930	912	18	5	1	908	1	906	0.0	1805
Msa0467560	MtrunA17_Chr8g0377971	82.265	874	152	1	38	908	43	916	0.0	1500
Msa0467560	MtrunA17_Chr3g0118521	33.690	374	217	8	549	898	3	369	1.95e-52	188
Msa0467560	MtrunA17_Chr7g0252051	28.395	486	298	13	81	546	81	536	8.02e-50	185
Msa0467560	MtrunA17_Chr6g0461951	27.329	483	309	10	81	547	83	539	2.73e-46	175

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0467560	AT4G19710.2	77.883	841	184	1	68	908	78	916	0.0	1367
Msa0467560	AT1G31230.1	75.501	849	206	1	60	908	65	911	0.0	1318
Msa0467560	AT4G19710.1	76.873	761	174	1	68	828	78	836	0.0	1222
Msa0467560	AT5G21060.3	34.584	373	211	10	554	900	8	373	2.67e-53	191
Msa0467560	AT5G21060.2	34.584	373	211	10	554	900	8	373	3.35e-53	190
Msa0467560	AT5G21060.1	34.133	375	208	11	554	900	8	371	3.54e-53	190
Msa0467560	AT5G13280.1	28.780	549	330	16	28	546	27	544	2.00e-47	179
Msa0467560	AT3G02020.1	28.405	514	313	14	70	563	80	558	5.76e-47	177
Msa0467560	AT5G14060.1	27.586	493	303	13	77	546	81	542	6.69e-46	174
Msa0467560	AT5G14060.2	27.586	493	303	13	77	546	81	542	6.69e-46	174

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Find 197 sgRNAs with CRISPR-Local

Find 445 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCAAAACAACACCATT+TGG	0.446657	3_3:-68945210	None:intergenic
AAAAGCTGTAGCTGAGGTGT+TGG	0.521132	3_3:+68948935	Msa0467560:CDS
AAAAGGGTGGCACTAACTCC+TGG	0.451346	3_3:-68949215	None:intergenic
AAAAGGTGAAGCGGCTGATT+TGG	0.310156	3_3:+68950513	Msa0467560:CDS
AAAATACACTCTTCACTTAC+AGG	0.211167	3_3:+68945511	Msa0467560:CDS
AAAATAGTACTGGCGGTACC+TGG	0.498155	3_3:-68948722	None:intergenic
AAAATATTCCTTATTATAAT+TGG	0.206918	3_3:-68948413	None:intergenic
AAACATTGATTTGCGTGTAA+TGG	0.370904	3_3:+68950032	Msa0467560:CDS
AAAGTGGAGAGAAATTCGAG+AGG	0.631796	3_3:+68950489	Msa0467560:CDS
AAATCATGTTATACCAAACA+CGG	0.611522	3_3:+68950561	Msa0467560:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGCAAAACAACACCATT+TGG	-	chr3_3:68945213-68945232	None:intergenic	30.0%
GTAAAAGAAAAGATACCTGA+GGG	-	chr3_3:68945347-68945366	None:intergenic	30.0%
AGTAAAAGAAAAGATACCTG+AGG	-	chr3_3:68945348-68945367	None:intergenic	30.0%
AACAAGAAAATGTTATGCAG+GGG	-	chr3_3:68945447-68945466	None:intergenic	30.0%
AAAATACACTCTTCACTTAC+AGG	+	chr3_3:68945511-68945530	Msa0467560:CDS	30.0%
ACATGGTCAGTTAACAAATT+TGG	+	chr3_3:68945668-68945687	Msa0467560:CDS	30.0%
TCAAATTTGCATCAAGATGT+TGG	+	chr3_3:68945935-68945954	Msa0467560:CDS	30.0%
ACAACTAAAATAGACCTGTT+TGG	+	chr3_3:68946079-68946098	Msa0467560:intron	30.0%
CAACTAAAATAGACCTGTTT+GGG	+	chr3_3:68946080-68946099	Msa0467560:intron	30.0%
AACTAAAATAGACCTGTTTG+GGG	+	chr3_3:68946081-68946100	Msa0467560:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	68945146	68952791	68945146	ID=Msa0467560;Name=Msa0467560
chr3_3	mRNA	68945146	68952791	68945146	ID=Msa0467560-mRNA-1;Parent=Msa0467560;Name=Msa0467560-mRNA-1;_AED=0.13;_eAED=0.13;_QI=68\|0.94\|0.94\|1\|0.94\|0.89\|19\|256\|908
chr3_3	exon	68945146	68945350	68945146	ID=Msa0467560-mRNA-1:exon:16120;Parent=Msa0467560-mRNA-1
chr3_3	exon	68945480	68945532	68945480	ID=Msa0467560-mRNA-1:exon:16121;Parent=Msa0467560-mRNA-1
chr3_3	exon	68945627	68945992	68945627	ID=Msa0467560-mRNA-1:exon:16122;Parent=Msa0467560-mRNA-1
chr3_3	exon	68947428	68947516	68947428	ID=Msa0467560-mRNA-1:exon:16123;Parent=Msa0467560-mRNA-1
chr3_3	exon	68947684	68947987	68947684	ID=Msa0467560-mRNA-1:exon:16124;Parent=Msa0467560-mRNA-1
chr3_3	exon	68948208	68948260	68948208	ID=Msa0467560-mRNA-1:exon:16125;Parent=Msa0467560-mRNA-1
chr3_3	exon	68948350	68948564	68948350	ID=Msa0467560-mRNA-1:exon:16126;Parent=Msa0467560-mRNA-1
chr3_3	exon	68948703	68948790	68948703	ID=Msa0467560-mRNA-1:exon:16127;Parent=Msa0467560-mRNA-1
chr3_3	exon	68948888	68949001	68948888	ID=Msa0467560-mRNA-1:exon:16128;Parent=Msa0467560-mRNA-1
chr3_3	exon	68949155	68949253	68949155	ID=Msa0467560-mRNA-1:exon:16129;Parent=Msa0467560-mRNA-1
chr3_3	exon	68949626	68949820	68949626	ID=Msa0467560-mRNA-1:exon:16130;Parent=Msa0467560-mRNA-1
chr3_3	exon	68950009	68950091	68950009	ID=Msa0467560-mRNA-1:exon:16131;Parent=Msa0467560-mRNA-1
chr3_3	exon	68950474	68950699	68950474	ID=Msa0467560-mRNA-1:exon:16132;Parent=Msa0467560-mRNA-1
chr3_3	exon	68951010	68951155	68951010	ID=Msa0467560-mRNA-1:exon:16133;Parent=Msa0467560-mRNA-1
chr3_3	exon	68951389	68951524	68951389	ID=Msa0467560-mRNA-1:exon:16134;Parent=Msa0467560-mRNA-1
chr3_3	exon	68951893	68951976	68951893	ID=Msa0467560-mRNA-1:exon:16135;Parent=Msa0467560-mRNA-1
chr3_3	exon	68952064	68952156	68952064	ID=Msa0467560-mRNA-1:exon:16136;Parent=Msa0467560-mRNA-1
chr3_3	exon	68952259	68952532	68952259	ID=Msa0467560-mRNA-1:exon:16137;Parent=Msa0467560-mRNA-1
chr3_3	exon	68952564	68952791	68952564	ID=Msa0467560-mRNA-1:exon:16138;Parent=Msa0467560-mRNA-1
chr3_3	five_prime_UTR	68945146	68945213	68945146	ID=Msa0467560-mRNA-1:five_prime_utr;Parent=Msa0467560-mRNA-1
chr3_3	CDS	68945214	68945350	68945214	ID=Msa0467560-mRNA-1:cds;Parent=Msa0467560-mRNA-1
chr3_3	CDS	68945480	68945532	68945480	ID=Msa0467560-mRNA-1:cds;Parent=Msa0467560-mRNA-1
chr3_3	CDS	68945627	68945992	68945627	ID=Msa0467560-mRNA-1:cds;Parent=Msa0467560-mRNA-1
chr3_3	CDS	68947428	68947516	68947428	ID=Msa0467560-mRNA-1:cds;Parent=Msa0467560-mRNA-1
chr3_3	CDS	68947684	68947987	68947684	ID=Msa0467560-mRNA-1:cds;Parent=Msa0467560-mRNA-1
chr3_3	CDS	68948208	68948260	68948208	ID=Msa0467560-mRNA-1:cds;Parent=Msa0467560-mRNA-1
chr3_3	CDS	68948350	68948564	68948350	ID=Msa0467560-mRNA-1:cds;Parent=Msa0467560-mRNA-1
chr3_3	CDS	68948703	68948790	68948703	ID=Msa0467560-mRNA-1:cds;Parent=Msa0467560-mRNA-1
chr3_3	CDS	68948888	68949001	68948888	ID=Msa0467560-mRNA-1:cds;Parent=Msa0467560-mRNA-1
chr3_3	CDS	68949155	68949253	68949155	ID=Msa0467560-mRNA-1:cds;Parent=Msa0467560-mRNA-1
chr3_3	CDS	68949626	68949820	68949626	ID=Msa0467560-mRNA-1:cds;Parent=Msa0467560-mRNA-1
chr3_3	CDS	68950009	68950091	68950009	ID=Msa0467560-mRNA-1:cds;Parent=Msa0467560-mRNA-1
chr3_3	CDS	68950474	68950699	68950474	ID=Msa0467560-mRNA-1:cds;Parent=Msa0467560-mRNA-1
chr3_3	CDS	68951010	68951155	68951010	ID=Msa0467560-mRNA-1:cds;Parent=Msa0467560-mRNA-1
chr3_3	CDS	68951389	68951524	68951389	ID=Msa0467560-mRNA-1:cds;Parent=Msa0467560-mRNA-1
chr3_3	CDS	68951893	68951976	68951893	ID=Msa0467560-mRNA-1:cds;Parent=Msa0467560-mRNA-1
chr3_3	CDS	68952064	68952156	68952064	ID=Msa0467560-mRNA-1:cds;Parent=Msa0467560-mRNA-1
chr3_3	CDS	68952259	68952504	68952259	ID=Msa0467560-mRNA-1:cds;Parent=Msa0467560-mRNA-1
chr3_3	three_prime_UTR	68952505	68952532	68952505	ID=Msa0467560-mRNA-1:three_prime_utr;Parent=Msa0467560-mRNA-1
chr3_3	three_prime_UTR	68952564	68952791	68952564	ID=Msa0467560-mRNA-1:three_prime_utr;Parent=Msa0467560-mRNA-1

Gene Sequence

>Msa0467560

ATGGTGTTGTTTTGCTTTTGCCCCGTGAATGTGAATGTGAATGTGAATGTGATCCACCAATCTTTCTTCTCCATTTCCCTTCCACATTTTCCACGCCACAACAACTTCACCTTTCAATCTTCTTCACATTCCCTCAGTTTACCATGGAGGAAAGACTCACCAAGAACCAAAATACACTCTTCACTTACAGTAGATGTAGCTGTAGAGGAAAAAAAGCTACCAAAAGGAGAAACATGGTCAGTTAACAAATTTGGTGGAACATGTGTGGGAAGTTCAGCAAGAATAAATAATGTTGCAGATGTAATAATCAATGATGATTCTGAGAGAAAATTAGTAGTGGTTTCTGCTATGTCAAAAGTAACAGATATGATGTATGATCTCATCCACAAGGCTGAAGCTCAGGATAAGTCTTATATATCTGCACTTGATGCTGTTGAAGAGAAGCATAGCTTAACGGCACAAGAATTGTTTGATGGAGATGATCTTGCTACTTTCTTGTCAAATTTGCATCAAGATGTTGGAAATTTAAAGGCAATGCTTCAAGCTATTGACATAGCTGGTCATGCTACAGAATCCTTTACTGACTTAGTTGTGGGACATGGGGAGCTGTGGTCTGCACAGATATTGTCTTTTGTTGTTAAGAAGAAAGGGACTCCCTGCAAATGGATGGACACAAGGGAAGTCCTCATTGTAAATCCTACTCGTGATGATCAAGTTGATCCTGATTACTTGGAAACTGAACAGAGACTTAATAAATGGTACTCTCTTAATCCATCTAAGGTAATCATTGCTACTGGATTTATAGCAAGCACACCTCAAAACATTCCCACTACTCTCAAGAGAGATGGAAGTGACTTCTCTGCAGCAATTATGGGCGCGATATTCAGGGCTCGTCAAGTCACCATTTGGACCGATGTTGATGGTGTGTATAGTGCAGATCCTAGAAAAGTTAGTGATGCTGTGATTTTGAAGACACTGTCTTATCAAGAGGCATGGGAGATGTCTTATTTTGGTGCAAATGTCTTACATCCACGCACAATTAGTCCTGTTATTCGCTATGGCATACCAATTATAATAAGGAATATTTTCAACACCTCTGCTTCTGGAACCAAGATCTGCCATCCTTCTATTATTGAAAATGAAGATAAGAAGATATTAAAAGATTATGTCAAAGGCTTTACAACGATAGACAACTTGGCACTTGTAAATGTAGAAGGAACTGGAATGGCTGGTGTTCCAGGTACCGCCAGTACTATTTTTAGCGCAGTAAAAGAGGTTGGAGCCAATGTTATTATGATATCTCAGGCTAGTAGTGAGCATTCTGTATGTTTTGCTGTGCCTGAGAAAGAAGTAAAAGCTGTAGCTGAGGTGTTGGAATCTATATTTGACAGCGCTTTGTTTGCTGGGCGTATTTCTCAGGTTGCAGTCATTTCAAATTGCAGTATTTTGGCAGCTGTTGGCCAGAAAATGGCAAGTACTCCAGGAGTTAGTGCCACCCTTTTCAATGCATTGGCTCAGGCCAACATAAATATCCTTGCTATAGCACAAGGTTGTTCTGAGTACAATGTTACTGTTGTTCTTAAGCGAGAAGATTCTATAAAGGCTCTGCGGGCTGTCCATTCCAGATTTTATGACTCACAAACCACCATGGCAATGGGCGTAATTGGACCTGGATTAATTGGGAGCACACTACTTGATCAGCTAAGGGATCAGGCAGCAACTTTGAAAGAAGAATCAAACATTGATTTGCGTGTAATGGGGATCATGGGTTCAAAGTCGATGCTCCTTGATAATTTGGGAATCGACTTAGTAAAGTGGAGAGAAATTCGAGAGGAAAAAGGTGAAGCGGCTGATTTGGAAAAATTTGTTCAAAATGTACACGGAAATCATGTTATACCAAACACGGTTTTAGTAGACTGCACAGCTGACTCCGCCATAGCAAGCCATTATGATGACTGGCTGCGCAAGGGAATACATGTTATCACCCCCAATAAAAAGGCAAATTCAGGACCACTTAGTGAGTATTTGAGGTTAAGAGCTCTTCAAAGGCAATCATACACACATTACTTCTATGAAGCTACTGTTGGAGCTGGTCTTCCCATTATTGGCACTTTACGGGGCCTTCTCGAAACTGGTGACAAAATATTGCAAATTGAAGGAATCTTCAGTGGGACATTGAGTTACATCTTTAATAACTTCAAGGATGGCAGAGTTTTTAGTGAGGTAGTTGCTGAAGCAAAGGAAGCAGGTTATACTGAACCAGATCCAAGGGATGATCTGTCTGGAACTGATGTTGCAAGAAAGGTGATAATTCTTGCGAGGGAATCTGGCCTAAAGCTAGAGCTTTCTGATATCCCGGTTGAAAATCTTGTGCCGGAACCATTAAGAGTTAGCGCATCAACTCAAGAGTTTATGCAGAAATTACCAAAATTTGACGAGGAGTTTTCAAAGAGACAAGAAGAGGCTGACACTGCTGGAGAAGTATTGAGATACGTGGGAGTGGTAGACGTGACTAATCAAAAGGGAATGGTCGAGCTACGAAGATACAAGAAGGATCATCCATTTGCACAATTATCTGGCTCAGATAACATCATTGCATTCAGAACAAGAAGATATAGATATCAGCCTCTGATAGTTCGTGGACCAGGAGCTGGTGCACAAGTCACAGCTGGTGGAATATTCAGCGACATTTTGCGACTTGCCTCGTATCTTGGTGCTCCATCTTAG

Protein sequence

>Msa0467560

MVLFCFCPVNVNVNVNVIHQSFFSISLPHFPRHNNFTFQSSSHSLSLPWRKDSPRTKIHSSLTVDVAVEEKKLPKGETWSVNKFGGTCVGSSARINNVADVIINDDSERKLVVVSAMSKVTDMMYDLIHKAEAQDKSYISALDAVEEKHSLTAQELFDGDDLATFLSNLHQDVGNLKAMLQAIDIAGHATESFTDLVVGHGELWSAQILSFVVKKKGTPCKWMDTREVLIVNPTRDDQVDPDYLETEQRLNKWYSLNPSKVIIATGFIASTPQNIPTTLKRDGSDFSAAIMGAIFRARQVTIWTDVDGVYSADPRKVSDAVILKTLSYQEAWEMSYFGANVLHPRTISPVIRYGIPIIIRNIFNTSASGTKICHPSIIENEDKKILKDYVKGFTTIDNLALVNVEGTGMAGVPGTASTIFSAVKEVGANVIMISQASSEHSVCFAVPEKEVKAVAEVLESIFDSALFAGRISQVAVISNCSILAAVGQKMASTPGVSATLFNALAQANINILAIAQGCSEYNVTVVLKREDSIKALRAVHSRFYDSQTTMAMGVIGPGLIGSTLLDQLRDQAATLKEESNIDLRVMGIMGSKSMLLDNLGIDLVKWREIREEKGEAADLEKFVQNVHGNHVIPNTVLVDCTADSAIASHYDDWLRKGIHVITPNKKANSGPLSEYLRLRALQRQSYTHYFYEATVGAGLPIIGTLRGLLETGDKILQIEGIFSGTLSYIFNNFKDGRVFSEVVAEAKEAGYTEPDPRDDLSGTDVARKVIILARESGLKLELSDIPVENLVPEPLRVSASTQEFMQKLPKFDEEFSKRQEEADTAGEVLRYVGVVDVTNQKGMVELRRYKKDHPFAQLSGSDNIIAFRTRRYRYQPLIVRGPGAGAQVTAGGIFSDILRLASYLGAPS*