Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0374140 | XP_003601987.1 | 99.412 | 510 | 3 | 0 | 1 | 510 | 1 | 510 | 0.0 | 1051 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0374140 | sp|Q9SSV4|INO1_NICPA | 92.941 | 510 | 36 | 0 | 1 | 510 | 1 | 510 | 0.0 | 1000 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0374140 | G7J4B5 | 99.412 | 510 | 3 | 0 | 1 | 510 | 1 | 510 | 0.0 | 1051 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0374140 | Msa0423130 | 0.836094 | 1.144291e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0374140 | MtrunA17_Chr3g0124321 | 99.412 | 510 | 3 | 0 | 1 | 510 | 1 | 510 | 0.0 | 1051 |
| Msa0374140 | MtrunA17_Chr8g0382621 | 91.176 | 510 | 45 | 0 | 1 | 510 | 1 | 510 | 0.0 | 983 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0374140 | AT2G22240.1 | 88.627 | 510 | 58 | 0 | 1 | 510 | 1 | 510 | 0.0 | 964 |
| Msa0374140 | AT5G10170.1 | 88.039 | 510 | 61 | 0 | 1 | 510 | 1 | 510 | 0.0 | 959 |
| Msa0374140 | AT4G39800.1 | 88.650 | 511 | 57 | 1 | 1 | 510 | 1 | 511 | 0.0 | 957 |
| Msa0374140 | AT2G22240.3 | 88.000 | 450 | 54 | 0 | 1 | 450 | 1 | 450 | 0.0 | 844 |
| Msa0374140 | AT2G22240.2 | 88.684 | 380 | 43 | 0 | 131 | 510 | 1 | 380 | 0.0 | 718 |
Find 152 sgRNAs with CRISPR-Local
Find 255 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGATATTCATGTCCCTAAAT+TGG | 0.139724 | 3_1:+73369528 | Msa0374140:CDS |
| TAGGATACTAACCCCAATTT+AGG | 0.157622 | 3_1:-73369541 | None:intergenic |
| ACATGAATTCAGGGAATTTA+AGG | 0.214114 | 3_1:+73370673 | Msa0374140:intron |
| CACCAAAACAGATTTCATTT+TGG | 0.237842 | 3_1:-73371065 | None:intergenic |
| TAGGGTAATGCTTGTGGGCT+GGG | 0.247084 | 3_1:+73369644 | Msa0374140:intron |
| AGTCAAGGATCCAAAGTAAT+TGG | 0.258694 | 3_1:-73369844 | None:intergenic |
| ACTTAATGTCTTTGATGATT+TGG | 0.259594 | 3_1:-73370558 | None:intergenic |
| TTTGGCTGCTCCTATTATCT+TGG | 0.260165 | 3_1:+73371655 | Msa0374140:CDS |
| GACCAAAATGAAATCTGTTT+TGG | 0.315009 | 3_1:+73371063 | Msa0374140:CDS |
| AGAACCAAGTCCAAGATAAT+AGG | 0.315065 | 3_1:-73371665 | None:intergenic |
| AAAGCAATTGAGGCCTTATA+TGG | 0.316555 | 3_1:+73370429 | Msa0374140:CDS |
| GTTTGCCATTGCTTGTGTTA+TGG | 0.321854 | 3_1:+73370841 | Msa0374140:CDS |
| GGCTTGTTGAATCTTATCTT+TGG | 0.324221 | 3_1:-73369823 | None:intergenic |
| GATATTCATGTCCCTAAATT+GGG | 0.324625 | 3_1:+73369529 | Msa0374140:CDS |
| TTAGGGTAATGCTTGTGGGC+TGG | 0.326783 | 3_1:+73369643 | Msa0374140:intron |
| AAAAGGAAAATAAAATAAAA+AGG | 0.327687 | 3_1:-73372764 | None:intergenic |
| TGATCATGTTGTAGTCATTA+AGG | 0.330877 | 3_1:+73371437 | Msa0374140:CDS |
| GGAACCATGGATTCCATATA+AGG | 0.336150 | 3_1:-73370442 | None:intergenic |
| CACATGTGAGGACTCCCTTT+TGG | 0.337114 | 3_1:+73371637 | Msa0374140:CDS |
| TGCTCCTATTATCTTGGACT+TGG | 0.337540 | 3_1:+73371661 | Msa0374140:CDS |
| AATCAAACAGTTGTTCTTGA+TGG | 0.339221 | 3_1:-73371014 | None:intergenic |
| CAATTTAGGGACATGAATAT+CGG | 0.345716 | 3_1:-73369527 | None:intergenic |
| TTCTGTCCACAGCAGCAAAA+AGG | 0.352039 | 3_1:-73370790 | None:intergenic |
| AAATAGATAAATATTTATAT+TGG | 0.352496 | 3_1:-73372951 | None:intergenic |
| TTTATCTATTTGTGCTCAAT+TGG | 0.354707 | 3_1:+73372888 | Msa0374140:three_prime_UTR |
| TTTATCTATTTGTGCTCAAT+TGG | 0.354707 | 3_1:+73372963 | Msa0374140:three_prime_UTR |
| AGGATACTAACCCCAATTTA+GGG | 0.368499 | 3_1:-73369540 | None:intergenic |
| CTGATGCCATGGCTAGGGCC+AGG | 0.381997 | 3_1:+73370386 | Msa0374140:CDS |
| ATTCAACAAGCCAATTACTT+TGG | 0.386610 | 3_1:+73369834 | Msa0374140:CDS |
| TCCTTGGAGCGGAAGGTTTG+TGG | 0.393131 | 3_1:-73371342 | None:intergenic |
| CCTTGGAGCGGAAGGTTTGT+GGG | 0.393231 | 3_1:-73371341 | None:intergenic |
| GAATCCATGGTTCCACTTCC+CGG | 0.397208 | 3_1:+73370451 | Msa0374140:CDS |
| GTGGATTTCCTTGTAGGAGC+TGG | 0.403897 | 3_1:+73371085 | Msa0374140:CDS |
| GAGAATGTTCCTTTCATCAA+TGG | 0.416258 | 3_1:+73370863 | Msa0374140:CDS |
| TAACACAAGCAATGGCAAAC+AGG | 0.418453 | 3_1:-73370838 | None:intergenic |
| GTTGCTCTTGGAAATTTCCT+TGG | 0.419538 | 3_1:-73371358 | None:intergenic |
| AAACTAGAAAGTTCTAACTA+TGG | 0.420585 | 3_1:-73372713 | None:intergenic |
| GTCAAAGCAGCGAGCAATGC+TGG | 0.421080 | 3_1:+73372611 | Msa0374140:CDS |
| TCTAGGATCATGTTGTTCTC+TGG | 0.422099 | 3_1:-73372666 | None:intergenic |
| ATTGTGAGTTACAATCATCT+TGG | 0.426878 | 3_1:+73371291 | Msa0374140:CDS |
| AGAAGAAGAAAGAAATGAAA+AGG | 0.428286 | 3_1:-73369304 | None:intergenic |
| ATCGTCAACAACGTTGCTCT+TGG | 0.428897 | 3_1:-73371370 | None:intergenic |
| TTATCTGACCAAGGCTCCTC+TGG | 0.429565 | 3_1:+73372455 | Msa0374140:CDS |
| GATTTCATTGCTGCTAATCA+AGG | 0.434233 | 3_1:+73370487 | Msa0374140:CDS |
| GAGCAACGTTGTTGACGATA+TGG | 0.445374 | 3_1:+73371374 | Msa0374140:CDS |
| AAGCCCTGCTCTAAAGTACT+TGG | 0.447659 | 3_1:-73372833 | None:intergenic |
| GTGTTTATTGCTTTACCTCA+TGG | 0.450386 | 3_1:+73372910 | Msa0374140:three_prime_UTR |
| TTGTTGAATCTTATCTTTGG+TGG | 0.450721 | 3_1:-73369820 | None:intergenic |
| CCCTGCTTCACTTGTACTCT+AGG | 0.451998 | 3_1:-73372683 | None:intergenic |
| TGATTAGCAGCAATGAAATC+CGG | 0.452153 | 3_1:-73370484 | None:intergenic |
| ATCAAGAACAACTGTTTGAT+TGG | 0.452379 | 3_1:+73371016 | Msa0374140:CDS |
| TAACTGAGGATGGTAGCAAC+AGG | 0.452446 | 3_1:-73372435 | None:intergenic |
| AGGAAGCAAACAAAGTTGAC+AGG | 0.455864 | 3_1:+73370693 | Msa0374140:CDS |
| TTTGTTAGGGTAATGCTTGT+GGG | 0.455984 | 3_1:+73369639 | Msa0374140:intron |
| TTGATTTGCAAAAGCAATTG+AGG | 0.457030 | 3_1:+73370419 | Msa0374140:CDS |
| AGATAATAGGAGCAGCCAAA+AGG | 0.457683 | 3_1:-73371652 | None:intergenic |
| GCTCCCAAGTACTTTAGAGC+AGG | 0.457698 | 3_1:+73372829 | Msa0374140:three_prime_UTR |
| AGGTACAGTAACTTAGTTGT+AGG | 0.460941 | 3_1:+73370746 | Msa0374140:CDS |
| TTAATGACTACAACATGATC+AGG | 0.467562 | 3_1:-73371435 | None:intergenic |
| AGGGTAATGCTTGTGGGCTG+GGG | 0.467936 | 3_1:+73369645 | Msa0374140:intron |
| GAAATCCGGGTCATAGATAC+CGG | 0.470564 | 3_1:-73370470 | None:intergenic |
| TCCTAGAGTACAAGTGAAGC+AGG | 0.475562 | 3_1:+73372682 | Msa0374140:exon |
| GATTCAGTGTACTTAACATT+GGG | 0.477319 | 3_1:-73369394 | None:intergenic |
| GGTGGTTTCGTAATTGTAAA+CGG | 0.478186 | 3_1:-73369428 | None:intergenic |
| AATTGAGATATGGATACAGC+TGG | 0.481530 | 3_1:+73372994 | Msa0374140:three_prime_UTR |
| GTAATGCTTGTGGGCTGGGG+TGG | 0.481711 | 3_1:+73369648 | Msa0374140:CDS |
| ATTATACGTGCAGGTTCCAC+CGG | 0.482882 | 3_1:+73372566 | Msa0374140:intron |
| GATAATAGGAGCAGCCAAAA+GGG | 0.486125 | 3_1:-73371651 | None:intergenic |
| ACGTGCAAATAACGTTATCA+AGG | 0.491091 | 3_1:+73370513 | Msa0374140:CDS |
| TGATGCCATGGCTAGGGCCA+GGG | 0.493673 | 3_1:+73370387 | Msa0374140:CDS |
| ATTCGAGTTGGATCTTATCA+AGG | 0.494706 | 3_1:+73369879 | Msa0374140:CDS |
| AAGAGGAAAGAAAAGAATGA+AGG | 0.500444 | 3_1:-73369334 | None:intergenic |
| GTTACTGTACCTCTCTGTAT+TGG | 0.501501 | 3_1:-73370735 | None:intergenic |
| GGAAATTTCCTTGGAGCGGA+AGG | 0.501533 | 3_1:-73371349 | None:intergenic |
| AAATATTTACCATTGGAAGA+AGG | 0.501662 | 3_1:-73369929 | None:intergenic |
| CAAGCTTCAGCTATTCGAGT+TGG | 0.504429 | 3_1:+73369867 | Msa0374140:CDS |
| CCTTGTAGGAGCTGGTATCA+AGG | 0.505836 | 3_1:+73371093 | Msa0374140:CDS |
| AGCAATAACACCACCGGTAA+GGG | 0.507926 | 3_1:-73369685 | None:intergenic |
| TTAACTCACCAGAGGAGCCT+TGG | 0.508406 | 3_1:-73372463 | None:intergenic |
| CTCTTGCTGTCACCAACATA+AGG | 0.508453 | 3_1:-73371551 | None:intergenic |
| ATTTGTTAGGGTAATGCTTG+TGG | 0.509057 | 3_1:+73369638 | Msa0374140:intron |
| TTTCAAGAGCCTTCTTCCAA+TGG | 0.511249 | 3_1:+73369920 | Msa0374140:CDS |
| CATGAGAGCTTGTGTTGGAT+TGG | 0.511914 | 3_1:+73372641 | Msa0374140:CDS |
| TTGACAGGGTTGTTGTACTC+TGG | 0.512035 | 3_1:+73370708 | Msa0374140:CDS |
| AACAACGGTTCAACCCTTAC+CGG | 0.512660 | 3_1:+73369672 | Msa0374140:CDS |
| CTTGTTCATGAAAATCGTAA+TGG | 0.514368 | 3_1:+73369454 | Msa0374140:CDS |
| AGATTCAGTGTACTTAACAT+TGG | 0.521108 | 3_1:-73369395 | None:intergenic |
| TTTGACAATGCATTCACCAC+TGG | 0.524218 | 3_1:-73372594 | None:intergenic |
| CCTTGATACCAGCTCCTACA+AGG | 0.526501 | 3_1:-73371093 | None:intergenic |
| TTGCAGTATGTGCCTTATGT+TGG | 0.527852 | 3_1:+73371539 | Msa0374140:intron |
| TAGCAATAACACCACCGGTA+AGG | 0.532037 | 3_1:-73369686 | None:intergenic |
| CTCCCAAGTACTTTAGAGCA+GGG | 0.534261 | 3_1:+73372830 | Msa0374140:three_prime_UTR |
| AATCATCTTGGAAACAATGA+TGG | 0.537294 | 3_1:+73371303 | Msa0374140:CDS |
| GGGTCATAGATACCGGGAAG+TGG | 0.539794 | 3_1:-73370463 | None:intergenic |
| GCATTCACCACTGGTGTGCC+CGG | 0.540361 | 3_1:-73372585 | None:intergenic |
| GAGGCCTTATATGGAATCCA+TGG | 0.543328 | 3_1:+73370438 | Msa0374140:CDS |
| CCTTGCTGATGCCATGGCTA+GGG | 0.551502 | 3_1:+73370381 | Msa0374140:CDS |
| GATGGTAGCAACAGGGTGAA+AGG | 0.552503 | 3_1:-73372427 | None:intergenic |
| GAAAACATCAGCAAACCAAA+AGG | 0.554028 | 3_1:-73372781 | None:intergenic |
| AACATCATGAGAGCTTGTGT+TGG | 0.560655 | 3_1:+73372636 | Msa0374140:CDS |
| CCCACAAACCTTCCGCTCCA+AGG | 0.565550 | 3_1:+73371341 | Msa0374140:CDS |
| TGAGGACTTCCATTGATGAA+AGG | 0.570861 | 3_1:-73370872 | None:intergenic |
| ACCTTGCTGATGCCATGGCT+AGG | 0.571457 | 3_1:+73370380 | Msa0374140:CDS |
| CTTGGAGCGGAAGGTTTGTG+GGG | 0.577089 | 3_1:-73371340 | None:intergenic |
| CATGAACCTTGCTGATGCCA+TGG | 0.578935 | 3_1:+73370375 | Msa0374140:CDS |
| AACACAAGCAATGGCAAACA+GGG | 0.579935 | 3_1:-73370837 | None:intergenic |
| TCAGTTTAAATCTGAAGCTG+AGG | 0.583789 | 3_1:+73371712 | Msa0374140:CDS |
| GCAATGGCAAACAGGGTGGA+AGG | 0.586236 | 3_1:-73370830 | None:intergenic |
| GATTAGCAGCAATGAAATCC+GGG | 0.589255 | 3_1:-73370483 | None:intergenic |
| ATTGGAAGAAGGCTCTTGAA+AGG | 0.589300 | 3_1:-73369918 | None:intergenic |
| ATCGTAATGGCACTTATCAG+TGG | 0.589528 | 3_1:+73369467 | Msa0374140:CDS |
| GTGGGCTGGGGTGGAAACAA+CGG | 0.593220 | 3_1:+73369657 | Msa0374140:CDS |
| ACTTCCCGGTATCTATGACC+CGG | 0.600843 | 3_1:+73370465 | Msa0374140:CDS |
| TTCACCAGGTGCATAGAGGA+TGG | 0.602306 | 3_1:-73371409 | None:intergenic |
| TGGTGACAGCAAGAGAGCTA+TGG | 0.602579 | 3_1:+73371559 | Msa0374140:CDS |
| ATTCTCCATAACACAAGCAA+TGG | 0.605875 | 3_1:-73370846 | None:intergenic |
| CCCTAGCCATGGCATCAGCA+AGG | 0.607382 | 3_1:-73370381 | None:intergenic |
| AGCCCTGCTCTAAAGTACTT+GGG | 0.608027 | 3_1:-73372832 | None:intergenic |
| AAGAACAACTGTTTGATTGG+TGG | 0.609331 | 3_1:+73371019 | Msa0374140:CDS |
| AGTTGGATCTTATCAAGGAG+AGG | 0.609608 | 3_1:+73369884 | Msa0374140:CDS |
| ATATTCATGTCCCTAAATTG+GGG | 0.612827 | 3_1:+73369530 | Msa0374140:CDS |
| CCTAGAGTACAAGTGAAGCA+GGG | 0.613737 | 3_1:+73372683 | Msa0374140:exon |
| AATGCCATCCTCTATGCACC+TGG | 0.615007 | 3_1:+73371405 | Msa0374140:CDS |
| GGAAGGTTTGTGGGGCTGAG+AGG | 0.615482 | 3_1:-73371332 | None:intergenic |
| GGTTCCACCGGGCACACCAG+TGG | 0.615777 | 3_1:+73372578 | Msa0374140:intron |
| CGTGCAAATAACGTTATCAA+GGG | 0.615803 | 3_1:+73370514 | Msa0374140:CDS |
| ACATGATCAGGATGTTCACC+AGG | 0.617714 | 3_1:-73371423 | None:intergenic |
| TTATACGTGCAGGTTCCACC+GGG | 0.621923 | 3_1:+73372567 | Msa0374140:intron |
| CTTGGTCAGATAACTGAGGA+TGG | 0.622462 | 3_1:-73372445 | None:intergenic |
| CCTGGAACAAAAGTGTTCTG+AGG | 0.628658 | 3_1:-73370890 | None:intergenic |
| GGAAGCAAACAAAGTTGACA+GGG | 0.628667 | 3_1:+73370694 | Msa0374140:CDS |
| TTGTAACTCACAATTGATGT+TGG | 0.629240 | 3_1:-73371282 | None:intergenic |
| TCTTGGAAATTTCCTTGGAG+CGG | 0.633995 | 3_1:-73371353 | None:intergenic |
| AATAGCTGAAGCTTGAGTCA+AGG | 0.634507 | 3_1:-73369859 | None:intergenic |
| ATTGAGATATGGATACAGCT+GGG | 0.637096 | 3_1:+73372995 | Msa0374140:three_prime_UTR |
| TTCACCACTGGTGTGCCCGG+TGG | 0.637974 | 3_1:-73372582 | None:intergenic |
| GGTGGTGATGATTTCAAGAG+TGG | 0.641949 | 3_1:+73371037 | Msa0374140:CDS |
| CTAGAGTACAAGTGAAGCAG+GGG | 0.649378 | 3_1:+73372684 | Msa0374140:exon |
| TCTGTTAGCAATAACACCAC+CGG | 0.649419 | 3_1:-73369691 | None:intergenic |
| AGCTATGGATGAGTACACTT+CGG | 0.651582 | 3_1:+73371574 | Msa0374140:CDS |
| CATCCTCAGTTATCTGACCA+AGG | 0.657948 | 3_1:+73372446 | Msa0374140:CDS |
| AACGGTTCAACCCTTACCGG+TGG | 0.661685 | 3_1:+73369675 | Msa0374140:CDS |
| AACTGAGGATGGTAGCAACA+GGG | 0.662195 | 3_1:-73372434 | None:intergenic |
| GATACCGGGAAGTGGAACCA+TGG | 0.668036 | 3_1:-73370455 | None:intergenic |
| GATGTTCACCAGGTGCATAG+AGG | 0.676178 | 3_1:-73371413 | None:intergenic |
| AAATCCGGGTCATAGATACC+GGG | 0.679094 | 3_1:-73370469 | None:intergenic |
| ACAAGCAATGGCAAACAGGG+TGG | 0.679241 | 3_1:-73370834 | None:intergenic |
| TGTAGGACTCAATGACACCA+TGG | 0.702021 | 3_1:+73370763 | Msa0374140:CDS |
| TGCCTCTTAAAACTACCATG+AGG | 0.712475 | 3_1:-73372925 | None:intergenic |
| GAGCCTTGGTCAGATAACTG+AGG | 0.725753 | 3_1:-73372449 | None:intergenic |
| TCTGGACTGCCAATACAGAG+AGG | 0.734496 | 3_1:+73370726 | Msa0374140:CDS |
| TGTGTTGCACAACACATGTG+AGG | 0.753320 | 3_1:+73371625 | Msa0374140:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATTAATTGTGATTAAT+CGG | + | chr3_1:73369745-73369764 | Msa0374140:intron | 10.0% |
| !! | AAAAGGAAAATAAAATAAAA+AGG | - | chr3_1:73372767-73372786 | None:intergenic | 10.0% |
| !!! | TTTTTATTTTATTTTCCTTT+TGG | + | chr3_1:73372766-73372785 | Msa0374140:three_prime_UTR | 10.0% |
| !!! | AATTCATATTTAACAGTTTT+AGG | - | chr3_1:73369502-73369521 | None:intergenic | 15.0% |
| !!! | TAATTTTGATTATGATTTTC+AGG | + | chr3_1:73369784-73369803 | Msa0374140:intron | 15.0% |
| !!! | AATTTTGATTATGATTTTCA+GGG | + | chr3_1:73369785-73369804 | Msa0374140:intron | 15.0% |
| !! | ACAAATCAATTAAAACAAAA+GGG | - | chr3_1:73369962-73369981 | None:intergenic | 15.0% |
| !! | AACAAATCAATTAAAACAAA+AGG | - | chr3_1:73369963-73369982 | None:intergenic | 15.0% |
| !!! | AAAATAAAGTAGCTATATTT+TGG | + | chr3_1:73370023-73370042 | Msa0374140:intron | 15.0% |
| !! | ATAACGTACTAAATAAAATA+TGG | - | chr3_1:73370221-73370240 | None:intergenic | 15.0% |
| !! | GAAAGATTATGAATGAAATT+AGG | - | chr3_1:73369563-73369582 | None:intergenic | 20.0% |
| !!! | TTTTATTGGTTTGATTTGTT+AGG | + | chr3_1:73369625-73369644 | Msa0374140:intron | 20.0% |
| !!! | TTTATTGGTTTGATTTGTTA+GGG | + | chr3_1:73369626-73369645 | Msa0374140:intron | 20.0% |
| !!! | ATTTTGATTATGATTTTCAG+GGG | + | chr3_1:73369786-73369805 | Msa0374140:intron | 20.0% |
| !! | GTTTAAGAAATATTTACCAT+TGG | - | chr3_1:73369939-73369958 | None:intergenic | 20.0% |
| !! | CAAATCAATTAAAACAAAAG+GGG | - | chr3_1:73369961-73369980 | None:intergenic | 20.0% |
| !! | ATTAAATTGAATATGACTTG+TGG | + | chr3_1:73370140-73370159 | Msa0374140:intron | 20.0% |
| !!! | TTAAATTGAATATGACTTGT+GGG | + | chr3_1:73370141-73370160 | Msa0374140:intron | 20.0% |
| !!! | ATATTCAGCAAATTTTAAAC+TGG | - | chr3_1:73370640-73370659 | None:intergenic | 20.0% |
| !!! | TTTAATTTTGCAACAAGAAA+AGG | + | chr3_1:73371230-73371249 | Msa0374140:intron | 20.0% |
| !! | ATTTGATACAAAGATTGTAA+TGG | - | chr3_1:73371879-73371898 | None:intergenic | 20.0% |
| !!! | TAAAGCATTAAAGCTTTTTT+TGG | + | chr3_1:73372046-73372065 | Msa0374140:intron | 20.0% |
| !! | TGATTATGAACAATAACAAA+TGG | - | chr3_1:73372088-73372107 | None:intergenic | 20.0% |
| !! | TTAACTTCAGAAATAATACA+AGG | - | chr3_1:73372374-73372393 | None:intergenic | 20.0% |
| !! | TATTATATTATTATACGTGC+AGG | + | chr3_1:73372557-73372576 | Msa0374140:intron | 20.0% |
| ! | AGAAGAAGAAAGAAATGAAA+AGG | - | chr3_1:73369307-73369326 | None:intergenic | 25.0% |
| !! | GTGATTAATCGGAAATTTTA+TGG | + | chr3_1:73369756-73369775 | Msa0374140:intron | 25.0% |
| ! | AAATATTTACCATTGGAAGA+AGG | - | chr3_1:73369932-73369951 | None:intergenic | 25.0% |
| ! | ATTTAATATGTGACATGCAA+TGG | - | chr3_1:73370127-73370146 | None:intergenic | 25.0% |
| ! | TGATGAAATTGACTGAAAAT+TGG | + | chr3_1:73370291-73370310 | Msa0374140:intron | 25.0% |
| !! | ACTTAATGTCTTTGATGATT+TGG | - | chr3_1:73370561-73370580 | None:intergenic | 25.0% |
| !! | ACTTTTCTTTTATTATCACC+AGG | + | chr3_1:73370977-73370996 | Msa0374140:intron | 25.0% |
| !! | CTTTTCTTTTATTATCACCA+GGG | + | chr3_1:73370978-73370997 | Msa0374140:intron | 25.0% |
| !! | TTATATACTGTAACCTTTTC+AGG | + | chr3_1:73371491-73371510 | Msa0374140:intron | 25.0% |
| !! | TTCTTTTGCAACATAAACTA+GGG | - | chr3_1:73371751-73371770 | None:intergenic | 25.0% |
| !! | AATTCATTGATAACAATCTC+TGG | - | chr3_1:73371800-73371819 | None:intergenic | 25.0% |
| ! | GAATTATAGTATTAAGGAGA+CGG | - | chr3_1:73371945-73371964 | None:intergenic | 25.0% |
| ! | CAGATGGAATTATAGTATTA+AGG | - | chr3_1:73371951-73371970 | None:intergenic | 25.0% |
| !!! | TAACTTTTGTTTCATGTCTT+TGG | + | chr3_1:73372201-73372220 | Msa0374140:intron | 25.0% |
| ! | GAAACTTGAGAATAACATAT+TGG | - | chr3_1:73372250-73372269 | None:intergenic | 25.0% |
| !! | AAACTAGAAAGTTCTAACTA+TGG | - | chr3_1:73372716-73372735 | None:intergenic | 25.0% |
| ! | TTTATCTATTTGTGCTCAAT+TGG | + | chr3_1:73372888-73372907 | Msa0374140:three_prime_UTR | 25.0% |
| ! | TTTATCTATTTGTGCTCAAT+TGG | + | chr3_1:73372888-73372907 | Msa0374140:three_prime_UTR | 25.0% |
| AAGAGGAAAGAAAAGAATGA+AGG | - | chr3_1:73369337-73369356 | None:intergenic | 30.0% | |
| ! | CGATAAACATTTTTGTGAAG+AGG | - | chr3_1:73369354-73369373 | None:intergenic | 30.0% |
| GATTCAGTGTACTTAACATT+GGG | - | chr3_1:73369397-73369416 | None:intergenic | 30.0% | |
| AGATTCAGTGTACTTAACAT+TGG | - | chr3_1:73369398-73369417 | None:intergenic | 30.0% | |
| ! | ACGATTTTCATGAACAAGTT+CGG | - | chr3_1:73369452-73369471 | None:intergenic | 30.0% |
| CTTGTTCATGAAAATCGTAA+TGG | + | chr3_1:73369454-73369473 | Msa0374140:CDS | 30.0% | |
| CAATTTAGGGACATGAATAT+CGG | - | chr3_1:73369530-73369549 | None:intergenic | 30.0% | |
| GATATTCATGTCCCTAAATT+GGG | + | chr3_1:73369529-73369548 | Msa0374140:CDS | 30.0% | |
| ATATTCATGTCCCTAAATTG+GGG | + | chr3_1:73369530-73369549 | Msa0374140:CDS | 30.0% | |
| TTGTTGAATCTTATCTTTGG+TGG | - | chr3_1:73369823-73369842 | None:intergenic | 30.0% | |
| ATTCAACAAGCCAATTACTT+TGG | + | chr3_1:73369834-73369853 | Msa0374140:CDS | 30.0% | |
| !!! | AAGTAGCTATATTTTGGTTC+TGG | + | chr3_1:73370029-73370048 | Msa0374140:intron | 30.0% |
| !!! | AGTAGCTATATTTTGGTTCT+GGG | + | chr3_1:73370030-73370049 | Msa0374140:intron | 30.0% |
| ATTTCAACAGGTCTAATTTG+AGG | + | chr3_1:73370164-73370183 | Msa0374140:intron | 30.0% | |
| ATCAGTTTAAGCATGCTATA+AGG | + | chr3_1:73370242-73370261 | Msa0374140:intron | 30.0% | |
| ATTGGTTGAAAACTATATGC+AGG | + | chr3_1:73370309-73370328 | Msa0374140:intron | 30.0% | |
| !! | TTGATTTGCAAAAGCAATTG+AGG | + | chr3_1:73370419-73370438 | Msa0374140:CDS | 30.0% |
| ATGTTAATCTACATGCTTCA+TGG | + | chr3_1:73370588-73370607 | Msa0374140:intron | 30.0% | |
| TTCTATGTTGACATGAATTC+AGG | + | chr3_1:73370663-73370682 | Msa0374140:intron | 30.0% | |
| TCTATGTTGACATGAATTCA+GGG | + | chr3_1:73370664-73370683 | Msa0374140:intron | 30.0% | |
| ACATGAATTCAGGGAATTTA+AGG | + | chr3_1:73370673-73370692 | Msa0374140:intron | 30.0% | |
| ATAAAGAGAAGAAACAAACC+TGG | - | chr3_1:73370911-73370930 | None:intergenic | 30.0% | |
| AATCAAGTGACAGATTTAGA+GGG | - | chr3_1:73370937-73370956 | None:intergenic | 30.0% | |
| TAATCAAGTGACAGATTTAG+AGG | - | chr3_1:73370938-73370957 | None:intergenic | 30.0% | |
| AATCAAACAGTTGTTCTTGA+TGG | - | chr3_1:73371017-73371036 | None:intergenic | 30.0% | |
| ATCAAGAACAACTGTTTGAT+TGG | + | chr3_1:73371016-73371035 | Msa0374140:CDS | 30.0% | |
| ! | GACCAAAATGAAATCTGTTT+TGG | + | chr3_1:73371063-73371082 | Msa0374140:CDS | 30.0% |
| ! | CACCAAAACAGATTTCATTT+TGG | - | chr3_1:73371068-73371087 | None:intergenic | 30.0% |
| !! | CAAAATGAAATCTGTTTTGG+TGG | + | chr3_1:73371066-73371085 | Msa0374140:CDS | 30.0% |
| TTGTAACTCACAATTGATGT+TGG | - | chr3_1:73371285-73371304 | None:intergenic | 30.0% | |
| ATTGTGAGTTACAATCATCT+TGG | + | chr3_1:73371291-73371310 | Msa0374140:CDS | 30.0% | |
| AATCATCTTGGAAACAATGA+TGG | + | chr3_1:73371303-73371322 | Msa0374140:CDS | 30.0% | |
| TTAATGACTACAACATGATC+AGG | - | chr3_1:73371438-73371457 | None:intergenic | 30.0% | |
| TGATCATGTTGTAGTCATTA+AGG | + | chr3_1:73371437-73371456 | Msa0374140:CDS | 30.0% | |
| ! | TACACTTCGGAAATTTTCAT+GGG | + | chr3_1:73371587-73371606 | Msa0374140:CDS | 30.0% |
| ! | GTTCTTTTGCAACATAAACT+AGG | - | chr3_1:73371752-73371771 | None:intergenic | 30.0% |
| ! | ACAAAGATTGTAATGGAGAA+AGG | - | chr3_1:73371872-73371891 | None:intergenic | 30.0% |
| GTTATGAACTTATGTTGTGA+AGG | - | chr3_1:73372123-73372142 | None:intergenic | 30.0% | |
| !! | TTCTGAAGTTAACTATGTTG+TGG | + | chr3_1:73372382-73372401 | Msa0374140:intron | 30.0% |
| !!! | TCAGTTTTAAGAGACAAATC+CGG | + | chr3_1:73372528-73372547 | Msa0374140:intron | 30.0% |
| GGTGTTCAAAAATTGAGATA+TGG | + | chr3_1:73372984-73373003 | Msa0374140:three_prime_UTR | 30.0% | |
| GGTGGTTTCGTAATTGTAAA+CGG | - | chr3_1:73369431-73369450 | None:intergenic | 35.0% | |
| ! | ATTTTCATGAACAAGTTCGG+TGG | - | chr3_1:73369449-73369468 | None:intergenic | 35.0% |
| CGATATTCATGTCCCTAAAT+TGG | + | chr3_1:73369528-73369547 | Msa0374140:CDS | 35.0% | |
| AGGATACTAACCCCAATTTA+GGG | - | chr3_1:73369543-73369562 | None:intergenic | 35.0% | |
| TAGGATACTAACCCCAATTT+AGG | - | chr3_1:73369544-73369563 | None:intergenic | 35.0% | |
| ! | ATTTGTTAGGGTAATGCTTG+TGG | + | chr3_1:73369638-73369657 | Msa0374140:intron | 35.0% |
| TTTGTTAGGGTAATGCTTGT+GGG | + | chr3_1:73369639-73369658 | Msa0374140:intron | 35.0% | |
| !!! | TGATTTTCAGGGGTATTTCA+TGG | + | chr3_1:73369796-73369815 | Msa0374140:intron | 35.0% |
| !!! | GATTTTCAGGGGTATTTCAT+GGG | + | chr3_1:73369797-73369816 | Msa0374140:intron | 35.0% |
| !! | GGCTTGTTGAATCTTATCTT+TGG | - | chr3_1:73369826-73369845 | None:intergenic | 35.0% |
| AGTCAAGGATCCAAAGTAAT+TGG | - | chr3_1:73369847-73369866 | None:intergenic | 35.0% | |
| !! | ATTCGAGTTGGATCTTATCA+AGG | + | chr3_1:73369879-73369898 | Msa0374140:CDS | 35.0% |
| ATCCTTAACTCAAACCATCT+TGG | - | chr3_1:73370271-73370290 | None:intergenic | 35.0% | |
| ! | AACCCTGATGACATTGTTTT+TGG | + | chr3_1:73370334-73370353 | Msa0374140:CDS | 35.0% |
| CACCAAAAACAATGTCATCA+GGG | - | chr3_1:73370339-73370358 | None:intergenic | 35.0% | |
| !!! | ATGACATTGTTTTTGGTGGA+TGG | + | chr3_1:73370341-73370360 | Msa0374140:CDS | 35.0% |
| !!! | TGACATTGTTTTTGGTGGAT+GGG | + | chr3_1:73370342-73370361 | Msa0374140:CDS | 35.0% |
| CAAATCAATGTCAAAAACCC+TGG | - | chr3_1:73370407-73370426 | None:intergenic | 35.0% | |
| ! | AAAGCAATTGAGGCCTTATA+TGG | + | chr3_1:73370429-73370448 | Msa0374140:CDS | 35.0% |
| TGATTAGCAGCAATGAAATC+CGG | - | chr3_1:73370487-73370506 | None:intergenic | 35.0% | |
| GATTTCATTGCTGCTAATCA+AGG | + | chr3_1:73370487-73370506 | Msa0374140:CDS | 35.0% | |
| ACGTGCAAATAACGTTATCA+AGG | + | chr3_1:73370513-73370532 | Msa0374140:CDS | 35.0% | |
| CGTGCAAATAACGTTATCAA+GGG | + | chr3_1:73370514-73370533 | Msa0374140:CDS | 35.0% | |
| AGGTACAGTAACTTAGTTGT+AGG | + | chr3_1:73370746-73370765 | Msa0374140:CDS | 35.0% | |
| ATTCTCCATAACACAAGCAA+TGG | - | chr3_1:73370849-73370868 | None:intergenic | 35.0% | |
| GAGAATGTTCCTTTCATCAA+TGG | + | chr3_1:73370863-73370882 | Msa0374140:CDS | 35.0% | |
| AAGAACAACTGTTTGATTGG+TGG | + | chr3_1:73371019-73371038 | Msa0374140:CDS | 35.0% | |
| GAAGAGTAAAAGACCTGAAA+AGG | - | chr3_1:73371507-73371526 | None:intergenic | 35.0% | |
| ! | AGGTCTTTTACTCTTCACTT+TGG | + | chr3_1:73371511-73371530 | Msa0374140:intron | 35.0% |
| ! | GTACACTTCGGAAATTTTCA+TGG | + | chr3_1:73371586-73371605 | Msa0374140:CDS | 35.0% |
| AGAACCAAGTCCAAGATAAT+AGG | - | chr3_1:73371668-73371687 | None:intergenic | 35.0% | |
| ! | TCAGTTTAAATCTGAAGCTG+AGG | + | chr3_1:73371712-73371731 | Msa0374140:CDS | 35.0% |
| TTGCATGTCATTGTGTAACT+TGG | - | chr3_1:73372018-73372037 | None:intergenic | 35.0% | |
| !! | ATAATCATGCAGCTTTAGGA+AGG | - | chr3_1:73372145-73372164 | None:intergenic | 35.0% |
| CAACATAATCATGCAGCTTT+AGG | - | chr3_1:73372149-73372168 | None:intergenic | 35.0% | |
| ! | GTTGCTCTGAGTTAATGTTT+AGG | + | chr3_1:73372165-73372184 | Msa0374140:intron | 35.0% |
| AAGTAGAATTAACTCACCAG+AGG | - | chr3_1:73372474-73372493 | None:intergenic | 35.0% | |
| GAAAACATCAGCAAACCAAA+AGG | - | chr3_1:73372784-73372803 | None:intergenic | 35.0% | |
| GTGTTTATTGCTTTACCTCA+TGG | + | chr3_1:73372910-73372929 | Msa0374140:three_prime_UTR | 35.0% | |
| !!! | TACCTCATGGTAGTTTTAAG+AGG | + | chr3_1:73372923-73372942 | Msa0374140:three_prime_UTR | 35.0% |
| AATTGAGATATGGATACAGC+TGG | + | chr3_1:73372994-73373013 | Msa0374140:three_prime_UTR | 35.0% | |
| ATTGAGATATGGATACAGCT+GGG | + | chr3_1:73372995-73373014 | Msa0374140:three_prime_UTR | 35.0% | |
| ATCGTAATGGCACTTATCAG+TGG | + | chr3_1:73369467-73369486 | Msa0374140:CDS | 40.0% | |
| TCTGTTAGCAATAACACCAC+CGG | - | chr3_1:73369694-73369713 | None:intergenic | 40.0% | |
| AATAGCTGAAGCTTGAGTCA+AGG | - | chr3_1:73369862-73369881 | None:intergenic | 40.0% | |
| AGTTGGATCTTATCAAGGAG+AGG | + | chr3_1:73369884-73369903 | Msa0374140:CDS | 40.0% | |
| ATTGGAAGAAGGCTCTTGAA+AGG | - | chr3_1:73369921-73369940 | None:intergenic | 40.0% | |
| TTTCAAGAGCCTTCTTCCAA+TGG | + | chr3_1:73369920-73369939 | Msa0374140:CDS | 40.0% | |
| ! | ATGACTTGTGGGATTTCAAC+AGG | + | chr3_1:73370152-73370171 | Msa0374140:intron | 40.0% |
| ATGCTATAAGGAGTCCAAGA+TGG | + | chr3_1:73370254-73370273 | Msa0374140:intron | 40.0% | |
| ! | GTCCAAGATGGTTTGAGTTA+AGG | + | chr3_1:73370266-73370285 | Msa0374140:intron | 40.0% |
| CCACCAAAAACAATGTCATC+AGG | - | chr3_1:73370340-73370359 | None:intergenic | 40.0% | |
| !!! | CCTGATGACATTGTTTTTGG+TGG | + | chr3_1:73370337-73370356 | Msa0374140:CDS | 40.0% |
| GGAACCATGGATTCCATATA+AGG | - | chr3_1:73370445-73370464 | None:intergenic | 40.0% | |
| GATTAGCAGCAATGAAATCC+GGG | - | chr3_1:73370486-73370505 | None:intergenic | 40.0% | |
| AGGAAGCAAACAAAGTTGAC+AGG | + | chr3_1:73370693-73370712 | Msa0374140:CDS | 40.0% | |
| GGAAGCAAACAAAGTTGACA+GGG | + | chr3_1:73370694-73370713 | Msa0374140:CDS | 40.0% | |
| GTTACTGTACCTCTCTGTAT+TGG | - | chr3_1:73370738-73370757 | None:intergenic | 40.0% | |
| AACACAAGCAATGGCAAACA+GGG | - | chr3_1:73370840-73370859 | None:intergenic | 40.0% | |
| TAACACAAGCAATGGCAAAC+AGG | - | chr3_1:73370841-73370860 | None:intergenic | 40.0% | |
| GTTTGCCATTGCTTGTGTTA+TGG | + | chr3_1:73370841-73370860 | Msa0374140:CDS | 40.0% | |
| TGAGGACTTCCATTGATGAA+AGG | - | chr3_1:73370875-73370894 | None:intergenic | 40.0% | |
| !!! | GTTTTGGTGGATTTCCTTGT+AGG | + | chr3_1:73371079-73371098 | Msa0374140:CDS | 40.0% |
| TCTTGGAAATTTCCTTGGAG+CGG | - | chr3_1:73371356-73371375 | None:intergenic | 40.0% | |
| GTTGCTCTTGGAAATTTCCT+TGG | - | chr3_1:73371361-73371380 | None:intergenic | 40.0% | |
| ACATAAGGCACATACTGCAA+GGG | - | chr3_1:73371539-73371558 | None:intergenic | 40.0% | |
| AACATAAGGCACATACTGCA+AGG | - | chr3_1:73371540-73371559 | None:intergenic | 40.0% | |
| TTGCAGTATGTGCCTTATGT+TGG | + | chr3_1:73371539-73371558 | Msa0374140:intron | 40.0% | |
| AGCTATGGATGAGTACACTT+CGG | + | chr3_1:73371574-73371593 | Msa0374140:CDS | 40.0% | |
| ! | ACTTCGGAAATTTTCATGGG+TGG | + | chr3_1:73371590-73371609 | Msa0374140:CDS | 40.0% |
| ! | CTTCGGAAATTTTCATGGGT+GGG | + | chr3_1:73371591-73371610 | Msa0374140:CDS | 40.0% |
| GATAATAGGAGCAGCCAAAA+GGG | - | chr3_1:73371654-73371673 | None:intergenic | 40.0% | |
| AGATAATAGGAGCAGCCAAA+AGG | - | chr3_1:73371655-73371674 | None:intergenic | 40.0% | |
| TTTGGCTGCTCCTATTATCT+TGG | + | chr3_1:73371655-73371674 | Msa0374140:CDS | 40.0% | |
| TGCTCCTATTATCTTGGACT+TGG | + | chr3_1:73371661-73371680 | Msa0374140:CDS | 40.0% | |
| GATCAAAGAACTCTCGTTTC+AGG | - | chr3_1:73371850-73371869 | None:intergenic | 40.0% | |
| ! | AAACTGTGCAACTTGCTCAA+TGG | + | chr3_1:73371905-73371924 | Msa0374140:intron | 40.0% |
| ! | TGCAACTTGCTCAATGGTTA+TGG | + | chr3_1:73371911-73371930 | Msa0374140:intron | 40.0% |
| CATGTCATTGTGTAACTTGG+TGG | - | chr3_1:73372015-73372034 | None:intergenic | 40.0% | |
| TTTGACAATGCATTCACCAC+TGG | - | chr3_1:73372597-73372616 | None:intergenic | 40.0% | |
| AACATCATGAGAGCTTGTGT+TGG | + | chr3_1:73372636-73372655 | Msa0374140:CDS | 40.0% | |
| ! | TCTAGGATCATGTTGTTCTC+TGG | - | chr3_1:73372669-73372688 | None:intergenic | 40.0% |
| TGCCTCTTAAAACTACCATG+AGG | - | chr3_1:73372928-73372947 | None:intergenic | 40.0% | |
| AACAACGGTTCAACCCTTAC+CGG | + | chr3_1:73369672-73369691 | Msa0374140:CDS | 45.0% | |
| AGCAATAACACCACCGGTAA+GGG | - | chr3_1:73369688-73369707 | None:intergenic | 45.0% | |
| TAGCAATAACACCACCGGTA+AGG | - | chr3_1:73369689-73369708 | None:intergenic | 45.0% | |
| CAAGCTTCAGCTATTCGAGT+TGG | + | chr3_1:73369867-73369886 | Msa0374140:CDS | 45.0% | |
| ! | GAGGCCTTATATGGAATCCA+TGG | + | chr3_1:73370438-73370457 | Msa0374140:CDS | 45.0% |
| AAATCCGGGTCATAGATACC+GGG | - | chr3_1:73370472-73370491 | None:intergenic | 45.0% | |
| GAAATCCGGGTCATAGATAC+CGG | - | chr3_1:73370473-73370492 | None:intergenic | 45.0% | |
| TTGACAGGGTTGTTGTACTC+TGG | + | chr3_1:73370708-73370727 | Msa0374140:CDS | 45.0% | |
| TGTAGGACTCAATGACACCA+TGG | + | chr3_1:73370763-73370782 | Msa0374140:CDS | 45.0% | |
| AGCAGCAAAAAGGTTCTCCA+TGG | - | chr3_1:73370783-73370802 | None:intergenic | 45.0% | |
| TTCTGTCCACAGCAGCAAAA+AGG | - | chr3_1:73370793-73370812 | None:intergenic | 45.0% | |
| !! | CCTGGAACAAAAGTGTTCTG+AGG | - | chr3_1:73370893-73370912 | None:intergenic | 45.0% |
| ! | CCTCAGAACACTTTTGTTCC+AGG | + | chr3_1:73370890-73370909 | Msa0374140:CDS | 45.0% |
| ATGGCAAGATCAATAAGCCC+TGG | - | chr3_1:73370998-73371017 | None:intergenic | 45.0% | |
| ! | GGTGGTGATGATTTCAAGAG+TGG | + | chr3_1:73371037-73371056 | Msa0374140:CDS | 45.0% |
| ATCGTCAACAACGTTGCTCT+TGG | - | chr3_1:73371373-73371392 | None:intergenic | 45.0% | |
| GAGCAACGTTGTTGACGATA+TGG | + | chr3_1:73371374-73371393 | Msa0374140:CDS | 45.0% | |
| ACATGATCAGGATGTTCACC+AGG | - | chr3_1:73371426-73371445 | None:intergenic | 45.0% | |
| ! | CTCTTGCTGTCACCAACATA+AGG | - | chr3_1:73371554-73371573 | None:intergenic | 45.0% |
| TGTGTTGCACAACACATGTG+AGG | + | chr3_1:73371625-73371644 | Msa0374140:CDS | 45.0% | |
| GCTCAATGGTTATGGACCAA+AGG | + | chr3_1:73371919-73371938 | Msa0374140:intron | 45.0% | |
| AGTATTAAGGAGACGGCCTT+TGG | - | chr3_1:73371938-73371957 | None:intergenic | 45.0% | |
| CCATACTCTTCAGAAGCAGA+TGG | - | chr3_1:73371967-73371986 | None:intergenic | 45.0% | |
| ! | CCATCTGCTTCTGAAGAGTA+TGG | + | chr3_1:73371964-73371983 | Msa0374140:intron | 45.0% |
| AACTGAGGATGGTAGCAACA+GGG | - | chr3_1:73372437-73372456 | None:intergenic | 45.0% | |
| TAACTGAGGATGGTAGCAAC+AGG | - | chr3_1:73372438-73372457 | None:intergenic | 45.0% | |
| CTTGGTCAGATAACTGAGGA+TGG | - | chr3_1:73372448-73372467 | None:intergenic | 45.0% | |
| CATCCTCAGTTATCTGACCA+AGG | + | chr3_1:73372446-73372465 | Msa0374140:CDS | 45.0% | |
| ATTATACGTGCAGGTTCCAC+CGG | + | chr3_1:73372566-73372585 | Msa0374140:intron | 45.0% | |
| CATGAGAGCTTGTGTTGGAT+TGG | + | chr3_1:73372641-73372660 | Msa0374140:CDS | 45.0% | |
| TCCTAGAGTACAAGTGAAGC+AGG | + | chr3_1:73372682-73372701 | Msa0374140:exon | 45.0% | |
| CCTAGAGTACAAGTGAAGCA+GGG | + | chr3_1:73372683-73372702 | Msa0374140:exon | 45.0% | |
| CTAGAGTACAAGTGAAGCAG+GGG | + | chr3_1:73372684-73372703 | Msa0374140:exon | 45.0% | |
| !! | CTCCCAAGTACTTTAGAGCA+GGG | + | chr3_1:73372830-73372849 | Msa0374140:three_prime_UTR | 45.0% |
| !! | AGCCCTGCTCTAAAGTACTT+GGG | - | chr3_1:73372835-73372854 | None:intergenic | 45.0% |
| !! | AAGCCCTGCTCTAAAGTACT+TGG | - | chr3_1:73372836-73372855 | None:intergenic | 45.0% |
| !!! | AGCAGGGCTTAGCTTGTTTT+TGG | + | chr3_1:73372846-73372865 | Msa0374140:three_prime_UTR | 45.0% |
| !!! | GCAGGGCTTAGCTTGTTTTT+GGG | + | chr3_1:73372847-73372866 | Msa0374140:three_prime_UTR | 45.0% |
| !!! | TGATTTATTTATTATTTTAT+TGG | + | chr3_1:73369611-73369630 | Msa0374140:intron | 5.0% |
| !! | TAATAATATAATATAATAAC+CGG | - | chr3_1:73372550-73372569 | None:intergenic | 5.0% |
| !! | AAATAGATAAATATTTATAT+TGG | - | chr3_1:73372879-73372898 | None:intergenic | 5.0% |
| TTAGGGTAATGCTTGTGGGC+TGG | + | chr3_1:73369643-73369662 | Msa0374140:intron | 50.0% | |
| TAGGGTAATGCTTGTGGGCT+GGG | + | chr3_1:73369644-73369663 | Msa0374140:intron | 50.0% | |
| CATGAACCTTGCTGATGCCA+TGG | + | chr3_1:73370375-73370394 | Msa0374140:CDS | 50.0% | |
| GAATCCATGGTTCCACTTCC+CGG | + | chr3_1:73370451-73370470 | Msa0374140:CDS | 50.0% | |
| ACTTCCCGGTATCTATGACC+CGG | + | chr3_1:73370465-73370484 | Msa0374140:CDS | 50.0% | |
| TCTGGACTGCCAATACAGAG+AGG | + | chr3_1:73370726-73370745 | Msa0374140:CDS | 50.0% | |
| ! | GGAGAACCTTTTTGCTGCTG+TGG | + | chr3_1:73370784-73370803 | Msa0374140:CDS | 50.0% |
| ACAAGCAATGGCAAACAGGG+TGG | - | chr3_1:73370837-73370856 | None:intergenic | 50.0% | |
| GTGGATTTCCTTGTAGGAGC+TGG | + | chr3_1:73371085-73371104 | Msa0374140:CDS | 50.0% | |
| CCTTGATACCAGCTCCTACA+AGG | - | chr3_1:73371096-73371115 | None:intergenic | 50.0% | |
| CCTTGTAGGAGCTGGTATCA+AGG | + | chr3_1:73371093-73371112 | Msa0374140:CDS | 50.0% | |
| GGAAATTTCCTTGGAGCGGA+AGG | - | chr3_1:73371352-73371371 | None:intergenic | 50.0% | |
| AATGCCATCCTCTATGCACC+TGG | + | chr3_1:73371405-73371424 | Msa0374140:CDS | 50.0% | |
| TTCACCAGGTGCATAGAGGA+TGG | - | chr3_1:73371412-73371431 | None:intergenic | 50.0% | |
| GATGTTCACCAGGTGCATAG+AGG | - | chr3_1:73371416-73371435 | None:intergenic | 50.0% | |
| TGGTGACAGCAAGAGAGCTA+TGG | + | chr3_1:73371559-73371578 | Msa0374140:CDS | 50.0% | |
| ! | CACATGTGAGGACTCCCTTT+TGG | + | chr3_1:73371637-73371656 | Msa0374140:CDS | 50.0% |
| ! | CTCTCGTTTCAGGTGTCAGA+AGG | - | chr3_1:73371840-73371859 | None:intergenic | 50.0% |
| GATGGTAGCAACAGGGTGAA+AGG | - | chr3_1:73372430-73372449 | None:intergenic | 50.0% | |
| GAGCCTTGGTCAGATAACTG+AGG | - | chr3_1:73372452-73372471 | None:intergenic | 50.0% | |
| TTATCTGACCAAGGCTCCTC+TGG | + | chr3_1:73372455-73372474 | Msa0374140:CDS | 50.0% | |
| TTAACTCACCAGAGGAGCCT+TGG | - | chr3_1:73372466-73372485 | None:intergenic | 50.0% | |
| TTATACGTGCAGGTTCCACC+GGG | + | chr3_1:73372567-73372586 | Msa0374140:intron | 50.0% | |
| CCCTGCTTCACTTGTACTCT+AGG | - | chr3_1:73372686-73372705 | None:intergenic | 50.0% | |
| !! | GCTCCCAAGTACTTTAGAGC+AGG | + | chr3_1:73372829-73372848 | Msa0374140:three_prime_UTR | 50.0% |
| ! | AGGGTAATGCTTGTGGGCTG+GGG | + | chr3_1:73369645-73369664 | Msa0374140:intron | 55.0% |
| AACGGTTCAACCCTTACCGG+TGG | + | chr3_1:73369675-73369694 | Msa0374140:CDS | 55.0% | |
| ACCTTGCTGATGCCATGGCT+AGG | + | chr3_1:73370380-73370399 | Msa0374140:CDS | 55.0% | |
| CCTTGCTGATGCCATGGCTA+GGG | + | chr3_1:73370381-73370400 | Msa0374140:CDS | 55.0% | |
| AAAAACCCTGGCCCTAGCCA+TGG | - | chr3_1:73370395-73370414 | None:intergenic | 55.0% | |
| GATACCGGGAAGTGGAACCA+TGG | - | chr3_1:73370458-73370477 | None:intergenic | 55.0% | |
| GGGTCATAGATACCGGGAAG+TGG | - | chr3_1:73370466-73370485 | None:intergenic | 55.0% | |
| GCAATGGCAAACAGGGTGGA+AGG | - | chr3_1:73370833-73370852 | None:intergenic | 55.0% | |
| CTTGGAGCGGAAGGTTTGTG+GGG | - | chr3_1:73371343-73371362 | None:intergenic | 55.0% | |
| CCTTGGAGCGGAAGGTTTGT+GGG | - | chr3_1:73371344-73371363 | None:intergenic | 55.0% | |
| TCCTTGGAGCGGAAGGTTTG+TGG | - | chr3_1:73371345-73371364 | None:intergenic | 55.0% | |
| GTCAAAGCAGCGAGCAATGC+TGG | + | chr3_1:73372611-73372630 | Msa0374140:CDS | 55.0% | |
| !! | GTAATGCTTGTGGGCTGGGG+TGG | + | chr3_1:73369648-73369667 | Msa0374140:CDS | 60.0% |
| !! | GTGGGCTGGGGTGGAAACAA+CGG | + | chr3_1:73369657-73369676 | Msa0374140:CDS | 60.0% |
| CCCTAGCCATGGCATCAGCA+AGG | - | chr3_1:73370384-73370403 | None:intergenic | 60.0% | |
| TGATGCCATGGCTAGGGCCA+GGG | + | chr3_1:73370387-73370406 | Msa0374140:CDS | 60.0% | |
| GGAAGGTTTGTGGGGCTGAG+AGG | - | chr3_1:73371335-73371354 | None:intergenic | 60.0% | |
| CCCACAAACCTTCCGCTCCA+AGG | + | chr3_1:73371341-73371360 | Msa0374140:CDS | 60.0% | |
| GCATTCACCACTGGTGTGCC+CGG | - | chr3_1:73372588-73372607 | None:intergenic | 60.0% | |
| CTGATGCCATGGCTAGGGCC+AGG | + | chr3_1:73370386-73370405 | Msa0374140:CDS | 65.0% | |
| TTCACCACTGGTGTGCCCGG+TGG | - | chr3_1:73372585-73372604 | None:intergenic | 65.0% | |
| GGTTCCACCGGGCACACCAG+TGG | + | chr3_1:73372578-73372597 | Msa0374140:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 73369256 | 73373029 | 73369256 | ID=Msa0374140;Name=Msa0374140 |
| chr3_1 | mRNA | 73369256 | 73373029 | 73369256 | ID=Msa0374140-mRNA-1;Parent=Msa0374140;Name=Msa0374140-mRNA-1;_AED=0.09;_eAED=0.09;_QI=108|1|1|1|1|1|10|331|510 |
| chr3_1 | exon | 73369256 | 73369551 | 73369256 | ID=Msa0374140-mRNA-1:exon:16657;Parent=Msa0374140-mRNA-1 |
| chr3_1 | exon | 73369647 | 73369715 | 73369647 | ID=Msa0374140-mRNA-1:exon:16658;Parent=Msa0374140-mRNA-1 |
| chr3_1 | exon | 73369806 | 73369941 | 73369806 | ID=Msa0374140-mRNA-1:exon:16659;Parent=Msa0374140-mRNA-1 |
| chr3_1 | exon | 73370331 | 73370578 | 73370331 | ID=Msa0374140-mRNA-1:exon:16660;Parent=Msa0374140-mRNA-1 |
| chr3_1 | exon | 73370685 | 73370911 | 73370685 | ID=Msa0374140-mRNA-1:exon:16661;Parent=Msa0374140-mRNA-1 |
| chr3_1 | exon | 73370999 | 73371114 | 73370999 | ID=Msa0374140-mRNA-1:exon:16662;Parent=Msa0374140-mRNA-1 |
| chr3_1 | exon | 73371282 | 73371458 | 73371282 | ID=Msa0374140-mRNA-1:exon:16663;Parent=Msa0374140-mRNA-1 |
| chr3_1 | exon | 73371545 | 73371733 | 73371545 | ID=Msa0374140-mRNA-1:exon:16664;Parent=Msa0374140-mRNA-1 |
| chr3_1 | exon | 73372414 | 73372476 | 73372414 | ID=Msa0374140-mRNA-1:exon:16665;Parent=Msa0374140-mRNA-1 |
| chr3_1 | exon | 73372579 | 73373029 | 73372579 | ID=Msa0374140-mRNA-1:exon:16666;Parent=Msa0374140-mRNA-1 |
| chr3_1 | five_prime_UTR | 73369256 | 73369363 | 73369256 | ID=Msa0374140-mRNA-1:five_prime_utr;Parent=Msa0374140-mRNA-1 |
| chr3_1 | CDS | 73369364 | 73369551 | 73369364 | ID=Msa0374140-mRNA-1:cds;Parent=Msa0374140-mRNA-1 |
| chr3_1 | CDS | 73369647 | 73369715 | 73369647 | ID=Msa0374140-mRNA-1:cds;Parent=Msa0374140-mRNA-1 |
| chr3_1 | CDS | 73369806 | 73369941 | 73369806 | ID=Msa0374140-mRNA-1:cds;Parent=Msa0374140-mRNA-1 |
| chr3_1 | CDS | 73370331 | 73370578 | 73370331 | ID=Msa0374140-mRNA-1:cds;Parent=Msa0374140-mRNA-1 |
| chr3_1 | CDS | 73370685 | 73370911 | 73370685 | ID=Msa0374140-mRNA-1:cds;Parent=Msa0374140-mRNA-1 |
| chr3_1 | CDS | 73370999 | 73371114 | 73370999 | ID=Msa0374140-mRNA-1:cds;Parent=Msa0374140-mRNA-1 |
| chr3_1 | CDS | 73371282 | 73371458 | 73371282 | ID=Msa0374140-mRNA-1:cds;Parent=Msa0374140-mRNA-1 |
| chr3_1 | CDS | 73371545 | 73371733 | 73371545 | ID=Msa0374140-mRNA-1:cds;Parent=Msa0374140-mRNA-1 |
| chr3_1 | CDS | 73372414 | 73372476 | 73372414 | ID=Msa0374140-mRNA-1:cds;Parent=Msa0374140-mRNA-1 |
| chr3_1 | CDS | 73372579 | 73372698 | 73372579 | ID=Msa0374140-mRNA-1:cds;Parent=Msa0374140-mRNA-1 |
| chr3_1 | three_prime_UTR | 73372699 | 73373029 | 73372699 | ID=Msa0374140-mRNA-1:three_prime_utr;Parent=Msa0374140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
