AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0374610

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0374610 MtrunA17_Chr3g0124941 90.704 355 21 1 1 343 11 365 0.0 625
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0374610 AT1G21710.1 60.976 328 109 4 16 330 18 339 8.34e-140 403

Find 176 sgRNAs with CRISPR-Local

Find 265 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGTCAAGTGTTTATTTAAA+TGG 0.140391 3_1:+74060775 None:intergenic
AAGGCAAAGCCTCTTTAATT+AGG 0.181173 3_1:+74060728 None:intergenic
TCGTCTCTTGGGACTTATTT+AGG 0.186122 3_1:-74063029 Msa0374610:CDS
CGGGTTTGGGTTTGGGGTGT+TGG 0.199325 3_1:+74063491 None:intergenic
GGAGTGGCGGGTTTGGGTTT+GGG 0.225556 3_1:+74063484 None:intergenic
TTTGAGATTAATAGGGATTC+TGG 0.226250 3_1:-74061080 Msa0374610:three_prime_UTR
TGGAGTGGCGGGTTTGGGTT+TGG 0.232265 3_1:+74063483 None:intergenic
GGGTTTGGGTTTGGGGTGTT+GGG 0.248606 3_1:+74063492 None:intergenic
GAGTGGCGGGTTTGGGTTTG+GGG 0.249611 3_1:+74063485 None:intergenic
GTTGGTGGAGTGGCGGGTTT+GGG 0.259029 3_1:+74063478 None:intergenic
GGTTGGTGGAGTGGCGGGTT+TGG 0.265429 3_1:+74063477 None:intergenic
CGATGAAAGATTTGCGGAAC+TGG 0.268100 3_1:-74063168 Msa0374610:CDS
CAACTAAGAGACGCTGGTTT+TGG 0.300884 3_1:-74062939 Msa0374610:CDS
GGTTTGGGTTTGGGGTGTTG+GGG 0.318307 3_1:+74063493 None:intergenic
GCTATACAAGCAGCCACTTT+AGG 0.318798 3_1:+74062690 None:intergenic
AGGCAAAGCCTCTTTAATTA+GGG 0.319272 3_1:+74060729 None:intergenic
TCTGCATCTTTCCTCTTCAT+TGG 0.332210 3_1:-74060850 Msa0374610:three_prime_UTR
GTTGATTACGTTTCGTCTCT+TGG 0.337618 3_1:-74063041 Msa0374610:CDS
CTGCATCTTTCCTCTTCATT+GGG 0.343108 3_1:-74060849 Msa0374610:three_prime_UTR
TATTAGTAGAATCACGAAAA+TGG 0.343310 3_1:-74063063 Msa0374610:CDS
GCTCGGGTAAGATATACTTT+TGG 0.347590 3_1:+74061884 None:intergenic
TCTTGTCATATGGCAAGAAA+TGG 0.356013 3_1:+74060810 None:intergenic
CTCTGTGTCAATTGAAGGTT+AGG 0.356639 3_1:+74061350 None:intergenic
AGCCATTCTTCCCCACCTTC+AGG 0.363722 3_1:+74062780 None:intergenic
ATCTACGGGTTGTGAGTCTA+AGG 0.373502 3_1:-74061552 Msa0374610:CDS
GGTGTTGAAGGTGGAAGAGG+AGG 0.385734 3_1:+74063515 None:intergenic
TATATCTTACCCGAGCTTGC+AGG 0.389581 3_1:-74061877 Msa0374610:CDS
TCCACCTCTGTGTCAATTGA+AGG 0.400807 3_1:+74061345 None:intergenic
CGCCAAACATGAACATCAAC+AGG 0.405155 3_1:+74062636 None:intergenic
AATCATCGTTGGAGGAAGAT+TGG 0.405715 3_1:+74063264 None:intergenic
TTGAGATTAATAGGGATTCT+GGG 0.408606 3_1:-74061079 Msa0374610:three_prime_UTR
TTGATTACGTTTCGTCTCTT+GGG 0.411601 3_1:-74063040 Msa0374610:CDS
TTCCTGTTGATGTTCATGTT+TGG 0.414571 3_1:-74062638 Msa0374610:CDS
GATAGGGCTAAATATATAAC+TGG 0.417698 3_1:-74062828 Msa0374610:intron
GTTTGGGTTTGGGGTGTTGG+GGG 0.421911 3_1:+74063494 None:intergenic
GTTGAAGGTGGAAGAGGAGG+AGG 0.423691 3_1:+74063518 None:intergenic
TGAGAGGTTGGTGGAGTGGC+GGG 0.427172 3_1:+74063472 None:intergenic
TCTCAATTCACCGGCGTCGT+TGG 0.434809 3_1:-74063347 Msa0374610:CDS
TGCCGAGTTGCCTTCACAAA+AGG 0.436422 3_1:-74061758 Msa0374610:CDS
AGGACCAACTCCAGGTAACT+TGG 0.437622 3_1:+74062710 None:intergenic
AGCCTGAAGGTGGGGAAGAA+TGG 0.438759 3_1:-74062782 Msa0374610:CDS
GAAAACACAGAATCATAGTA+AGG 0.439074 3_1:+74061115 None:intergenic
TGACACGTGGAAGGTGTTCT+CGG 0.441693 3_1:-74063195 Msa0374610:CDS
AATCAAATGCAAGGAATTTG+TGG 0.442011 3_1:+74060903 None:intergenic
GAAGTAAACGATGAAATTGT+TGG 0.445595 3_1:+74060970 None:intergenic
CGCAACATTTGAGTGGTGCT+AGG 0.448095 3_1:-74063145 Msa0374610:CDS
CAACTTGGAACCTGCAAGCT+CGG 0.455192 3_1:+74061867 None:intergenic
CCTCCTACCTTTACACTTGA+GGG 0.458910 3_1:-74061734 Msa0374610:CDS
ATCATCGTTGGAGGAAGATT+GGG 0.467004 3_1:+74063265 None:intergenic
TTGCTTGATTTCTTAAACGC+CGG 0.472258 3_1:-74063230 Msa0374610:CDS
AGGAGGAGGTAGTGATTTGG+TGG 0.473290 3_1:+74063532 None:intergenic
AGAGGTGGACAATGAACTAT+TGG 0.473746 3_1:+74060933 None:intergenic
ACATGGAAGATGAACTTTGT+TGG 0.476317 3_1:-74061245 Msa0374610:three_prime_UTR
AAGAGGAGGAGGTAGTGATT+TGG 0.478738 3_1:+74063529 None:intergenic
AGGTAAGGATAGTTCTTGTC+GGG 0.479365 3_1:+74063418 None:intergenic
TCGATTAGAGTGAGATCTAC+GGG 0.481392 3_1:-74061566 Msa0374610:intron
CTTGTCATATGGCAAGAAAT+GGG 0.482285 3_1:+74060811 None:intergenic
CAGCGGAAGGTTTGACCGGT+GGG 0.483622 3_1:+74063386 None:intergenic
ACTTATTTAGGTGAAGTTGA+AGG 0.484673 3_1:-74063017 Msa0374610:CDS
GAAGGTTTGACCGGTGGGGA+AGG 0.484925 3_1:+74063391 None:intergenic
ACCTCTCAATATCCCGGGTA+TGG 0.484937 3_1:-74063457 Msa0374610:CDS
GTGAAGTTTCTGTGTCAACT+TGG 0.485616 3_1:+74061852 None:intergenic
CTTTGCGGGATTCTTCTGCT+TGG 0.488513 3_1:+74061708 None:intergenic
ACAGACCAGGGGAGAATTCA+CGG 0.493443 3_1:-74061036 Msa0374610:three_prime_UTR
GCTTTATTCTCTTCGCACAT+TGG 0.497338 3_1:-74062760 Msa0374610:CDS
TGAACTCTTAGTAGAAATCA+TGG 0.498516 3_1:-74061319 Msa0374610:three_prime_UTR
AACAATGGACATGGACATGC+AGG 0.499886 3_1:+74061000 None:intergenic
GCGATACACGCTGGAGACTC+AGG 0.502315 3_1:-74061530 Msa0374610:CDS
CTGTTGATGTTCATGTTTGG+CGG 0.502808 3_1:-74062635 Msa0374610:CDS
TTGAGAGGTTGGTGGAGTGG+CGG 0.503046 3_1:+74063471 None:intergenic
TGACTTAGTCGTTGCGAACA+TGG 0.512375 3_1:-74061262 Msa0374610:three_prime_UTR
GTTCAGAAACTAATGAAAGC+TGG 0.515793 3_1:+74062964 None:intergenic
AACTTGGAACCTGCAAGCTC+GGG 0.516598 3_1:+74061868 None:intergenic
CTTTCCAAGTTACCTGGAGT+TGG 0.517490 3_1:-74062714 Msa0374610:CDS
GGCAAAGCCTCTTTAATTAG+GGG 0.518002 3_1:+74060730 None:intergenic
GAGGTAAGGATAGTTCTTGT+CGG 0.518734 3_1:+74063417 None:intergenic
GAAGATGTTTGAGGGAAATG+AGG 0.519541 3_1:+74063318 None:intergenic
TGGAGGAAGATTGGGAGTGA+AGG 0.520487 3_1:+74063273 None:intergenic
TTTCCAGCGGAAGGTTTGAC+CGG 0.521741 3_1:+74063382 None:intergenic
CCCTCCTACCTTTACACTTG+AGG 0.524416 3_1:-74061735 Msa0374610:CDS
TAAAACAGCTTGAGCCCAGC+CGG 0.524454 3_1:+74061786 None:intergenic
CTTATTTAGGTGAAGTTGAA+GGG 0.524953 3_1:-74063016 Msa0374610:CDS
TCCCTCAAACATCTTCAAAA+CGG 0.526912 3_1:-74063311 Msa0374610:CDS
AGTGAAGATGCAAACAGACC+AGG 0.528198 3_1:-74061049 Msa0374610:three_prime_UTR
CCACCAACCTCTCAATATCC+CGG 0.529694 3_1:-74063463 Msa0374610:CDS
TGTTGAGAGGGATCCATACC+CGG 0.530592 3_1:+74063444 None:intergenic
AGTATGGTAAATATGCCGGC+TGG 0.531143 3_1:-74061801 Msa0374610:CDS
TTCGATTAGAGTGAGATCTA+CGG 0.532966 3_1:-74061567 Msa0374610:intron
CCCTCAAGTGTAAAGGTAGG+AGG 0.533406 3_1:+74061734 None:intergenic
AGAGGTGGACAGTGAACTAC+TGG 0.535788 3_1:-74061289 Msa0374610:three_prime_UTR
GTGAAGATGCAAACAGACCA+GGG 0.536514 3_1:-74061048 Msa0374610:three_prime_UTR
GTGTTTCTCTTGCTGACACG+TGG 0.537150 3_1:-74063208 Msa0374610:CDS
ACAAAGTATGGTAAATATGC+CGG 0.537281 3_1:-74061805 Msa0374610:CDS
TCTTGTCGGGTTATGTTGAG+AGG 0.537793 3_1:+74063431 None:intergenic
CCAGCGGAAGGTTTGACCGG+TGG 0.538070 3_1:+74063385 None:intergenic
GAGTGATGAATGAGGGGTGC+AGG 0.538801 3_1:-74061407 Msa0374610:three_prime_UTR
GCAACATTTGAGTGGTGCTA+GGG 0.540107 3_1:-74063144 Msa0374610:intron
GAAAACAGCAAAGAAGAAGC+TGG 0.540644 3_1:-74061679 Msa0374610:intron
ATGTTTGAGGGAAATGAGGT+GGG 0.544232 3_1:+74063322 None:intergenic
CCACCGGTCAAACCTTCCGC+TGG 0.544466 3_1:-74063385 Msa0374610:CDS
GGAGGAAGATTGGGAGTGAA+GGG 0.545846 3_1:+74063274 None:intergenic
GCATTCAAAGCCTGAAGGTG+GGG 0.546759 3_1:-74062790 Msa0374610:CDS
TCTGAACTTTCCAAGTTACC+TGG 0.547907 3_1:-74062720 Msa0374610:CDS
TACCCGGGATATTGAGAGGT+TGG 0.548985 3_1:+74063460 None:intergenic
TGCATTCAAAGCCTGAAGGT+GGG 0.549194 3_1:-74062791 Msa0374610:CDS
TTGCATTCAAAGCCTGAAGG+TGG 0.549353 3_1:-74062792 Msa0374610:CDS
GGATTCCGATGAAAGATTTG+CGG 0.549689 3_1:-74063174 Msa0374610:CDS
TGAACTATTGGCGGAAGACA+TGG 0.552387 3_1:+74060945 None:intergenic
CTCCAACGATGATTGCAAAA+CGG 0.557394 3_1:-74063255 Msa0374610:CDS
AATATCCGTGAATTCTCCCC+TGG 0.557723 3_1:+74061031 None:intergenic
CCGGGATATTGAGAGGTTGG+TGG 0.559983 3_1:+74063463 None:intergenic
CAGTTCCGCAAATCTTTCAT+CGG 0.560607 3_1:+74063169 None:intergenic
ATATTGAGAGGTTGGTGGAG+TGG 0.561647 3_1:+74063468 None:intergenic
TGTTGATGTTCATGTTTGGC+GGG 0.563445 3_1:-74062634 Msa0374610:intron
TTTGTTGGCAGAGTAAATAG+TGG 0.564187 3_1:-74061230 Msa0374610:three_prime_UTR
ACCTGGAGTTGGTCCTAAAG+TGG 0.565307 3_1:-74062703 Msa0374610:CDS
AATCAGCTGTGGATAGAGCA+TGG 0.567290 3_1:-74061172 Msa0374610:three_prime_UTR
CACCAACCTCTCAATATCCC+GGG 0.568986 3_1:-74063462 Msa0374610:CDS
AAATCTTTCTCCCAATGAAG+AGG 0.569398 3_1:+74060839 None:intergenic
GGTGGGGAAGGTGAGAGGTA+AGG 0.569427 3_1:+74063403 None:intergenic
TCTGAAACTAATCAAATGCA+AGG 0.569641 3_1:+74060894 None:intergenic
GAGTCTAAGGCGATACACGC+TGG 0.570449 3_1:-74061539 Msa0374610:CDS
GTATGGTAAATATGCCGGCT+GGG 0.571044 3_1:-74061800 Msa0374610:CDS
GGCAGAGTAAATAGTGGAGA+TGG 0.572053 3_1:-74061224 Msa0374610:three_prime_UTR
GGTGGACAATGAACTATTGG+CGG 0.574550 3_1:+74060936 None:intergenic
TGACCGGTGGGGAAGGTGAG+AGG 0.575831 3_1:+74063398 None:intergenic
TTACCTCTCACCTTCCCCAC+CGG 0.576560 3_1:-74063401 Msa0374610:CDS
CTTGTCGGGTTATGTTGAGA+GGG 0.578835 3_1:+74063432 None:intergenic
AATGAAAGCTGGTTCAGAGT+AGG 0.581488 3_1:+74062975 None:intergenic
CAAGATATTGAGATAAAACA+TGG 0.581652 3_1:-74061491 Msa0374610:CDS
GTAAACGATGAAATTGTTGG+AGG 0.583257 3_1:+74060973 None:intergenic
GATTAATAGGGATTCTGGGA+TGG 0.591149 3_1:-74061075 Msa0374610:three_prime_UTR
TTCTCTTGCTGACACGTGGA+AGG 0.591357 3_1:-74063204 Msa0374610:CDS
TTGGTGTCCCTCAAGTGTAA+AGG 0.593031 3_1:+74061727 None:intergenic
ACTTCACAGTCGTGTTGCAG+AGG 0.596405 3_1:-74061836 Msa0374610:CDS
AACATGAACATCAACAGGAA+TGG 0.597125 3_1:+74062641 None:intergenic
AAAACACAGAATCATAGTAA+GGG 0.599703 3_1:+74061116 None:intergenic
GTTGAGAGGGATCCATACCC+GGG 0.599735 3_1:+74063445 None:intergenic
GCAAAGCCTCTTTAATTAGG+GGG 0.600600 3_1:+74060731 None:intergenic
ATCAGCTGTGGATAGAGCAT+GGG 0.603004 3_1:-74061171 Msa0374610:three_prime_UTR
AGCGGAAGGTTTGACCGGTG+GGG 0.603850 3_1:+74063387 None:intergenic
ATAATAACTTGAATCAGCTG+TGG 0.604504 3_1:-74061183 Msa0374610:three_prime_UTR
GGAGGAGGTAGTGATTTGGT+GGG 0.604507 3_1:+74063533 None:intergenic
GCCACTTTAGGACCAACTCC+AGG 0.606013 3_1:+74062702 None:intergenic
ACGACGCCGGTGAATTGAGA+AGG 0.607725 3_1:+74063350 None:intergenic
AGAAATCATGGTCGAAGCAG+AGG 0.608867 3_1:-74061307 Msa0374610:three_prime_UTR
CACTGCTGAGTGATGAATGA+GGG 0.609667 3_1:-74061414 Msa0374610:three_prime_UTR
AATAGTGGAGATGGACGTGT+AGG 0.610403 3_1:-74061215 Msa0374610:three_prime_UTR
GCCGGTGAATTGAGAAGGAG+CGG 0.615116 3_1:+74063355 None:intergenic
CCTCAAGTGTAAAGGTAGGA+GGG 0.619016 3_1:+74061735 None:intergenic
AATCATGGTCGAAGCAGAGG+TGG 0.620518 3_1:-74061304 Msa0374610:three_prime_UTR
ACCTTCAATTGACACAGAGG+TGG 0.630220 3_1:-74061346 Msa0374610:three_prime_UTR
GAACAGCAACTAAGAGACGC+TGG 0.630534 3_1:-74062945 Msa0374610:CDS
ACCGCTCCTTCTCAATTCAC+CGG 0.631136 3_1:-74063356 Msa0374610:CDS
GAGGTGGGAGCCAACGACGC+CGG 0.631246 3_1:+74063337 None:intergenic
ATTGTTGGAGGATAAAACAA+TGG 0.631511 3_1:+74060985 None:intergenic
GCTTTGCATTCAAAGCCTGA+AGG 0.631885 3_1:-74062795 Msa0374610:CDS
ATTTGTGGCTGACACAGAGG+TGG 0.641157 3_1:+74060918 None:intergenic
TCCATACCCGGGATATTGAG+AGG 0.641356 3_1:+74063456 None:intergenic
GATGTTTGAGGGAAATGAGG+TGG 0.643569 3_1:+74063321 None:intergenic
CGTGTCAGCAAGAGAAACAC+CGG 0.651572 3_1:+74063211 None:intergenic
GAACATCAACAGGAATGGCA+TGG 0.655759 3_1:+74062646 None:intergenic
CACTGCTGAGTGATGAATGA+GGG 0.658026 3_1:-74061462 Msa0374610:exon
AGAGAAACGCAGAACAAACA+CGG 0.665225 3_1:+74061143 None:intergenic
TGTCCCTCAAGTGTAAAGGT+AGG 0.665958 3_1:+74061731 None:intergenic
TGAAGATGCAAACAGACCAG+GGG 0.671195 3_1:-74061047 Msa0374610:three_prime_UTR
GGAGGATAAAACAATGGACA+TGG 0.671763 3_1:+74060991 None:intergenic
TCACTGCTGAGTGATGAATG+AGG 0.680213 3_1:-74061415 Msa0374610:three_prime_UTR
TCTGTGTCAATTGAAGGTTA+GGG 0.682149 3_1:+74061351 None:intergenic
GGAATTTGTGGCTGACACAG+AGG 0.693582 3_1:+74060915 None:intergenic
TCACTGCTGAGTGATGAATG+AGG 0.699203 3_1:-74061463 Msa0374610:exon
GAACTGGCGCAACATTTGAG+TGG 0.700408 3_1:-74063152 Msa0374610:CDS
GGTGGACAGTGAACTACTGG+CGG 0.704341 3_1:-74061286 Msa0374610:three_prime_UTR
TGAGTGATGAATGAGGGTGT+AGG 0.709515 3_1:-74061456 Msa0374610:exon
ACTGCTGAGTGATGAATGAG+GGG 0.728164 3_1:-74061413 Msa0374610:three_prime_UTR
CTAACCTTCAATTGACACAG+AGG 0.735306 3_1:-74061349 Msa0374610:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATATTTGAGATTAATA+GGG - chr3_1:74063199-74063218 Msa0374610:CDS 10.0%
!! TTCTAATGTTGTAATAAAAT+TGG - chr3_1:74061731-74061750 Msa0374610:CDS 15.0%
!!! TTGTTGTATTATTTTTTTCA+TGG - chr3_1:74062187-74062206 Msa0374610:intron 15.0%
!!! TGTTGTATTATTTTTTTCAT+GGG - chr3_1:74062188-74062207 Msa0374610:intron 15.0%
!! TATAAAAATCTAATTAACAG+AGG + chr3_1:74062254-74062273 None:intergenic 15.0%
!!! CTTTTATATTTGAGATTAAT+AGG - chr3_1:74063198-74063217 Msa0374610:CDS 15.0%
!!! GTTGTATTATTTTTTTCATG+GGG - chr3_1:74062189-74062208 Msa0374610:intron 20.0%
!! AGAAAAAAAATCTTGTCATA+TGG + chr3_1:74063489-74063508 None:intergenic 20.0%
! TATTAGTAGAATCACGAAAA+TGG - chr3_1:74061223-74061242 Msa0374610:three_prime_UTR 25.0%
!! TGAAGTATTTAAGCAAAAGT+AGG + chr3_1:74061681-74061700 None:intergenic 25.0%
! TTTGTTACCTATCAATAAGA+TGG - chr3_1:74061703-74061722 Msa0374610:CDS 25.0%
! TTGTTACCTATCAATAAGAT+GGG - chr3_1:74061704-74061723 Msa0374610:CDS 25.0%
!! AAGACAAATTTGATAGCAAA+AGG - chr3_1:74061798-74061817 Msa0374610:CDS 25.0%
!! AGACAAATTTGATAGCAAAA+GGG - chr3_1:74061799-74061818 Msa0374610:CDS 25.0%
!!! ATTATTTTTTTCCGTGGTTT+AGG - chr3_1:74061837-74061856 Msa0374610:CDS 25.0%
! AAACTATAAGAGAAACTGTT+AGG - chr3_1:74062056-74062075 Msa0374610:intron 25.0%
! GTTCTATCATAAACCTTATT+TGG + chr3_1:74062109-74062128 None:intergenic 25.0%
! GTTTCATTACAGATTTAGAA+GGG - chr3_1:74062221-74062240 Msa0374610:intron 25.0%
!!! ATCTTGTAGAGTTTTATGAT+TGG - chr3_1:74062320-74062339 Msa0374610:intron 25.0%
!! TGCTTTTATCATTTTCAAAC+TGG - chr3_1:74062368-74062387 Msa0374610:intron 25.0%
!! GCTTTTATCATTTTCAAACT+GGG - chr3_1:74062369-74062388 Msa0374610:intron 25.0%
!! CTTTTATCATTTTCAAACTG+GGG - chr3_1:74062370-74062389 Msa0374610:intron 25.0%
! TAAACTTGATGTTATAACGT+AGG - chr3_1:74062652-74062671 Msa0374610:CDS 25.0%
! CAAGATATTGAGATAAAACA+TGG - chr3_1:74062795-74062814 Msa0374610:CDS 25.0%
! AAAACACAGAATCATAGTAA+GGG + chr3_1:74063173-74063192 None:intergenic 25.0%
! GTGTCAAGTGTTTATTTAAA+TGG + chr3_1:74063514-74063533 None:intergenic 25.0%
AACTGAATCAAGCATTCAAA+GGG + chr3_1:74061182-74061201 None:intergenic 30.0%
AAACTGAATCAAGCATTCAA+AGG + chr3_1:74061183-74061202 None:intergenic 30.0%
ACTTATTTAGGTGAAGTTGA+AGG - chr3_1:74061269-74061288 Msa0374610:three_prime_UTR 30.0%
CTTATTTAGGTGAAGTTGAA+GGG - chr3_1:74061270-74061289 Msa0374610:three_prime_UTR 30.0%
!!! TGGTTGCTATTTTCTTGATA+GGG - chr3_1:74061442-74061461 Msa0374610:three_prime_UTR 30.0%
GATAGGGCTAAATATATAAC+TGG - chr3_1:74061458-74061477 Msa0374610:exon 30.0%
AAATTGCCCATCTTATTGAT+AGG + chr3_1:74061713-74061732 None:intergenic 30.0%
!!! GTTGTCATTATTTTTTTCCG+TGG - chr3_1:74061831-74061850 Msa0374610:CDS 30.0%
!! TTATACCACTTTTCTACTGT+AGG + chr3_1:74061926-74061945 None:intergenic 30.0%
GTAGAAAAGTGGTATAAAAC+TGG - chr3_1:74061929-74061948 Msa0374610:intron 30.0%
! GTTTCTCTTATAGTTTTTCC+AGG + chr3_1:74062052-74062071 None:intergenic 30.0%
AACTGTTAGGAAATATGTAG+AGG - chr3_1:74062069-74062088 Msa0374610:intron 30.0%
ATATGTAGAGGTTAATGAGT+TGG - chr3_1:74062081-74062100 Msa0374610:intron 30.0%
! TAATGAGTTGGATCCAAATA+AGG - chr3_1:74062093-74062112 Msa0374610:intron 30.0%
!!! GTATTATTTTTTTCATGGGG+TGG - chr3_1:74062192-74062211 Msa0374610:intron 30.0%
GGTTTCATTACAGATTTAGA+AGG - chr3_1:74062220-74062239 Msa0374610:intron 30.0%
ACAAAGTATGGTAAATATGC+CGG - chr3_1:74062481-74062500 Msa0374610:intron 30.0%
TGAACTCTTAGTAGAAATCA+TGG - chr3_1:74062967-74062986 Msa0374610:CDS 30.0%
ATAATAACTTGAATCAGCTG+TGG - chr3_1:74063103-74063122 Msa0374610:intron 30.0%
GAAAACACAGAATCATAGTA+AGG + chr3_1:74063174-74063193 None:intergenic 30.0%
! TTTGAGATTAATAGGGATTC+TGG - chr3_1:74063206-74063225 Msa0374610:CDS 30.0%
TTGAGATTAATAGGGATTCT+GGG - chr3_1:74063207-74063226 Msa0374610:CDS 30.0%
ATTGTTGGAGGATAAAACAA+TGG + chr3_1:74063304-74063323 None:intergenic 30.0%
GAAGTAAACGATGAAATTGT+TGG + chr3_1:74063319-74063338 None:intergenic 30.0%
AATCAAATGCAAGGAATTTG+TGG + chr3_1:74063386-74063405 None:intergenic 30.0%
! TCTGAAACTAATCAAATGCA+AGG + chr3_1:74063395-74063414 None:intergenic 30.0%
TCCCTCAAACATCTTCAAAA+CGG - chr3_1:74060975-74060994 Msa0374610:three_prime_UTR 35.0%
TTGCTTGATTTCTTAAACGC+CGG - chr3_1:74061056-74061075 Msa0374610:three_prime_UTR 35.0%
TTGATTACGTTTCGTCTCTT+GGG - chr3_1:74061246-74061265 Msa0374610:three_prime_UTR 35.0%
GTTCAGAAACTAATGAAAGC+TGG + chr3_1:74061325-74061344 None:intergenic 35.0%
!! TTTTGGTTACAGGTTAGGTT+AGG - chr3_1:74061364-74061383 Msa0374610:three_prime_UTR 35.0%
!!! GTGGTTGCTATTTTCTTGAT+AGG - chr3_1:74061441-74061460 Msa0374610:three_prime_UTR 35.0%
AACATGAACATCAACAGGAA+TGG + chr3_1:74061648-74061667 None:intergenic 35.0%
TTCCTGTTGATGTTCATGTT+TGG - chr3_1:74061648-74061667 Msa0374610:intron 35.0%
!!! TTTTTTCCGTGGTTTAGGAA+TGG - chr3_1:74061842-74061861 Msa0374610:CDS 35.0%
! AAGTGGTATAAAACTGGCTT+AGG - chr3_1:74061935-74061954 Msa0374610:intron 35.0%
ACGAAGAGTAGATTAGATGT+AGG - chr3_1:74061999-74062018 Msa0374610:intron 35.0%
!!! TTATTTTTTTCATGGGGTGG+TGG - chr3_1:74062195-74062214 Msa0374610:intron 35.0%
TGCTATCATTTATGCATGAC+TGG - chr3_1:74062290-74062309 Msa0374610:intron 35.0%
! CTCGGGTAAGATATACTTTT+GGG + chr3_1:74062404-74062423 None:intergenic 35.0%
! GAGGCTTTTGTAACAAAGTA+TGG - chr3_1:74062469-74062488 Msa0374610:intron 35.0%
! CTGTTTTCTTCTATCTTTGC+GGG + chr3_1:74062595-74062614 None:intergenic 35.0%
!! GCTGTTTTCTTCTATCTTTG+CGG + chr3_1:74062596-74062615 None:intergenic 35.0%
TTCGATTAGAGTGAGATCTA+CGG - chr3_1:74062719-74062738 Msa0374610:CDS 35.0%
TCTGTGTCAATTGAAGGTTA+GGG + chr3_1:74062938-74062957 None:intergenic 35.0%
ACATGGAAGATGAACTTTGT+TGG - chr3_1:74063041-74063060 Msa0374610:CDS 35.0%
TTTGTTGGCAGAGTAAATAG+TGG - chr3_1:74063056-74063075 Msa0374610:CDS 35.0%
GTAAACGATGAAATTGTTGG+AGG + chr3_1:74063316-74063335 None:intergenic 35.0%
AAATCTTTCTCCCAATGAAG+AGG + chr3_1:74063450-74063469 None:intergenic 35.0%
CTTGTCATATGGCAAGAAAT+GGG + chr3_1:74063478-74063497 None:intergenic 35.0%
TCTTGTCATATGGCAAGAAA+TGG + chr3_1:74063479-74063498 None:intergenic 35.0%
AGGCAAAGCCTCTTTAATTA+GGG + chr3_1:74063560-74063579 None:intergenic 35.0%
AAGGCAAAGCCTCTTTAATT+AGG + chr3_1:74063561-74063580 None:intergenic 35.0%
AGGTAAGGATAGTTCTTGTC+GGG + chr3_1:74060871-74060890 None:intergenic 40.0%
GAGGTAAGGATAGTTCTTGT+CGG + chr3_1:74060872-74060891 None:intergenic 40.0%
ATGTTTGAGGGAAATGAGGT+GGG + chr3_1:74060967-74060986 None:intergenic 40.0%
GAAGATGTTTGAGGGAAATG+AGG + chr3_1:74060971-74060990 None:intergenic 40.0%
!!! GCCGTTTTGAAGATGTTTGA+GGG + chr3_1:74060979-74060998 None:intergenic 40.0%
ATCATCGTTGGAGGAAGATT+GGG + chr3_1:74061024-74061043 None:intergenic 40.0%
AATCATCGTTGGAGGAAGAT+TGG + chr3_1:74061025-74061044 None:intergenic 40.0%
CTCCAACGATGATTGCAAAA+CGG - chr3_1:74061031-74061050 Msa0374610:three_prime_UTR 40.0%
GGATTCCGATGAAAGATTTG+CGG - chr3_1:74061112-74061131 Msa0374610:three_prime_UTR 40.0%
CAGTTCCGCAAATCTTTCAT+CGG + chr3_1:74061120-74061139 None:intergenic 40.0%
GTTGATTACGTTTCGTCTCT+TGG - chr3_1:74061245-74061264 Msa0374610:three_prime_UTR 40.0%
TCGTCTCTTGGGACTTATTT+AGG - chr3_1:74061257-74061276 Msa0374610:three_prime_UTR 40.0%
! AATGAAAGCTGGTTCAGAGT+AGG + chr3_1:74061314-74061333 None:intergenic 40.0%
GTTTCGTGTGAATGTTAACG+TGG - chr3_1:74061422-74061441 Msa0374610:three_prime_UTR 40.0%
! GCTTTATTCTCTTCGCACAT+TGG - chr3_1:74061526-74061545 Msa0374610:CDS 40.0%
TCTGAACTTTCCAAGTTACC+TGG - chr3_1:74061566-74061585 Msa0374610:intron 40.0%
CTGTTGATGTTCATGTTTGG+CGG - chr3_1:74061651-74061670 Msa0374610:intron 40.0%
TGTTGATGTTCATGTTTGGC+GGG - chr3_1:74061652-74061671 Msa0374610:intron 40.0%
GTCTTACCATTCCTAAACCA+CGG + chr3_1:74061851-74061870 None:intergenic 40.0%
TTAGGAATGGTAAGACCAGA+CGG - chr3_1:74061855-74061874 Msa0374610:CDS 40.0%
ATTCCTAATCATATCCCGTC+TGG + chr3_1:74061873-74061892 None:intergenic 40.0%
ACACCATTAGAGAGAGAGTT+GGG - chr3_1:74061894-74061913 Msa0374610:intron 40.0%
TAGCTCCTACAGTAGAAAAG+TGG - chr3_1:74061918-74061937 Msa0374610:intron 40.0%
! TGGTATAAAACTGGCTTAGG+TGG - chr3_1:74061938-74061957 Msa0374610:intron 40.0%
CTTCGTACTACAACATCTAC+AGG + chr3_1:74061985-74062004 None:intergenic 40.0%
! GCTCGGGTAAGATATACTTT+TGG + chr3_1:74062405-74062424 None:intergenic 40.0%
GTGAAGTTTCTGTGTCAACT+TGG + chr3_1:74062437-74062456 None:intergenic 40.0%
GAAAACAGCAAAGAAGAAGC+TGG - chr3_1:74062607-74062626 Msa0374610:intron 40.0%
TCGATTAGAGTGAGATCTAC+GGG - chr3_1:74062720-74062739 Msa0374610:CDS 40.0%
CTCTGTGTCAATTGAAGGTT+AGG + chr3_1:74062939-74062958 None:intergenic 40.0%
CTAACCTTCAATTGACACAG+AGG - chr3_1:74062937-74062956 Msa0374610:CDS 40.0%
AGAGAAACGCAGAACAAACA+CGG + chr3_1:74063146-74063165 None:intergenic 40.0%
! GATTAATAGGGATTCTGGGA+TGG - chr3_1:74063211-74063230 Msa0374610:CDS 40.0%
GGAGGATAAAACAATGGACA+TGG + chr3_1:74063298-74063317 None:intergenic 40.0%
AGAGGTGGACAATGAACTAT+TGG + chr3_1:74063356-74063375 None:intergenic 40.0%
TCTGCATCTTTCCTCTTCAT+TGG - chr3_1:74063436-74063455 Msa0374610:CDS 40.0%
CTGCATCTTTCCTCTTCATT+GGG - chr3_1:74063437-74063456 Msa0374610:CDS 40.0%
TTAGCTCCCCCTAATTAAAG+AGG - chr3_1:74063549-74063568 Msa0374610:CDS 40.0%
GCAAAGCCTCTTTAATTAGG+GGG + chr3_1:74063558-74063577 None:intergenic 40.0%
GGCAAAGCCTCTTTAATTAG+GGG + chr3_1:74063559-74063578 None:intergenic 40.0%
AAGAGGAGGAGGTAGTGATT+TGG + chr3_1:74060760-74060779 None:intergenic 45.0%
!! ATATTGAGAGGTTGGTGGAG+TGG + chr3_1:74060821-74060840 None:intergenic 45.0%
CTTGTCGGGTTATGTTGAGA+GGG + chr3_1:74060857-74060876 None:intergenic 45.0%
TCTTGTCGGGTTATGTTGAG+AGG + chr3_1:74060858-74060877 None:intergenic 45.0%
GATGTTTGAGGGAAATGAGG+TGG + chr3_1:74060968-74060987 None:intergenic 45.0%
!!! CGCCGTTTTGAAGATGTTTG+AGG + chr3_1:74060980-74060999 None:intergenic 45.0%
! CGTTTTGCAATCATCGTTGG+AGG + chr3_1:74061033-74061052 None:intergenic 45.0%
!!! TGCCGTTTTGCAATCATCGT+TGG + chr3_1:74061036-74061055 None:intergenic 45.0%
CGATGAAAGATTTGCGGAAC+TGG - chr3_1:74061118-74061137 Msa0374610:three_prime_UTR 45.0%
! GCAACATTTGAGTGGTGCTA+GGG - chr3_1:74061142-74061161 Msa0374610:three_prime_UTR 45.0%
!!! CAACTAAGAGACGCTGGTTT+TGG - chr3_1:74061347-74061366 Msa0374610:three_prime_UTR 45.0%
!!! GCTGGTTTTGGTTACAGGTT+AGG - chr3_1:74061359-74061378 Msa0374610:three_prime_UTR 45.0%
GCTTTGCATTCAAAGCCTGA+AGG - chr3_1:74061491-74061510 Msa0374610:CDS 45.0%
TTGCATTCAAAGCCTGAAGG+TGG - chr3_1:74061494-74061513 Msa0374610:CDS 45.0%
TGCATTCAAAGCCTGAAGGT+GGG - chr3_1:74061495-74061514 Msa0374610:CDS 45.0%
CTTTCCAAGTTACCTGGAGT+TGG - chr3_1:74061572-74061591 Msa0374610:intron 45.0%
! GCTATACAAGCAGCCACTTT+AGG + chr3_1:74061599-74061618 None:intergenic 45.0%
GAACATCAACAGGAATGGCA+TGG + chr3_1:74061643-74061662 None:intergenic 45.0%
CGCCAAACATGAACATCAAC+AGG + chr3_1:74061653-74061672 None:intergenic 45.0%
TAGGAATGGTAAGACCAGAC+GGG - chr3_1:74061856-74061875 Msa0374610:CDS 45.0%
AGACCAGACGGGATATGATT+AGG - chr3_1:74061867-74061886 Msa0374610:CDS 45.0%
GACACCATTAGAGAGAGAGT+TGG - chr3_1:74061893-74061912 Msa0374610:intron 45.0%
CACCATTAGAGAGAGAGTTG+GGG - chr3_1:74061895-74061914 Msa0374610:intron 45.0%
TACCCCAACTCTCTCTCTAA+TGG + chr3_1:74061900-74061919 None:intergenic 45.0%
TGTAGGAGTCAGATCAGAAG+AGG - chr3_1:74062016-74062035 Msa0374610:intron 45.0%
AGTCAGATCAGAAGAGGTAG+TGG - chr3_1:74062022-74062041 Msa0374610:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG + chr3_1:74062162-74062181 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG + chr3_1:74062163-74062182 None:intergenic 45.0%
!!! TTTTTTTCATGGGGTGGTGG+AGG - chr3_1:74062198-74062217 Msa0374610:intron 45.0%
!!! TTTTTTCATGGGGTGGTGGA+GGG - chr3_1:74062199-74062218 Msa0374610:intron 45.0%
TATATCTTACCCGAGCTTGC+AGG - chr3_1:74062409-74062428 Msa0374610:intron 45.0%
AGTATGGTAAATATGCCGGC+TGG - chr3_1:74062485-74062504 Msa0374610:intron 45.0%
! GTATGGTAAATATGCCGGCT+GGG - chr3_1:74062486-74062505 Msa0374610:intron 45.0%
CCTCAAGTGTAAAGGTAGGA+GGG + chr3_1:74062554-74062573 None:intergenic 45.0%
CCTCCTACCTTTACACTTGA+GGG - chr3_1:74062552-74062571 Msa0374610:intron 45.0%
TGTCCCTCAAGTGTAAAGGT+AGG + chr3_1:74062558-74062577 None:intergenic 45.0%
! TTGGTGTCCCTCAAGTGTAA+AGG + chr3_1:74062562-74062581 None:intergenic 45.0%
AACGTAGGCGTTCGAATATG+CGG - chr3_1:74062667-74062686 Msa0374610:CDS 45.0%
! ATCTACGGGTTGTGAGTCTA+AGG - chr3_1:74062734-74062753 Msa0374610:CDS 45.0%
TCACTGCTGAGTGATGAATG+AGG - chr3_1:74062823-74062842 Msa0374610:CDS 45.0%
CACTGCTGAGTGATGAATGA+GGG - chr3_1:74062824-74062843 Msa0374610:CDS 45.0%
! TGAGTGATGAATGAGGGTGT+AGG - chr3_1:74062830-74062849 Msa0374610:intron 45.0%
TCACTGCTGAGTGATGAATG+AGG - chr3_1:74062823-74062842 Msa0374610:CDS 45.0%
CACTGCTGAGTGATGAATGA+GGG - chr3_1:74062824-74062843 Msa0374610:CDS 45.0%
ACTGCTGAGTGATGAATGAG+GGG - chr3_1:74062825-74062844 Msa0374610:CDS 45.0%
ACCTTCAATTGACACAGAGG+TGG - chr3_1:74062940-74062959 Msa0374610:CDS 45.0%
TCCACCTCTGTGTCAATTGA+AGG + chr3_1:74062944-74062963 None:intergenic 45.0%
AGAAATCATGGTCGAAGCAG+AGG - chr3_1:74062979-74062998 Msa0374610:CDS 45.0%
TGACTTAGTCGTTGCGAACA+TGG - chr3_1:74063024-74063043 Msa0374610:CDS 45.0%
! GGCAGAGTAAATAGTGGAGA+TGG - chr3_1:74063062-74063081 Msa0374610:CDS 45.0%
! AATAGTGGAGATGGACGTGT+AGG - chr3_1:74063071-74063090 Msa0374610:CDS 45.0%
AATCAGCTGTGGATAGAGCA+TGG - chr3_1:74063114-74063133 Msa0374610:intron 45.0%
ATCAGCTGTGGATAGAGCAT+GGG - chr3_1:74063115-74063134 Msa0374610:intron 45.0%
AGTGAAGATGCAAACAGACC+AGG - chr3_1:74063237-74063256 Msa0374610:CDS 45.0%
GTGAAGATGCAAACAGACCA+GGG - chr3_1:74063238-74063257 Msa0374610:CDS 45.0%
TGAAGATGCAAACAGACCAG+GGG - chr3_1:74063239-74063258 Msa0374610:CDS 45.0%
AATATCCGTGAATTCTCCCC+TGG + chr3_1:74063258-74063277 None:intergenic 45.0%
AACAATGGACATGGACATGC+AGG + chr3_1:74063289-74063308 None:intergenic 45.0%
TGAACTATTGGCGGAAGACA+TGG + chr3_1:74063344-74063363 None:intergenic 45.0%
GGTGGACAATGAACTATTGG+CGG + chr3_1:74063353-74063372 None:intergenic 45.0%
!! GGAGGAGGTAGTGATTTGGT+GGG + chr3_1:74060756-74060775 None:intergenic 50.0%
! AGGAGGAGGTAGTGATTTGG+TGG + chr3_1:74060757-74060776 None:intergenic 50.0%
CCACCAACCTCTCAATATCC+CGG - chr3_1:74060823-74060842 Msa0374610:three_prime_UTR 50.0%
CACCAACCTCTCAATATCCC+GGG - chr3_1:74060824-74060843 Msa0374610:three_prime_UTR 50.0%
TACCCGGGATATTGAGAGGT+TGG + chr3_1:74060829-74060848 None:intergenic 50.0%
ACCTCTCAATATCCCGGGTA+TGG - chr3_1:74060829-74060848 Msa0374610:three_prime_UTR 50.0%
TCCATACCCGGGATATTGAG+AGG + chr3_1:74060833-74060852 None:intergenic 50.0%
TGTTGAGAGGGATCCATACC+CGG + chr3_1:74060845-74060864 None:intergenic 50.0%
TTTCCAGCGGAAGGTTTGAC+CGG + chr3_1:74060907-74060926 None:intergenic 50.0%
! AAGGAGCGGTGTTTTTCCAG+CGG + chr3_1:74060920-74060939 None:intergenic 50.0%
ACCGCTCCTTCTCAATTCAC+CGG - chr3_1:74060930-74060949 Msa0374610:three_prime_UTR 50.0%
GGAGGAAGATTGGGAGTGAA+GGG + chr3_1:74061015-74061034 None:intergenic 50.0%
TGGAGGAAGATTGGGAGTGA+AGG + chr3_1:74061016-74061035 None:intergenic 50.0%
CGTGTCAGCAAGAGAAACAC+CGG + chr3_1:74061078-74061097 None:intergenic 50.0%
GTGTTTCTCTTGCTGACACG+TGG - chr3_1:74061078-74061097 Msa0374610:three_prime_UTR 50.0%
TTCTCTTGCTGACACGTGGA+AGG - chr3_1:74061082-74061101 Msa0374610:three_prime_UTR 50.0%
!! TGACACGTGGAAGGTGTTCT+CGG - chr3_1:74061091-74061110 Msa0374610:three_prime_UTR 50.0%
GAACTGGCGCAACATTTGAG+TGG - chr3_1:74061134-74061153 Msa0374610:three_prime_UTR 50.0%
CGCAACATTTGAGTGGTGCT+AGG - chr3_1:74061141-74061160 Msa0374610:three_prime_UTR 50.0%
GAACAGCAACTAAGAGACGC+TGG - chr3_1:74061341-74061360 Msa0374610:three_prime_UTR 50.0%
!!! GAGACGCTGGTTTTGGTTAC+AGG - chr3_1:74061354-74061373 Msa0374610:three_prime_UTR 50.0%
GCATTCAAAGCCTGAAGGTG+GGG - chr3_1:74061496-74061515 Msa0374610:CDS 50.0%
AGGACCAACTCCAGGTAACT+TGG + chr3_1:74061579-74061598 None:intergenic 50.0%
! ACCTGGAGTTGGTCCTAAAG+TGG - chr3_1:74061583-74061602 Msa0374610:intron 50.0%
GCTTAGGTGGTTTGAGCATG+TGG - chr3_1:74061951-74061970 Msa0374610:intron 50.0%
!! AGAAGAGGTAGTGGAAGACC+TGG - chr3_1:74062031-74062050 Msa0374610:intron 50.0%
CTTATCCCACTAAGTGGGGT+CGG + chr3_1:74062158-74062177 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG + chr3_1:74062164-74062183 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG - chr3_1:74062161-74062180 Msa0374610:intron 50.0%
AACTTGGAACCTGCAAGCTC+GGG + chr3_1:74062421-74062440 None:intergenic 50.0%
CAACTTGGAACCTGCAAGCT+CGG + chr3_1:74062422-74062441 None:intergenic 50.0%
ACTTCACAGTCGTGTTGCAG+AGG - chr3_1:74062450-74062469 Msa0374610:intron 50.0%
TAAAACAGCTTGAGCCCAGC+CGG + chr3_1:74062503-74062522 None:intergenic 50.0%
TGCCGAGTTGCCTTCACAAA+AGG - chr3_1:74062528-74062547 Msa0374610:intron 50.0%
! GGCCTTTTGTGAAGGCAACT+CGG + chr3_1:74062533-74062552 None:intergenic 50.0%
CCCTCCTACCTTTACACTTG+AGG - chr3_1:74062551-74062570 Msa0374610:intron 50.0%
CCCTCAAGTGTAAAGGTAGG+AGG + chr3_1:74062555-74062574 None:intergenic 50.0%
CTTTGCGGGATTCTTCTGCT+TGG + chr3_1:74062581-74062600 None:intergenic 50.0%
AATCATGGTCGAAGCAGAGG+TGG - chr3_1:74062982-74063001 Msa0374610:CDS 50.0%
AGAGGTGGACAGTGAACTAC+TGG - chr3_1:74062997-74063016 Msa0374610:CDS 50.0%
ACAGACCAGGGGAGAATTCA+CGG - chr3_1:74063250-74063269 Msa0374610:CDS 50.0%
ATTTGTGGCTGACACAGAGG+TGG + chr3_1:74063371-74063390 None:intergenic 50.0%
GGAATTTGTGGCTGACACAG+AGG + chr3_1:74063374-74063393 None:intergenic 50.0%
GTTGAAGGTGGAAGAGGAGG+AGG + chr3_1:74060771-74060790 None:intergenic 55.0%
! GGTGTTGAAGGTGGAAGAGG+AGG + chr3_1:74060774-74060793 None:intergenic 55.0%
!! GTTTGGGTTTGGGGTGTTGG+GGG + chr3_1:74060795-74060814 None:intergenic 55.0%
!! GGTTTGGGTTTGGGGTGTTG+GGG + chr3_1:74060796-74060815 None:intergenic 55.0%
! GGGTTTGGGTTTGGGGTGTT+GGG + chr3_1:74060797-74060816 None:intergenic 55.0%
!! TTGAGAGGTTGGTGGAGTGG+CGG + chr3_1:74060818-74060837 None:intergenic 55.0%
CCGGGATATTGAGAGGTTGG+TGG + chr3_1:74060826-74060845 None:intergenic 55.0%
GTTGAGAGGGATCCATACCC+GGG + chr3_1:74060844-74060863 None:intergenic 55.0%
TTACCTCTCACCTTCCCCAC+CGG - chr3_1:74060885-74060904 Msa0374610:three_prime_UTR 55.0%
! AGCGGTGTTTTTCCAGCGGA+AGG + chr3_1:74060916-74060935 None:intergenic 55.0%
GCCGGTGAATTGAGAAGGAG+CGG + chr3_1:74060934-74060953 None:intergenic 55.0%
ACGACGCCGGTGAATTGAGA+AGG + chr3_1:74060939-74060958 None:intergenic 55.0%
TCTCAATTCACCGGCGTCGT+TGG - chr3_1:74060939-74060958 Msa0374610:three_prime_UTR 55.0%
AGCCTGAAGGTGGGGAAGAA+TGG - chr3_1:74061504-74061523 Msa0374610:CDS 55.0%
AGCCATTCTTCCCCACCTTC+AGG + chr3_1:74061509-74061528 None:intergenic 55.0%
!! GCCACTTTAGGACCAACTCC+AGG + chr3_1:74061587-74061606 None:intergenic 55.0%
ACTAAGTGGGGTCGGCTACA+TGG + chr3_1:74062150-74062169 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG - chr3_1:74062149-74062168 Msa0374610:intron 55.0%
TGTAGCCGACCCCACTTAGT+GGG - chr3_1:74062150-74062169 Msa0374610:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG - chr3_1:74062156-74062175 Msa0374610:intron 55.0%
! GGTAGGAGGGCCTTTTGTGA+AGG + chr3_1:74062541-74062560 None:intergenic 55.0%
! GAGTCTAAGGCGATACACGC+TGG - chr3_1:74062747-74062766 Msa0374610:CDS 55.0%
! GAGTGATGAATGAGGGGTGC+AGG - chr3_1:74062879-74062898 Msa0374610:intron 55.0%
GGTGGACAGTGAACTACTGG+CGG - chr3_1:74063000-74063019 Msa0374610:CDS 55.0%
!! GGGGGTGTTGAAGGTGGAAG+AGG + chr3_1:74060777-74060796 None:intergenic 60.0%
!! GGTGTTGGGGGTGTTGAAGG+TGG + chr3_1:74060783-74060802 None:intergenic 60.0%
!! TGGGGTGTTGGGGGTGTTGA+AGG + chr3_1:74060786-74060805 None:intergenic 60.0%
! CGGGTTTGGGTTTGGGGTGT+TGG + chr3_1:74060798-74060817 None:intergenic 60.0%
!! GAGTGGCGGGTTTGGGTTTG+GGG + chr3_1:74060804-74060823 None:intergenic 60.0%
!! GGAGTGGCGGGTTTGGGTTT+GGG + chr3_1:74060805-74060824 None:intergenic 60.0%
!! TGGAGTGGCGGGTTTGGGTT+TGG + chr3_1:74060806-74060825 None:intergenic 60.0%
!! GTTGGTGGAGTGGCGGGTTT+GGG + chr3_1:74060811-74060830 None:intergenic 60.0%
!! TGAGAGGTTGGTGGAGTGGC+GGG + chr3_1:74060817-74060836 None:intergenic 60.0%
GGTGGGGAAGGTGAGAGGTA+AGG + chr3_1:74060886-74060905 None:intergenic 60.0%
GAAGGTTTGACCGGTGGGGA+AGG + chr3_1:74060898-74060917 None:intergenic 60.0%
AGCGGAAGGTTTGACCGGTG+GGG + chr3_1:74060902-74060921 None:intergenic 60.0%
CAGCGGAAGGTTTGACCGGT+GGG + chr3_1:74060903-74060922 None:intergenic 60.0%
GCGATACACGCTGGAGACTC+AGG - chr3_1:74062756-74062775 Msa0374610:CDS 60.0%
!! GGTTGGTGGAGTGGCGGGTT+TGG + chr3_1:74060812-74060831 None:intergenic 65.0%
TGACCGGTGGGGAAGGTGAG+AGG + chr3_1:74060891-74060910 None:intergenic 65.0%
CCAGCGGAAGGTTTGACCGG+TGG + chr3_1:74060904-74060923 None:intergenic 65.0%
CCACCGGTCAAACCTTCCGC+TGG - chr3_1:74060901-74060920 Msa0374610:three_prime_UTR 65.0%
GAGGTGGGAGCCAACGACGC+CGG + chr3_1:74060952-74060971 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 74060723 74063585 74060723 ID=Msa0374610;Name=Msa0374610
chr3_1 mRNA 74060723 74063585 74060723 ID=Msa0374610-mRNA-1;Parent=Msa0374610;Name=Msa0374610-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0.5|0.4|1|0.5|0.4|5|749|388
chr3_1 exon 74060723 74061578 74060723 ID=Msa0374610-mRNA-1:exon:17060;Parent=Msa0374610-mRNA-1
chr3_1 exon 74061680 74061911 74061680 ID=Msa0374610-mRNA-1:exon:17059;Parent=Msa0374610-mRNA-1
chr3_1 exon 74062635 74062845 74062635 ID=Msa0374610-mRNA-1:exon:17058;Parent=Msa0374610-mRNA-1
chr3_1 exon 74062933 74063108 74062933 ID=Msa0374610-mRNA-1:exon:17057;Parent=Msa0374610-mRNA-1
chr3_1 exon 74063145 74063585 74063145 ID=Msa0374610-mRNA-1:exon:17056;Parent=Msa0374610-mRNA-1
chr3_1 CDS 74063145 74063585 74063145 ID=Msa0374610-mRNA-1:cds;Parent=Msa0374610-mRNA-1
chr3_1 CDS 74062933 74063108 74062933 ID=Msa0374610-mRNA-1:cds;Parent=Msa0374610-mRNA-1
chr3_1 CDS 74062635 74062845 74062635 ID=Msa0374610-mRNA-1:cds;Parent=Msa0374610-mRNA-1
chr3_1 CDS 74061680 74061911 74061680 ID=Msa0374610-mRNA-1:cds;Parent=Msa0374610-mRNA-1
chr3_1 CDS 74061472 74061578 74061472 ID=Msa0374610-mRNA-1:cds;Parent=Msa0374610-mRNA-1
chr3_1 three_prime_UTR 74060723 74061471 74060723 ID=Msa0374610-mRNA-1:three_prime_utr;Parent=Msa0374610-mRNA-1
Gene Sequence

>Msa0374610

ATAAGAGCAATGACGAAGAGAAAAAGATCACCCACCAAATCACTACCTCCTCCTCTTCCACCTTCAACACCCCCAACACCCCAAACCCAAACCCGCCACTCCACCAACCTCTCAATATCCCGGGTATGGATCCCTCTCAACATAACCCGACAAGAACTATCCTTACCTCTCACCTTCCCCACCGGTCAAACCTTCCGCTGGAAAAACACCGCTCCTTCTCAATTCACCGGCGTCGTTGGCTCCCACCTCATTTCCCTCAAACATCTTCAAAACGGCGACGTTTGCTACACCCTTCACTCCCAATCTTCCTCCAACGATGATTGCAAAACGGCATTGCTTGATTTCTTAAACGCCGGTGTTTCTCTTGCTGACACGTGGAAGGTGTTCTCGGATTCCGATGAAAGATTTGCGGAACTGGCGCAACATTTGAGTGGTGCTAGGTTTATGTGTTCTTCTAATAATCATATTAGTAGAATCACGAAAATGGTTGATTACGTTTCGTCTCTTGGGACTTATTTAGGTGAAGTTGAAGGGTTTGATTTTCATGCTTTTCCTACTCTGAACCAGCTTTCATTAGTTTCTGAACAGCAACTAAGAGACGCTGGTTTTGGTTACAGGGCTAAATATATAACTGGCACTGTAAATGCTTTGCATTCAAAGCCTGAAGGTGGGGAAGAATGGCTTTATTCTCTTCGCACATTGGAGCTTGAAGATGTAATATCTGAACTTTCCAAGTTACCTGGAGTTGGTCCTAAAGTGGCTGCTTGTATAGCTCTTTACTCACTTGATCAGCACCATGCCATTCCTGTTGATGTTCATGTTTGGCGGATTGCCCAAAAGTATATCTTACCCGAGCTTGCAGGTTCCAAGTTGACACAGAAACTTCACAGTCGTGTTGCAGAGGCTTTTGTAACAAAGTATGGTAAATATGCCGGCTGGGCTCAAGCTGTTTTATTTATTGCCGAGTTGCCTTCACAAAAGGCCCTCCTACCTTTACACTTGAGGGACACCAAGCAGAAGAATCCCGCAAAGATAGAAGAAAACAGCAAAGAAGAAGCTGTGAGATCTACGGGTTGTGAGTCTAAGGCGATACACGCTGGAGACTCAGGCGCGACAGACTGCAATCAAGATATTGAGATAAAACATGGTGATATCACTGCTGAGTGA
Protein sequence

>Msa0374610

IRAMTKRKRSPTKSLPPPLPPSTPPTPQTQTRHSTNLSISRVWIPLNITRQELSLPLTFPTGQTFRWKNTAPSQFTGVVGSHLISLKHLQNGDVCYTLHSQSSSNDDCKTALLDFLNAGVSLADTWKVFSDSDERFAELAQHLSGARFMCSSNNHISRITKMVDYVSSLGTYLGEVEGFDFHAFPTLNQLSLVSEQQLRDAGFGYRAKYITGTVNALHSKPEGGEEWLYSLRTLELEDVISELSKLPGVGPKVAACIALYSLDQHHAIPVDVHVWRIAQKYILPELAGSKLTQKLHSRVAEAFVTKYGKYAGWAQAVLFIAELPSQKALLPLHLRDTKQKNPAKIEENSKEEAVRSTGCESKAIHAGDSGATDCNQDIEIKHGDITAE*